BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15850
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 62.4 bits (150), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 34/40 (85%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+ +KGDI+++ ++VDKNW EGEH+ +G+FP NYVE++
Sbjct: 23 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 62
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 61.6 bits (148), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
EL+ +KGDI+++ ++VDKNW EGEH+ +G+FP NYVE++P +
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 33/40 (82%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL +KGDI+++ +Q+D+NWYEGEH+ +G+FP Y+E++
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
N +L F KGD+I +RRQ+D+NWY+GE N + G+FP + VE+I
Sbjct: 20 NPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+N EL FK+GDII + Q+D+NWYEG + G FP NYVEI+
Sbjct: 19 ENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEIL 62
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+N EL FK+GDII + Q+D+NWYEG + G FP NYVEI+
Sbjct: 23 ENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEIL 66
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+N EL FK+GDII + Q+D+NWYEG + G FP NYVE+I
Sbjct: 15 ENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
ELSF++G II+V ++ D WYEG N + GLFP NYVE I
Sbjct: 33 ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 30 NEIKELIS---EEELARRQAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGD 86
N + EL+ ++R Q +R I Q ++ Y+Q L D + EL F++GD
Sbjct: 126 NSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDG----ELGFRRGD 181
Query: 87 IIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
I V D NW++G + G+FP NYV
Sbjct: 182 FIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
ELSFK+GDI+ V + D+NWY+ E N G P NY+E+ P+ + A+A
Sbjct: 16 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPR-----AKA 70
Query: 138 KFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVR-------------------NEIKE 178
+ Q H L++ES D +++++ V+ N + E
Sbjct: 71 EEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNE 130
Query: 179 LIS---EEELARRQAEAMRRIYQEERRRKYLQELHDI 212
L+ ++R Q +R I Q ++ Y+Q L D
Sbjct: 131 LVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 167
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+N EL F++GD+I + Q+D+NWYEG + G FP +YV+++
Sbjct: 25 ENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVL 68
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 57 RRRKYLQELHDISSRRHT-DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
R Y Q I+ + +N ELSF KG +I V + D +W++GE N + GLFP NYV
Sbjct: 11 RENLYFQGCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70
Query: 116 EI 117
++
Sbjct: 71 KM 72
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
+N ELSF KG +I V + D +W++GE N + GLFP NYV++
Sbjct: 45 ANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
N ELSF KGD+I V R + W+EG HN G FP NYV I
Sbjct: 17 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+
Sbjct: 190 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 229
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
N ELSF KGD+I V R + W+EG HN G FP NYV I
Sbjct: 19 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
N EL+F KG II V + D +W++GE + +GLFP NYV++
Sbjct: 15 NDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV-EIIP 119
N ELSF KGD+I V R + W+EG HN G FP NYV EI P
Sbjct: 19 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
K++Q L D + + EL+FK+GD+I + + D NW+EG+ N G+FP NYV P
Sbjct: 3 KFVQALFDFNPQESG----ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV--CP 56
Query: 120 YD 121
Y+
Sbjct: 57 YN 58
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+FK G+II V D NW++GE++ IGLFP N+V
Sbjct: 33 ELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 47.8 bits (112), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
K++Q L D + + EL+FK+GD+I + + D NW+EG+ N G+FP NYV P
Sbjct: 3 KFVQALFDFNPQESG----ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV--CP 56
Query: 120 YD 121
Y+
Sbjct: 57 YN 58
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+
Sbjct: 34 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 73
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 47.0 bits (110), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
K++Q L D + + EL+FK+GD+I + + D NW+EG+ N G+FP NYV P
Sbjct: 5 KFVQALFDFNPQESG----ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVA--P 58
Query: 120 YD 121
Y+
Sbjct: 59 YN 60
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+
Sbjct: 20 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 73 HTDNFTELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEII 118
+ D E+SF+KG+ I + RQVD+NWYEG + G+FP YV++I
Sbjct: 17 NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
ELSF++GD++ + + +W+ GEHN M GL P Y+ +
Sbjct: 26 ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 73 HTDNFTELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEII 118
+ D E+SF+KG+ I + RQVD+NWYEG + G+FP YV++I
Sbjct: 16 NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
ELS KGDII+V R + W+EG N G FP NYV
Sbjct: 26 ELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+FK G+II V D NW++GE + IGLFP N+V
Sbjct: 33 ELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPY 120
ELSFK+GDI+ V + D+NWY+ E N G P NY+E+ P+
Sbjct: 25 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 67
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
Y+Q L D + EL F++GD I V D NW++G + G+FP NYV +
Sbjct: 4 YVQALFDFDPQEDG----ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
Y+Q L D + EL F++GD I V D NW++G + G+FP NYV
