RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15848
(158 letters)
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 36.7 bits (85), Expect = 0.003
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP 110
P P +A + + P AA P V + TP +P
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPST---------RPKAAAAANIPPKEPVRETATPPPVP 413
Query: 111 VSPAPSHCNVIPPPTPPPSQGQIPKG-ASYLEPNMPEKQQQK 151
P P P ++ IP P P K+++K
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455
Score = 32.1 bits (73), Expect = 0.092
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
++ P PV P APS+ + K P AT P R P P +
Sbjct: 372 TAAAPSPV-RPTPAPSTRPKAAAAANIPPKEPV-RETATPPPVPPRPVAPPVPHTPESAP 429
Query: 108 SLPVSPAPSH-CNVIPPPTPPPSQ 130
L + P PP PP +
Sbjct: 430 KLTRAAIPVDEKPKYTPPAPPKEE 453
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 35.3 bits (82), Expect = 0.010
Identities = 12/85 (14%), Positives = 21/85 (24%)
Query: 56 WTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP 115
+ P S + +A P A P + PP P + + A
Sbjct: 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95
Query: 116 SHCNVIPPPTPPPSQGQIPKGASYL 140
P+ + + L
Sbjct: 96 PAAPPAAAAAAAPAAAAVEDEVTPL 120
Score = 28.7 bits (65), Expect = 1.7
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 78 SPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGA 137
+ + A K + PP + P P+ P+ P A
Sbjct: 49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA---AAAAAAAAPAAP--PAAA 103
Query: 138 SYLEPNMPEKQQQ 150
+ P + +
Sbjct: 104 AAAAPAAAAVEDE 116
Score = 27.9 bits (63), Expect = 2.4
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTK-PPTPRSL 109
T +A ++ +A K+P P A A P P +
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98
Query: 110 PVSPAPSHCNVIPPPTPPPSQGQIPKGAS 138
P + A + P + +GA+
Sbjct: 99 PPAAAAA---AAPAAAAVEDEVTPLRGAA 124
Score = 27.5 bits (62), Expect = 3.9
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 5/78 (6%)
Query: 78 SPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGA 137
+PT A +A + P + AP+ PP P + A
Sbjct: 43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA-----APPKPAAAAAAAAAPA 97
Query: 138 SYLEPNMPEKQQQKDQND 155
+ D
Sbjct: 98 APPAAAAAAAPAAAAVED 115
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 35.1 bits (80), Expect = 0.011
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 58 PKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSH 117
P+ + +P KSP LP + P + ++PESP K P P P SP
Sbjct: 591 PEEPKKPKRPRSAQRPTRPKSPKLP-ELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPE 649
Query: 118 CNVIPPPTPPPSQGQIPKGASYLE 141
I PP + P + E
Sbjct: 650 GPKIIKSPKPPKSPKPPFDPKFKE 673
Score = 28.5 bits (63), Expect = 1.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 25 PEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRK 84
PE + E ++ KR S++ P +PK + +P + KSP P
Sbjct: 579 PEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPP 638
Query: 85 ATGTPNAARKPESPTVTKPPTPRSLPVSP 113
P++ +PE P + K P P P P
Sbjct: 639 PQ-RPSSPERPEGPKIIKSPKPPKSPKPP 666
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 34.6 bits (80), Expect = 0.012
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 95 PESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPS 129
E + PP P ++P + PS P PP +
Sbjct: 113 EEILASSPPPIPEAVPATAEPSESANAQFPAPPLT 147
Score = 26.5 bits (59), Expect = 7.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 46 LDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESP 98
L SS PP+P P +A S SA F +P L R +P A K +
Sbjct: 116 LASSPPPIPEAVPATAEPSESA-----NAQFPAPPLTRAVCQSP-AKSKRFTT 162
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 33.2 bits (76), Expect = 0.041
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 43 NKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTK 102
K D+S P K + P+A + SP+ + + +A + +
Sbjct: 364 QKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGT 423
Query: 103 PPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPK-----GASYLEPNMPE-KQQQKDQNDN 156
PPT P + P + P P+Q + K S L P+ Q++ +Q
