Query psy15848
Match_columns 158
No_of_seqs 21 out of 23
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 22:54:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4542|consensus 25.7 18 0.00039 27.8 -0.5 11 135-145 76-86 (96)
2 KOG0608|consensus 17.1 4E+02 0.0086 27.6 6.4 47 49-98 438-484 (1034)
3 PF10161 DDDD: Putative mitoch 11.9 36 0.00078 25.3 -1.7 10 135-144 59-68 (79)
4 COG5567 Predicted small peripl 11.1 91 0.002 22.2 0.2 9 135-143 23-31 (58)
5 PF06553 BNIP3: BNIP3; InterP 9.4 1E+02 0.0022 26.0 0.0 24 112-135 64-88 (197)
6 PF15429 DUF4628: Domain of un 8.3 3.3E+02 0.0072 24.4 2.6 30 95-124 117-157 (273)
7 PHA01076 putative encapsidatio 4.8 3.2E+02 0.007 25.2 0.7 12 72-83 159-170 (378)
8 PF12441 DUF3680: Protein of u 4.7 2.8E+02 0.0061 18.0 0.2 8 70-77 31-38 (42)
9 PF06566 Chon_Sulph_att: Chond 4.7 8.5E+02 0.018 21.7 3.1 33 48-80 114-149 (253)
10 PF12431 CitT: Transcriptional 4.6 3.8E+02 0.0082 16.0 0.7 7 131-137 21-27 (30)
No 1
>KOG4542|consensus
Probab=25.73 E-value=18 Score=27.84 Aligned_cols=11 Identities=36% Similarity=0.135 Sum_probs=9.4
Q ss_pred CCcccCCCCCh
Q psy15848 135 KGASYLEPNMP 145 (158)
Q Consensus 135 kGaayle~~~~ 145 (158)
+||+|||||+-
T Consensus 76 n~A~~LEENdi 86 (96)
T KOG4542|consen 76 NFAALLEENDI 86 (96)
T ss_pred hHHHhhhhccc
Confidence 68999999963
No 2
>KOG0608|consensus
Probab=17.08 E-value=4e+02 Score=27.65 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=30.8
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCCCCCCCCccCCCCCCCCCCCC
Q psy15848 49 SEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESP 98 (158)
Q Consensus 49 ~~P~~PVWTP~sA~~SP~~eREFRPV~FESPtLsRr~~~~~~~~~~~~~p 98 (158)
--|..|.|-|+. +.+.++.|||+.|.+=.+---..+....-.+++++
T Consensus 438 ~~p~hp~~ipq~---~~a~~~d~rp~~~~~r~~e~~~la~~p~~~~PPp~ 484 (1034)
T KOG0608|consen 438 QQPLHPRWIPQP---SDANHPDPRPILFKPRNLEITMLARAPSEQPPPPP 484 (1034)
T ss_pred ccccCccccCCc---cccCCCCccccccccchhhhhhhhcCCccCCCCCC
Confidence 457789999998 88888899999997755443333333322334433
No 3
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=11.90 E-value=36 Score=25.26 Aligned_cols=10 Identities=50% Similarity=0.767 Sum_probs=7.9
Q ss_pred CCcccCCCCC
Q psy15848 135 KGASYLEPNM 144 (158)
Q Consensus 135 kGaayle~~~ 144 (158)
+||+|||+|+
T Consensus 59 ~~A~fLEe~d 68 (79)
T PF10161_consen 59 NGAQFLEEND 68 (79)
T ss_pred HHHHHHHHhc
Confidence 5788888875
No 4
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=11.13 E-value=91 Score=22.22 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=7.0
Q ss_pred CCcccCCCC
Q psy15848 135 KGASYLEPN 143 (158)
Q Consensus 135 kGaayle~~ 143 (158)
||..||-..