Sbjct: 4 YVQALFDFDPQEDG----ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
Y+Q L D + EL F++GD I V D NW++G + G+FP NYV
Sbjct: 4 YVQALFDFDPQEDG----ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 43.5 bits (101), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
N ELSF KGD+I V R + W+EG N G FP NYV
Sbjct: 21 NEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPK 128
EL+ +KGDI+ + + ++ W+ G N G FP YVE +P + TA K
Sbjct: 23 ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATK 72
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F++GD I V D NW++G + G+FP NYV
Sbjct: 16 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
ELSFKKG + + ++ +W+EG HN + GL P Y+ +
Sbjct: 25 ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 76 NFTELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEIIP 119
N EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++P
Sbjct: 15 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 76 NFTELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEIIP 119
N EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++P
Sbjct: 16 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F++GDII++ D NW++G GL P NYV
Sbjct: 19 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F++GDII++ D NW++G GL P NYV
Sbjct: 23 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
N EL K GDII V +V++ W+EG N G+FP N++
Sbjct: 31 NDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 70
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+FK G++I V D NW++GE++ GLFP N+V
Sbjct: 21 ELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 76 NFTELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
N EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++P D
Sbjct: 22 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD 69
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEI 117
ELSF+KG+ I + R+V++NWYEG G+FP +YV++
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 73
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
ELSFKKG + + + ++W+EG HN + GL P Y+ +
Sbjct: 22 ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK+GD I V ++ W+EGE N G P NYV+ I
Sbjct: 20 ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK+GD I V ++ W+EGE N G P NYV+ I
Sbjct: 19 ELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVD--KNWYEGEHNAMIGLFPFNYVEII 118
+L F+KGD+I + ++ D +W+ G N G+FP NYVE++
Sbjct: 19 DLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 57 RRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
RR K L + RH D+ EL F+K DII + Q D++ + GE N + G FP +VE
Sbjct: 8 RRAKALLDFE-----RHDDD--ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Query: 117 II 118
++
Sbjct: 61 VL 62
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVD--KNWYEGEHNAMIGLFPFNYVEI 117
+L+FKKGD+I + ++ D +W+ G N G+FP NYV +
Sbjct: 19 DLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEI 117
ELSFK+GDI+ V + D+NWY+ E N G P NY+E+
Sbjct: 16 ELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL ++GDII++ D NW++G GL P NYV
Sbjct: 30 ELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
N EL K GDII V +V++ W+EG N G+FP N+++
Sbjct: 20 NDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
N EL K GDII + +V++ W+ G N +GLFP N+V+
Sbjct: 20 NEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
N EL K GDII + +V++ W+ G N +GLFP N+V+
Sbjct: 14 NEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 78 TELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+ELS K+GDII + ++ + W+ GE IG FP NYVE
Sbjct: 20 SELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+L F++GDII V +V++ W EGE +G+FP +VE
Sbjct: 21 DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 76 NFTELSFKKGDIIFVRRQV--DKNWYEGEHNAMIGLFPFNYVE 116
+ ELS ++GD++ + ++ D+ W++GE N IG FP YVE
Sbjct: 20 DMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 76 NFTELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEII 118
N EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++
Sbjct: 20 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 65 LHDISSRRHTDNFTELSFKKGD-IIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEII 118
L+D + H ELSFK GD + + + ++ W +G N +GL+P NYVE I
Sbjct: 434 LYDYEGQEHD----ELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
ELS KG + V + W+ G +N +G FP NYV
Sbjct: 33 ELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQV--DKNWYEGEHNAMIGLFPFNYVEIIPYDK 122
L+ +R H E+SF GDII V + + W G G FP NYVE +P +
Sbjct: 11 LYPFEARNHD----EMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66
Query: 123 IRTA--PKK 129
A PKK
Sbjct: 67 NEKAVSPKK 75
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 65 LHDISSRRHTDNF---TELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVE 116
L+D R + N EL+F GDII V ++D++ +Y GE N GL P N++E
Sbjct: 13 LYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
E+SF DII +D W+ G GLFP NYVE+
Sbjct: 33 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 71
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 80 LSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
L+F K DII V Q +NW+ GE + G FP +YV+IIP
Sbjct: 27 LNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIP 65
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
N EL GD+I V +V++ W+ G N +GLFP N+V+
Sbjct: 17 NEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 254 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF 294
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNY 114
E +Y++ L+D D L FKKG+I+ + + ++ W+ + + +G+ P Y
Sbjct: 122 EDNLEYVRTLYDFPGNDAED----LPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 115 VEIIPYDKIRTAP 127
VE + +R++P
Sbjct: 178 VEKL----VRSSP 186
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 254 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF 294
