RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15850
(225 letters)
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 83.4 bits (207), Expect = 2e-21
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+L F KGD+I +RRQ+D+NWY+GE N + G+FP + VE+I
Sbjct: 23 DLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVIS 63
Score = 26.0 bits (58), Expect = 2.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+A+A N+ + +L K
Sbjct: 9 RAKALCNYRGKNPGDLKFNK 28
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 82.7 bits (205), Expect = 3e-21
Identities = 20/41 (48%), Positives = 33/41 (80%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL +KGDI+++ +Q+D+NWYEGEH+ +G+FP Y+E++
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63
Score = 27.2 bits (61), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 131 SEG-QARAKFNFVAQTHLELSLVK 153
S G ARAKF+F AQT EL L K
Sbjct: 5 SSGRPARAKFDFKAQTLKELPLQK 28
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 82.3 bits (204), Expect = 5e-21
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL FK+GDII + Q+D+NWYEG + G FP NYVEI+
Sbjct: 23 ELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILV 63
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 82.3 bits (204), Expect = 5e-21
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL F++GD+I + Q+D+NWYEG + G FP +YV+++
Sbjct: 29 ELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69
Score = 25.3 bits (56), Expect = 5.6
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 129 KLSEGQARAKFNFVAQTHLELSLVK 153
L + +A ++F + EL +
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFRE 34
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 81.5 bits (202), Expect = 7e-21
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
EL+ +KGDI+++ ++VDKNW EGEH+ +G+FP NYVE++P +
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE 59
Score = 25.6 bits (57), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
AR KF+F AQ+ EL+L K
Sbjct: 3 AARLKFDFQAQSPKELTLQK 22
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 80.4 bits (199), Expect = 2e-20
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
ELSFKKG + + ++ +W+EG HN + GL P Y+ +
Sbjct: 25 ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS 67
Score = 29.2 bits (66), Expect = 0.19
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+A AKF++V +T ELS K
Sbjct: 11 EAIAKFDYVGRTARELSFKK 30
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 80.1 bits (198), Expect = 4e-20
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF++GD++ + + +W+ GEHN M GL P Y+ +
Sbjct: 25 QELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPA 66
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 125 TAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ +A A F + +T ELS +
Sbjct: 3 SGSSGEGVVEAVACFAYTGRTAQELSFRR 31
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 79.6 bits (197), Expect = 5e-20
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+
Sbjct: 34 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74
Score = 25.7 bits (57), Expect = 4.0
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 124 RTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+++ +A A F+F + LEL+
Sbjct: 10 HHHMDRMAAPRAEALFDFTGNSKLELNFKA 39
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 79.1 bits (196), Expect = 6e-20
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+
Sbjct: 20 ELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
Score = 27.5 bits (62), Expect = 0.60
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 130 LSEGQARAKFNFVAQTHLELSLVK 153
+ +A A F+F + LEL+
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKA 25
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 78.9 bits (195), Expect = 6e-20
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
E++ KKGDI+ + +K+W++ E N G P YV+ + + L + Q ++
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKS 63
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 79.2 bits (196), Expect = 7e-20
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL FK+GDII + Q+D+NWYEG + G FP NYVE+I
Sbjct: 19 ELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV 59
Score = 24.5 bits (54), Expect = 9.8
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
R ++F + EL +
Sbjct: 5 CCRGLYDFEPENQGELGFKE 24
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 78.8 bits (195), Expect = 7e-20
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEI 117
ELSFKKG + + + ++W+EG HN + GL P Y+ +
Sbjct: 22 ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
Score = 26.0 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
S A AKF++V ++ ELS K
Sbjct: 5 SPEFAIAKFDYVGRSARELSFKK 27
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 78.4 bits (194), Expect = 1e-19
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL F++GDII++ D NW++G GL P NYV
Sbjct: 23 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 78.5 bits (194), Expect = 2e-19
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPK 128
EL+ +KGDI+ + + ++ W+ G N G FP YVE +P + TA K
Sbjct: 23 ELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATK 72
Score = 25.8 bits (57), Expect = 3.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+A ++F A+ EL+L K
Sbjct: 9 LCKALYSFQARQDDELNLEK 28
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 77.7 bits (192), Expect = 3e-19
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
ELSFK+GDI+ V + D+NWY+ E N G P NY+E+ P+
Sbjct: 25 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHP 68
Score = 26.9 bits (60), Expect = 1.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 125 TAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ + +A AK++F A ELS +
Sbjct: 2 SRRASVGSMEAIAKYDFKATADDELSFKR 30
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 77.3 bits (191), Expect = 3e-19
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF KGD+I V R + W+EG HN G FP NYV I
Sbjct: 22 ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
