Query psy15848
Match_columns 158
No_of_seqs 21 out of 23
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 22:54:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ujoa_ a.40.1.1 (A:) Transgel 15.3 26 0.0019 24.3 1.2 12 53-64 132-143 (144)
2 d1v7ca_ c.79.1.1 (A:) Threonin 5.7 1E+02 0.0076 21.8 1.4 19 65-83 4-24 (351)
3 d2o39c1 g.18.1.1 (C:1-62) CD46 4.6 1.4E+02 0.01 16.9 1.2 10 14-23 47-56 (62)
4 d3c8da2 c.69.1.2 (A:151-396) E 4.5 1.1E+02 0.0081 20.2 0.8 28 53-85 2-29 (246)
5 d1lmra_ g.3.6.3 (A:) ADO1 {Ass 3.8 2.8E+02 0.02 15.5 2.1 16 129-144 2-17 (35)
6 d1bb8a_ d.10.1.1 (A:) DNA-bind 3.1 1.6E+02 0.011 18.9 0.5 24 132-155 47-71 (71)
7 d2ba0d1 d.14.1.4 (D:10-153) Ex 3.1 1.4E+02 0.01 18.9 0.2 14 70-83 16-29 (144)
8 d2nn6f1 d.14.1.4 (F:29-175) Ex 3.0 2.7E+02 0.02 17.0 1.6 14 70-83 7-20 (147)
9 d1kf6a1 a.7.3.1 (A:443-576) Fu 2.7 1.8E+02 0.013 19.1 0.4 9 70-78 122-130 (134)
10 d1udsa1 d.14.1.4 (A:2-150) Rib 2.6 1.6E+02 0.012 18.6 0.1 14 70-83 9-22 (149)
No 1
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.29 E-value=26 Score=24.33 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=9.9
Q ss_pred CCcccCCCCCCC
Q psy15848 53 VPVWTPKSAPSS 64 (158)
Q Consensus 53 ~PVWTP~sA~~S 64 (158)
-|.|+|++|++|
T Consensus 132 ~P~~~pk~~ps~ 143 (144)
T d1ujoa_ 132 DPNWFMKSGPSS 143 (144)
T ss_dssp CSTTTCSSSCCC
T ss_pred CCCcCCCCCCCC
Confidence 378999998876
No 2
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}
Probab=5.66 E-value=1e+02 Score=21.80 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=15.2
Q ss_pred ccccc--ccccccCCCCCCCC
Q psy15848 65 PSAQR--KFQPVNFKSPTLPR 83 (158)
Q Consensus 65 P~~eR--EFRPV~FESPtLsR 83 (158)
|+.+| +|.||.+..|.+++
T Consensus 4 ~~~~~~~~~lp~~~~~~~i~~ 24 (351)
T d1v7ca_ 4 PLIERYRNLLPVSEKTPVISL 24 (351)
T ss_dssp CHHHHTGGGSSCCTTSCCCCS
T ss_pred chHHHHHHHCCCCCCCCcccc
Confidence 45666 99999999887776
No 3
>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.60 E-value=1.4e+02 Score=16.85 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=7.3
Q ss_pred CCCcccCCCC
Q psy15848 14 IKPGTWSPAT 23 (158)
Q Consensus 14 ~~~gVWSPg~ 23 (158)
...|+|||.+
T Consensus 47 ~~ng~WSp~~ 56 (62)
T d2o39c1 47 DRNHTWLPVS 56 (62)
T ss_dssp CSSSSCCCCC
T ss_pred CCCCEECCCC
Confidence 4579999854
No 4
>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]}
Probab=4.51 E-value=1.1e+02 Score=20.16 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=19.1
Q ss_pred CCcccCCCCCCCcccccccccccCCCCCCCCCc
Q psy15848 53 VPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKA 85 (158)
Q Consensus 53 ~PVWTP~sA~~SP~~eREFRPV~FESPtLsRr~ 85 (158)
+|-|+...++.+|+ +-|.|.|+.|-+..