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNY 114
E +Y++ L+D D L FKKG+I+ + + ++ W+ + + +G+ P Y
Sbjct: 122 EDNLEYVRTLYDFPGNDAED----LPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 115 VEIIPYDKIRTAP 127
VE + +R++P
Sbjct: 178 VEKL----VRSSP 186
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
ELS KG + V + W+ G +N +G FP NYV
Sbjct: 20 ELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
E+SF DII +D W+ G GLFP NYVE+
Sbjct: 25 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 63
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
E+SF DII +D W+ G GLFP NYVE+
Sbjct: 26 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 79 ELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
ELSF+KG I+ + + D NWY E + GL P NY+E+ +D
Sbjct: 16 ELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 79 ELSFKKGDIIFVRR-QVDKNWYEGEHN-AMIGLFPFNYVEIIPYDK 122
EL+ +G+II V V W EG++N GL P +YVEI+P D
Sbjct: 26 ELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG 71
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
ELS KG + V + W+ G +N IG FP NYV
Sbjct: 16 ELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+Y++ L+ ++ D L K GD + + ++ WY+G N G+FP NYV+
Sbjct: 3 EYVEALYQFDPQQDGD----LGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 63 QELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
+E I+ TD T+LSF +G+ I + RQ +W+ GE G P N+V
Sbjct: 8 EEFVAIADYAATDE-TQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 33 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 37.0 bits (84), Expect = 0.009, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 68 ISSRRHTDNFTELSFKKGDII-FVRRQVDKNWY--EGEHNAMIGLFPFNYVEII 118
I S DN T LSFK+GD+I + + W+ E E M G FPF+Y ++
Sbjct: 13 IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 66 HDISSRRHTDNFTELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
HD S+ ELSF+K I+ + + D NWY E + GL P NY+E+ +D
Sbjct: 7 HDFSATADD----ELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEII 118
E+SF+ GD I +Q+D W G E G+ P NYVE I
Sbjct: 19 EVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+ G+II R+ D W+EG+ N GLFP N+V
Sbjct: 17 ELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 36.2 bits (82), Expect = 0.014, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL F+ GD I + ++ W EG G+FP+ +V++ P
Sbjct: 29 ELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP 69
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 35.8 bits (81), Expect = 0.019, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEII 118
E+SFK GD I + +D+ W G + G+ P NYVE I
Sbjct: 19 EVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 35.8 bits (81), Expect = 0.021, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 18 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F+ G+++ V + +W+ G + +GLFP NYV
Sbjct: 18 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 35.4 bits (80), Expect = 0.023, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFV---RRQVDKNWYEGEHNAMIGLFPFNYVE 116
+++ L+D + TD+ ELSF +G II + Q D ++EGE N IG+FP VE
Sbjct: 10 FVKALYDYEGQ--TDD--ELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 64
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVDK--NWYEGEHNAMIGLFPFNYVEI 117
+L+F+ GD I V + D +W+EG+ G+FP NYV +
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+FK GD+I V +K+W+ G+ + G FP ++V
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F+ G+++ V + +W+ G + +GLFP NYV
Sbjct: 21 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVE 116
Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 3 YVRALFDFNGNDDED----LPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVE 55
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + G+++ V + +EGE N G FPF +V ++
Sbjct: 121 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 161
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 35.0 bits (79), Expect = 0.034, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
ELSF DII + ++ W+ G GLFP NYV I
Sbjct: 21 ELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
+Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 15 EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 68
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 39 EELARRQAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNW 98
E ++R + + + QEE +Y++ L D + D L FKKGDI+ +R + ++ W
Sbjct: 116 EPVSRSRQGSGVILRQEEA--EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQW 169
Query: 99 YEGEHN-AMIGLFPFNYVE 116
+ E + G+ P YVE
Sbjct: 170 WNAEDSEGKRGMIPVPYVE 188
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 78 TELSFKKGDIIFVRR-QVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + G+++ V + V W EGE N G FPF +V ++
Sbjct: 254 TALALEVGELVKVTKINVSGQW-EGECNGKRGHFPFTHVRLL 294
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.041, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+L + GDII + +++W++G+ IG FP N+V+
Sbjct: 23 DLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 34.7 bits (78), Expect = 0.041, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
ELS G + V W+ G +N IG FP NYV
Sbjct: 17 ELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 34.7 bits (78), Expect = 0.043, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL F+ G+++ V + +W+ G + +GLFP NYV
Sbjct: 17 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 34.7 bits (78), Expect = 0.046, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 58 RRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
R ++ + L+D + EL F+ G+++ V + +W+ G + +GLFP NYV
Sbjct: 2 RVRWARALYDFEALEED----ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
+Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 137 EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 34.3 bits (77), Expect = 0.055, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 63 QELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEII 118
+ L+ S RH L F G++I + + D W+EGE + + G FP +YV+++
Sbjct: 7 RTLYPFSGERHGQG---LRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 34.3 bits (77), Expect = 0.059, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 71 RRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
R DN L+F K D+I V Q D W+ GE G FP +YV++I
Sbjct: 22 RAKKDN--HLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVKLI 66
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 3 YVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
T + EL FK GD+I V ++ W+ G G FP ++V +
Sbjct: 78 TXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRL 121
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
+Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 135 EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 5 YVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
EL FK GD+I V ++ W+ G G FP ++V +
Sbjct: 46 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRL 84
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 33.5 bits (75), Expect = 0.091, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 76 NFTELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNY 114
N EL+F++G+II + + + W++GE N G+FP N+
Sbjct: 19 NEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL G+I+FV ++ + NW N GL P NY+E
Sbjct: 23 ELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLE 60
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMI---GLFPFNYVEII 118
DN EL+F +G++I V + D+ W+ G G+FP ++V I+
Sbjct: 21 ADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL 68
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 79 ELSFKKGDIIFVRRQVD-----KNWYEG-EHNAMIGLFPFNYVEII 118
E++ KKGD++ + + D +W++ N IG P+NY+EII
Sbjct: 31 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 74 TDNFTELSFKKGDII--FVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
TDN + LSF +GD+I ++ W G GLFP + V+
Sbjct: 19 TDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 33 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 78 TELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+ELSF G + V + W EG N GL P NYVE +
Sbjct: 25 SELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 79 ELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+ + G+II V++ ++ W EGE N G+FP N+V
Sbjct: 17 ELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>pdb|2W2D|A Chain A, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|C Chain C, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 450
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 297 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 355
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 356 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 393
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 97
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEII 118
EL FK+G II V D + +Y GE A +GL P N V I
Sbjct: 41 ELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEI 81
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 79 ELSFKKGDIIFVRRQVD-----KNWYEG-EHNAMIGLFPFNYVEII 118
E++ KKGD++ + + D +W++ N IG P+NY+EII
Sbjct: 31 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
>pdb|1XTF|A Chain A, Neurotoxin BontA E224Q Y366F MUTANT
pdb|1XTF|B Chain B, Neurotoxin BontA E224Q Y366F MUTANT
Length = 427
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 292 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 350
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 351 DNFVKFFKVLN----RKTFLNFDKAVFK----INIVPKVNYTIYDG 388
>pdb|3DDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Snap-25 Peptide
pdb|3DDB|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Substrate Analog Peptide
pdb|3QW5|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrgf
pdb|3QW6|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rygc
pdb|3QW7|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrfc
pdb|3QW8|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Crgc
Length = 430
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYDK 122
L+D SR TD LSFKKG+ + + + +W+ G P NYV P D
Sbjct: 91 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV--APSDS 144
Query: 123 IR 124
I+
Sbjct: 145 IQ 146
>pdb|4HEV|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
pdb|4HEV|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
Length = 441
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 309 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 367
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 368 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 405
>pdb|3QIX|A Chain A, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIX|B Chain B, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIY|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-1
pdb|3QIZ|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-2
pdb|3QJ0|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-3
Length = 430
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|4EJ5|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA WILD-Type
Length = 445
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 313 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 371
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 372 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 409
>pdb|3DS9|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
