Query psy15850
Match_columns 225
No_of_seqs 301 out of 1847
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4225|consensus 99.7 2.2E-17 4.7E-22 143.9 9.9 107 62-173 233-344 (489)
2 KOG1029|consensus 99.7 5.1E-17 1.1E-21 149.4 3.6 123 58-185 978-1105(1118)
3 KOG4226|consensus 99.6 3.5E-16 7.5E-21 129.3 7.2 115 62-180 110-241 (379)
4 KOG4348|consensus 99.6 7.3E-17 1.6E-21 140.6 2.5 127 53-183 94-313 (627)
5 PF14604 SH3_9: Variant SH3 do 99.6 8.3E-16 1.8E-20 97.4 6.2 49 64-116 1-49 (49)
6 KOG4348|consensus 99.6 5E-17 1.1E-21 141.6 -0.1 117 62-183 4-150 (627)
7 KOG1029|consensus 99.6 2.4E-15 5.1E-20 138.6 4.4 122 59-186 693-865 (1118)
8 PF07653 SH3_2: Variant SH3 do 99.5 3.2E-14 6.9E-19 92.3 6.7 54 61-118 1-55 (55)
9 KOG2199|consensus 99.4 1.4E-14 3E-19 125.2 0.8 148 59-213 215-368 (462)
10 KOG2070|consensus 99.4 1.5E-13 3.3E-18 121.6 2.6 60 56-119 14-73 (661)
11 KOG3601|consensus 99.4 1.7E-14 3.7E-19 115.4 -4.1 149 63-215 4-175 (222)
12 PF00018 SH3_1: SH3 domain; I 99.3 4E-12 8.7E-17 80.0 5.9 46 63-112 1-48 (48)
13 KOG1118|consensus 99.3 4.7E-13 1E-17 112.4 2.1 56 60-119 307-362 (366)
14 smart00326 SH3 Src homology 3 99.3 1.9E-11 4E-16 78.9 6.3 54 60-117 3-57 (58)
15 KOG4226|consensus 99.2 9.7E-12 2.1E-16 103.2 5.8 128 60-193 5-167 (379)
16 KOG4792|consensus 99.2 4.4E-12 9.6E-17 102.6 2.8 117 59-180 124-276 (293)
17 cd00174 SH3 Src homology 3 dom 99.2 3.9E-11 8.5E-16 76.4 5.8 51 62-116 2-53 (54)
18 KOG4225|consensus 99.2 4E-11 8.7E-16 105.1 5.4 104 62-170 307-469 (489)
19 KOG0162|consensus 99.1 9E-12 2E-16 114.9 1.2 54 60-117 1052-1105(1106)
20 KOG2996|consensus 99.1 1.3E-11 2.9E-16 111.4 2.2 90 14-118 771-862 (865)
21 KOG1264|consensus 99.1 1.2E-10 2.5E-15 108.7 7.1 149 60-212 775-936 (1267)
22 KOG3632|consensus 99.0 4.7E-10 1E-14 106.3 6.6 123 60-182 1139-1301(1335)
23 KOG2856|consensus 98.9 2.6E-10 5.7E-15 98.1 0.3 55 60-118 415-471 (472)
24 KOG2546|consensus 98.8 3.1E-09 6.7E-14 93.1 4.7 55 62-120 426-480 (483)
25 KOG4278|consensus 98.7 1.9E-08 4.1E-13 92.8 6.3 119 59-182 90-231 (1157)
26 KOG3601|consensus 98.6 1.1E-08 2.3E-13 82.4 2.0 59 56-118 160-218 (222)
27 KOG0515|consensus 98.6 1.1E-08 2.5E-13 91.9 1.7 54 62-119 686-742 (752)
28 KOG3875|consensus 98.5 1.3E-08 2.7E-13 86.1 -1.0 57 60-120 269-332 (362)
29 KOG3655|consensus 98.5 2.4E-08 5.2E-13 88.8 0.7 54 61-118 429-483 (484)
30 KOG0197|consensus 98.5 8E-08 1.7E-12 86.6 3.8 121 60-184 12-172 (468)
31 KOG1702|consensus 98.5 1.2E-07 2.5E-12 76.0 3.4 55 60-118 208-264 (264)
32 KOG1843|consensus 98.3 1.9E-07 4.2E-12 81.7 2.2 55 59-117 416-472 (473)
33 KOG0609|consensus 98.3 2.4E-08 5.1E-13 90.2 -4.4 61 59-119 214-282 (542)
34 KOG2996|consensus 98.3 6.6E-07 1.4E-11 81.6 3.8 123 64-186 609-767 (865)
35 KOG2222|consensus 98.1 2.6E-07 5.6E-12 82.6 -2.1 57 60-120 549-605 (848)
36 KOG3523|consensus 97.9 7.6E-07 1.6E-11 81.5 -2.6 57 61-121 610-668 (695)
37 PF14604 SH3_9: Variant SH3 do 97.8 9.7E-06 2.1E-10 51.0 1.7 45 137-182 1-45 (49)
38 KOG4792|consensus 97.6 2.9E-05 6.3E-10 63.4 2.4 60 59-120 227-286 (293)
39 KOG2528|consensus 97.6 2.9E-05 6.2E-10 69.0 2.4 59 61-123 4-64 (490)
40 KOG1451|consensus 97.6 3.7E-05 8.1E-10 70.5 2.8 54 61-118 758-812 (812)
41 KOG4773|consensus 97.6 7.6E-06 1.6E-10 70.5 -1.6 55 62-120 178-232 (386)
42 KOG3775|consensus 97.5 4E-05 8.8E-10 66.7 2.1 57 62-122 265-323 (482)
43 PF07653 SH3_2: Variant SH3 do 97.5 6.9E-05 1.5E-09 48.1 2.0 49 135-183 2-50 (55)
44 PF00018 SH3_1: SH3 domain; I 97.4 9.8E-05 2.1E-09 46.0 2.3 34 136-170 1-34 (48)
45 KOG3632|consensus 97.4 0.00014 3E-09 70.2 3.3 61 60-120 1245-1309(1335)
46 KOG3557|consensus 97.3 4.3E-05 9.3E-10 70.6 -0.2 58 59-121 500-558 (721)
47 KOG4575|consensus 97.3 0.00023 5.1E-09 65.8 4.5 58 59-120 8-67 (874)
48 KOG4429|consensus 97.3 0.00018 3.9E-09 60.9 2.6 53 62-118 366-418 (421)
49 KOG2199|consensus 97.2 0.00014 3E-09 64.0 1.7 51 131-182 214-264 (462)
50 KOG3771|consensus 97.0 0.00024 5.3E-09 63.7 1.4 54 60-117 401-455 (460)
51 KOG2070|consensus 96.9 0.00073 1.6E-08 61.1 3.4 53 133-186 18-70 (661)
52 KOG3725|consensus 96.4 0.00071 1.5E-08 56.5 -0.4 55 60-118 318-374 (375)
53 KOG1118|consensus 96.4 0.0012 2.7E-08 56.3 1.0 52 131-183 305-356 (366)
54 KOG0162|consensus 96.4 0.0033 7.1E-08 59.5 3.8 52 131-183 1050-1101(1106)
55 cd00174 SH3 Src homology 3 dom 96.3 0.0029 6.3E-08 39.3 2.1 36 135-171 2-37 (54)
56 smart00326 SH3 Src homology 3 96.3 0.0036 7.8E-08 39.4 2.5 48 133-181 3-51 (58)
57 KOG0515|consensus 96.3 0.0027 5.9E-08 58.0 2.5 53 131-184 682-737 (752)
58 KOG2546|consensus 95.8 0.0016 3.5E-08 57.8 -1.1 59 106-182 414-472 (483)
59 KOG2856|consensus 95.8 0.0069 1.5E-07 53.0 2.6 52 133-184 415-467 (472)
60 PF08239 SH3_3: Bacterial SH3 95.6 0.037 8E-07 35.0 5.1 38 79-116 16-55 (55)
61 KOG3565|consensus 94.8 0.0072 1.6E-07 57.4 -0.4 56 60-119 579-637 (640)
62 PF14603 hSH3: Helically-exten 94.5 0.054 1.2E-06 37.9 3.7 43 77-119 30-73 (89)
63 KOG0199|consensus 94.3 0.047 1E-06 52.2 3.8 50 62-117 379-431 (1039)
64 KOG1264|consensus 94.1 0.034 7.4E-07 53.5 2.5 52 131-183 773-825 (1267)
65 smart00287 SH3b Bacterial SH3 93.5 0.17 3.6E-06 32.7 4.4 37 79-115 24-61 (63)
66 KOG1702|consensus 93.1 0.059 1.3E-06 43.7 2.0 37 133-170 208-244 (264)
67 KOG0040|consensus 92.4 0.0039 8.5E-08 62.9 -6.6 56 62-121 971-1026(2399)
68 PRK10884 SH3 domain-containing 91.5 0.22 4.8E-06 40.8 3.6 41 79-119 47-89 (206)
69 PF06347 SH3_4: Bacterial SH3 90.8 0.67 1.5E-05 29.3 4.6 36 79-115 18-53 (55)
70 KOG3812|consensus 90.8 0.12 2.7E-06 45.1 1.4 51 62-112 61-117 (475)
71 KOG3705|consensus 87.1 0.55 1.2E-05 42.0 2.9 53 61-117 511-565 (580)
72 PF00017 SH2: SH2 domain; Int 86.9 0.7 1.5E-05 31.1 2.8 51 130-180 19-77 (77)
73 KOG4429|consensus 86.7 0.36 7.8E-06 41.4 1.5 51 134-185 365-415 (421)
74 KOG3655|consensus 84.1 0.48 1E-05 43.1 1.1 40 132-172 427-466 (484)
75 KOG2222|consensus 83.9 0.31 6.8E-06 44.5 -0.1 50 133-183 549-598 (848)
76 KOG3875|consensus 83.1 0.22 4.9E-06 42.9 -1.3 52 133-184 269-326 (362)
77 PRK13914 invasion associated s 82.6 1.9 4.2E-05 39.7 4.4 39 79-117 102-141 (481)
78 smart00252 SH2 Src homology 2 81.1 1.3 2.9E-05 30.2 2.2 52 132-183 22-81 (84)
79 KOG4773|consensus 80.7 0.29 6.4E-06 42.8 -1.4 109 61-182 91-224 (386)
80 KOG1843|consensus 80.5 1 2.3E-05 40.3 1.8 48 134-181 418-466 (473)
81 cd00173 SH2 Src homology 2 dom 80.1 1.9 4.2E-05 29.9 2.8 56 130-185 19-82 (94)
82 smart00743 Agenet Tudor-like d 80.0 2.4 5.1E-05 27.2 3.0 23 81-103 2-24 (61)
83 KOG4278|consensus 79.6 1.3 2.9E-05 42.3 2.3 31 133-163 91-121 (1157)
84 COG3103 SH3 domain protein [Si 79.0 3.3 7.2E-05 33.9 4.2 41 79-119 47-89 (205)
85 KOG4637|consensus 77.2 2.1 4.6E-05 37.9 2.7 56 131-186 43-105 (464)
86 KOG4384|consensus 73.2 1.9 4.1E-05 37.9 1.4 58 62-121 139-196 (361)
87 KOG3771|consensus 71.2 3.3 7.2E-05 37.7 2.5 37 133-169 401-437 (460)
88 KOG3523|consensus 70.8 4.3 9.2E-05 38.3 3.2 50 134-184 610-661 (695)
89 KOG0197|consensus 68.4 3.4 7.4E-05 38.0 2.0 56 132-187 11-68 (468)
90 PF11302 DUF3104: Protein of u 66.8 7.1 0.00015 26.6 2.8 24 79-102 3-32 (75)
91 KOG0790|consensus 63.2 4.8 0.0001 36.7 1.9 53 131-183 25-84 (600)
92 KOG3557|consensus 53.4 5.5 0.00012 37.9 0.6 29 134-162 502-530 (721)
93 PF12913 SH3_6: SH3 domain of 50.3 51 0.0011 21.0 4.5 34 79-112 20-54 (54)
94 KOG0609|consensus 47.0 21 0.00046 33.3 3.3 61 134-195 216-288 (542)
95 KOG3725|consensus 46.6 16 0.00034 31.0 2.2 39 132-170 317-356 (375)
96 KOG2528|consensus 44.6 11 0.00024 34.3 1.1 38 134-171 4-41 (490)
97 KOG0199|consensus 44.0 16 0.00035 35.7 2.1 50 135-184 377-428 (1039)
98 KOG4637|consensus 40.7 26 0.00056 31.4 2.7 58 128-186 349-414 (464)
99 KOG3580|consensus 39.4 47 0.001 31.8 4.3 48 61-112 506-562 (1027)
100 KOG4575|consensus 38.2 26 0.00056 33.6 2.5 45 132-176 8-52 (874)
101 PF14077 WD40_alt: Alternative 35.8 47 0.001 20.3 2.5 21 195-215 23-43 (48)
102 cd05705 S1_Rrp5_repeat_hs14 S1 33.4 1E+02 0.0023 20.4 4.3 31 82-112 1-33 (74)
103 KOG3565|consensus 31.7 26 0.00056 33.8 1.4 53 130-182 576-630 (640)
104 PF05641 Agenet: Agenet domain 30.1 55 0.0012 21.4 2.5 14 82-95 1-14 (68)
105 smart00333 TUDOR Tudor domain. 29.2 94 0.002 19.0 3.4 22 81-103 2-23 (57)
106 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 29.0 93 0.002 20.9 3.6 33 82-115 4-39 (86)
107 KOG1314|consensus 28.0 43 0.00093 29.8 2.0 42 76-118 330-383 (414)
108 PF00575 S1: S1 RNA binding do 27.8 88 0.0019 20.2 3.2 34 82-115 2-37 (74)
109 PRK06676 rpsA 30S ribosomal pr 22.6 1.5E+02 0.0033 26.3 4.7 35 81-116 14-52 (390)
110 PRK13545 tagH teichoic acids e 22.3 95 0.0021 29.4 3.3 37 84-120 374-416 (549)
111 KOG0790|consensus 21.5 90 0.0019 28.9 2.9 58 130-187 130-203 (600)
112 PRK07899 rpsA 30S ribosomal pr 21.0 2E+02 0.0044 26.8 5.2 34 81-115 32-68 (486)
113 KOG0708|consensus 20.4 21 0.00046 31.7 -1.2 46 58-103 65-111 (359)
No 1
>KOG4225|consensus
Probab=99.72 E-value=2.2e-17 Score=143.91 Aligned_cols=107 Identities=39% Similarity=0.681 Sum_probs=90.9
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCCCC----CCCc-CCCCcCcEE
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKI----RTAP-KKLSEGQAR 136 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~~~----~~~~-~~~~~~~~~ 136 (225)
++|+|+|.++ ...||+|++||||.|+.+.|.+|+.|+.+|+.|+||+|||+.+..... .+.| +....|.++
T Consensus 233 aralf~F~~q----t~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~ 308 (489)
T KOG4225|consen 233 ARALFDFEAQ----TPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAI 308 (489)
T ss_pred hhheeccccC----CccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCccccccccccc
Confidence 7899999999 788999999999999999999999999999999999999999875221 2222 223577899
Q ss_pred EcccccCCCccccccccccceEEecccccccccccch
Q psy15850 137 AKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVR 173 (225)
Q Consensus 137 a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~ 173 (225)
|.|+|.+....||++++|+.|+.... +++.|..+.+
T Consensus 309 A~y~F~~~s~~Els~~kge~v~L~r~-vd~nw~eG~i 344 (489)
T KOG4225|consen 309 AKYNFNADSPVELSLRKGERVTLTRQ-VDENWYEGKI 344 (489)
T ss_pred ccCCCCCCCchhcccccCceEEEEEe-ccCceeeccc
Confidence 99999999999999999999998875 6666664333
No 2
>KOG1029|consensus
Probab=99.65 E-value=5.1e-17 Score=149.40 Aligned_cols=123 Identities=24% Similarity=0.386 Sum_probs=105.5
Q ss_pred cceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEE--CC---eEEEeeCCcEEeecCCCCCCCcCCCCc
Q psy15850 58 RRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NA---MIGLFPFNYVEIIPYDKIRTAPKKLSE 132 (225)
Q Consensus 58 ~~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~--~g---~~G~~P~nyv~~~~~~~~~~~~~~~~~ 132 (225)
+++.++.+.+|.+. ....|++..|++|.|..+...|||.|++ +| ..||||.+||+.+.....+..|...+.