Score = 25.7 bits (57), Expect = 3.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
RAKFNF ELS K
Sbjct: 8 VVRAKFNFQQTNEDELSFSK 27
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 77.9 bits (192), Expect = 3e-19
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEG 133
T L+ + GDI+ V R +EGE N GLFPF +V+I S G
Sbjct: 33 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDENESGPSSG 88
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 76.6 bits (189), Expect = 5e-19
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 18 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 59
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 76.6 bits (189), Expect = 8e-19
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL F+K DII + Q D++ + GE N + G FP +VE++
Sbjct: 22 DELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLD 63
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 75.7 bits (187), Expect = 1e-18
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+L F++GDII V +V++ W EGE +G+FP +VE
Sbjct: 21 DLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 79.6 bits (196), Expect = 1e-18
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEG-QARA 137
E++ GD++ V + + W+ + A G P +++E + P+ G A
Sbjct: 27 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVA 86
Query: 138 KFNFVAQTHLELSLVK 153
+ A E+SL++
Sbjct: 87 IKAYTAVEGDEVSLLE 102
Score = 57.7 bits (139), Expect = 1e-10
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEG 133
E+S +G+ + V ++ W+ + + G FP Y++ + A +++ G
Sbjct: 93 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG-QDVSQAQRQIKRG 150
Score = 26.9 bits (59), Expect = 4.1
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 124 RTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+P+ + RA ++ + E++L
Sbjct: 3 LGSPEFIILQTYRAIADYEKTSGSEMALST 32
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 75.3 bits (186), Expect = 2e-18
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
ELSF KGD+I V R + W+EG HN G FP NYV I
Sbjct: 20 ELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 25.7 bits (57), Expect = 3.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
RAKFNF ELS K
Sbjct: 6 VVRAKFNFQQTNEDELSFSK 25
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 74.7 bits (184), Expect = 4e-18
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELS KGDII+V R + W+EG N G FP NYV I
Sbjct: 26 ELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK 66
Score = 30.0 bits (68), Expect = 0.13
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 124 RTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ + +A+FNF ELS+ K
Sbjct: 2 SSGSSGSHQLIVKARFNFKQTNEDELSVCK 31
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 75.2 bits (185), Expect = 4e-18
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPK 128
EL+FK G+II V D NW++GE++ IGLFP N+V + A
Sbjct: 33 ELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAV 82
Score = 25.9 bits (57), Expect = 3.9
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 124 RTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ RA ++F A EL+
Sbjct: 9 EIQLNNKVARKVRALYDFEAVEDNELTFKH 38
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 74.2 bits (183), Expect = 5e-18
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHN--AMIGLFPFNYVEIIP 119
E+SF+KG+ I + RQVD+NWYEG + G+FP YV++I
Sbjct: 22 EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
Score = 29.5 bits (67), Expect = 0.16
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
G+A AKFNF T +E+S K
Sbjct: 5 FTGEAIAKFNFNGDTQVEMSFRK 27
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 74.1 bits (183), Expect = 5e-18
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL G+I+FV ++ + NW N GL P NY+E +
Sbjct: 23 ELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 74.2 bits (183), Expect = 5e-18
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHN--AMIGLFPFNYVEIIP 119
D E+SF+KG+ I + RQVD+NWYEG + G+FP YV++I
Sbjct: 19 DTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65
Score = 29.5 bits (67), Expect = 0.17
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
S G+A AKFNF T +E+S K
Sbjct: 6 SGGEAIAKFNFNGDTQVEMSFRK 28
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 74.3 bits (183), Expect = 5e-18
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
T L+ + G+++ V + +EGE N G FPF +V ++
Sbjct: 23 TALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD 64
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 74.4 bits (183), Expect = 1e-17
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF KG +I V + D +W++GE N + GLFP NYV++
Sbjct: 50 ELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTT 90
Score = 51.3 bits (123), Expect = 5e-09
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 104 NAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ G FP ++V+++ R P Q A +++ A ELS K
Sbjct: 6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSK 55
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 73.0 bits (180), Expect = 1e-17
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
N EL K GDII V +V++ W+EG N G+FP N+++ +
Sbjct: 19 QNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 73.6 bits (181), Expect = 2e-17
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIPYDKIRTAPKK 129
ELSF+KG+ I + R+V++NWYEG G+FP +YV++ ++R
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDS 85
Score = 30.9 bits (70), Expect = 0.087
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 126 APKKLSEGQARAKFNFVAQTHLELSLVK 153
+ L G+A A++ F +ELS K
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRK 38
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 73.2 bits (180), Expect = 2e-17
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF++G II+V ++ D WYEG N + GLFP NYVE I
Sbjct: 33 ELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIS 73
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 72.8 bits (179), Expect = 2e-17