T Consensus 23 KGPLy~Ppa 31 (58)
T COG5567 23 KGPLYFPPA 31 (58)
T ss_pred CCCccCChh
Confidence 899998653
No 5
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=9.44 E-value=1e+02 Score=26.05 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCC
Q psy15848 112 SPAPSHCNVIPPPTPP-PSQGQIPK 135 (158)
Q Consensus 112 ~s~~s~~~~lp~~qnP-areGQlPk 135 (158)
+.++|+||..++++.| ...||+.-
T Consensus 64 sr~sS~~dSP~~s~~p~~~~~~~~~ 88 (197)
T PF06553_consen 64 SRGSSHCDSPPRSPSPPQNSPQIEF 88 (197)
T ss_dssp -------------------------
T ss_pred cCCCCcCCCCCCCCCCCCcCCCccc
Confidence 3377999999988877 55777754
No 6
>PF15429 DUF4628: Domain of unknown function (DUF4628)
Probab=8.35 E-value=3.3e+02 Score=24.43 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCc-----------ccCCCCCCCCCCCCCCC
Q psy15848 95 PESPTVTKPPTPR-----------SLPVSPAPSHCNVIPPP 124 (158)
Q Consensus 95 ~~~p~~t~~~t~~-----------s~p~~s~~s~~~~lp~~ 124 (158)
-++|+.|+++|+| +-||+|+.-+...++..
T Consensus 117 DPPPP~tkKRtPRALKTTQDMlISsqPVlSS~E~~~e~~~~ 157 (273)
T PF15429_consen 117 DPPPPITKKRTPRALKTTQDMLISSQPVLSSLEYGTESSPG 157 (273)
T ss_pred CCCCCcccccCcchhcchhhheeccCccccccccCCcCCcC
Confidence 4577788888777 44567666555444433
No 7
>PHA01076 putative encapsidation protein
Probab=4.75 E-value=3.2e+02 Score=25.16 Aligned_cols=12 Identities=50% Similarity=0.811 Sum_probs=10.2
Q ss_pred ccccCCCCCCCC
Q psy15848 72 QPVNFKSPTLPR 83 (158)
Q Consensus 72 RPV~FESPtLsR 83 (158)
-||+|.||.|+-
T Consensus 159 N~VNF~SPIL~~ 170 (378)
T PHA01076 159 NAVNFSSPILSN 170 (378)
T ss_pred CcccCCCcccch
Confidence 489999999984
No 8
>PF12441 DUF3680: Protein of unknown function (DUF3680) ; InterPro: IPR022148 This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length.
Probab=4.74 E-value=2.8e+02 Score=18.04 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=5.0
Q ss_pred ccccccCC
Q psy15848 70 KFQPVNFK 77 (158)
Q Consensus 70 EFRPV~FE 77 (158)
+|++|+|+
T Consensus 31 ~~~~v~f~ 38 (42)
T PF12441_consen 31 KAKPVRFP 38 (42)
T ss_pred cCeeeecc
Confidence 46666665
No 9
>PF06566 Chon_Sulph_att: Chondroitin sulphate attachment domain; InterPro: IPR010555 This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis []. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation [].
Probab=4.70 E-value=8.5e+02 Score=21.66 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=24.2
Q ss_pred CCCCCCCcccCCCCCCCccccc--cccc-ccCCCCC
Q psy15848 48 SSEPPVPVWTPKSAPSSPSAQR--KFQP-VNFKSPT 80 (158)
Q Consensus 48 ~~~P~~PVWTP~sA~~SP~~eR--EFRP-V~FESPt 80 (158)
..++.-|-||..|.++||.+.- .-.| |.=|||.
T Consensus 114 ~~pp~~pe~~eas~PPSpt~g~~~s~~Pelpkespl 149 (253)
T PF06566_consen 114 SVPPATPEATEASEPPSPTPGDKPSPGPELPKESPL 149 (253)
T ss_pred CCCCCCCCccccCCCCCCCCCCCCCccccCcccCce
Confidence 4788899999999999998873 4444 4444443
No 10
>PF12431 CitT: Transcriptional regulator
Probab=4.58 E-value=3.8e+02 Score=16.04 Aligned_cols=7 Identities=43% Similarity=0.956 Sum_probs=5.6
Q ss_pred CCCCCCc
Q psy15848 131 GQIPKGA 137 (158)
Q Consensus 131 GQlPkGa 137 (158)
+.||||.
T Consensus 21 ~~LPKGI 27 (30)
T PF12431_consen 21 ERLPKGI 27 (30)
T ss_pred cCCCCCc
Confidence 6699996
Done!