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483
Query: 157 NI 158
NI
Sbjct: 484 NI 485
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.094
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 10/141 (7%)
Query: 2 PVPSKFVPVAKTIKPGTWSPATTP--EVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPK 59
P P + + + G + A++P +R++ +V +T ++PP P TP+
Sbjct: 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT------SLADPPPPPPTPE 2709
Query: 60 SAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCN 119
AP + + P + P P P P + P + A
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769
Query: 120 VIP--PPTPPPSQGQIPKGAS 138
P P PP + P AS
Sbjct: 2770 APPAAPAAGPPRRLTRPAVAS 2790
Score = 31.8 bits (72), Expect = 0.13
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 10/131 (7%)
Query: 4 PSKFVPVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPS 63
P+ +P + +P P P L SV + +R S P +AP+
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA----AKPAAPA 2879
Query: 64 SPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPP 123
P +R +P +S P +P++P +P P P P PP
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP------PP 2933
Query: 124 PTPPPSQGQIP 134
P PP Q +
Sbjct: 2934 PPPPRPQPPLA 2944
Score = 31.1 bits (70), Expect = 0.26
Identities = 24/124 (19%), Positives = 33/124 (26%), Gaps = 5/124 (4%)
Query: 34 DSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAAR 93
D V L + P P ++ + P P A G R
Sbjct: 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR 2865
Query: 94 KPESPTVTKPPTPRSLPVS----PAPSHCNVIPPPTPPPSQGQIPKGASYLEPNMPEKQQ 149
P KP P PV PA S + PP + P+ + P +
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSR-STESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Query: 150 QKDQ 153
Q
Sbjct: 2925 PPPQ 2928
Score = 30.7 bits (69), Expect = 0.39
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 6/133 (4%)
Query: 2 PVPSKFVPVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSA 61
P PS+ ++ +P + P D D+ P P +P A
Sbjct: 2575 PRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634
Query: 62 PSSP------SAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP 115
+ P + +P + +P + R ++ + + P R+ +
Sbjct: 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGS 2694
Query: 116 SHCNVIPPPTPPP 128
PPP PP
Sbjct: 2695 LTSLADPPPPPPT 2707
Score = 28.4 bits (63), Expect = 1.8
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 51 PPVPVWTPKSAP--SSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRS 108
PP+P P +AP S P + +P + R+ P +AR P +P +
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR-PRAPVDDRGDPRGP 2611
Query: 109 LPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLEPNMPEKQQQKD 152
P SP P + PP P PS P ++ + D
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655
Score = 28.0 bits (62), Expect = 2.7
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 52 PVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPV 111
P + A +S S R+ P + P A SP PP + P
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837
Query: 112 SPAPSHCNVIPPPTPPPSQGQIPKG 136
+P P PPP+ P P G
Sbjct: 2838 APPPP--PGPPPPSLPLGGSVAPGG 2860
Score = 27.6 bits (61), Expect = 4.2
Identities = 19/92 (20%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 54 PVWTPKS-----------APSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTK 102
P WTP S + RK + + R G P
Sbjct: 357 PTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVP 416
Query: 103 PPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIP 134
P P +P S P +P P G P
Sbjct: 417 TPAPTPVPASAPPPPATPLPSAEPGSDDGPAP 448
Score = 26.8 bits (59), Expect = 5.8
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 3/114 (2%)
Query: 15 KPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPV 74
+P + SPA P + + + PP P+ P +
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ---PERPPQPQAPPPPQPQP 2921
Query: 75 NFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPP 128
P P+ P + P +PT P P ++P P
Sbjct: 2922 QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 31.7 bits (72), Expect = 0.15