T Consensus 978 kpeiAqVia~yvAs----~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v 1053 (1118)
T KOG1029|consen 978 KPEIAQVIADYVAS----GPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPV 1053 (1118)
T ss_pred Cchhhhhhhhhhcc----CchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCcc
Confidence 45567888999999 7889999999999999999999999995 45 369999999999987755566665666
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchhHH
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEEL 185 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~e~ 185 (225)
+.++|+|+|.+++++||+|.+||+|.|+.+ ..-.||.+-+|.+..+++.+.+
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~Vlnk-depeWW~Ge~ng~sGLFPSNYV 1105 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNK-DEPEWWSGERNGKSGLFPSNYV 1105 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCC-CChhhhcccccCccccCccccc
Confidence 788999999999999999999999999998 4557888888999888887553
No 3
>KOG4226|consensus
Probab=99.64 E-value=3.5e-16 Score=129.31 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=86.6
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCCCCCCCc----C------CC-
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAP----K------KL- 130 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~~~~~~~----~------~~- 130 (225)
+..-|.|.|+ .++||++.+|+.|.|+++..+|||+|..+|..||||+|||.+.........+ . .+
T Consensus 110 AvVKf~Y~a~----~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~ 185 (379)
T KOG4226|consen 110 AVVKFNYVAE----REDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNG 185 (379)
T ss_pred eEEEEeeccc----cccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCC
Confidence 4567999999 7999999999999999999999999999999999999999886433221111 0 01
Q ss_pred C----cCcEEEcccccCCCccccccccccceEEeccc-cc-ccccccchhhhhhcc
Q psy15850 131 S----EGQARAKFNFVAQTHLELSLVKESPHKYVDSE-VT-LQYRRPVRNEIKELI 180 (225)
Q Consensus 131 ~----~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~-~~-~~~~f~~~~~l~e~~ 180 (225)
. -..+.|+|+|++.++.||+|++|+...+++.- .+ +||.-.-.+.-+.++
T Consensus 186 ~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLV 241 (379)
T KOG4226|consen 186 QGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLV 241 (379)
T ss_pred CCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCcccee
Confidence 1 12367999999999999999999999999873 33 445433333333333
No 4
>KOG4348|consensus
Probab=99.63 E-value=7.3e-17 Score=140.56 Aligned_cols=127 Identities=23% Similarity=0.354 Sum_probs=101.9
Q ss_pred hhhcccceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCCCC---------
Q psy15850 53 YQEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKI--------- 123 (225)
Q Consensus 53 ~~~~~~~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~~~--------- 123 (225)
.+..++...|.+.|.|.++ +.+||.|+.||+|.|+.....|||.|.++|+.|+||+|||..++....
T Consensus 94 ~~~q~~~r~c~v~f~Y~pq----ndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~ 169 (627)
T KOG4348|consen 94 PPPQPQARICVVTFAYSPQ----NDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPA 169 (627)
T ss_pred CCCCccceeEEEEEeecCC----CCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcc
Confidence 3344556679999999999 899999999999999999999999999999999999999999853311
Q ss_pred ------------------------CC--Cc---------------------------------------------CC---
Q psy15850 124 ------------------------RT--AP---------------------------------------------KK--- 129 (225)
Q Consensus 124 ------------------------~~--~~---------------------------------------------~~--- 129 (225)
+. .| +.
T Consensus 170 ~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~ 249 (627)
T KOG4348|consen 170 ASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDI 249 (627)
T ss_pred cchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccc
Confidence 00 00 00
Q ss_pred ---------CCcCcEEEcccccCCCccccccccccceEEeccc-ccccccccchhhhhhccchh
Q psy15850 130 ---------LSEGQARAKFNFVAQTHLELSLVKESPHKYVDSE-VTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 130 ---------~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~-~~~~~~f~~~~~l~e~~~~~ 183 (225)
.....|.+.|-|.+++++||+|++||++..+.++ ..-|||.+.+|+-...++.+
T Consensus 250 tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDN 313 (627)
T KOG4348|consen 250 TKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDN 313 (627)
T ss_pred cccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCch
Confidence 0112489999999999999999999999888865 44799999999888777653
No 5
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.63 E-value=8.3e-16 Score=97.38 Aligned_cols=49 Identities=47% Similarity=0.803 Sum_probs=44.8
Q ss_pred EeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEE
Q psy15850 64 ELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116 (225)
Q Consensus 64 al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~ 116 (225)
|+|||.++ ..+||+|++||+|.|+.+.+++||.|+.+|+.|+||+|||+
T Consensus 1 Al~~y~~~----~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQ----DPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSS----STTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCC----CcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 78999999 78899999999999999989999999999999999999996
No 6
>KOG4348|consensus
Probab=99.62 E-value=5e-17 Score=141.59 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=97.1
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCC-----CC-------------
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD-----KI------------- 123 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~-----~~------------- 123 (225)
+..-|||+|. ..+||+++.|+||.-+.+.+.|||.|+++|+.|.||-|||..+... -.
T Consensus 4 ~ive~dy~a~----hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s 79 (627)
T KOG4348|consen 4 YIVEYDYDAV----HDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTS 79 (627)
T ss_pred eeeecccccc----cCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhccc
Confidence 4577999999 8999999999999988888999999999999999999999887422 00
Q ss_pred -CC-----------CcCCCCcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchh
Q psy15850 124 -RT-----------APKKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 124 -~~-----------~~~~~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~ 183 (225)
.+ .+.+.....|.+.|.|.+++++||.|+.||+|.++.. +.+|||.+.+|.-+.+++.+
T Consensus 80 ~n~l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~e-VEeGWw~G~Lngk~GmFPsN 150 (627)
T KOG4348|consen 80 RNPLTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISE-VEEGWWKGKLNGKVGMFPSN 150 (627)
T ss_pred CCCccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhH-hhhhhhhceecCcccccchh
Confidence 00 0011233569999999999999999999999999987 99999998888888777653
No 7
>KOG1029|consensus
Probab=99.55 E-value=2.4e-15 Score=138.55 Aligned_cols=122 Identities=25% Similarity=0.330 Sum_probs=98.3
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEE--ecCCCeEEEEECCeEEEeeCCcEEeecCCCC----CC-------
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRR--QVDKNWYEGEHNAMIGLFPFNYVEIIPYDKI----RT------- 125 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~--~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~~~----~~------- 125 (225)
..++||||.|.++ +.+|++|..||||.|-. ...+||.-|+++|+.||||.|||+.++.... .+
T Consensus 693 ~vkyrAly~FeaR----s~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~ 768 (1118)
T KOG1029|consen 693 TVKYRALYPFEAR----SHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPT 768 (1118)
T ss_pred eEEEeeecccccC----CcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCC
Confidence 4568999999999 89999999999998875 3568999999999999999999998853321 00
Q ss_pred -------------------------Cc--------CCCCcC-----cEEEcccccCCCccccccccccceEEeccccccc
Q psy15850 126 -------------------------AP--------KKLSEG-----QARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQ 167 (225)
Q Consensus 126 -------------------------~~--------~~~~~~-----~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~ 167 (225)
.+ ..+..+ .|+|+|.+.+..+..|+|.+||+|+||+. .+-
T Consensus 769 ~~psas~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~Vlek--qem 846 (1118)
T KOG1029|consen 769 MTPSASVNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEK--QEM 846 (1118)
T ss_pred CCcccccccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehh--ccc
Confidence 00 000011 47899999999999999999999999985 567
Q ss_pred ccccchhhhhhccchhHHH
Q psy15850 168 YRRPVRNEIKELISEEELA 186 (225)
Q Consensus 168 ~~f~~~~~l~e~~~~~e~~ 186 (225)
|||+....-+.|++++.+-
T Consensus 847 wW~G~v~g~~GwFPksYVk 865 (1118)
T KOG1029|consen 847 WWFGEVAGEIGWFPKSYVK 865 (1118)
T ss_pred eecccccCccCcCcHHhhh
Confidence 9999988999999886654
No 8
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.52 E-value=3.2e-14 Score=92.33 Aligned_cols=54 Identities=44% Similarity=0.742 Sum_probs=47.9
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEE-EecCCCeEEEEECCeEEEeeCCcEEee
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVR-RQVDKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~-~~~~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
+++|++||.+. ..++|+|++||+|.|+ ++.+++||.|+.+|+.||||++||+++
T Consensus 1 ~~~a~~d~~~~----~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAE----DPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESS----STTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCC----CCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 47899999998 7889999999999999 888889999999999999999999863
No 9
>KOG2199|consensus
Probab=99.45 E-value=1.4e-14 Score=125.25 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=86.5
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeec-CCCCCCCcCCCCcCcEEE
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP-YDKIRTAPKKLSEGQARA 137 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~-~~~~~~~~~~~~~~~~~a 137 (225)
.+.|||||||++. ..+||+|++||||.|++..+.+||+|++.+..|+||+|||...- ...............+++
T Consensus 215 ~rkVRALYDFeAa----E~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~le~~~~ee~~~~~~~~E~~v 290 (462)
T KOG2199|consen 215 VRKVRALYDFEAA----EDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADLEEPKIEEQEQKQKNKEAIV 290 (462)
T ss_pred chhhhhhhccccc----CCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhhcccchhhhhhhhcCcceee
Confidence 4458999999999 68899999999999999999999999999999999999998753 211111110000011111
Q ss_pred cccccCCCccccccc-cccce-EEeccc---ccccccccchhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15850 138 KFNFVAQTHLELSLV-KESPH-KYVDSE---VTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDI 212 (225)
Q Consensus 138 ~~~~~~~~~~els~~-~g~~v-~~~~~~---~~~~~~f~~~~~l~e~~~~~e~~~~~~~~l~~~~~~~~~~~~lq~l~D~ 212 (225)
..+. +.-+..|-+. .-+.- ...+.+ ..++-.-...+.+...+.+ +.|.+.+++.....+.--...++.|++.