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
L+F K DII V Q +NW+ GE + G FP +YV+IIP
Sbjct: 26 HLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIP 65
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 72.2 bits (178), Expect = 2e-17
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
EL+FK+GD+I + + D NW+EG+ N G+FP NYV PY+
Sbjct: 18 ELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC--PYN 58
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 72.8 bits (179), Expect = 2e-17
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 78 TELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEIIPYDKIRTAP 127
+ L FK+ DII + + +N W+ G+ N G FP ++VEI+ D P
Sbjct: 25 SLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVPPPQP 75
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 72.1 bits (177), Expect = 3e-17
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
L KKGDII + + + G N +G F F YV+++
Sbjct: 26 DSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLS 67
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 71.8 bits (177), Expect = 4e-17
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL F++GDII++ D NW++G GL P NYV
Sbjct: 19 ELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 72.0 bits (177), Expect = 4e-17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
E++ KKGDI+ + +K+W++ E N G P YV+ +
Sbjct: 21 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 71.7 bits (176), Expect = 6e-17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
E++ KKGDI+ + +K+W++ E N G P YV+ +
Sbjct: 18 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 58
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 70.7 bits (174), Expect = 8e-17
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL F++GD I V D NW++G + G+FP NYV +
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 9e-17
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+ T+LSF +G+ I + RQ +W+ GE G P N+V
Sbjct: 19 TDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 70.7 bits (174), Expect = 1e-16
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK+GD I V ++ W+EGE N G P NYV+ I
Sbjct: 18 DELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 71.2 bits (175), Expect = 1e-16
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHN---AMIGLFPFNYVEIIP 119
DN EL+F +G++I V + D+ W+ G G+FP ++V I+
Sbjct: 22 DNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 70.4 bits (173), Expect = 1e-16
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+L + GDII + +++W++G+ IG FP N+V+ +
Sbjct: 23 DLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 70.5 bits (173), Expect = 2e-16
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
E+SF DII +D W+ G GLFP NYVE+
Sbjct: 32 DEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG 75
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 70.5 bits (173), Expect = 2e-16
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL+FK GD+I V +K+W+ G+ + G FP ++V +
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWV 66
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 69.5 bits (171), Expect = 3e-16
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+FK G++I V D NW++GE++ GLFP N+V
Sbjct: 20 NELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 70.3 bits (172), Expect = 3e-16
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQA 135
E++ KKGDI+ + +K+W++ E N G P YV+ + + L + Q
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 69.6 bits (171), Expect = 3e-16
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL K GDII + +V++ W+ G N +GLFP N+V+ +
Sbjct: 23 ELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
Score = 26.8 bits (60), Expect = 1.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 126 APKKLSEGQARAKFNFVAQTHLELSLVK 153
P + Q + F ++ Q EL L
Sbjct: 1 GPLGSKKRQCKVLFEYIPQNEDELELKV 28
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 69.6 bits (171), Expect = 3e-16
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 79 ELSFKKGDIIF-VRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF G + V + W EG N GL P NYVE +
Sbjct: 26 ELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 69.2 bits (170), Expect = 4e-16
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+ ELSF DII + ++ W+ G GLFP NYV I
Sbjct: 17 QDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 69.3 bits (170), Expect = 5e-16
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 79 ELSFKKGDIIFVRRQ--VDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++P D
Sbjct: 25 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD 69
Score = 25.0 bits (55), Expect = 6.4
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 125 TAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ S+ + F + AQ EL++ +
Sbjct: 2 MDSRTKSKDYCKVIFPYEAQNDDELTIKE 30
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 69.3 bits (170), Expect = 5e-16
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQV--DKNWYEGEHNAMIGLFPFNYVEIIP 119
ELS ++GD++ + ++ D+ W++GE N IG FP YVE
Sbjct: 23 ELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Score = 29.2 bits (66), Expect = 0.24
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
S G A A++NF A+ ELSL +
Sbjct: 6 SGGTAVARYNFAARDMRELSLRE 28
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 68.7 bits (169), Expect = 5e-16
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+L K GD + + ++ WY+G N G+FP NYV+
Sbjct: 18 DLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 69.3 bits (170), Expect = 5e-16
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
E++ KKGDI+ + +K+W++ E N G P YV+ +
Sbjct: 33 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLA 73
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 69.4 bits (170), Expect = 5e-16
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELS KG + V + W+ G +N +G FP NYV
Sbjct: 33 ELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEG 73