Identities = 28/124 (22%), Positives = 39/124 (31%), Gaps = 10/124 (8%)
Query: 21 PATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSS---PSAQRKFQPVNFK 77
TP + SLE+ ++ ++ + +PP V P P QP +
Sbjct: 145 QPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYP 204
Query: 78 SPTLPRKATGTPNAARKPESPTVTKPPTPRSLP-------VSPAPSHCNVIPPPTPPPSQ 130
P P S +PP P LP P +PPP P P Q
Sbjct: 205 QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQ 264
Query: 131 GQIP 134
Q
Sbjct: 265 QQQQ 268
Score = 27.8 bits (62), Expect = 2.5
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP 110
P+ +PS P+ P + + P PP P+
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPL----PPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQ 264
Query: 111 VSPAPSHCNVIPPPTPPPSQGQIPKGASYLEPNMPEKQQQKDQNDNN 157
P PPP P+ P++ Q
Sbjct: 265 QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 31.6 bits (72), Expect = 0.17
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
+ P + +AP + + +P A P A +P P
Sbjct: 403 PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA--PAAVALAPAPPAQAAPETV 460
Query: 108 SLPVSPAPSHCNVIPPPTPPPSQGQIP 134
++PV AP P P +
Sbjct: 461 AIPVRVAPEPAVASAAPAPAAAPAAAR 487
Score = 27.4 bits (61), Expect = 4.4
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 6/85 (7%)
Query: 58 PKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSH 117
P +A + + K K+P P A + + + AP
Sbjct: 366 PAAAAEAAAPAEK------KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA 419
Query: 118 CNVIPPPTPPPSQGQIPKGASYLEP 142
P P + A+
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAA 444
Score = 26.6 bits (59), Expect = 6.4
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
++ K P+ P A P +P A P AA + PP
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAA---PA--AAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421
Query: 108 -SLPVSPAPSHCNVIPPPTPPPSQGQIP 134
PV+ + P P + P
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAP 449
Score = 26.6 bits (59), Expect = 8.2
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 52 PVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPV 111
PV AP++ A P P A P AA +P P ++ +
Sbjct: 393 PVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447
Query: 112 SPAPSHCNV---------IPPPTPPPSQGQIPKGAS 138
+PAP + P S P A
Sbjct: 448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 31.4 bits (71), Expect = 0.20
Identities = 23/117 (19%), Positives = 30/117 (25%), Gaps = 9/117 (7%)
Query: 13 TIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQ 72
IKP S EDS D S F
Sbjct: 442 NIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCG------EESGHLPNNPF- 494
Query: 73 PVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPS 129
N TL +P + PT ++P + S S+ I P P P+
Sbjct: 495 -FNKLKLTLSSIPPLSPRQSIITL-PTPSRPASRISSLSLRLGSYSGSIVSPPPYPT 549
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 31.1 bits (71), Expect = 0.20
Identities = 20/84 (23%), Positives = 29/84 (34%)
Query: 59 KSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHC 118
+S +S +A+ P P P P A P +P P ++ +PA
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572
Query: 119 NVIPPPTPPPSQGQIPKGASYLEP 142
+ PPP P P S E
Sbjct: 573 DSSPPPPIPEEPTPSPTKDSSPEE 596
Score = 29.9 bits (68), Expect = 0.49
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 89 PNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQI-------PKGASYLE 141
N A+ P P + PP + P+ + PP PPP+ Q S
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 142 PNMPEKQQQKDQND 155
P +PE+ D
Sbjct: 578 PPIPEEPTPSPTKD 591
Score = 29.5 bits (67), Expect = 0.77
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 74 VNFKSPTLP-RKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQ 132
+N +S + TP +K P PP P+ +P P+ PPP PP +
Sbjct: 508 LNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPT-----PPPPPPTATQA 562
Query: 133 IPKGASYLEPNMPEKQQQKDQNDNN 157
+ + + ++ +
Sbjct: 563 SSNAPAQIPADSSPPPPIPEEPTPS 587
Score = 27.2 bits (61), Expect = 4.8
Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 63 SSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIP 122