T Consensus 291 fi~e-~~iDrlL~~L~~~dPtd~~~D~~~l~~le~~~~~mgPlid~~Le~--idrk~~eL~~Ln~~l~~Al~lY~kLm~~ 367 (462)
T KOG2199|consen 291 FIDE-DKIDRLLQVLHEADPTDEVQDDDDLLDLEAAVHQMGPLIDRKLEK--IDRKHEELSQLNVKLLDALRLYNKLMNE 367 (462)
T ss_pred eccH-HHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHhhhHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 0000000000 00000 000000 0011112233334444433 7788888888888877777888888886
Q ss_pred c
Q psy15850 213 S 213 (225)
Q Consensus 213 ~ 213 (225)
.
T Consensus 368 ~ 368 (462)
T KOG2199|consen 368 A 368 (462)
T ss_pred C
Confidence 6
No 10
>KOG2070|consensus
Probab=99.38 E-value=1.5e-13 Score=121.64 Aligned_cols=60 Identities=35% Similarity=0.578 Sum_probs=55.3
Q ss_pred cccceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeec
Q psy15850 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 56 ~~~~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~ 119 (225)
...+-.++|-|.|... +.|||+|.+||+|.|+...+.|||+|.++|++||||+|||..+.
T Consensus 14 s~~pLvvrAkf~F~gs----NnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 14 SNNPLVVRAKFNFQGS----NNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred CCCceEEEEEeecccC----CCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 3345568999999999 89999999999999999999999999999999999999999876
No 11
>KOG3601|consensus
Probab=99.36 E-value=1.7e-14 Score=115.36 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=120.1
Q ss_pred EEeecccCCCCCCCCccccccCCCeEEEEEecCC-CeEEEEECCeEEEeeCCcEEeecCCCCCCCc---------CCCCc
Q psy15850 63 QELHDISSRRHTDNFTELSFKKGDIIFVRRQVDK-NWYEGEHNAMIGLFPFNYVEIIPYDKIRTAP---------KKLSE 132 (225)
Q Consensus 63 ~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~-~Ww~g~~~g~~G~~P~nyv~~~~~~~~~~~~---------~~~~~ 132 (225)
.+++||.+. ..+||+|.+||.+.+++..+. +|...+++|..|++|.||.+...+.|+...- .....
T Consensus 4 ~a~n~f~a~----i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~ 79 (222)
T KOG3601|consen 4 VAKNDFLAG----IRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRD 79 (222)
T ss_pred hhhhhhhhc----CcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCc
Confidence 478899998 789999999999998886554 8999999999999999999887777763211 22467
Q ss_pred CcEEEcccccCCCccccccccccceEEeccc--ccc---ccc--ccchhhhhhccchhHHHHHHHHHHHHHHH----HH-
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSE--VTL---QYR--RPVRNEIKELISEEELARRQAEAMRRIYQ----EE- 200 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~--~~~---~~~--f~~~~~l~e~~~~~e~~~~~~~~l~~~~~----~~- 200 (225)
|.++.+.+..+.++++++++.++.|..+.-. ..+ .|- |+++|+++.|++.++..+.+++++++++. +.
T Consensus 80 G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~ 159 (222)
T KOG3601|consen 80 GDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPP 159 (222)
T ss_pred chhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCC
Confidence 8899999999999999999999998554321 112 232 89999999999999999999999999983 11
Q ss_pred -HHHHHHHHHhhhccC
Q psy15850 201 -RRRKYLQELHDISSR 215 (225)
Q Consensus 201 -~~~~~lq~l~D~~~~ 215 (225)
-...|.|+++||...
T Consensus 160 ~~~~~yqQa~~df~~~ 175 (222)
T KOG3601|consen 160 APTNYYQQALYDFQPQ 175 (222)
T ss_pred CccchhhhhcCCCCCC
Confidence 245788999998753
No 12
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.32 E-value=4e-12 Score=80.05 Aligned_cols=46 Identities=37% Similarity=0.592 Sum_probs=41.6
Q ss_pred EEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEEC--CeEEEeeC
Q psy15850 63 QELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN--AMIGLFPF 112 (225)
Q Consensus 63 ~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~--g~~G~~P~ 112 (225)
+|+|||.+. ..+||+|++||+|.|+++.+.+||.|+.. ++.||||+
T Consensus 1 ~Alydf~~~----~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAE----DPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETS----STTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCC----CCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 599999999 78999999999999999999999999964 69999995
No 13
>KOG1118|consensus
Probab=99.32 E-value=4.7e-13 Score=112.41 Aligned_cols=56 Identities=45% Similarity=0.834 Sum_probs=53.2
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeec
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~ 119 (225)
..|||+|||+++ +..||.|++||+|.|+...|.+||.|+..|..|+||.|||+.+-
T Consensus 307 p~cralYdFepe----nEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 307 PCCRALYDFEPE----NEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV 362 (366)
T ss_pred hhheeeeccCCC----CCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence 458999999999 89999999999999999999999999999999999999999874
No 14
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.25 E-value=1.9e-11 Score=78.88 Aligned_cols=54 Identities=44% Similarity=0.722 Sum_probs=49.2
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEEC-CeEEEeeCCcEEe
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYVEI 117 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~-g~~G~~P~nyv~~ 117 (225)
..++|+|||.+. ..++|+|++||+|.++...+.+||.++.. ++.||||.+|++.
T Consensus 3 ~~~~a~~~~~~~----~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQ----DPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCC----CCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 357899999998 78899999999999999888999999976 9999999999975
No 15
>KOG4226|consensus
Probab=99.25 E-value=9.7e-12 Score=103.16 Aligned_cols=128 Identities=23% Similarity=0.284 Sum_probs=99.5
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE-ECCeEEEeeCCcEEeecCCCC---------------
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEIIPYDKI--------------- 123 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~-~~g~~G~~P~nyv~~~~~~~~--------------- 123 (225)
+++.|-|||.++ ...||.+++.+.+.+++. ...||+.+ ...+.|++|+|||+.......
T Consensus 5 ~~vvak~dy~aq----~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt 79 (379)
T KOG4226|consen 5 VIVVAKWDYTAQ----QDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKT 79 (379)
T ss_pred EEEEEEechhcc----cchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhcccccc
Confidence 568899999999 678999999999988864 45799998 567899999999986532111
Q ss_pred C---------CCcCC----C------CcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchhH
Q psy15850 124 R---------TAPKK----L------SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEE 184 (225)
Q Consensus 124 ~---------~~~~~----~------~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~e 184 (225)
. +.|.- + ..-.+.+.|.|.++-++||++.+|+.|.++++ -.+|||.++-|.-+.|++.+.
T Consensus 80 ~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEK-ssDGWWrG~~ng~VGWFPSNY 158 (379)
T KOG4226|consen 80 RRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEK-SSDGWWRGSYNGQVGWFPSNY 158 (379)
T ss_pred ccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEe-ccCcceecccCCeeccccccc
Confidence 0 00000 0 11237889999999999999999999999988 788999988899999999877
Q ss_pred HHHHHHHHH
Q psy15850 185 LARRQAEAM 193 (225)
Q Consensus 185 ~~~~~~~~l 193 (225)
+...-+.-.
T Consensus 159 v~E~~ds~~ 167 (379)
T KOG4226|consen 159 VTEEVDSAA 167 (379)
T ss_pred eehhccccc
Confidence 665544433
No 16
>KOG4792|consensus
Probab=99.22 E-value=4.4e-12 Score=102.57 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=84.3
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE-ECCeEEEeeCCcEEeecCCCC-----------CCC
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEIIPYDKI-----------RTA 126 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~-~~g~~G~~P~nyv~~~~~~~~-----------~~~ 126 (225)
..+++|+|||.+. +.++|.|++|+++.|+++.+..||.++ ..|+.|++|.+||+....... ...
T Consensus 124 ~~~vr~~fdF~G~----deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si 199 (293)
T KOG4792|consen 124 AEYVRALFDFNGN----DEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSI 199 (293)
T ss_pred hhheeeeeccCCC----ccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccC
Confidence 4578999999999 789999999999999999999999999 789999999999997642210 000
Q ss_pred cCC--------------------CCc--CcEEEcccc--cCCCccccccccccceEEecccccccccccchhhhhhcc
Q psy15850 127 PKK--------------------LSE--GQARAKFNF--VAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELI 180 (225)
Q Consensus 127 ~~~--------------------~~~--~~~~a~~~~--~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~ 180 (225)
++. ... ..+++..+- ++.+...|.++.|++|+|-...+++.|- +.+|.-+.++
T Consensus 200 ~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwe-gElnGk~G~f 276 (293)
T KOG4792|consen 200 PQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWE-GELNGKIGHF 276 (293)
T ss_pred CCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceee-eeecCccccc
Confidence 000 011 123444433 3557777999999999999987776664 3444444443
No 17
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.20 E-value=3.9e-11 Score=76.37 Aligned_cols=51 Identities=51% Similarity=0.796 Sum_probs=46.6
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECC-eEEEeeCCcEE
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNA-MIGLFPFNYVE 116 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g-~~G~~P~nyv~ 116 (225)
++|+|+|.+. ..++|+|.+||++.++...+.+||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~----~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDAR----DPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCC----CCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 5799999999 788999999999999998888999999766 99999999985
No 18
>KOG4225|consensus
Probab=99.15 E-value=4e-11 Score=105.10 Aligned_cols=104 Identities=29% Similarity=0.445 Sum_probs=84.1
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEEC--CeEEEeeCCcEEeecCCCC----------------
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHN--AMIGLFPFNYVEIIPYDKI---------------- 123 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~--g~~G~~P~nyv~~~~~~~~---------------- 123 (225)
++|.|+|.+. ...||++++|+.|.++...+.+|++|... ++.|+||.+||+.+.....
T Consensus 307 a~A~y~F~~~----s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s 382 (489)
T KOG4225|consen 307 AIAKYNFNAD----SPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSS 382 (489)
T ss_pred ccccCCCCCC----CchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccc
Confidence 6899999999 78899999999999999999999999965 7899999999998743211
Q ss_pred ----------------------CCCc-----CC--------------CCcCcEEEcccccCCCccccccccccceEEecc
Q psy15850 124 ----------------------RTAP-----KK--------------LSEGQARAKFNFVAQTHLELSLVKESPHKYVDS 162 (225)
Q Consensus 124 ----------------------~~~~-----~~--------------~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~ 162 (225)
...+ .+ ...-.+.|+|+|.+++++||.|.+||+|.|+++
T Consensus 383 ~~~~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeK 462 (489)
T KOG4225|consen 383 NELRPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEK 462 (489)
T ss_pred hhhcccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeec
Confidence 0000 00 011236999999999999999999999999998
Q ss_pred cccccccc
Q psy15850 163 EVTLQYRR 170 (225)
Q Consensus 163 ~~~~~~~f 170 (225)
.++||.-
T Consensus 463 -cddgWfv 469 (489)
T KOG4225|consen 463 -CDDGWFV 469 (489)
T ss_pred -ccCccee
Confidence 7778873
No 19
>KOG0162|consensus
Probab=99.15 E-value=9e-12 Score=114.88 Aligned_cols=54 Identities=43% Similarity=0.655 Sum_probs=51.3
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEe
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~ 117 (225)
..|.|+|||.++ +.+||+|++||+|.|+.++..|||.|+.+|+.||||.|||++
T Consensus 1052 p~~~A~Y~y~gq----~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQ----DVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCC----CcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 468999999999 899999999999999999999999999999999999999975
No 20
>KOG2996|consensus
Probab=99.14 E-value=1.3e-11 Score=111.36 Aligned_cols=90 Identities=26% Similarity=0.455 Sum_probs=64.3
Q ss_pred ccccCccccccCCCCcCccccCCCHHHHHHHHHHHHHhhhhhcccceEEEEeecccCCCCCCCCccccccCCCeEEEEEe
Q psy15850 14 SIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQ 93 (225)
Q Consensus 14 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~ 93 (225)
+.+++.+..||++|..+....+ .........+.+.-.+.|-|||.++ +..||||++||+|.|..+
T Consensus 771 k~LDTtLk~Pyke~e~sa~~~~-----------~~~~~sv~s~~~~g~AvarYdf~ar----d~~eLSlk~GDvV~i~~k 835 (865)
T KOG2996|consen 771 KALDTTLKFPYKEPEHSAGQRG-----------NRAGNSVLSPKVVGTAVARYDFCAR----DMRELSLKEGDVVKIYDK 835 (865)
T ss_pred HHhhhhhcCCCcChhhhhhhcc-----------ccccccccCcceeeeeeeccccCCC----chhhcccccCCEEEEehh
Confidence 4566677778877755444311 1111112222333346788999999 788999999999998875
Q ss_pred c--CCCeEEEEECCeEEEeeCCcEEee
Q psy15850 94 V--DKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 94 ~--~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
. |.|||+|+.+|+.||||++||++-
T Consensus 836 ~g~d~GWWkGevngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 836 VGEDQGWWKGEVNGRVGWFPSTYVEED 862 (865)
T ss_pred ccccCceecceecCccccccccccccc
Confidence 3 579999999999999999999874
No 21
>KOG1264|consensus
Probab=99.12 E-value=1.2e-10 Score=108.71 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=94.0
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCe-EEEeeCCcEEeecCCCCCCCcC-----CCCcC
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAM-IGLFPFNYVEIIPYDKIRTAPK-----KLSEG 133 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~-~G~~P~nyv~~~~~~~~~~~~~-----~~~~~ 133 (225)
+.|+|||||.+. .++||||.+|-||.++.+...+||.|..+|+ .+|||+|||+.+..+....... .+...