pdb|3DSE|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
Length = 417
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|2ISE|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISE|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISG|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISG|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISH|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
pdb|2ISH|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
Length = 421
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 292 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 350
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 351 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 388
>pdb|3BOK|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A Apo-
Enzyme
pdb|3BON|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
Zn2+ Cofactor Bound
pdb|3BOO|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
An Inhibitory Peptide Bound
Length = 425
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|3BWI|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With An Acetate Ion Bound At The
Active Site
pdb|3C88|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgc
pdb|3C89|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgm
pdb|3C8A|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgl
pdb|3C8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgi
Length = 432
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|2ILP|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2ILP|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2IMA|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMA|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMB|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMB|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMC|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
pdb|2IMC|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
Length = 444
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 313 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 371
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 372 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 409
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 16 SEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 313 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 371
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 372 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 409
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYDK 122
L+D SR TD LSFKKG+ + + + +W+ G P NYV P D
Sbjct: 8 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA--PSDS 61
Query: 123 IR 124
I+
Sbjct: 62 IQ 63
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYDK 122
L+D SR TD LSFKKG+ + + + +W+ G P NYV P D
Sbjct: 8 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA--PSDS 61
Query: 123 IR 124
I+
Sbjct: 62 IQ 63
>pdb|4EL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134SC165S DOUBLE MUTANT
Length = 445
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 313 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 371
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 372 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 409
>pdb|1XTG|A Chain A, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 424
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 292 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 350
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 351 DNFVKFFKVLN----RKTFLNFDKAVFK----INIVPKVNYTIYDG 388
>pdb|3NF3|A Chain A, Crystal Structure Of BontA LC WITH JTH-Nb-7239 Peptide
Length = 425
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 293 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 351
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 352 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 389
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYDK 122
L+D SR TD LSFKKG+ + + + +W+ G P NYV P D
Sbjct: 8 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA--PSDS 61
Query: 123 IR 124
I+
Sbjct: 62 IQ 63
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|3K3Q|C Chain C, Crystal Structure Of A Llama Antibody Complexed With The
C. Botulinum Neurotoxin Serotype A Catalytic Domain
Length = 175
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 43 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 101
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 102 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 139
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 80 LSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEIIPYD 121
L FK+ DII + + +N W+ G+ N G FP ++VEI+ D
Sbjct: 27 LPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 44
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIPYDK 122
L+D SR TD LSFKKG+ + + + +W+ G P NYV P D
Sbjct: 9 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA--PSDS 62
Query: 123 IRT 125
I+
Sbjct: 63 IQA 65
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 79 ELSFKKGDIIFVRRQVD-----KNWYE-GEHNAMIGLFPFNYVEII 118
E++ KKGD++ + + D +W++ N IG P+NY+EII
Sbjct: 24 EVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 294 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 352
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 353 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 390
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 32.0 bits (71), Expect = 0.28, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
+Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 4 EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 3 YVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEI 117
EL+F + D I VD +W+ G E + GLFP NYV +
Sbjct: 16 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 296 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 354
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L+ R+ NF + FK I + +V+ Y+G
Sbjct: 355 DNFVKFFKVLN----RKTYLNFDKAVFK----INIVPKVNYTIYDG 392
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEI 117
EL+F + D I VD +W+ G E + GLFP NYV +
Sbjct: 17 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEI 117
EL+F + D I VD +W+ G E + GLFP NYV +
Sbjct: 20 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVK 54
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL FK GD+I V ++ W+ G G FP ++V
Sbjct: 52 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 79 ELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYV 115
EL+ + G+II V++ ++ W EGE N G+FP N+V
Sbjct: 16 ELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVE 116
N EL + GDI+ V + D W+ G G FP NYV+
Sbjct: 19 NDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 64 ELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNA-----MIGLFPFNYVEII 118
E+ ++S +LS G +I + ++ W++GE A G FP ++V+++
Sbjct: 8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67
Query: 119 -PYDKIRTAP 127
P + + P
Sbjct: 68 GPSSERASGP 77
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVE 116
N EL + GDI+ V + D W+ G G FP NYV+
Sbjct: 19 NDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVK 59
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P +YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVK 59
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL+ KKGDI+ + +K+W++ E N G P Y++
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAM--IGLFPFNYVEI 117
T+L F++G+ + + + +++W+E NA+ GL P NYV+I
Sbjct: 162 TDLPFEQGERLEILSKTNQDWWEA-RNALGTTGLVPANYVQI 202
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115
T+L KKG + V +++ Y+ E + IG P Y+
Sbjct: 264 TQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEII 118
E+SF+ GD I + +D W G + G+ P NY+E +
Sbjct: 22 EVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 31.6 bits (70), Expect = 0.37, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 79 ELSFKKGDIIFVRRQVD-KNWYEGEHNAMIGLFPFNY 114
E+S GDII V R D W GE + + GLFP +Y
Sbjct: 16 EISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 73 HTDNFTELSFKKGDIIFVRRQVDKNWYEGE---HNAMIGLFPFNYVEII 118
DN EL+F +G++I V + D+ W+ G G+FP ++V I+
Sbjct: 11 QADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL 59
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 2 YVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 31.2 bits (69), Expect = 0.43, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVE 116
+Y++ L D + D L FKKGDI+ +R + ++ W+ E + G+ P YVE
Sbjct: 2 EYVRALFDFNGNDEED----LPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 31.2 bits (69), Expect = 0.44, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 31.2 bits (69), Expect = 0.48, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL+ KKGDI+ + +K+W++ E N G P Y++
Sbjct: 22 ELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLK 59
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 31.2 bits (69), Expect = 0.50, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYV 115
N EL ++GD + V +Q D W+ G G FP NYV
Sbjct: 20 NEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+L+F +G+ I V Q D W+ G G+FP NYV+
Sbjct: 24 DLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVK 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 30.8 bits (68), Expect = 0.56, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 30.8 bits (68), Expect = 0.56, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAM--IGLFPFNYVEI 117
T+L F++G+ + + + +++W+E NA+ GL P NYV+I
Sbjct: 133 TDLPFEQGERLEILSKTNQDWWEA-RNALGTTGLVPANYVQI 173
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 30.8 bits (68), Expect = 0.69, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ G P NYV
Sbjct: 13 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 30.8 bits (68), Expect = 0.69, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ G P NYV
Sbjct: 13 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 30.4 bits (67), Expect = 0.79, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL+ KKGDI+ + +K+W++ E N G P Y++
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVK 59
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ G P NYV
Sbjct: 8 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2RA5|A Chain A, Crystal Structure Of The Putative Transcriptional
Regulator From Streptomyces Coelicolor
Length = 247
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 12 PNSIVDSEVTLQYR----RP-VRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELH 66
P S++ +E+ L R RP VR I+ L+ + L RR+ + ++ + RR L L+
Sbjct: 36 PGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHSKVRRPLELSSLY 95
Query: 67 D 67
D
Sbjct: 96 D 96
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 99 YEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARAKFNFVAQ------------TH 146
YEG IGL ++ ++ K+ K + EG+ A FN ++ H
Sbjct: 67 YEGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGH 126
Query: 147 LELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYL 206
VKE Y D ++ R RNE + L + Q A+ ++Y E L
Sbjct: 127 TSFKKVKE-KRDYGDLHFSVLAIRSARNEFR------ALQKLQGLAVPKVYAWE-GNAVL 178
Query: 207 QELHD 211
EL D
Sbjct: 179 MELID 183
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 70 SRRHTDNFT-------ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+R HTD FT L KKGDII + + + G N +G F F YV+++