S S K P KSP P P PT PP + S AP+ IP
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ---IP 571
Query: 123 PPTPPPSQGQIPKGASYLEPNMPEKQQQKDQN 154
+ PP S + + PE+ + +N
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEEIDKAAKN 603
Score = 26.5 bits (59), Expect = 8.1
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 58 PKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSH 117
+ A +S A P P + + A SP K P +P P
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEP- 424
Query: 118 CNVIPPPTPPPSQGQ 132
P P +
Sbjct: 425 ---SPTPPANAANAP 436
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 30.9 bits (70), Expect = 0.24
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 18/108 (16%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTP-----NAARKPESPTVTKPPT 105
P+ P+ + + A P NAA+KP V PP
Sbjct: 410 NGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMN--AVRAPSRNAQNAAQKPPMQPVMYPPN 467
Query: 106 PRSLPVSPAPSHCNVIPPPTPPPS---QGQIPKGASYLEPNMPEKQQQ 150
+SLP+S P P + GQ K A L P+ Q+Q
Sbjct: 468 YQSLPLSQ--------DLPQPQSTASQGGQNKKLAQVLASATPQMQKQ 507
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 31.1 bits (70), Expect = 0.27
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 60 SAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKP-ESPTVTKPPTPRSLPVSPAPSHC 118
S SP ++K + P +P E P+ PTP P
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVAR---- 438
Query: 119 NVIPPPTPPPSQGQIPKGASYLEPNM 144
P PP Q P+ + +P +
Sbjct: 439 ---SAPLPPSPQASAPRNVASGKPGV 461
Score = 26.8 bits (59), Expect = 5.3
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 20/106 (18%)
Query: 32 LEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNA 91
+ S + K+ + P P P P+ P A P +P +
Sbjct: 380 VAPSPAGSPDVKKKAPEPDLPQPDRHP--GPAKPEA-----------PGARPAELPSPAS 426
Query: 92 ARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGA 137
A PE +PP RS P+ P+P P + + G+
Sbjct: 427 APTPEQ----QPPVARSAPLPPSPQAS---APRNVASGKPGVDLGS 465
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 30.8 bits (70), Expect = 0.29
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 85 ATGTPNAARKPESPTVTKP-PTPRSLPVSPAPSHCNVIPPPTPPPSQG 131
AT P +R ++ P + +PAP PP PP +G
Sbjct: 273 ATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 30.7 bits (69), Expect = 0.33
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 23 TTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLP 82
+TP V+ S D +E + V +AP P+A + P +P
Sbjct: 359 STPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAH-DETEPEVP 417
Query: 83 RKATGTPNAARKPESPTVTKP 103
KA P+ A+ P+ V P
Sbjct: 418 EKAAPIPDPAK-PDELAVAGP 437
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 30.3 bits (68), Expect = 0.40
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 58 PKSAPSSPSAQRKFQPVNFKSP--TLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP 115
P S P P P +P LPR + P P P S+P P P
Sbjct: 191 PSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP----SAPPASIPAPPIP 246
Query: 116 SHCNVIPPPTPPPSQGQIP 134
+ PP PP Q IP
Sbjct: 247 PVIQYVAPPPVPPPQPIIP 265
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.0 bits (68), Expect = 0.48
Identities = 15/83 (18%), Positives = 23/83 (27%)
Query: 56 WTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP 115
+ AP + + + V + P +P P + P AP
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698
Query: 116 SHCNVIPPPTPPPSQGQIPKGAS 138
+ P TPP Q P
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQP 721
Score = 27.6 bits (62), Expect = 3.3
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 2/130 (1%)
Query: 16 PGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVN 75
P S A P V + E K V + P A P+
Sbjct: 636 PAEASAAPAPGVA--APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693
Query: 76 FKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPK 135
+ +PP +P+P+ + +P P P
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753
Query: 136 GASYLEPNMP 145
+ P
Sbjct: 754 APAQPPPPPA 763
Score = 27.3 bits (61), Expect = 4.7