T Consensus 775 vt~kAL~~Yka~----r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~~~~~e~~~lne~plGt 850 (1267)
T KOG1264|consen 775 VTVKALYDYKAK----RSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTADFEELEKQILNENPLGT 850 (1267)
T ss_pred hhhhhhhccccC----CcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccccccchhhhhhcccccch
Confidence 458999999999 7899999999999999999999999999875 8999999999987654422211 11122
Q ss_pred cEEEcccccCCCccccccccccceEEeccc--cccccc----ccchhhhhhccchh-HHHHHHHHHHHHHHHHHHHHHHH
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDSE--VTLQYR----RPVRNEIKELISEE-ELARRQAEAMRRIYQEERRRKYL 206 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~~--~~~~~~----f~~~~~l~e~~~~~-e~~~~~~~~l~~~~~~~~~~~~l 206 (225)
.+....+....+....+..+++..-++..+ +...|- +.+..++-+|+..= +++..-.-.+..+---+++.++.
T Consensus 851 l~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~tk~s~~k~kEk~krIA 930 (1267)
T KOG1264|consen 851 LCRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADTKESEMKYKEKNKRIA 930 (1267)
T ss_pred hhhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 233345555555555555565554444332 222222 46667777776542 33333333333222233556666
Q ss_pred HHHhhh
Q psy15850 207 QELHDI 212 (225)
Q Consensus 207 q~l~D~ 212 (225)
.+|-|+
T Consensus 931 ~ElSdL 936 (1267)
T KOG1264|consen 931 IELSDL 936 (1267)
T ss_pred HHhhce
Confidence 666554
No 22
>KOG3632|consensus
Probab=99.01 E-value=4.7e-10 Score=106.31 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=92.1
Q ss_pred eEEEEeecccCCCCCCCC----ccccccCCCeEEEEE-ecCCCeEEEEECCeEEEeeCCcEEeecCCCC----------C
Q psy15850 60 KYLQELHDISSRRHTDNF----TELSFKKGDIIFVRR-QVDKNWYEGEHNAMIGLFPFNYVEIIPYDKI----------R 124 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~----~eLs~~~Gdii~v~~-~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~~~----------~ 124 (225)
....|+|||++...++|. .||+|++|+||.|.. ++.+|++.|+++|+.|+||+|+|.++..... .
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~l 1218 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGLL 1218 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhccC
Confidence 345699999998766654 499999999999885 6778999999999999999999998754331 0
Q ss_pred CCc----------------C--CCCcCcEEEcccccCC-------CccccccccccceEEecccccccccccchhhhhhc
Q psy15850 125 TAP----------------K--KLSEGQARAKFNFVAQ-------THLELSLVKESPHKYVDSEVTLQYRRPVRNEIKEL 179 (225)
Q Consensus 125 ~~~----------------~--~~~~~~~~a~~~~~~~-------~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~ 179 (225)
+.. . +.....++|.++|.++ ++.+|.|+.||+|.|+..-..+|+..+-+|.-+..
T Consensus 1219 Psv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkgl 1298 (1335)
T KOG3632|consen 1219 PSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGL 1298 (1335)
T ss_pred CCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCc
Confidence 000 0 0122257888999875 56789999999999999866677776666665555
Q ss_pred cch
Q psy15850 180 ISE 182 (225)
Q Consensus 180 ~~~ 182 (225)
.+.
T Consensus 1299 vps 1301 (1335)
T KOG3632|consen 1299 VPS 1301 (1335)
T ss_pred ccc
Confidence 544
No 23
>KOG2856|consensus
Probab=98.90 E-value=2.6e-10 Score=98.06 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=48.5
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEE-ecCCCeEEEEEC-CeEEEeeCCcEEee
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRR-QVDKNWYEGEHN-AMIGLFPFNYVEII 118 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~-~~~~~Ww~g~~~-g~~G~~P~nyv~~~ 118 (225)
+.++|||||.++ ..+||+|+.||.+..+. .+..||.+|+++ |+.|++|+|||+.+
T Consensus 415 v~vraLYDY~gq----E~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQ----EGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcc----cccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 568999999999 78899999999998664 556699999987 99999999999865
No 24
>KOG2546|consensus
Probab=98.84 E-value=3.1e-09 Score=93.12 Aligned_cols=55 Identities=38% Similarity=0.723 Sum_probs=51.8
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecC
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~ 120 (225)
+.++|||.+. ..+||+|.+|-+|.|+++++++||+|-.+|.+|+||.|||+.+.+
T Consensus 426 Vv~iydy~~~----KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 426 VVAIYDYTAD----KDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLKA 480 (483)
T ss_pred HHhhcccccc----cccccccccccEEEEEEecCCcchhheecCcceeccCcccccccc
Confidence 6799999999 899999999999999999999999999999999999999998753
No 25
>KOG4278|consensus
Probab=98.73 E-value=1.9e-08 Score=92.77 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=91.3
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCC-CeEEEEE-CCeEEEeeCCcEEeec----CCCCC-CCc----
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDK-NWYEGEH-NAMIGLFPFNYVEIIP----YDKIR-TAP---- 127 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~-~Ww~g~~-~g~~G~~P~nyv~~~~----~~~~~-~~~---- 127 (225)
++...|||||.+. .+..|++.+|+.+.|+.-..+ .|.+++. +|+ ||||+||+.++. +.|+- +..
T Consensus 90 pNLFVALYDFvas----GdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLeKhsWYHGpvSRsaa 164 (1157)
T KOG4278|consen 90 PNLFVALYDFVAS----GDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLEKHSWYHGPVSRSAA 164 (1157)
T ss_pred CceeEeeeeeecc----ccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchhhcccccCccccchh
Confidence 4456799999999 788999999999999986544 5888884 555 999999998863 34441 111
Q ss_pred ----CCCCcCcEEEcccccCCCccccccccccceEEeccccc-c--ccc-----ccchhhhhhccch
Q psy15850 128 ----KKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVT-L--QYR-----RPVRNEIKELISE 182 (225)
Q Consensus 128 ----~~~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~-~--~~~-----f~~~~~l~e~~~~ 182 (225)
...-.|.|+++.+..+.+.+.+|++....|-+++.+.. . -|. |..+.||+.+|..
T Consensus 165 Ey~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHSt 231 (1157)
T KOG4278|consen 165 EYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHST 231 (1157)
T ss_pred hhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccc
Confidence 22356889999999999999999999888877765422 2 233 7888999988765
No 26
>KOG3601|consensus
Probab=98.65 E-value=1.1e-08 Score=82.38 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=53.9
Q ss_pred cccceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEee
Q psy15850 56 ERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 56 ~~~~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
.....|++|+|||.+. .+.+|.|++||.+.|+...+..||.|.+.|+.|+||++||...
T Consensus 160 ~~~~~yqQa~~df~~~----pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 160 APTNYYQQALYDFQPQ----PPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred CccchhhhhcCCCCCC----CchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 3567789999999999 6889999999999999999999999999999999999999654
No 27
>KOG0515|consensus
Probab=98.62 E-value=1.1e-08 Score=91.94 Aligned_cols=54 Identities=33% Similarity=0.537 Sum_probs=48.8
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecC---CCeEEEEECCeEEEeeCCcEEeec
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVD---KNWYEGEHNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~---~~Ww~g~~~g~~G~~P~nyv~~~~ 119 (225)
+-|+|||.++ +.+||+|+.||.+.|+.++| ..||.++++|++|+||.||+-..+
T Consensus 686 vYAlwdYeaq----f~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 686 VYALWDYEAQ----FEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred eEEeeccccc----ccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 6799999999 89999999999999998754 479999999999999999997764
No 28
>KOG3875|consensus
Probab=98.51 E-value=1.3e-08 Score=86.11 Aligned_cols=57 Identities=35% Similarity=0.529 Sum_probs=48.3
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecC-----CCeEEEE-E-CCeEEEeeCCcEEeecC
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVD-----KNWYEGE-H-NAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~-----~~Ww~g~-~-~g~~G~~P~nyv~~~~~ 120 (225)
.+++|+|||.++ ++.||+|++||++.|..+++ ..||... . ++..||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~----np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVAR----NPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcC----CHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 468999999999 78999999999999887654 4588877 4 56799999999999864
No 29
>KOG3655|consensus
Probab=98.51 E-value=2.4e-08 Score=88.79 Aligned_cols=54 Identities=41% Similarity=0.702 Sum_probs=49.9
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE-ECCeEEEeeCCcEEee
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEII 118 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~-~~g~~G~~P~nyv~~~ 118 (225)
.++|+|||.|. +..|++|..+|+|.++...+.|||.|. .+|..|+||+|||+.+
T Consensus 429 ~A~A~~dyqAA----ddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 429 TARALYDYQAA----DDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred Ccccccccccc----CCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 47899999999 788999999999999999999999999 5899999999999865
No 30
>KOG0197|consensus
Probab=98.51 E-value=8e-08 Score=86.64 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=92.0
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCe-EEEEEecCCCeEEEE--ECCeEEEeeCCcEEeec----------CCCCC--
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDI-IFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIP----------YDKIR-- 124 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdi-i~v~~~~~~~Ww~g~--~~g~~G~~P~nyv~~~~----------~~~~~-- 124 (225)
..+.|+|||.+. ...+|+|.+||+ ..+++..+..||.++ ..+..|++|+|||.... .+|..
T Consensus 12 ~~~valyd~~s~----~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~ 87 (468)
T KOG0197|consen 12 TIVVALYDYASR----TPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGK 87 (468)
T ss_pred ceEEEeccccCC----CccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcc
Confidence 357799999999 788999999999 668888888999988 36889999999998641 12220
Q ss_pred ---------CCcCCCCcCcEEEcccccCCCcccccccccc------ceEEeccc--cccc-c-------cccchhhhhhc
Q psy15850 125 ---------TAPKKLSEGQARAKFNFVAQTHLELSLVKES------PHKYVDSE--VTLQ-Y-------RRPVRNEIKEL 179 (225)
Q Consensus 125 ---------~~~~~~~~~~~~a~~~~~~~~~~els~~~g~------~v~~~~~~--~~~~-~-------~f~~~~~l~e~ 179 (225)
-...+...|.++++-+....+++.+++..++ .|++++.. ..++ + .|.++.+++.|
T Consensus 88 isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~ 167 (468)
T KOG0197|consen 88 ISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNY 167 (468)
T ss_pred ccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhh
Confidence 1113346688999999999999999999877 66666542 1222 3 18999999999
Q ss_pred cchhH
Q psy15850 180 ISEEE 184 (225)
Q Consensus 180 ~~~~e 184 (225)
+...+
T Consensus 168 ~~~~~ 172 (468)
T KOG0197|consen 168 YSKNA 172 (468)
T ss_pred hhccC
Confidence 98764
No 31
>KOG1702|consensus
Probab=98.47 E-value=1.2e-07 Score=75.97 Aligned_cols=55 Identities=31% Similarity=0.612 Sum_probs=49.5
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE--ECCeEEEeeCCcEEee
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEII 118 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~--~~g~~G~~P~nyv~~~ 118 (225)
+..+|+|||.|+ +.+|++|.-||.|..+...++||..|. .+|.+|..|+||++.+
T Consensus 208 ktyra~ydysaq----dedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYSAQ----DEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCccc----CcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 346899999999 899999999999998888899999998 5899999999999863
No 32
>KOG1843|consensus
Probab=98.35 E-value=1.9e-07 Score=81.67 Aligned_cols=55 Identities=35% Similarity=0.687 Sum_probs=48.9
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecC--CCeEEEEECCeEEEeeCCcEEe
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVD--KNWYEGEHNAMIGLFPFNYVEI 117 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~--~~Ww~g~~~g~~G~~P~nyv~~ 117 (225)
.+.+.|+|+|..+ ...+|+|++||||.++.+.+ ..||.|+.++.+|+||.|||+.
T Consensus 416 ~n~a~a~ysfage----~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGE----QPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccC----CCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 4568899999999 67799999999999998765 4799999999999999999974
No 33
>KOG0609|consensus
Probab=98.31 E-value=2.4e-08 Score=90.20 Aligned_cols=61 Identities=23% Similarity=0.456 Sum_probs=49.6
Q ss_pred ceEEEEeecccCCCCCC---CCccccccCCCeEEEEEecCCCeEEEEEC-----CeEEEeeCCcEEeec
Q psy15850 59 RKYLQELHDISSRRHTD---NFTELSFKKGDIIFVRRQVDKNWYEGEHN-----AMIGLFPFNYVEIIP 119 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~---~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~-----g~~G~~P~nyv~~~~ 119 (225)
..+++|+|||++..+.. .+..|+|++|||+.|++++|.+||.++.. +..|++|+...+...
