Query psy15848
Match_columns 158
No_of_seqs 21 out of 23
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 22:54:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3brd_D Protein LIN-12; protein 10.4 69 0.0024 19.2 0.3 7 53-59 14-20 (29)
2 1ym0_B Fibrinotic enzyme compo 6.4 1.6E+02 0.0054 17.3 0.7 8 53-60 2-9 (27)
3 1tt5_E Ubiquitin-conjugating e 6.0 1.7E+02 0.0056 17.1 0.6 12 146-157 7-18 (26)
4 3tcv_A GCN5-related N-acetyltr 3.4 4.8E+02 0.017 18.9 1.7 28 49-76 21-51 (246)
5 3bb6_A Uncharacterized protein 3.2 4.3E+02 0.015 19.7 1.2 18 3-20 22-41 (127)
6 3pzj_A Probable acetyltransfer 3.0 8.8E+02 0.03 16.3 2.6 28 49-76 16-46 (209)
7 1b4g_A Potassium channel; inac 2.9 9.3E+02 0.032 14.3 2.3 18 78-95 8-25 (30)
8 2enz_A NPKC-theta, protein kin 2.9 8E+02 0.027 15.0 2.1 12 70-81 14-25 (65)
9 2jmv_A Scytovirin; protein, su 2.8 1.1E+03 0.037 17.1 3.0 27 109-140 29-55 (95)
10 2kv9_B Integrin beta-3; platel 2.6 3.6E+02 0.012 18.7 0.1 12 129-140 11-22 (75)
No 1
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=10.36 E-value=69 Score=19.24 Aligned_cols=7 Identities=43% Similarity=1.165 Sum_probs=5.3
Q ss_pred CCcccCC
Q psy15848 53 VPVWTPK 59 (158)
Q Consensus 53 ~PVWTP~ 59 (158)
-|||+|-
T Consensus 14 A~vW~PP 20 (29)
T 3brd_D 14 ASVWMPP 20 (29)
T ss_pred ccccCCC
Confidence 4799885
No 2
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=6.40 E-value=1.6e+02 Score=17.29 Aligned_cols=8 Identities=50% Similarity=1.182 Sum_probs=5.6
Q ss_pred CCcccCCC
Q psy15848 53 VPVWTPKS 60 (158)
Q Consensus 53 ~PVWTP~s 60 (158)
+|||-|.-
T Consensus 2 ppvwypgg 9 (27)
T 1ym0_B 2 PPVWYPGG 9 (27)
T ss_dssp CCCSCTTS
T ss_pred CceeccCC
Confidence 57888754
No 3
>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}
Probab=6.04 E-value=1.7e+02 Score=17.11 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=7.9
Q ss_pred hHHhhhhhccCC
Q psy15848 146 EKQQQKDQNDNN 157 (158)
Q Consensus 146 ek~~~~~~~~~~ 157 (158)
-|++|+++.+++
T Consensus 7 lK~kk~~e~~~~ 18 (26)
T 1tt5_E 7 LKQQKKEEESAG 18 (26)
T ss_pred hhHHHHHhhccc
Confidence 466677777664
No 4
>3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus, brucellosis, acyl CO-A, arylami transferase; 1.75A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=3.39 E-value=4.8e+02 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=18.0
Q ss_pred CCCCCCcccCCCCCCCcccc--c-ccccccC
Q psy15848 49 SEPPVPVWTPKSAPSSPSAQ--R-KFQPVNF 76 (158)
Q Consensus 49 ~~P~~PVWTP~sA~~SP~~e--R-EFRPV~F 76 (158)
-....|-|.|...+..+.++ | .+||+.-
T Consensus 21 ~g~~~~~~~p~~~p~~~~l~~~~l~LR~~~~ 51 (246)
T 3tcv_A 21 SMTDLQNWTPRPKPERKIFEGRYVRLEPLNA 51 (246)
T ss_dssp ----CTTCCCCCCCCCCCEECSSEEEEECCH
T ss_pred CCCcCCCCCCcCCCCCEEEECCcEEEEECCc
Confidence 34456789998877776664 6 8888764
No 5
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=3.16 E-value=4.3e+02 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=12.6