Identities = 21/123 (17%), Positives = 36/123 (29%)
Query: 16 PGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVN 75
P A + ++ D+ + + P P P A + A
Sbjct: 643 PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPA 702
Query: 76 FKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPK 135
P AA+ P++ P+P + P P + P P P+Q P
Sbjct: 703 PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762
Query: 136 GAS 138
+
Sbjct: 763 APA 765
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 29.8 bits (67), Expect = 0.60
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 22 ATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTL 81
E R+ + + NK EPP T S PS+PS +R + + +P+L
Sbjct: 430 EAQWERHRQEKQRAKARKKLANKTSTVMEPP-YGSTESSVPSTPSTRRNDRNITSNTPSL 488
Query: 82 PRKA-TGTPNAARKPESPTVT-----KPPTPRSLPVSPAPS 116
R + +++ + + K TPR L P
Sbjct: 489 KRTPNLTKSSLSQEASLISKSTGNTHKHSTPRRLTTLPKLP 529
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.0 bits (67), Expect = 0.63
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 57 TPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR--------- 107
+P +S +A + P++ S R A+ T K S + P TPR
Sbjct: 334 SPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQV 393
Query: 108 ----------SLPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLEP 142
++P +P+PS + P P PS +P G L P
Sbjct: 394 HHCVVVKPAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQPDLHP 438
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 29.7 bits (67), Expect = 0.64
Identities = 23/138 (16%), Positives = 34/138 (24%), Gaps = 18/138 (13%)
Query: 11 AKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRK 70
K +K G + ED+ T + + +P PSS
Sbjct: 139 HKALKEGE--DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGV-- 194
Query: 71 FQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQ 130
P+ P + PP P S P P+PPP
Sbjct: 195 --------PSFPSPPEDPS------SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGP 240
Query: 131 GQIPKGASYLEPNMPEKQ 148
P P + +
Sbjct: 241 AAPPPPPVQQVPPLSTAK 258
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 29.7 bits (67), Expect = 0.73
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 60 SAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP--VSPAPSH 117
S P+S S + S + P +T RKP + ++ P+ LP SP+P
Sbjct: 4 SNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPS 63
Query: 118 CNVIPPPTPPPSQ 130
+ P T Q
Sbjct: 64 VTLPPAATTQTPQ 76
Score = 27.4 bits (61), Expect = 4.0
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
Query: 80 TLPRKATGTPNAARKPESPTVTKPPTPRSL---PVSPAPSHCNVIPPPTPPPSQGQIPKG 136
+ T + S + ++ P S P PS +++ P+ P
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 137 ASYLEPNMPEKQQQKDQN 154
+ Q N
Sbjct: 61 PPSVTLPPAATTQTPQLN 78
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 29.8 bits (67), Expect = 0.75
Identities = 15/83 (18%), Positives = 19/83 (22%), Gaps = 1/83 (1%)
Query: 49 SEPPVPVWTPKSAPSSPSA-QRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
PP PS +PV P + S +
Sbjct: 115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174
Query: 108 SLPVSPAPSHCNVIPPPTPPPSQ 130
L + PP PPPS
Sbjct: 175 PLSSPEETARAPSSPPAEPPPST 197
Score = 26.7 bits (59), Expect = 7.9
Identities = 16/83 (19%), Positives = 27/83 (32%)
Query: 46 LDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPT 105
+ + P P P + + + + S + A+ + P P+ PP
Sbjct: 59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPP 118
Query: 106 PRSLPVSPAPSHCNVIPPPTPPP 128
P P SP PS + P
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPV 141
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 29.4 bits (66), Expect = 0.75
Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 52 PVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPV 111
PVPV P R PV + +A P P PP
Sbjct: 662 PVPVGMPAHTARPSRVAR-GDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAA 720
Query: 112 SPAPSHCNVIPPPTPPP 128
PAP ++I PT PP
Sbjct: 721 GPAPCGSSLIASPTAPP 737
>gnl|CDD|236754 PRK10760, PRK10760, murein hydrolase B; Provisional.