Sbjct: 12 ARVHTD-FTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E N G P Y++
Sbjct: 22 EVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGD-IIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEII 118
ELSFK GD + + + ++ W G + +GL+P NYVE I
Sbjct: 19 ELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMI--GLFPFNYVEIIPYDK 122
L+D +R D LSFKKG+ + + +W+E A G P NYV +P D
Sbjct: 33 LYDYEARTTED----LSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV--VPADS 86
Query: 123 IR 124
I+
Sbjct: 87 IQ 88
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
N EL GDI+ V + + W+ E N G P +Y+E
Sbjct: 21 NPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVK 59
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ G P NYV
Sbjct: 6 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGL-FPFNYVE 116
+ ++ L D ++R EL+F K II + D W+ G++ L FP NYVE
Sbjct: 6 KSAVKALFDYKAQRED----ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 60
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDK 122
+L+FKKG+I+ V ++ D W + GL P Y+E PY +
Sbjct: 26 DLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE--PYSE 68
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 76 NFTELSFKKGDIIFVRRQV--DKNWYEGEHNAMIGLFPFNYVEII 118
N TELS ++I V V D +W GE G P Y+E++
Sbjct: 30 NSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + G+++ V + +EGE N G FPF +V ++
Sbjct: 36 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii
Length = 76
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
T L+ + G+++ V + +EGE N G FPF +V ++
Sbjct: 26 TALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 66
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 5 IQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMR---------RIYQE 55
I +T N+ SIV + +LQY + V E K L+SE+ + + ++ IY E
Sbjct: 292 IASTLNKAKSIVGTTASLQYMKNVFKE-KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTE 350
Query: 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG 101
+ K+ + L +R+ NF + FK I + +V+ Y+G
Sbjct: 351 DNFVKFFKVL----NRKTYLNFDKAVFK----INIVPKVNYTIYDG 388
>pdb|3LBB|A Chain A, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159
pdb|3LBB|B Chain B, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159
pdb|3LBE|A Chain A, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|B Chain B, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|C Chain C, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
pdb|3LBE|D Chain D, The Crystal Structure Of Smu.793 From Streptococcus Mutans
Ua159 Bound To Acetyl Coa
Length = 163
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 48 AMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDK--NWYEGEHNA 105
+M Q R LH+I R +NF +SF+KG +I VDK N+Y H
Sbjct: 23 SMTGGQQMGRGSMSDNHLHEI---RVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGG 79
Query: 106 MI 107
I
Sbjct: 80 YI 81
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWY--EGEHNAMIGLFPFNYVEII 118
+N EL +GDI+F+ + + W E E + GL P +V I
Sbjct: 17 ENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 62
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGE 102
+EL KKGD+I++ R+ W G+
Sbjct: 16 SELPLKKGDVIYITREEPSGWSLGK 40
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E G P YV+
Sbjct: 22 EVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVK 59
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGL-FPFNYVE 116
EL+F K II + D W+ G++ L FP NYVE
Sbjct: 19 ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 59 RKYLQELHDISSRRHT-DNFTELSFKKGDIIFVRRQV-DKNWYEGEHN 104
R++ I+ HT EL+F+KGD++ + +K+WY +H+
Sbjct: 12 RRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHH 59
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E++ KKGDI+ + +K+W++ E + G P Y++
Sbjct: 22 EVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLK 59
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNW 98
+EL KKGDI+F+ R W
Sbjct: 19 SELPLKKGDIVFISRDEPSGW 39
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNW 98
+EL KKGDI+F+ R W
Sbjct: 18 SELPLKKGDIVFISRDEPSGW 38
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNW 98
+EL KKGDI+F+ R W
Sbjct: 18 SELPLKKGDIVFISRDEPSGW 38
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 79 ELSFKKGDIIFVRRQVDK---NWYEGEHNAMIGLFPFNYVEIIP--YDK 122
ELSF+KGDI+ V Q + W+ + G+ P N ++I+ YDK
Sbjct: 19 ELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 67
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWY--EGEHNAMIGLFPFNYVEII 118
+N EL +GDI+F+ + + W E E + GL P +V I
Sbjct: 13 ENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 20/125 (16%)
Query: 99 YEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARAKFNFVAQ------------TH 146
YEG IGL ++ ++ K+ K EG+ A FN ++ H
Sbjct: 67 YEGSTFTFIGLSLYSLHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGH 126
Query: 147 LELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYL 206
VKE Y D ++ R RNE + L + Q A+ ++Y E L
Sbjct: 127 TSFKKVKE-KRDYGDLHFSVLAIRSARNEFR------ALQKLQGLAVPKVYAWE-GNAVL 178
Query: 207 QELHD 211
EL D
Sbjct: 179 XELID 183
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAM--IGLFPFNYV 115
L+D +R D LSFKKG+ + + +W+E A G P NYV
Sbjct: 11 LYDYEARTTED----LSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEG-EHNAMIGLFPFNYV 115
N +L +KGD F+ + + W+ + N G P NYV
Sbjct: 21 NANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,214,227
Number of Sequences: 62578
Number of extensions: 239427
Number of successful extensions: 1090
Number of sequences better than 100.0: 231
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 255
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)