T Consensus 2 ~~~w~~p~~~~~~~-----~~~~~~S~~lg~~~ 29 (246)
T d3c8da2 2 QPGWDCPQAPEIPA-----KEIIWKSERLKNSR 29 (246)
T ss_dssp CTTTTSCCCCSSCC-----EEEEEEETTTTEEE
T ss_pred CCCCCCCCCCCCCc-----EEEEEECCCCCCEE
Confidence 46687777766666 34568888887554
No 5
>d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}
Probab=3.78 E-value=2.8e+02 Score=15.53 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=12.9
Q ss_pred CCCCCCCCcccCCCCC
Q psy15848 129 SQGQIPKGASYLEPNM 144 (158)
Q Consensus 129 reGQlPkGaayle~~~ 144 (158)
-+.-||+|.--|-+|.
T Consensus 2 d~dclprgskclgenk 17 (35)
T d1lmra_ 2 DDDCLPRGSKCLGENK 17 (35)
T ss_dssp CSCCCCTTCCCSSCCC
T ss_pred ccccccccccccccch
Confidence 4667999999998874
No 6
>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase {Enterococcus faecalis [TaxId: 1351]}
Probab=3.08 E-value=1.6e+02 Score=18.95 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=15.2
Q ss_pred CCCCCcccC-CCCChhHHhhhhhcc
Q psy15848 132 QIPKGASYL-EPNMPEKQQQKDQND 155 (158)
Q Consensus 132 QlPkGaayl-e~~~~ek~~~~~~~~ 155 (158)
-+|+|-.-+ .=-+-||+-++|+.|
T Consensus 47 k~p~Gk~d~~sLRekEk~i~kD~~D 71 (71)
T d1bb8a_ 47 RVPAGKRDCISLREKIAELQKDIHD 71 (71)
T ss_dssp CCCTTCCCCCCHHHHHHHHHHHTTC
T ss_pred cccccccchHhHHHHHHHHhhhccC
Confidence 356664333 334678888888876
No 7
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.06 E-value=1.4e+02 Score=18.90 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=12.0
Q ss_pred ccccccCCCCCCCC
Q psy15848 70 KFQPVNFKSPTLPR 83 (158)
Q Consensus 70 EFRPV~FESPtLsR 83 (158)
|+|||.++.=+|++
T Consensus 16 e~R~i~i~~g~l~~ 29 (144)
T d2ba0d1 16 ELRPIKIEASVLKR 29 (144)
T ss_dssp CCCCEEEEECCCSS
T ss_pred CccCeEEEECCCCC
Confidence 89999998888776
No 8
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.01 E-value=2.7e+02 Score=17.03 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.5
Q ss_pred ccccccCCCCCCCC
Q psy15848 70 KFQPVNFKSPTLPR 83 (158)
Q Consensus 70 EFRPV~FESPtLsR 83 (158)
||||+..+-=++++
T Consensus 7 e~R~i~i~~gvi~~ 20 (147)
T d2nn6f1 7 RLRPVYARAGLLSQ 20 (147)
T ss_dssp CCCCCCCCCSCCSS
T ss_pred CccceEEEeCCCCC
Confidence 89999998777765
No 9
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=2.66 E-value=1.8e+02 Score=19.07 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=7.5
Q ss_pred ccccccCCC
Q psy15848 70 KFQPVNFKS 78 (158)
Q Consensus 70 EFRPV~FES 78 (158)
+|+||.|+.
T Consensus 122 ~~~pV~~~~ 130 (134)
T d1kf6a1 122 EYSDVKITT 130 (134)
T ss_dssp EEEECCCSS
T ss_pred Eecccccee
Confidence 899998864
No 10
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]}
Probab=2.61 E-value=1.6e+02 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.429 Sum_probs=11.8
Q ss_pred ccccccCCCCCCCC
Q psy15848 70 KFQPVNFKSPTLPR 83 (158)
Q Consensus 70 EFRPV~FESPtLsR 83 (158)
||||+.++.=+|++
T Consensus 9 e~R~i~i~~g~l~~ 22 (149)
T d1udsa1 9 QLRPVSIQRDFLEY 22 (149)
T ss_dssp CCCCEEEEECCSSS
T ss_pred CccCeEEEeCCCCC
Confidence 89999998777766
Done!