Length = 359
Score = 28.9 bits (65), Expect = 0.95
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 109 LPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLEP 142
LP+ + C+ P PT + P G LEP
Sbjct: 10 LPLFVLLAACSSKPKPTETATTTGTPSGGFLLEP 43
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 29.1 bits (65), Expect = 0.97
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 4 PSKFVPVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPS 63
P+ V KP +P E +V + R S P ++PS
Sbjct: 395 PASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPS 454
Query: 64 SPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPP 123
P+A P S + P+ A + PP P+SP + ++ PP
Sbjct: 455 -PTAPTGVSP----SVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPP 509
Query: 124 PTPPPS 129
+P P+
Sbjct: 510 TSPSPA 515
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 29.1 bits (66), Expect = 1.0
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 52 PVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPV 111
P P P+SA + SAQ P +P P +A + T + L
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425
Query: 112 SPA-PSHCNVIPPPTPPPSQGQIPKGASYLEPNMPEKQQQ 150
P+ + + + +
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPA 465
Score = 27.1 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 14/49 (28%)
Query: 82 PRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQ 130
P P + +P + T P V PPP P Q
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQ 409
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 29.1 bits (65), Expect = 1.1
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 81 LPRKAT--GTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGAS 138
LP+ T P P+P S+ + + + P S + GA+
Sbjct: 258 LPKGTTQEAKVTTVVTPPQADAA--PSPLSVRPAGSSGSASGSTQ--IPTSGSVLGPGAA 313
Query: 139 YLEPNMPEKQQQKDQNDN 156
E + Q D+ D+
Sbjct: 314 ATELQQVVQLQNYDEEDD 331
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 80 TLPRKATGTPNAARKPESPTVTKPPTPR-SLPVSPAPSHCNVIPPPTPPPSQGQIPKGAS 138
+ A P +P PV PAP+ P P + +
Sbjct: 49 KAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPA 108
Query: 139 YLEPNMP 145
EP P
Sbjct: 109 PAEPVEP 115
>gnl|CDD|233542 TIGR01713, typeII_sec_gspC, type II secretion system protein C.
This model represents GspC, protein C of the main
terminal branch of the general secretion pathway, also
called type II secretion. This system transports folded
proteins across the bacterial outer membrane and is
widely distributed in Gram-negative pathogens [Protein
fate, Protein and peptide secretion and trafficking].
Length = 259
Score = 28.3 bits (63), Expect = 1.9
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 49 SEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRS 108
S P V T + QP + K L + K +V P +P S
Sbjct: 23 SLPINFVPTIVVSKQISVNLANLQPSDLKLFELFGVFNEKSVSEVKTSPVSVNAPVSPLS 82
Query: 109 LPVS 112
L ++
Sbjct: 83 LKLT 86
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 28.4 bits (63), Expect = 2.0
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 18/114 (15%)
Query: 24 TPEVQRKSLED-SVKEVTEQNKRLDSSE--PPVPVWTPKSAPSSPSAQRKFQPVNFKSPT 80
PE + K ++ + +E E +R E P P P+
Sbjct: 459 LPEKEAKESKEAAGEEAREGRRRGPRRESKSQEPSGGESPNPELPANNNNSNS------- 511
Query: 81 LPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIP 134
A RK + T T + + P +P + PP + P
Sbjct: 512 ---NNNNNNGADRKEAAATTGNATTTSNGSGTSVP-----LPVSSEPPQHKEGP 557
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 28.2 bits (63), Expect = 2.1
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 77 KSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPS 129
+ P P +A P S + PPT S P S ++ P TPPP+
Sbjct: 541 RRRGPPYAEPPEPVSADTPPSLQLDDPPTFPSALPLPHASGLSL--PGTPPPN 591
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.2 bits (63), Expect = 2.2
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 81 LPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVI---PPPTPPPSQGQIPKGA 137
