BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15848
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AD8|A Chain A, Crystal Structure Of A Deletion Mutant Of Deinococcus
           Radiodurans Recn
          Length = 517

 Score = 31.2 bits (69), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 80  TLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNV 120
           T+ RKA  TP AA  PE+  V +PP P + P  P  S   +
Sbjct: 6   TMTRKAR-TPKAAPVPEAVAVVEPPPPDAAPTGPRLSRLEI 45


>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
           From Rat
          Length = 343

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 48  SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESP-TVTKPPTP 106
           S EP V  + P +A   P   + +QPV F S +         N A + + P +V   P  
Sbjct: 250 SEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYT 309

Query: 107 RSLPVSPAP 115
            ++ V  +P
Sbjct: 310 LAIDVLDSP 318


>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
           From Rat
          Length = 343

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 48  SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESP-TVTKPPTP 106
           S EP V  + P +A   P   + +QPV F S +         N A + + P +V   P  
Sbjct: 250 SEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYT 309

Query: 107 RSLPVSPAP 115
            ++ V  +P
Sbjct: 310 LAIDVLDSP 318


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.125    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,701,944
Number of Sequences: 62578
Number of extensions: 181133
Number of successful extensions: 379
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 16
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)