RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15848
(158 letters)
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 0.047
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP 110
P P ++P S SP++ SPT P + +P+ + P SP+ + P +P P
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYS-PTSPSYSP 1621
Query: 111 VSPAPSHCNVIPPPTPPPSQGQIPK 135
SP+ S + PT P P
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPS 1646
Score = 30.8 bits (69), Expect = 0.18
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP 110
P P ++P S SP++ SPT P + +P + P SP+ + P +P P
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--PTSPSYS-PTSPSYSP 1677
Query: 111 VSPAPSHCNVIPPPTPP------PSQGQIPKGASYLEPNMPEKQQQKDQNDNN 157
SP+ S + PT P PS G S P KQ ++ N+N
Sbjct: 1678 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENE 1730
Score = 27.4 bits (60), Expect = 2.4
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
P P + S SP++ SPT P + +P+ + P SP +P
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYS--PTSP----SYSPT 1580
Query: 108 SLPVSPAPSHCNVIPPPTPPPSQGQIPKGASY 139
S SP + P P S P SY
Sbjct: 1581 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.061
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 41 EQN--KRLDSSEPPVPVWTPKSAPS 63
E+ K+L +S + ++ SAP+
Sbjct: 18 EKQALKKLQAS---LKLYADDSAPA 39
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.4 bits (71), Expect = 0.098
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
+E +P A S A + + + ++A P P + P+
Sbjct: 349 DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQ 408
Query: 108 SLPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLEP 142
P P P PPP QG P+GA P
Sbjct: 409 GYPPQGYP------PQGYPPPPQGAPPQGAPPAAP 437
Score = 27.6 bits (61), Expect = 2.2
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 3/85 (3%)
Query: 52 PVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPV 111
+ + + + + + +K + PP + P
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 112 SPAPSHCNVIPPPTPPPSQGQIPKG 136
P PP P QG P+G
Sbjct: 398 QGYPPQG---YPPQGYPPQGYPPQG 419
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.5 bits (71), Expect = 0.12
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 13/99 (13%)
Query: 60 SAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCN 119
+AP+SP +P + P P + PT P
Sbjct: 3 AAPTSPG-----------TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP 51
Query: 120 VIPPPTPPPSQGQIPKGASYLEPNMPEKQQQKDQNDNNI 158
PP P + G + L ++ + + + + +
Sbjct: 52 T--PPRPAGDNATVAAGHATLREHLRDIKAENTDANFYV 88
Score = 30.3 bits (68), Expect = 0.29
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 47 DSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTP 106
D + P P TP A ++ +A +P P + ++ P P
Sbjct: 1 DPAAPTSPG-TPGVAAATQAA-----NGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP 54
Query: 107 RSLPVSPAPSHCNVIPPPTPPPSQGQIPK 135
R + + + + +
Sbjct: 55 RPAGDNATVAAGHATLREHLRDIKAENTD 83
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 0.15
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 21 PATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRK---FQPVNFK 77
+ + S + + L + PPV V P P A +
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 78 SPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIP 134
+ R TG + P P P + +P + V P +
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGR-QPGPEAPASAPPAAGRAVPGLYHHPVPEPDPV 126
Score = 30.1 bits (67), Expect = 0.26
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 47 DSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTP 106
+ S PSA +F + P P A P +P PP
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGNPPDT 64
Query: 107 RSLPVSPAPSHCNVIPPPTPPPSQ 130
+ ++ PT P +
Sbjct: 65 VTGDSVLQR----ILRGPTGPGTT 84
Score = 26.6 bits (58), Expect = 3.8
Identities = 10/70 (14%), Positives = 16/70 (22%)
Query: 63 SSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIP 122
SS + + + + +AA + P P P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 123 PPTPPPSQGQ 132
S Q
Sbjct: 63 DTVTGDSVLQ 72
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor
protein, phosphorylation, cell; HET: TPO; 2.70A {Homo
sapiens}
Length = 656
Score = 28.9 bits (64), Expect = 0.68
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 95 PESPTVTKPPTPRSLPVSPAPSHCNVIPPPTP 126
++ ++ T R+ S NVIPP TP
Sbjct: 271 LQTDSIDSFETQRTPRKSNLDEEVNVIPPHTP 302
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 85 ATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQG 131
T P+ E P + P P +PAP+ P P+
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAA 136
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.4 bits (62), Expect = 1.2
Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 8/138 (5%)
Query: 20 SPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSP 79
+ E+ E S E +QN+ + E + + S ++ S
Sbjct: 29 NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP--------ASN 80
Query: 80 TLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGASY 139
T +A KPE S P P P +
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
Query: 140 LEPNMPEKQQQKDQNDNN 157
+ K+
Sbjct: 141 KTEKEVQPDVPKNTEKTL 158
Score = 26.1 bits (56), Expect = 7.0
Identities = 19/141 (13%), Positives = 37/141 (26%)
Query: 11 AKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRK 70
T SPA+ ++ E + E+ +E P PKS + +
Sbjct: 67 GVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEA 126
Query: 71 FQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQ 130
+ P T P++ T P ++
Sbjct: 127 TNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINR 186
Query: 131 GQIPKGASYLEPNMPEKQQQK 151
G + + + EK ++
Sbjct: 187 GSVVLASRRTGHLVNEKASKE 207
Score = 25.7 bits (55), Expect = 9.2
Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 3/146 (2%)
Query: 9 PVAKTIKPGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQ 68
A T S +T E +++ + +E + ++ +P S ++ +
Sbjct: 30 SGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA--SPASNEAATTET 87