L R A P+AA +P P P + P P + P P P P P
Sbjct: 377 LERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436
Query: 138 S 138
S
Sbjct: 437 S 437
Score = 28.2 bits (63), Expect = 2.2
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 23/116 (19%)
Query: 36 VKEVTEQNKRLDS--SEPPVPVW-TPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAA 92
V E+ ++ + L+ PP W P A + P A AA
Sbjct: 367 VSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPP--------VPPAAPARPAA 418
Query: 93 RKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQ-------GQIPKGASYLE 141
+P P P + PA S + G+ P + LE
Sbjct: 419 ARP-----APAPAPPAAAAPPARSADPAAAASAGDRWRAFVAFVKGKKPALGASLE 469
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 27.9 bits (62), Expect = 2.3
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 60 SAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVS 112
+ P P R+ + + P R+ G P P + P P S
Sbjct: 188 AVPLEPRTTRRGRRRGARRPRSRRRPRGGAAGPPVPAEPAAPERPPADPTPTS 240
>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 28.1 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 8 VPVAKTIKPGTWS--PATTPEVQRKSLEDSVKEVTEQNKRLDSS 49
P+AK KPG W + + R+ LE+ +E+ E+ KR S
Sbjct: 160 PPMAKKGKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDS 203
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 28.0 bits (62), Expect = 2.6
Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLP-RKATGTPNAARKPESPTVTKPPTP 106
S P +S SPS +PV +P R +A +P P P
Sbjct: 3 SVGLPTAGSPLRSHIGSPS-----KPVVGSTPFSRSRIPAAVDSADETSMAPPPPPSPLP 57
Query: 107 RSLPVSP-----APSHCNVIPPPTPPPSQGQIPKGASYL 140
L VSP + +P T G IP+ YL
Sbjct: 58 L-LKVSPNSLQYPAGYLGAVPERTNEAENGSIPEAMEYL 95
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 27.8 bits (62), Expect = 3.1
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 11/90 (12%)
Query: 38 EVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPES 97
+E D P S ++ T+PR G KP+S
Sbjct: 42 STSEATSEDDDDLYPPR--ETGSGGGVATSTI---------YTVPRPPRGPEQTLDKPDS 90
Query: 98 PTVTKPPTPRSLPVSPAPSHCNVIPPPTPP 127
++ P PV P P
Sbjct: 91 LPASRELPPGPTPVPPGGFRGASSPRLGAD 120
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 27.6 bits (61), Expect = 3.5
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
S +P +P+ P+ P+ F P +P + T +P P + T T
Sbjct: 185 SCDPALPLSAPRLGPAD-----VFVPA---TPRPTPRTTASPETTPTPSTTTSPPSTTIP 236
Query: 108 SLPVSPAPSHCNVIP-----PPTPPPSQGQIP 134
+ + A P P P P G+ P
Sbjct: 237 APSTTIAAPQAGTTPEAEGTPAPPTPGGGEAP 268
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 27.5 bits (61), Expect = 3.5
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 86 TGTPNAARKPESPTVTKPPTPRSLPV--SPAPSHCNVIPPPTPPPSQGQIPKGASYLEPN 143
GT A P + PP P P PP PP P + L
Sbjct: 897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRET 956
Query: 144 M 144
+
Sbjct: 957 L 957
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 27.3 bits (61), Expect = 3.9
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 46 LDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPT 105
+ P +A + + K + +PT A P + P
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKA---AAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 106 PRSLPVS 112
P PV+
Sbjct: 177 PPPTPVA 183
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 27.1 bits (60), Expect = 4.2
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 84 KATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLEPN 143
K P +K +V + P P PV P P+ P S ++ A L P+
Sbjct: 96 KVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPS 155
Query: 144 MPEK 147
++
Sbjct: 156 QKDR 159
>gnl|CDD|203428 pfam06350, HSL_N, Hormone-sensitive lipase (HSL) N-terminus. This
family consists of several mammalian hormone-sensitive
lipase (HSL) proteins (EC:3.1.1.-). Hormone-sensitive
lipase, a key enzyme in fatty acid mobilisation, overall
energy homeostasis, and possibly steroidogenesis, is
acutely controlled through reversible phosphorylation by
catecholamines and insulin.