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr 282 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERR 282 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHH
Confidence 46899999999995433 23489999999999999999999999843 467999998776543
No 34
>KOG2996|consensus
Probab=98.27 E-value=6.6e-07 Score=81.56 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=90.5
Q ss_pred EeecccCCCCCCCC--ccccccCCCeEEEEEe-cCCCeEEEEE--CCeEEEeeCCcEEeecCCCCC----C---------
Q psy15850 64 ELHDISSRRHTDNF--TELSFKKGDIIFVRRQ-VDKNWYEGEH--NAMIGLFPFNYVEIIPYDKIR----T--------- 125 (225)
Q Consensus 64 al~d~~~~~~~~~~--~eLs~~~Gdii~v~~~-~~~~Ww~g~~--~g~~G~~P~nyv~~~~~~~~~----~--------- 125 (225)
++-.|.+..+++.. .-|.++.||++.++.- ....||.|+. .+..||||++-|.+.+...-+ +
T Consensus 609 ~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~Wy 688 (865)
T KOG2996|consen 609 VVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWY 688 (865)
T ss_pred hhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhh
Confidence 44455555433322 4799999999987654 4568999995 456899999999876533210 0
Q ss_pred -----------CcCCCCcCcEEEcccccCCCccccccccccceEEeccccccccc-------ccchhhhhhccchhHHH
Q psy15850 126 -----------APKKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYR-------RPVRNEIKELISEEELA 186 (225)
Q Consensus 126 -----------~~~~~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~-------f~~~~~l~e~~~~~e~~ 186 (225)
.-...+.|.+++++.-.....+.+|++..+.|+++..+.++||. |.++-|||+||+.+++-
T Consensus 689 aG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~ELVeyYq~~sLk 767 (865)
T KOG2996|consen 689 AGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVELVEYYQSHSLK 767 (865)
T ss_pred cchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHHHHHHHhccHH
Confidence 00123568899999988889999999999999888876667766 89999999999998753
No 35
>KOG2222|consensus
Probab=98.11 E-value=2.6e-07 Score=82.58 Aligned_cols=57 Identities=35% Similarity=0.605 Sum_probs=51.6
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecC
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~ 120 (225)
+.++|+.||.-. ..+||.|+++|+|.++..-+...|.|+++|.+||||+-||+.++.
T Consensus 549 krakal~df~r~----dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde 605 (848)
T KOG2222|consen 549 KRAKALHDFARE----DDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE 605 (848)
T ss_pred HHHHHHhhhhhc----cccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence 346899999888 788999999999999988889999999999999999999998864
No 36
>KOG3523|consensus
Probab=97.94 E-value=7.6e-07 Score=81.46 Aligned_cols=57 Identities=30% Similarity=0.531 Sum_probs=51.4
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE--ECCeEEEeeCCcEEeecCC
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYD 121 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~--~~g~~G~~P~nyv~~~~~~ 121 (225)
.+.+...|.+. ..+||++..+|++.|+.+..+||++|+ .+|..||||..||+.|...
T Consensus 610 Qv~~~~sy~a~----q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~ 668 (695)
T KOG3523|consen 610 QVQCVHSYKAK----QPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP 668 (695)
T ss_pred hhheeeccccC----CCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence 36788889999 788999999999999999999999999 5899999999999998654
No 37
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=97.81 E-value=9.7e-06 Score=51.00 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=35.0
Q ss_pred EcccccCCCccccccccccceEEecccccccccccchhhhhhccch
Q psy15850 137 AKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISE 182 (225)
Q Consensus 137 a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~ 182 (225)
|+|+|.+..++||+|++||+|.++.. ..++||...++.-..+++.
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~ 45 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEK-SDDGWWYGRNTGRTGLFPA 45 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEE-SSTSEEEEEETTEEEEEEG
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEe-CCCCEEEEEECCEEEEECH
Confidence 68999999999999999999999966 6788887666665555554
No 38
>KOG4792|consensus
Probab=97.64 E-value=2.9e-05 Score=63.43 Aligned_cols=60 Identities=28% Similarity=0.424 Sum_probs=49.2
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecC
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~ 120 (225)
+.+++++++-.+.. .+...|.+++||+|.|+.+.-+|-|+|+++|+.|.||..||+..+.
T Consensus 227 Pa~Arv~q~RVPnA--YDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~ 286 (293)
T KOG4792|consen 227 PAYARVIQKRVPNA--YDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV 286 (293)
T ss_pred ChheeeehhcCCCc--cChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence 44567777655441 1345899999999999999999999999999999999999998764
No 39
>KOG2528|consensus
Probab=97.63 E-value=2.9e-05 Score=69.00 Aligned_cols=59 Identities=29% Similarity=0.531 Sum_probs=50.7
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEe-cCCCeEEEE-ECCeEEEeeCCcEEeecCCCC
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQ-VDKNWYEGE-HNAMIGLFPFNYVEIIPYDKI 123 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~-~~~~Ww~g~-~~g~~G~~P~nyv~~~~~~~~ 123 (225)
.+||+|||... +..||+...||++.+... ...+||.|. ..|..|+||..||+.+.....
T Consensus 4 k~RamyDf~~E----~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~ 64 (490)
T KOG2528|consen 4 KARAMYDFQSE----GHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVA 64 (490)
T ss_pred chhhhcchhhc----ccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccc
Confidence 46899999999 788999999999998864 456999998 689999999999999875444
No 40
>KOG1451|consensus
Probab=97.60 E-value=3.7e-05 Score=70.45 Aligned_cols=54 Identities=33% Similarity=0.565 Sum_probs=47.3
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEE-EEEecCCCeEEEEECCeEEEeeCCcEEee
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIF-VRRQVDKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~-v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
.+.++|...+. ...+++|..|.++. |.....+||..|+++|++|++|+|||+.+
T Consensus 758 k~k~lyAc~a~----h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 758 RVKTLYACTAD----HHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccceeccCCC----CcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 36788888888 67799999999997 55577889999999999999999999864
No 41
>KOG4773|consensus
Probab=97.60 E-value=7.6e-06 Score=70.51 Aligned_cols=55 Identities=22% Similarity=0.449 Sum_probs=50.7
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecC
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~ 120 (225)
.+|++||... ...||.|.+||++.++.+++.+||.|...|.+||+|.+|++.++.
T Consensus 178 ~~a~~df~gn----s~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~ 232 (386)
T KOG4773|consen 178 AEASFDFPGN----SKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDD 232 (386)
T ss_pred HHhhccCCCC----ccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhcc
Confidence 4788999988 788999999999999999999999999999999999999998853
No 42
>KOG3775|consensus
Probab=97.54 E-value=4e-05 Score=66.73 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=51.3
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE--ECCeEEEeeCCcEEeecCCC
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYDK 122 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~--~~g~~G~~P~nyv~~~~~~~ 122 (225)
-|+++.|.++ ..+||-+..||-|.|-...++.|.+|. .+|+.|+||+.|+-.++...
T Consensus 265 HR~~~rFvPR----HpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e 323 (482)
T KOG3775|consen 265 HRAVFRFVPR----HPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE 323 (482)
T ss_pred hhhhhhccCC----CcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence 3799999999 899999999999999999999999998 68999999999998886543
No 43
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=97.47 E-value=6.9e-05 Score=48.14 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=36.7
Q ss_pred EEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchh
Q psy15850 135 ARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 135 ~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~ 183 (225)
++|.++|.+....+|+|++||+|.++......+||....++-..+++.+
T Consensus 2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~ 50 (55)
T PF07653_consen 2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSS 50 (55)
T ss_dssp EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGG
T ss_pred EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHH
Confidence 6899999999999999999999999933355577876666666666654
No 44
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.43 E-value=9.8e-05 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=28.8
Q ss_pred EEcccccCCCccccccccccceEEecccccccccc
Q psy15850 136 RAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRR 170 (225)
Q Consensus 136 ~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f 170 (225)
+|+|+|.+...++|+|++||.+.++.. .+.+||.
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~ 34 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEK-SDDGWWK 34 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEE-SSSSEEE
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEe-cCCCEEE
Confidence 589999999999999999999999987 4447775
No 45
>KOG3632|consensus
Probab=97.35 E-value=0.00014 Score=70.19 Aligned_cols=61 Identities=31% Similarity=0.454 Sum_probs=50.9
Q ss_pred eEEEEeecccCCCCCCC---CccccccCCCeEEEEE-ecCCCeEEEEECCeEEEeeCCcEEeecC
Q psy15850 60 KYLQELHDISSRRHTDN---FTELSFKKGDIIFVRR-QVDKNWYEGEHNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~---~~eLs~~~Gdii~v~~-~~~~~Ww~g~~~g~~G~~P~nyv~~~~~ 120 (225)
+.+.|.|||.++.++.+ ..+|.|..||||.|.. .++++++.|+++|..|++|+|+++....
T Consensus 1245 ~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p~~ 1309 (1335)
T KOG3632|consen 1245 RQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAPNA 1309 (1335)
T ss_pred hhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCCCc
Confidence 34669999999976653 3599999999999886 4567899999999999999999987643
No 46
>KOG3557|consensus
Probab=97.34 E-value=4.3e-05 Score=70.64 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=50.3
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE-ECCeEEEeeCCcEEeecCC
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEIIPYD 121 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~-~~g~~G~~P~nyv~~~~~~ 121 (225)
.+++..+|||.++ +..||+..+||++.|+.. ..+||+++ ..|+.|++|+|.+..+...
T Consensus 500 ~k~~~~~Ydf~ar----Ns~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 500 KKWVLVLYDFQAR----NSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred ceeeeeehhhhcc----cchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 3478999999999 899999999999998875 45799998 6789999999999988644
No 47
>KOG4575|consensus
Probab=97.34 E-value=0.00023 Score=65.80 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=47.9
Q ss_pred ceEEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEE--CCeEEEeeCCcEEeecC
Q psy15850 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 59 ~~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~--~g~~G~~P~nyv~~~~~ 120 (225)
++.++|+|.+.++ ..++|.|-.||+|.++.-.+..||-+.+ ....|+||+|||..++.
T Consensus 8 p~~vrA~y~w~ge----~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~ 67 (874)
T KOG4575|consen 8 PCMVRALYAWPGE----REGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDK 67 (874)
T ss_pred CceEEeeccCCCC----cccccceecccceeEEeeccceeeeeeeecccccccCcccceeeccc
Confidence 4668999999999 7889999999999999887766666654 34689999999977654
No 48
>KOG4429|consensus
Probab=97.26 E-value=0.00018 Score=60.94 Aligned_cols=53 Identities=15% Similarity=0.047 Sum_probs=49.2
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEee
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
|.|+|.|.++ ..+||...+||++.+.++...+||.|++.|..|-||+.|++.+
T Consensus 366 cdafYSfqar----qddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 366 CDAFYSFQAR----QDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred hhhhhccccc----cccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 6799999999 7889999999999999999999999999999999999998864
No 49
>KOG2199|consensus
Probab=97.23 E-value=0.00014 Score=63.96 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=39.9
Q ss_pred CcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccch
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISE 182 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~ 182 (225)
....++|+|||.+..+.||||++||+|+|++. ..-.||.+.+..-++.++.
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~-s~~~WWKG~~~~~~GlFPs 264 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDD-SDPNWWKGENHRGIGLFPS 264 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEccc-CCcchhccccCCcccccch
Confidence 44568999999999999999999999999998 6667775554444444443
No 50
>KOG3771|consensus
Probab=97.04 E-value=0.00024 Score=63.72 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=44.0
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEec-CCCeEEEEECCeEEEeeCCcEEe
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQV-DKNWYEGEHNAMIGLFPFNYVEI 117 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~-~~~Ww~g~~~g~~G~~P~nyv~~ 117 (225)
-.+.++|||.+. +.++|+|+.||+|.|+... ...||.|++.|..+-+|.+|+..
T Consensus 401 ~~v~a~~dy~a~----~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~ 455 (460)
T KOG3771|consen 401 YKVKALHDYAAQ----DTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPL 455 (460)
T ss_pred cceecccccccc----ccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceec
Confidence 348899999999 8999999999999988744 35799999888776666666643
No 51
>KOG2070|consensus
Probab=96.93 E-value=0.00073 Score=61.06 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=45.6
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchhHHH
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEELA 186 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~e~~ 186 (225)
-.+.|.|+|..-+.+||+|.+||+|+|-+. ..+|||.+.+|+.-.|++.+.+.