Q ss_pred CCCcccccc--ccCCCcccC
Q psy15848 3 VPSKFVPVA--KTIKPGTWS 20 (158)
Q Consensus 3 ~~~~faP~f--K~~~~gVWS 20 (158)
+|.+|.... |.++.|||-
T Consensus 22 lP~~ll~~H~~~~Tk~Gtwg 41 (127)
T 3bb6_A 22 APAGIFERHLDKGTRPGVYP 41 (127)
T ss_dssp SCGGGGSSBCCTTCCTTEEE
T ss_pred ChHHHHhhccccCCCCCEEE
Confidence 466666666 457899994
No 6
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=3.04 E-value=8.8e+02 Score=16.31 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=19.1
Q ss_pred CCCCCCcccCCCCCCCcccc--c-ccccccC
Q psy15848 49 SEPPVPVWTPKSAPSSPSAQ--R-KFQPVNF 76 (158)
Q Consensus 49 ~~P~~PVWTP~sA~~SP~~e--R-EFRPV~F 76 (158)
.....|-|+|...+..+..+ | .+||+.-
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~l~lr~~~~ 46 (209)
T 3pzj_A 16 STPLLAGWRSAGKAPEAAIRGEAVSLQPLDA 46 (209)
T ss_dssp CCCCCTTCCCCCCCCSSCEECSSEEEEECCH
T ss_pred CCCCCCCCCCccCCCCeeeECCeEEEEECCc
Confidence 33455779998877666654 6 8888764
No 7
>1b4g_A Potassium channel; inactivation GATE, phosphorylation; HET: SEP; NMR {Homo sapiens} SCOP: j.12.1.1 PDB: 1b4i_A* 1ztn_A
Probab=2.92 E-value=9.3e+02 Score=14.34 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=13.0
Q ss_pred CCCCCCCccCCCCCCCCC
Q psy15848 78 SPTLPRKATGTPNAARKP 95 (158)
Q Consensus 78 SPtLsRr~~~~~~~~~~~ 95 (158)
|+-+.||.-.+...+.|-
T Consensus 8 Ss~~gRk~gnk~s~KaC~ 25 (30)
T 1b4g_A 8 SSYRGRKSGNKPPSKTCL 25 (30)
T ss_dssp CCSCSCSSSCCCSSCCCS
T ss_pred hhhhcccccCCCCchhhh
Confidence 677888888777665554
No 8
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=2.88 E-value=8e+02 Score=15.00 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=9.5
Q ss_pred ccccccCCCCCC
Q psy15848 70 KFQPVNFKSPTL 81 (158)
Q Consensus 70 EFRPV~FESPtL 81 (158)
.|+...|..||.
T Consensus 14 ~F~~~~~~~pt~ 25 (65)
T 2enz_A 14 RFKVYNYKSPTF 25 (65)
T ss_dssp CEEECCCCSCCB
T ss_pred ccEeEcCCCCcC
Confidence 788888888764
No 9
>2jmv_A Scytovirin; protein, sugar binding protein, antiviral protein; NMR {Scytonema varium} PDB: 2qsk_A 2qt4_A
Probab=2.78 E-value=1.1e+03 Score=17.07 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=19.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy15848 109 LPVSPAPSHCNVIPPPTPPPSQGQIPKGASYL 140 (158)
Q Consensus 109 ~p~~s~~s~~~~lp~~qnPareGQlPkGaayl 140 (158)
+-+-|+.++|.-+.|.+.|. |||++|.
T Consensus 29 ~rtcss~g~cqg~sr~~~p~-----p~~p~yc 55 (95)
T 2jmv_A 29 ARTCSSSGFCQGTSRKPDPG-----PKGPTYC 55 (95)
T ss_dssp SCBCTTSSSSBSCSCCCCSS-----CSSBBCS
T ss_pred cceecccceeccccCCCCCC-----CCCcchh
Confidence 33556678998888777764 4777775
No 10
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=2.56 E-value=3.6e+02 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=0.6
Q ss_pred CCCCCCCCcccC
Q psy15848 129 SQGQIPKGASYL 140 (158)
Q Consensus 129 reGQlPkGaayl 140 (158)
+.|-+|+|.+.|
T Consensus 11 ~~~~~~~~~~~~ 22 (75)
T 2kv9_B 11 SSGLVPRGSHMS 22 (75)
T ss_dssp -----------C
T ss_pred cCCcccCchhHH
Confidence 458889998876
Done!