Length = 315
Score = 27.0 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 99 TVTKPPTPRSLPVSPAPSHCNVIPPPT 125
+T PP P LP++ P IPPPT
Sbjct: 266 LLTLPPEPLQLPLASDPELSVTIPPPT 292
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 26.9 bits (59), Expect = 4.8
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKP-PTPRSL 109
PP P P+ AP+ P + F + K T P + PTV P P+
Sbjct: 173 PPNP---PREAPA-PGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQ 228
Query: 110 PVSPAPSHCNVIPPPTPPPSQGQIPKG 136
P P P Q +G
Sbjct: 229 PQQQPVQPAQQPTPQNPAQQPPQTEQG 255
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 27.3 bits (60), Expect = 5.0
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 26 EVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKA 85
E+ ++ LED + V + ++D+SE V ++ S + QP SP L R +
Sbjct: 754 ELAQRMLEDPPEPVRPADPKVDTSENGVLEFSQGPPLSQVATIVDSQP--HMSPLLVRGS 811
Query: 86 TGTPNAARKPESPTVTKPPTPRSL--PVSPAPSHCNVIPPPT 125
T T RS+ P+SP P ++I T
Sbjct: 812 LDGTIRNVSGNLSWRTAAVTGRSVSGPLSPMPPELSIINVTT 853
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 26.8 bits (59), Expect = 6.3
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 2/127 (1%)
Query: 2 PVPSKFVPVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSA 61
P + PVA+ A P + R ++ P +P
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR--SPAPE 431
Query: 62 PSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVI 121
+ + Q + P A AAR + + P AP+
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
Query: 122 PPPTPPP 128
PPP
Sbjct: 492 ADDDPPP 498
>gnl|CDD|180315 PRK05933, PRK05933, type III secretion system protein; Validated.
Length = 372
Score = 26.7 bits (59), Expect = 6.4
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 84 KATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVI 121
K T PN +PE P P +P P ++
Sbjct: 279 KITSYPNL--QPEDPP---EEPSEGGPAAPLPGATKLV 311
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 26.4 bits (58), Expect = 6.4
Identities = 20/119 (16%), Positives = 36/119 (30%)
Query: 16 PGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVN 75
+ S +T S + ++ +S P + P S PSS A+ +
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 76 FKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIP 134
F + + + SP+ P SL S A + + P+
Sbjct: 62 FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSD 120
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 26.7 bits (59), Expect = 6.5
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 7/142 (4%)
Query: 4 PSKFVPVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPS 63
V A + A + ++ + ++ D+++ PV +A +
Sbjct: 398 AVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARA 457
Query: 64 SPSAQ---RKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP----S 116
S ++ R QP + P+AA +P + S
Sbjct: 458 SADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517
Query: 117 HCNVIPPPTPPPSQGQIPKGAS 138
+ PP + + P A+
Sbjct: 518 REDAPAAAAPPAPEARPPTPAA 539
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 26.6 bits (58), Expect = 7.4
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 20 SPATTPEVQRKSLEDSVKEVTEQNKRLDSS----EPPVPVWTPKSAPSSPSAQRKFQPVN 75
S + E++R L +VK + E L ++ + V T A RK QPV+
Sbjct: 235 SRSQAWELERGELLQTVKHLQEDRAALQATVELLQVRVQSLTHILALQEEELTRKAQPVD 294
Query: 76 FKSPTLPRKA 85
P RK
Sbjct: 295 ILEPEFARKC 304
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 26.3 bits (58), Expect = 7.5
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 44 KRLDSSE-PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTK 102
KR+D +E P + W +AP PS + + + A TP A K +
Sbjct: 221 KRIDGTEVPLLAPWQGDAAPVPPSEAARPKS----ADAETNAALKTPATAPKAAAKNAKA 276
Query: 103 PP-TPRSLPVSPAPSHCNVIPPPTPP--PSQGQIPKGAS 138
P P S + P+ P+ P+
Sbjct: 277 PEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLG 315
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 26.4 bits (58), Expect = 7.8
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 62 PSSPSAQRKFQPVNFKSPTLPRKATGTPNA-ARKPESPTVTKPPTPRSLPVSPAPSHCNV 120
P + P PT P P AR+P P P P S AP
Sbjct: 101 IPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVH---SAAPQPAVQ 157
Query: 121 IPPPTPPPSQGQ 132
P P Q Q
Sbjct: 158 TVQPAVPEQQVQ 169
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 26.1 bits (57), Expect = 9.1
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 57 TPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPS 116
T + ++PS+ + P + T PNA +P TK P+ P + PS
Sbjct: 25 TQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNAT----TPPSTKVEAPQQTPNATTPS 80
Query: 117 HCNVIPPPTPPPSQGQ 132
V P +P Q
Sbjct: 81 STKVETPQSPTTKQVP 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.125 0.376
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,020,686
Number of extensions: 691998
Number of successful extensions: 1893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 412
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.1 bits)