RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15848
         (158 letters)



>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 274

 Score = 30.1 bits (68), Expect = 0.084
 Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 18/97 (18%)

Query: 6   KFVPVAKTIKPGTWSPAT-TPEVQRKSLEDSVKEVTEQNKRLDSSEPPVPVWTPKSAPSS 64
               V +TI     +    +P  + + L +      +   ++    PP            
Sbjct: 169 TTAAVKQTI--SRSAVKCLSPAKRGRLLTEKTAFALQNKDKVKPLTPPDRPVL------- 219

Query: 65  PSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVT 101
                    + F +      A   P    K  + TV 
Sbjct: 220 --------SIEFANYGQAEWANLMPGTEIKTGTTTVQ 248


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
          {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score = 26.8 bits (59), Expect = 1.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 33 EDSVKEVTEQNKRLDSSE 50
          +D +K +TE +   D+S 
Sbjct: 1  KDVIKVLTESSDFRDNSL 18


>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
          Length = 253

 Score = 26.2 bits (57), Expect = 2.0
 Identities = 7/38 (18%), Positives = 11/38 (28%)

Query: 16  PGTWSPATTPEVQRKSLEDSVKEVTEQNKRLDSSEPPV 53
           P +W  A           +  K V +        + PV
Sbjct: 204 PDSWKDAPAETKAEPMTNEFFKNVVKPILTQQGDKLPV 241


>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 144

 Score = 25.3 bits (55), Expect = 2.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 43  NKRLDSSEPPVPVWTPKSAPSS 64
             + D +    P W  KS PSS
Sbjct: 122 VTKNDGNYRGDPNWFMKSGPSS 143


>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 25.8 bits (56), Expect = 3.2
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 95  PESPTVTKPPTPRSLPVSPAPSHCNVIPPPTPPPS 129
             +P+     T  +  ++ A      IP PT P S
Sbjct: 376 TAAPSGYSATTMAA-DLATAFGLTASIPIPTIPTS 409


>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 24.2 bits (52), Expect = 5.8
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 45  RLDSSEPPVPVWTPKSAPSSPSAQRKFQPVNFKSPTLPRKATGTPNAARKPESPTVTKPP 104
            +DSS P V V+   +A  +P +  +      +S +     +        P +P V + P
Sbjct: 20  LVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSES--ETESEASEITIPPSTPAVPQAP 77

Query: 105 TP 106
             
Sbjct: 78  VQ 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.125    0.376 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,510
Number of extensions: 26273
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 18
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (23.0 bits)