Query: 69 RKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKP-PTPRSLPVSPAPSHCNVIPPPTPP 127
+ TP+A KP+S T+ P + P+
Sbjct: 88 AEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQ 147
Query: 128 PSQGQIPKGASYLEPNMPEKQQQKDQ 153
P + + + ++ +
Sbjct: 148 PDVPKNTEKTLKPKEIKFNSWEELLK 173
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.3 bits (62), Expect = 1.2
Identities = 9/94 (9%), Positives = 22/94 (23%)
Query: 61 APSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNV 120
A P +++ +P + ++ +P + +
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Query: 121 IPPPTPPPSQGQIPKGASYLEPNMPEKQQQKDQN 154
P P + Q P ++Q
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 27.9 bits (60), Expect = 1.4
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 40 TEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPT 99
T + S+ PV + P+ ++ +P+ P KP +PT
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG-KIRAVNVPKVTKEKPTPPVKPTAPT 461
Query: 100 VTKPPTPRSLPVSPAPSHCNVIPPPTPP 127
KP P+ PAP N PTPP
Sbjct: 462 --KPTYETEKPLKPAPVAPNYEKEPTPP 487
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.1 bits (62), Expect = 1.6
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 48 SSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPR 107
S P P ++P S SP++ SPT P + +P+ + P SP+ + P +P
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYS-PTSPS 1696
Query: 108 SLPVSPAPSHCNVIPPPTPPPSQGQIPK 135
P SP+ S + PT P P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1724
Score = 28.1 bits (62), Expect = 1.7
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 47 DSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTP 106
S P P ++P S SP++ SPT P + +P+ + P SP+ + P +P
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYS-PTSP 1709
Query: 107 RSLPVSPAPSHCNVIPPPTPPPSQGQIPKGASY 139
P SP+ S P P S P SY
Sbjct: 1710 SYSPTSPSYS---PTSPSYSPTSPSYSPTSPSY 1739
Score = 27.3 bits (60), Expect = 2.6
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 51 PPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLP 110
P P ++P S SP++ SPT P + +P + P SP+ P +P P
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPS-YSPTSPSYSP 1748
Query: 111 VSPA 114
SP+
Sbjct: 1749 TSPS 1752
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 27.7 bits (61), Expect = 1.7
Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 2/103 (1%)
Query: 29 RKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSP--TLPRKAT 86
RK + + + + S + P P + V+ + P T +
Sbjct: 10 RKKVMGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGV 69
Query: 87 GTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPS 129
G P+ R +P P +P P
Sbjct: 70 GMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGD 112
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 27.6 bits (62), Expect = 1.7
Identities = 13/59 (22%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 79 PTLPRKATGTPNAARKPESPTVTK--PPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPK 135
P LP P P V P P P P P P ++P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA---DRLPN 57
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 27.5 bits (60), Expect = 2.0
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 84 KATGTPNAARKPESPTVTKPPTPRSLPVSP-APSHCNVIPPPTPPP 128
A G P P +PT T + L +P APS+ N PP P
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 27.1 bits (60), Expect = 2.5
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 8/89 (8%)
Query: 59 KSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAP--- 115
KS P S +R+ A KP S + P+ P + P
Sbjct: 4 KSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLF 63
Query: 116 -----SHCNVIPPPTPPPSQGQIPKGASY 139
S P P + G A Y
Sbjct: 64 GGFNSSDTVTSPQRAGPLAGGVTTFVALY 92
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 3.7
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 2/59 (3%)
Query: 83 RKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIPKGASYLE 141
RKA A + + + P + + P P + + LE
Sbjct: 755 RKAVSIETALEHKVVNGNSADAAYAQVEIQPRANI--QLDFPELKPYKQVKQIAPAELE 811
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 58 PKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSH 117
P S + + +P+N P P P + PP +P + +
Sbjct: 3 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 62
Query: 118 C-------NVIPPPTPPPSQGQIPKGASY 139
N +P + + ++P G
Sbjct: 63 PDYIRSTLNAVPKNSSLLKKSKLPFGLVI 91
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.8 bits (59), Expect = 4.0
Identities = 8/50 (16%), Positives = 11/50 (22%)
Query: 85 ATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPSQGQIP 134
P +P AP+ P P P + P
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAP 139
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 26.3 bits (57), Expect = 5.2
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 29 RKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSSPSAQRKFQPV 74
+ E +E+ + N + + V P S P SP R V
Sbjct: 640 DQFRELVGEELNDSNMDALAGGKKLKVARPLSVPGSPRDLRSNSTV 685
Score = 26.3 bits (57), Expect = 5.9
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Query: 67 AQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPPTPRSLPVSPAPSHCNVIPPPTP 126
A R+ P F+ +A + V P S+P SP N TP
Sbjct: 633 ALRRGYPDQFRELVGEELNDSNMDALAGGKKLKV---ARPLSVPGSPRDLRSNSTVYMTP 689
Query: 127 PP--SQGQIPKGASYLEPNMPEKQQQKDQ 153
+ ++ Y + D
Sbjct: 690 GDLGTLQEVNNADDYFSLGVNPAADDDDD 718
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 25.5 bits (56), Expect = 8.5
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 89 PNAARKPESPTVTKPPTPRSLPVSPAPSHCN-----VIPPPTPPPS 129
+ + TVT P+ S A IP PT P S
Sbjct: 364 SSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTS 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.125 0.376
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,295,200
Number of extensions: 121008
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 133
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.7 bits)