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~-eeGGWWEGTlng~TGWFPsnYV~ 70 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQV-EEGGWWEGTLNGRTGWFPSNYVR 70 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEe-ccCcceeccccCccCccchHHHH
Confidence 357899999999999999999999999987 66899988888888888776543
No 52
>KOG3725|consensus
Probab=96.41 E-value=0.00071 Score=56.45 Aligned_cols=55 Identities=29% Similarity=0.468 Sum_probs=47.8
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEe--cCCCeEEEEECCeEEEeeCCcEEee
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEII 118 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~--~~~~Ww~g~~~g~~G~~P~nyv~~~ 118 (225)
+.++.+|||++. ...||++-..++|.|..- .|..|.-|+.+++.|-+|..|++.+
T Consensus 318 rkArVlyDYdAa----~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 318 RKARVLYDYDAA----LSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred cceeeeeccccc----chhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 447899999999 788999999999988753 4668999999999999999998764
No 53
>KOG1118|consensus
Probab=96.39 E-value=0.0012 Score=56.29 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=42.0
Q ss_pred CcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchh
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~ 183 (225)
.+..|.|+|+|.+.++.||.|++||+|++... ++++||-+..++--.+++.+
T Consensus 305 ~~p~cralYdFepenEgEL~fkeGDlI~l~~Q-IdenWyeG~~~g~sG~FPvn 356 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEGELDFKEGDLITLTNQ-IDENWYEGEKHGESGMFPVN 356 (366)
T ss_pred cchhheeeeccCCCCCCccCcccCceeeehhh-cCcchhhheecCccCccccc
Confidence 45678999999999999999999999999987 88899866655544444443
No 54
>KOG0162|consensus
Probab=96.38 E-value=0.0033 Score=59.47 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=43.8
Q ss_pred CcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchh
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~ 183 (225)
....|.|+|+|.+++.+||+|++||+|.++.+ ...|||-+.++.-..|++.+
T Consensus 1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~e-dpSGWw~gk~~~keG~~P~~ 1101 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMRE-DPSGWWLGKLNGKEGLFPGN 1101 (1106)
T ss_pred CCcceeeeccCCCCCcccccccCCCEEEEecc-CCCcchhhccCCcccccccc
Confidence 44689999999999999999999999999987 56688877777777776653
No 55
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=96.29 E-value=0.0029 Score=39.32 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.8
Q ss_pred EEEcccccCCCccccccccccceEEeccccccccccc
Q psy15850 135 ARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRP 171 (225)
Q Consensus 135 ~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~ 171 (225)
++++++|.+....+|+|.+|+.+.++.. ...+||..
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~-~~~~w~~~ 37 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEK-SDDGWWEG 37 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEc-CCCCeEEE
Confidence 5789999999999999999999999987 45667643
No 56
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=96.28 E-value=0.0036 Score=39.39 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=36.6
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccccchh-hhhhccc
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRN-EIKELIS 181 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~-~l~e~~~ 181 (225)
..++|+++|.+....+|+|.+||.|.++... ..+||..... ....+++
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~~~~G~vP 51 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKS-DDGWWKGRLGRGKEGLFP 51 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEeCCCCEEEEc
Confidence 3578999999999999999999999999874 6677754333 3344443
No 57
>KOG0515|consensus
Probab=96.26 E-value=0.0027 Score=58.00 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=42.4
Q ss_pred CcCcEEEcccccCCCccccccccccceEEeccc---ccccccccchhhhhhccchhH
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSE---VTLQYRRPVRNEIKELISEEE 184 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~---~~~~~~f~~~~~l~e~~~~~e 184 (225)
..|.+-|+++|.++.++||+|++||.++||+.+ ..+|||-. +|.-..|+..+-
T Consensus 682 N~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~-lng~eGyVPRny 737 (752)
T KOG0515|consen 682 NKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWAR-LNGEEGYVPRNY 737 (752)
T ss_pred ccceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHh-hcCcccccchhh
Confidence 557889999999999999999999999999874 33566654 777777776643
No 58
>KOG2546|consensus
Probab=95.80 E-value=0.0016 Score=57.82 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=48.8
Q ss_pred eEEEeeCCcEEeecCCCCCCCcCCCCcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccch
Q psy15850 106 MIGLFPFNYVEIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISE 182 (225)
Q Consensus 106 ~~G~~P~nyv~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~ 182 (225)
..||+|.+|+|. ..++|+|.+..++||+|.+|.++-++.+ .++||+.+..+..-.++..
T Consensus 414 sp~w~p~syLEk-----------------Vv~iydy~~~KddeLsf~E~ailyv~kk-nddgw~EgV~~~VTglFpg 472 (483)
T KOG2546|consen 414 SPAWVPTSYLEK-----------------VVAIYDYTADKDDELSFAEGAILYVLKK-NDDGWYEGVQDGVTGLFPG 472 (483)
T ss_pred CcccccHHHHHH-----------------HHhhcccccccccccccccccEEEEEEe-cCCcchhheecCcceeccC
Confidence 367888888754 4579999999999999999999988887 7789998887777666554
No 59
>KOG2856|consensus
Probab=95.75 E-value=0.0069 Score=53.01 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=45.2
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccccchh-hhhhccchhH
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRN-EIKELISEEE 184 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~-~l~e~~~~~e 184 (225)
..++|+|||..+..+||+|+.||.++.+..+..+||..+-++ +-+.+|+-+.
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnY 467 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANY 467 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhh
Confidence 357899999999999999999999999999899999976655 7888887654
No 60
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=95.63 E-value=0.037 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=31.0
Q ss_pred cccccCCCeEEEEEecCCC-eEEE-EECCeEEEeeCCcEE
Q psy15850 79 ELSFKKGDIIFVRRQVDKN-WYEG-EHNAMIGLFPFNYVE 116 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~~~-Ww~g-~~~g~~G~~P~nyv~ 116 (225)
--.+..|+.+.++.....+ |++. ..+|..||+++.||+
T Consensus 16 i~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 16 IGQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred hEEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 3457899999999876655 9999 579999999999985
No 61
>KOG3565|consensus
Probab=94.77 E-value=0.0072 Score=57.37 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=48.0
Q ss_pred eEEEEeecccCCCCCCCCccccccCCCeEEEEEec-CCCeEEEE--ECCeEEEeeCCcEEeec
Q psy15850 60 KYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQV-DKNWYEGE--HNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 60 ~~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~-~~~Ww~g~--~~g~~G~~P~nyv~~~~ 119 (225)
..+.|+|.|.+. +.+++++..|+++.+++.+ .+||=+++ .+|..|+||.+|++...
T Consensus 579 ~~~~a~~~~~~~----s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 579 RTSKALYAFEGQ----SEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred cceecccCcCCC----CCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 457899999999 8899999999999988654 45898888 78899999999998753
No 62
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=94.55 E-value=0.054 Score=37.89 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=29.7
Q ss_pred CccccccCCCeEEEEEecCCCeEEEE-ECCeEEEeeCCcEEeec
Q psy15850 77 FTELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 77 ~~eLs~~~Gdii~v~~~~~~~Ww~g~-~~g~~G~~P~nyv~~~~ 119 (225)
.-+|.+++|+++.|+...+.+-|.++ ..|+-|+||.+++-..+
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 45899999999999999999988898 68999999999886554
No 63
>KOG0199|consensus
Probab=94.27 E-value=0.047 Score=52.18 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=39.1
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecC-CCeEEEE--ECCeEEEeeCCcEEe
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVD-KNWYEGE--HNAMIGLFPFNYVEI 117 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~-~~Ww~g~--~~g~~G~~P~nyv~~ 117 (225)
+++.||+ . ..+.|.|++||.|.|++... ..||+|. .+++.|.||.+-|..
T Consensus 379 a~~~~d~--~----ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 379 ARETYDS--I----EPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeeccc--c----CCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 4455554 3 45699999999999887544 5699996 678999999998874
No 64
>KOG1264|consensus
Probab=94.09 E-value=0.034 Score=53.47 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=39.1
Q ss_pred CcCcEEEcccccCCCccccccccccceEEeccccccccccc-chhhhhhccchh
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRP-VRNEIKELISEE 183 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~-~~~~l~e~~~~~ 183 (225)
++..++|+|+|.+..++||||.+|.+|+.+.+ ..+|||.+ --..+..|++.+
T Consensus 773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~k-eeg~wWrGdYGg~iq~wfPsn 825 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSK-EEGGWWRGDYGGRIQQWFPSN 825 (1267)
T ss_pred cchhhhhhhccccCCcccccccccceeEeeec-cCCceeecccccceeeeccHH
Confidence 45678999999999999999999999999998 45556632 222444555543
No 65
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.53 E-value=0.17 Score=32.74 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.8
Q ss_pred cccccCCCeEEEEEecCCCeEEEEEC-CeEEEeeCCcE
Q psy15850 79 ELSFKKGDIIFVRRQVDKNWYEGEHN-AMIGLFPFNYV 115 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~~~Ww~g~~~-g~~G~~P~nyv 115 (225)
--.+..|+.+.++.....+|.+.+.. |..||++..++
T Consensus 24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 34478999999998765589999965 99999987665
No 66
>KOG1702|consensus
Probab=93.11 E-value=0.059 Score=43.69 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=32.4
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccc
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRR 170 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f 170 (225)
..+.|.|+|.++++++++|.-||.|..+.. ++.||+.
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~-iddGWmy 244 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQS-IDDGWMY 244 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEe-ccCCcee
Confidence 568999999999999999999999977776 7777874
No 67
>KOG0040|consensus
Probab=92.45 E-value=0.0039 Score=62.91 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=51.4
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCC
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~ 121 (225)
+.|+|||... ++.+.+.++||++.++....-.||..+++.+.|++|..||+.+.+.
T Consensus 971 v~alyd~q~k----Sprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 971 VLALYDYQEK----SPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHhc----CHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 5699999999 8899999999999988877889999999999999999999998766
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.52 E-value=0.22 Score=40.80 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=33.4
Q ss_pred cccccCCCeEEEEEecC-CCeEEEE-ECCeEEEeeCCcEEeec
Q psy15850 79 ELSFKKGDIIFVRRQVD-KNWYEGE-HNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~-~~Ww~g~-~~g~~G~~P~nyv~~~~ 119 (225)
--++..|+.+.|+...+ .+|.+.+ .+|+.||+++.|+...+
T Consensus 47 v~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 47 VGTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 34688999999998665 5899998 57899999999986543
No 69
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=90.79 E-value=0.67 Score=29.25 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=29.2
Q ss_pred cccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcE
Q psy15850 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYV 115 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv 115 (225)
-..+.+|..+.|+.. ..+|.+.+.+|..||++.+.|
T Consensus 18 v~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 466778888888854 668999999999999987654
No 70
>KOG3812|consensus
Probab=90.77 E-value=0.12 Score=45.05 Aligned_cols=51 Identities=18% Similarity=0.436 Sum_probs=40.2
Q ss_pred EEEeecccCCCCCC---CCccccccCCCeEEEEEecCCCeEEEEE---CCeEEEeeC
Q psy15850 62 LQELHDISSRRHTD---NFTELSFKKGDIIFVRRQVDKNWYEGEH---NAMIGLFPF 112 (225)
Q Consensus 62 ~~al~d~~~~~~~~---~~~eLs~~~Gdii~v~~~~~~~Ww~g~~---~g~~G~~P~ 112 (225)
|++.-+|.+.-+.. ....++|...|.+-|..+-++.||-|++ ++..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 57777888775332 2347999999999999999999999993 445799997
No 71
>KOG3705|consensus
Probab=87.07 E-value=0.55 Score=42.03 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=38.5
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE--ECCeEEEeeCCcEEe
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEI 117 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~--~~g~~G~~P~nyv~~ 117 (225)
.++++++..++ +..|+.++.||+|-|-...=+|.-+|. ..++.|+||+--|+.
T Consensus 511 n~ivi~aH~pr----t~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPR----TNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCC----cccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 36888998888 788999999999977543222333343 356889999977765
No 72
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=86.86 E-value=0.7 Score=31.08 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCcCcEEEcccccCCCccccccccccceEEeccccc-cc-cc------ccchhhhhhcc
Q psy15850 130 LSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVT-LQ-YR------RPVRNEIKELI 180 (225)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~-~~-~~------f~~~~~l~e~~ 180 (225)
...|.|+.+.+-...+.+.|++..++.+..+..... .+ |. |+++.+|+++|
T Consensus 19 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 19 KPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp SSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred CCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence 467899999999888899999999998866654322 22 33 78999999875
No 73
>KOG4429|consensus
Probab=86.65 E-value=0.36 Score=41.37 Aligned_cols=51 Identities=14% Similarity=-0.080 Sum_probs=41.7
Q ss_pred cEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchhHH
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEEL 185 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~e~ 185 (225)
.|.+.|+|.+..+++|....|+++.+-+. ..+||||+.++.-.++..-.++
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ek-keeg~~f~rl~gd~~hf~Aa~i 415 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEK-KEEGPTFCRLLGDFEHFHAAEI 415 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCc-ccCCCceeeeccccCCCcHHHH
Confidence 57899999999999999999998866554 7789999888877776665443
No 74
>KOG3655|consensus
Probab=84.14 E-value=0.48 Score=43.07 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=35.0
Q ss_pred cCcEEEcccccCCCccccccccccceEEecccccccccccc
Q psy15850 132 EGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPV 172 (225)
Q Consensus 132 ~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~ 172 (225)
...+.|+|+|.+.++.+|+|-.++.|++|+. +.+|||-+.
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~-vdegww~g~ 466 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQ-VDEGWWTGQ 466 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccc-cCCcccccc
Confidence 3467899999999999999999999999987 889999543
No 75
>KOG2222|consensus
Probab=83.89 E-value=0.31 Score=44.51 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred CcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccchh
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEE 183 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~~ 183 (225)
..+.|+.+|...+++||-|+++|+|+++.. ..++.|-+.+|+|..|++..
T Consensus 549 krakal~df~r~dddelgfrkndiitiise-kdehcwvgelnglrgwfpak 598 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISE-KDEHCWVGELNGLRGWFPAK 598 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeec-CCcceeeeccccccccchHH
Confidence 357889999999999999999999999987 67888888888888888753
No 76
>KOG3875|consensus
Probab=83.14 E-value=0.22 Score=42.89 Aligned_cols=52 Identities=29% Similarity=0.264 Sum_probs=38.3
Q ss_pred CcEEEcccccCCCccccccccccceEEeccccc-----ccccccch-hhhhhccchhH
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVT-----LQYRRPVR-NEIKELISEEE 184 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~-----~~~~f~~~-~~l~e~~~~~e 184 (225)
..|.|.|+|.+.++.||+|++||++.++.++.. +||.-.++ +.-..+++-+.
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NY 326 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINY 326 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhh
Confidence 457899999999999999999999988876533 45655554 44455555544
No 77
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=82.56 E-value=1.9 Score=39.71 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.0
Q ss_pred cccccCCCeEEEEEecCCCeEEEEE-CCeEEEeeCCcEEe
Q psy15850 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEI 117 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~~~Ww~g~~-~g~~G~~P~nyv~~ 117 (225)
-=++..|+.|.|+...+.+|++.+. +|+.||+-+.|+..
T Consensus 102 Igsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 102 ITSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 4568899999998655678999997 59999999999875
No 78
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=81.05 E-value=1.3 Score=30.19 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=40.0
Q ss_pred cCcEEEcccccCCCccccccccccceEEeccccc--cccc------ccchhhhhhccchh
Q psy15850 132 EGQARAKFNFVAQTHLELSLVKESPHKYVDSEVT--LQYR------RPVRNEIKELISEE 183 (225)
Q Consensus 132 ~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~--~~~~------f~~~~~l~e~~~~~ 183 (225)
.|.|+.+.+....+.+.|+++.+..+.++..... ++|. |+++.+|+++|...
T Consensus 22 ~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~~ 81 (84)
T smart00252 22 DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQKN 81 (84)
T ss_pred CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhhC
Confidence 6889999998878888999999888876654322 2333 78899999998764
No 79
>KOG4773|consensus
Probab=80.74 E-value=0.29 Score=42.79 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=65.2
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEE---ECCeEEEeeCCcEEeecCCCC-------CCCc---
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE---HNAMIGLFPFNYVEIIPYDKI-------RTAP--- 127 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~---~~g~~G~~P~nyv~~~~~~~~-------~~~~--- 127 (225)
++...|||.++ ..+++.-..... ..|.... .-|..|++|..||.+.+.... .+.+
T Consensus 91 pA~v~fdfkqe----~Ae~r~~~ln~y--------~e~LlslPi~~l~~p~l~~fffvsp~D~~dVpeai~r~~Prt~~~ 158 (386)
T KOG4773|consen 91 PAIVYFDFKQE----IAEERIPALNAY--------CEWLLSLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRLRPRTRKW 158 (386)
T ss_pred cceeEechhhh----hhhhhhHHHHHH--------HHHHHhcchhhcCCCCceeeeeeccchHhhhhHHHHhcCchhhhc
Confidence 35667777776 344432222111 3344433 235578899999988763211 0110
Q ss_pred -------CCC-----CcCcEEEcccccCCCccccccccccceEEecccccccccccchhhhhhccch
Q psy15850 128 -------KKL-----SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISE 182 (225)
Q Consensus 128 -------~~~-----~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l~e~~~~ 182 (225)
..+ -...+.+.++|......||.|..|+++.++.. .+.+||++.-..+..||+-
T Consensus 159 ks~~~skasni~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r-~ek~W~~gk~R~~~g~yp~ 224 (386)
T KOG4773|consen 159 KSDGVSKASNIVLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSR-DEKYWLLGKVRGLTGYYPD 224 (386)
T ss_pred cccccCccccccchhhhHHHHhhccCCCCccceeeeehhhHHHHHhh-cccceeeeeeccccccccH
Confidence 000 11245678888888899999999999988887 7778886655555555543
No 80
>KOG1843|consensus
Probab=80.51 E-value=1 Score=40.31 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=38.3
Q ss_pred cEEEcccccCCCccccccccccceEEeccc-ccccccccchhhhhhccc
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDSE-VTLQYRRPVRNEIKELIS 181 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~~-~~~~~~f~~~~~l~e~~~ 181 (225)
.+.++|+|..+....++|.+||+|+++.+- ....||....+......+
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifP 466 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFP 466 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccc
Confidence 789999999999999999999999988773 337888766665544443
No 81
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=80.06 E-value=1.9 Score=29.86 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCcCcEEEcccccCCCccccccccccceEEeccc-ccccc-------cccchhhhhhccchhHH
Q psy15850 130 LSEGQARAKFNFVAQTHLELSLVKESPHKYVDSE-VTLQY-------RRPVRNEIKELISEEEL 185 (225)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~-~~~~~-------~f~~~~~l~e~~~~~e~ 185 (225)
...|.|+.+.+....+.+.|++..++.+.++... ..++| .|+++.+|+++|....+
T Consensus 19 ~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~~~ 82 (94)
T cd00173 19 KPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKNPL 82 (94)
T ss_pred CCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhCcc
Confidence 3568899999988888899999999888766543 22333 37899999999987653
No 82
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=79.98 E-value=2.4 Score=27.23 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.0
Q ss_pred cccCCCeEEEEEecCCCeEEEEE
Q psy15850 81 SFKKGDIIFVRRQVDKNWYEGEH 103 (225)
Q Consensus 81 s~~~Gdii~v~~~~~~~Ww~g~~ 103 (225)
.|++|+.|.+....++.||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 48899999999877889999984
No 83
>KOG4278|consensus
Probab=79.62 E-value=1.3 Score=42.28 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.9
Q ss_pred CcEEEcccccCCCccccccccccceEEeccc
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSE 163 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~ 163 (225)
..|+|+|||.+-++..||+.+|+.+.|+.-+
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN 121 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYN 121 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeec
Confidence 4699999999999999999999999888643
No 84
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=79.03 E-value=3.3 Score=33.92 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred cccccCCCeEEEEEecCC-CeEEEE-ECCeEEEeeCCcEEeec
Q psy15850 79 ELSFKKGDIIFVRRQVDK-NWYEGE-HNAMIGLFPFNYVEIIP 119 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~~~-~Ww~g~-~~g~~G~~P~nyv~~~~ 119 (225)
-=++++|+.+.|+..... +|...+ ..|+.|||++.++..-+
T Consensus 47 ~~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 47 VGSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred eeEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccc
Confidence 347899999999987665 799998 47899999998876543
No 85
>KOG4637|consensus
Probab=77.17 E-value=2.1 Score=37.92 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=43.3
Q ss_pred CcCcEEEcccccCCCccccccccccceEEecc---ccccccc----ccchhhhhhccchhHHH
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDS---EVTLQYR----RPVRNEIKELISEEELA 186 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~---~~~~~~~----f~~~~~l~e~~~~~e~~ 186 (225)
+.|.|+++..-+-++++.|++++|.-++.+.. +.+-|+. |.+..+|++||+..+++
T Consensus 43 PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn~yr~~SL~ 105 (464)
T KOG4637|consen 43 PDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELINHYRNESLA 105 (464)
T ss_pred CCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHHHHhhhHHH
Confidence 56889998888889999999999987655543 3444444 67889999999888765
No 86
>KOG4384|consensus
Probab=73.20 E-value=1.9 Score=37.93 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=48.0
Q ss_pred EEEeecccCCCCCCCCccccccCCCeEEEEEecCCCeEEEEECCeEEEeeCCcEEeecCC
Q psy15850 62 LQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121 (225)
Q Consensus 62 ~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~~~~Ww~g~~~g~~G~~P~nyv~~~~~~ 121 (225)
+++.-+|.+.. ...++|.+++||+|.++.+...+-|.|-++++.|-|+.-||..+...
T Consensus 139 ~~~~t~~tp~p--~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 139 ARVHTDFTPSP--YDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred ccccccCCCCc--ccccchhhcccchhhccccCccccccccccCcccccccceecccccc
Confidence 45666666652 14679999999999999999889999999999999999999987644
No 87
>KOG3771|consensus
Probab=71.21 E-value=3.3 Score=37.74 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=30.3
Q ss_pred CcEEEcccccCCCccccccccccceEEeccccccccc
Q psy15850 133 GQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYR 169 (225)
Q Consensus 133 ~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~ 169 (225)
....++++|.+...++|+|+.|+.|.++.-.+.+.||
T Consensus 401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~ 437 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQD 437 (460)
T ss_pred cceeccccccccccccccccCCCEEEEecCCCccchh
Confidence 3578999999999999999999999998754444444
No 88
>KOG3523|consensus
Probab=70.82 E-value=4.3 Score=38.34 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=41.8
Q ss_pred cEEEcccccCCCccccccccccceEEecccccccccc--cchhhhhhccchhH
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRR--PVRNEIKELISEEE 184 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f--~~~~~l~e~~~~~e 184 (225)
.+.+..+|.+...++|+++.+|++.|+++ ..+||.+ .+..+.+.|++.+-
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k-~~DGWl~GeRl~Dge~GWFP~~~ 661 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQK-TPDGWLEGERLRDGERGWFPSSY 661 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhc-CCCccccccccccCccCcchHHH
Confidence 46788899999999999999999999998 6788886 45677888887743
No 89
>KOG0197|consensus
Probab=68.37 E-value=3.4 Score=37.99 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=39.6
Q ss_pred cCcEEEcccccCCCccccccccccceEEecccccccccc-cch-hhhhhccchhHHHH
Q psy15850 132 EGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRR-PVR-NEIKELISEEELAR 187 (225)
Q Consensus 132 ~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f-~~~-~~l~e~~~~~e~~~ 187 (225)
...++|+|+|.+....+|+|.+|+.+..+....+..||+ ..+ ..-.+|++.+-+++
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~ 68 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR 68 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence 346899999999999999999999965555556677775 222 33334566555554
No 90
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=66.83 E-value=7.1 Score=26.61 Aligned_cols=24 Identities=42% Similarity=0.823 Sum_probs=18.9
Q ss_pred cccccCCCeEEEEEec------CCCeEEEE
Q psy15850 79 ELSFKKGDIIFVRRQV------DKNWYEGE 102 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~------~~~Ww~g~ 102 (225)
-|+++.||.+.|-... +..||-|.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 4789999999776533 56899998
No 91
>KOG0790|consensus
Probab=63.23 E-value=4.8 Score=36.74 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=42.2
Q ss_pred CcCcEEEcccccCCCccccccccccceEEeccccccccc-------ccchhhhhhccchh
Q psy15850 131 SEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYR-------RPVRNEIKELISEE 183 (225)
Q Consensus 131 ~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~-------f~~~~~l~e~~~~~ 183 (225)
..+.++++++.+.++++.++++.|+.|+++.....+++. |..+.+|++||-+.
T Consensus 25 ~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyyme~ 84 (600)
T KOG0790|consen 25 VDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYMEH 84 (600)
T ss_pred cccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHHhh
Confidence 457799999999999999999999999888763333332 67789999988664
No 92
>KOG3557|consensus
Probab=53.41 E-value=5.5 Score=37.86 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=27.2
Q ss_pred cEEEcccccCCCccccccccccceEEecc
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDS 162 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~ 162 (225)
.+.+.|+|.+.+..||++.+|++..++++
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d 530 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDD 530 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhc
Confidence 67899999999999999999999999975
No 93
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=50.25 E-value=51 Score=20.96 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=23.2
Q ss_pred cccccCCCeEEEEEec-CCCeEEEEECCeEEEeeC
Q psy15850 79 ELSFKKGDIIFVRRQV-DKNWYEGEHNAMIGLFPF 112 (225)
Q Consensus 79 eLs~~~Gdii~v~~~~-~~~Ww~g~~~g~~G~~P~ 112 (225)
+-.+..|.-|.|+... |..|...+...-.||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 5678889999887654 557989998888999874
No 94
>KOG0609|consensus
Probab=46.96 E-value=21 Score=33.32 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=41.6
Q ss_pred cEEEcccccCCCc-------cccccccccceEEecccccccccc----cc-hhhhhhccchhHHHHHHHHHHHH
Q psy15850 134 QARAKFNFVAQTH-------LELSLVKESPHKYVDSEVTLQYRR----PV-RNEIKELISEEELARRQAEAMRR 195 (225)
Q Consensus 134 ~~~a~~~~~~~~~-------~els~~~g~~v~~~~~~~~~~~~f----~~-~~~l~e~~~~~e~~~~~~~~l~~ 195 (225)
.+.|+++|++..+ ..|+|.+||++.++.. .+..||- +. -..+...++..++-.+..-.++.
T Consensus 216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~q-dD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~ 288 (542)
T KOG0609|consen 216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQ-DDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRR 288 (542)
T ss_pred eehhhcCcCcccCCcccchhcCCcccccceeeeccC-CCcchhhhhcccCccccccccccCHHHHHHHHHHHhh
Confidence 4578999987644 4589999999999998 4445551 11 44667777777766666555444
No 95
>KOG3725|consensus
Probab=46.56 E-value=16 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=31.2
Q ss_pred cCcEEEcccccCCCccccccccccceEEeccc-ccccccc
Q psy15850 132 EGQARAKFNFVAQTHLELSLVKESPHKYVDSE-VTLQYRR 170 (225)
Q Consensus 132 ~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~-~~~~~~f 170 (225)
...+.++|+|.+....||++...++|+|+..- -+..|+-
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlm 356 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLM 356 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhh
Confidence 34688999999999999999999999999762 2234553
No 96
>KOG2528|consensus
Probab=44.58 E-value=11 Score=34.35 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=34.2
Q ss_pred cEEEcccccCCCccccccccccceEEeccccccccccc
Q psy15850 134 QARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRP 171 (225)
Q Consensus 134 ~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~ 171 (225)
..+++|+|.+.+..|+++..|+++.+....+.+||+.+
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg 41 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEG 41 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccC
Confidence 46789999999999999999999999999899999953
No 97
>KOG0199|consensus
Probab=43.95 E-value=16 Score=35.69 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=35.9
Q ss_pred EEEcccccCCCccccccccccceEEecccccccccc--cchhhhhhccchhH
Q psy15850 135 ARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRR--PVRNEIKELISEEE 184 (225)
Q Consensus 135 ~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f--~~~~~l~e~~~~~e 184 (225)
+.|+..+++-..+.|-+++||.|+|++....+.||| +.+|.-+..++.+.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsv 428 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSV 428 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcce
Confidence 345555555566679999999999998866577887 46777776666543
No 98
>KOG4637|consensus
Probab=40.73 E-value=26 Score=31.36 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCCCcCcEEEcccccCCCccccccccccceEEecc-cccccccc-------cchhhhhhccchhHHH
Q psy15850 128 KKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDS-EVTLQYRR-------PVRNEIKELISEEELA 186 (225)
Q Consensus 128 ~~~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~-~~~~~~~f-------~~~~~l~e~~~~~e~~ 186 (225)
...+.|.|+++. -+..+.+.+|+-.|..|++-.. ....||.| .++.+||.+|...++.
T Consensus 349 rg~~dGtFLIR~-ss~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe 414 (464)
T KOG4637|consen 349 RGKPDGTFLIRE-SSKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLE 414 (464)
T ss_pred cCCCCCeEEEee-ccCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHH
Confidence 345778899888 3455668899999998865433 34578886 5688888888887654
No 99
>KOG3580|consensus
Probab=39.40 E-value=47 Score=31.80 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=36.5
Q ss_pred EEEEeecccCCCCCCCCccccccCCCeEEEEEec----CCCeEEEEECC-----eEEEeeC
Q psy15850 61 YLQELHDISSRRHTDNFTELSFKKGDIIFVRRQV----DKNWYEGEHNA-----MIGLFPF 112 (225)
Q Consensus 61 ~~~al~d~~~~~~~~~~~eLs~~~Gdii~v~~~~----~~~Ww~g~~~g-----~~G~~P~ 112 (225)
|.+..|.|... .+..|.|.+|+++.|++.. ..+|.-.+.+. ..|++|.
T Consensus 506 yIRtHFE~Eke----~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 506 YIRTHFECEKE----TPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred EEeeeeeecCC----CCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 56888999988 7889999999999988643 23566666433 3799996
No 100
>KOG4575|consensus
Probab=38.17 E-value=26 Score=33.55 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=33.3
Q ss_pred cCcEEEcccccCCCccccccccccceEEecccccccccccchhhh
Q psy15850 132 EGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEI 176 (225)
Q Consensus 132 ~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~~~~l 176 (225)
.+..+|+|-...+.+..|.|.+||++++...+...+|....+|.-
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~ 52 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKD 52 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeeccc
Confidence 356789999999999999999999999998743333333444433
No 101
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=35.83 E-value=47 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q psy15850 195 RIYQEERRRKYLQELHDISSR 215 (225)
Q Consensus 195 ~~~~~~~~~~~lq~l~D~~~~ 215 (225)
..+.++..+|+=+.|+||+.+
T Consensus 23 LEeEV~~LrKINrdLfdFSt~ 43 (48)
T PF14077_consen 23 LEEEVRTLRKINRDLFDFSTR 43 (48)
T ss_pred HHHHHHHHHHHhHHHHhhhhh
Confidence 445566788999999999774
No 102
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=33.38 E-value=1e+02 Score=20.40 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=22.0
Q ss_pred ccCCCeEE--EEEecCCCeEEEEECCeEEEeeC
Q psy15850 82 FKKGDIIF--VRRQVDKNWYEGEHNAMIGLFPF 112 (225)
Q Consensus 82 ~~~Gdii~--v~~~~~~~Ww~g~~~g~~G~~P~ 112 (225)
++.|+++. |..-.+.|.|.--..+..|++|.
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~ 33 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLF 33 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEH
Confidence 46789986 66666777774434578999984
No 103
>KOG3565|consensus
Probab=31.66 E-value=26 Score=33.79 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=43.2
Q ss_pred CCcCcEEEcccccCCCccccccccccceEEecccccccccccc--hhhhhhccch
Q psy15850 130 LSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPV--RNEIKELISE 182 (225)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~els~~~g~~v~~~~~~~~~~~~f~~--~~~l~e~~~~ 182 (225)
+..+.+.|.|.|.+.++.++++..|+++.+++...+.||-..- .+....+++.
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Pt 630 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPT 630 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCc
Confidence 3556799999999999999999999999999988888888654 5555555554
No 104
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=30.11 E-value=55 Score=21.42 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=8.3
Q ss_pred ccCCCeEEEEEecC
Q psy15850 82 FKKGDIIFVRRQVD 95 (225)
Q Consensus 82 ~~~Gdii~v~~~~~ 95 (225)
|++|+.+.|....+
T Consensus 1 F~~G~~VEV~s~e~ 14 (68)
T PF05641_consen 1 FKKGDEVEVSSDED 14 (68)
T ss_dssp --TT-EEEEEE-SB
T ss_pred CCCCCEEEEEEcCC
Confidence 78999999987653
No 105
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=29.16 E-value=94 Score=19.01 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=17.8
Q ss_pred cccCCCeEEEEEecCCCeEEEEE
Q psy15850 81 SFKKGDIIFVRRQVDKNWYEGEH 103 (225)
Q Consensus 81 s~~~Gdii~v~~~~~~~Ww~g~~ 103 (225)
.++.|+.+.+.- .+..|++|+.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEE
Confidence 478898888777 7888999984
No 106
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=29.04 E-value=93 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=22.2
Q ss_pred ccCCCeEE--EEEecCCCeEEEEE-CCeEEEeeCCcE
Q psy15850 82 FKKGDIIF--VRRQVDKNWYEGEH-NAMIGLFPFNYV 115 (225)
Q Consensus 82 ~~~Gdii~--v~~~~~~~Ww~g~~-~g~~G~~P~nyv 115 (225)
+++||++. |+...+. .|.... .+..|++|.+-+
T Consensus 4 p~~GdiV~g~V~~i~~~-g~~v~i~~~~~G~l~~se~ 39 (86)
T cd05789 4 PEVGDVVIGRVTEVGFK-RWKVDINSPYDAVLPLSEV 39 (86)
T ss_pred CCCCCEEEEEEEEECCC-EEEEECCCCeEEEEEHHHc
Confidence 46899985 6665554 455564 468999997544
No 107
>KOG1314|consensus
Probab=27.95 E-value=43 Score=29.81 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCccccccCCCeEEEEEecCCCeEEEEE-------CC----eEEEeeCCc-EEee
Q psy15850 76 NFTELSFKKGDIIFVRRQVDKNWYEGEH-------NA----MIGLFPFNY-VEII 118 (225)
Q Consensus 76 ~~~eLs~~~Gdii~v~~~~~~~Ww~g~~-------~g----~~G~~P~ny-v~~~ 118 (225)
++.-|++++||.|.+..- -.+|..|+. .+ -+||||.+. ++..
T Consensus 330 ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~ 383 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKC 383 (414)
T ss_pred CCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhccccccccccccc
Confidence 344799999999977754 567888841 11 379999988 4443
No 108
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=27.82 E-value=88 Score=20.21 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=22.6
Q ss_pred ccCCCeEE--EEEecCCCeEEEEECCeEEEeeCCcE
Q psy15850 82 FKKGDIIF--VRRQVDKNWYEGEHNAMIGLFPFNYV 115 (225)
Q Consensus 82 ~~~Gdii~--v~~~~~~~Ww~g~~~g~~G~~P~nyv 115 (225)
++.|+++. |.+-.+.+++.--..+..|++|.+.+
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l 37 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISEL 37 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehh
Confidence 57889986 55555555543333488999997554
No 109
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=22.63 E-value=1.5e+02 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=23.4
Q ss_pred cccCCCeEE--EEEecCCCeEEEEE-C-CeEEEeeCCcEE
Q psy15850 81 SFKKGDIIF--VRRQVDKNWYEGEH-N-AMIGLFPFNYVE 116 (225)
Q Consensus 81 s~~~Gdii~--v~~~~~~~Ww~g~~-~-g~~G~~P~nyv~ 116 (225)
.++.|+++. |....+.+.| ... + +..|++|.+.+.
T Consensus 14 ~~~~G~iv~G~V~~i~~~g~~-V~i~~~~~~g~lp~~e~~ 52 (390)
T PRK06676 14 EVEVGDVVTGEVLKVEDKQVF-VNIEGYKVEGVIPISELS 52 (390)
T ss_pred cccCCCEEEEEEEEEECCeEE-EEEecCCcEEEEEHHHhc
Confidence 478899986 5555554444 444 3 678999976653
No 110
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=22.28 E-value=95 Score=29.42 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=29.1
Q ss_pred CCCeEEEEEe-----cCCCeEEEE-ECCeEEEeeCCcEEeecC
Q psy15850 84 KGDIIFVRRQ-----VDKNWYEGE-HNAMIGLFPFNYVEIIPY 120 (225)
Q Consensus 84 ~Gdii~v~~~-----~~~~Ww~g~-~~g~~G~~P~nyv~~~~~ 120 (225)
=|+++.|.++ .+-+|.+.. .+|..||+-..|+++++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKS 416 (549)
T ss_pred cCceEEEcccccccccCcceEEEEecCCccceeeeeeeeeccc
Confidence 3788877653 345899988 589999999999998764
No 111
>KOG0790|consensus
Probab=21.47 E-value=90 Score=28.87 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=42.8
Q ss_pred CCcCcEEEcccccCCCcccccccccc---------ceEEecc-------cccccccccchhhhhhccchhHHHH
Q psy15850 130 LSEGQARAKFNFVAQTHLELSLVKES---------PHKYVDS-------EVTLQYRRPVRNEIKELISEEELAR 187 (225)
Q Consensus 130 ~~~~~~~a~~~~~~~~~~els~~~g~---------~v~~~~~-------~~~~~~~f~~~~~l~e~~~~~e~~~ 187 (225)
...+.|+++.+.+.++++-||++..| .|+++-. ++.++=.|.++-+|+++|.++-...
T Consensus 130 gk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~sltdLidhykknpmvE 203 (600)
T KOG0790|consen 130 GKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFDSLTDLVEHYKKNPMVE 203 (600)
T ss_pred CCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccchHHHHHHHhccCchhh
Confidence 35578999999999999999999866 3444321 2445555999999999998875543
No 112
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=21.01 E-value=2e+02 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=23.6
Q ss_pred cccCCCeEE--EEEecCCCeEEEEEC-CeEEEeeCCcE
Q psy15850 81 SFKKGDIIF--VRRQVDKNWYEGEHN-AMIGLFPFNYV 115 (225)
Q Consensus 81 s~~~Gdii~--v~~~~~~~Ww~g~~~-g~~G~~P~nyv 115 (225)
.|+.||+|. |....+.+.|. ... +..|++|..-+
T Consensus 32 ~~~~GdiV~G~V~~v~~~gv~V-dIg~k~eG~Ip~~El 68 (486)
T PRK07899 32 YFNDGDIVEGTVVKVDRDEVLL-DIGYKTEGVIPSREL 68 (486)
T ss_pred cCCCCCEEEEEEEEEECCcEEE-EECCCcEEEEEHHHh
Confidence 489999996 66665666554 444 56899997544
No 113
>KOG0708|consensus
Probab=20.41 E-value=21 Score=31.73 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=35.9
Q ss_pred cceEEEEeecccCCCCCC-CCccccccCCCeEEEEEecCCCeEEEEE
Q psy15850 58 RRKYLQELHDISSRRHTD-NFTELSFKKGDIIFVRRQVDKNWYEGEH 103 (225)
Q Consensus 58 ~~~~~~al~d~~~~~~~~-~~~eLs~~~Gdii~v~~~~~~~Ww~g~~ 103 (225)
.-.++.+++||+...... -...++|..|+++.++...+..||.++.
T Consensus 65 ~~~~v~~~~d~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~ 111 (359)
T KOG0708|consen 65 RCLYVDALFDYDLDRGSPGYSRAQSFLYGQILHLISRSDDEWWQARH 111 (359)
T ss_pred ceeEeeccccccccCCCCCcchhhhhhhhhhhhccccccHHHHHhhc
Confidence 345789999998875321 2237889999999999998999999983
Done!