Score = 26.7 bits (59), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
A KFN++A+ ELSL+K
Sbjct: 19 PAYVKFNYMAEREDELSLIK 38
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 69.4 bits (170), Expect = 6e-16
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKK 129
EL K GDII V +V++ W+EG N G+FP N+++ + + +
Sbjct: 34 ELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQ 84
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 68.9 bits (169), Expect = 7e-16
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEIIP 119
D EL+F GDII V ++D++ +Y GE N GL P N++E +
Sbjct: 25 VDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS 71
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 68.6 bits (168), Expect = 1e-15
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVD--KNWYEGEHNAMIGLFPFNYVEIIP 119
+L+F+ GD I V + D +W+EG+ G+FP NYV +
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 68.1 bits (167), Expect = 1e-15
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++
Sbjct: 23 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 68.0 bits (167), Expect = 1e-15
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
E+SF DII +D W+ G GLFP NYVE+
Sbjct: 24 DEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 68.0 bits (167), Expect = 1e-15
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL GDI+ V + + W+ E N G P +Y+E +
Sbjct: 24 ELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 67.6 bits (166), Expect = 1e-15
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYD 121
N EL K GDII + +V++ W+ G N +GLFP N+V+ + +
Sbjct: 13 QNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 67.8 bits (166), Expect = 2e-15
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNA-----MIGLFPFNYVEIIPYDKIRTAP 127
+LS G +I + ++ W++GE A G FP ++V+++ R +
Sbjct: 23 QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASG 76
Score = 27.8 bits (62), Expect = 0.83
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 135 ARAKFNFVAQTHLELSLVK 153
A+ +VA +LSL
Sbjct: 10 AQVTSAYVASGSEQLSLAP 28
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 68.3 bits (167), Expect = 2e-15
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 79 ELSFKKGDIIFVRRQV--DKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPK 128
E+SF GDII V + + W G G FP NYVE +P + A
Sbjct: 21 EMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEKAVS 72
Score = 26.3 bits (58), Expect = 3.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
RA + F A+ H E+S
Sbjct: 7 GYRALYPFEARNHDEMSFNS 26
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 67.3 bits (165), Expect = 2e-15
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+ KKGDI+ + +K+W++ E N G P Y++ +
Sbjct: 22 ELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 67.0 bits (164), Expect = 3e-15
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
E++ KKGDI+ + +K+W++ E N G P YV+ + + L + Q ++
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQEKS 73
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 67.4 bits (165), Expect = 3e-15
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 78 TELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNYVEII 118
TELS ++I V +D +W GE G P Y+E++
Sbjct: 32 TELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
Score = 28.1 bits (63), Expect = 0.56
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 127 PKKLSEGQARAKFNFVAQTHLELSLVK 153
+ + +AR +++ A ELSL+
Sbjct: 12 KESSNNRKARVLYDYDAANSTELSLLA 38
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 67.0 bits (164), Expect = 4e-15
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL+FK G+II V D NW++GE + IGLFP N+V
Sbjct: 29 AEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 66.4 bits (163), Expect = 4e-15
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+ G+II R+ D W+EG+ N GLFP N+V I
Sbjct: 16 DELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
Score = 25.2 bits (56), Expect = 4.2
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+A +F++ AQ EL++
Sbjct: 3 EAIVEFDYQAQHDDELTISV 22
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 66.5 bits (163), Expect = 4e-15
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 75 DNFTELSFKKGDIIFVRRQ---VDKNWYEGEHNAMIGLFPFNYVEIIP 119
D EL+F +GDI+ + Q + W++ + GL P N ++I+
Sbjct: 19 DCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 66.3 bits (162), Expect = 7e-15
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEIIPYD 121
L+ + GD++ V +D +Y GE GL P + ++ +
Sbjct: 26 QGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH 73
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 65.2 bits (160), Expect = 9e-15
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL F+ G+++ V + +W+ G + +GLFP NYV +
Sbjct: 17 ELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 66.3 bits (162), Expect = 9e-15
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 74 TDNFTELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNYVEIIPY-DKIRTAPKKL 130
TDN + LSF +GD+I + ++ W G GLFP + V+ D + ++
Sbjct: 19 TDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQRS 78
Query: 131 SEGQA 135
G +
Sbjct: 79 GSGPS 83
Score = 26.2 bits (58), Expect = 3.0
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 132 EGQARAKFNFVAQTHLELSLVK 153
G A +++ LS +
Sbjct: 8 SGYVIALRSYITDNCSLLSFHR 29
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 65.4 bits (160), Expect = 1e-14
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL+ K+GDI+ + + +D W+EGE N G+FP N+V+++P
Sbjct: 18 ELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 65.4 bits (160), Expect = 1e-14
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMI-GLFPFNYVEII 118
EL+F +G +I + W++G++ I FP NYVE I
Sbjct: 22 DELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 64.9 bits (159), Expect = 1e-14
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVD--KNWYEGEHNAMIGLFPFNYVEII 118
+L F+KGD+I + ++ D +W+ G N G+FP NYVE++
Sbjct: 19 DLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 64.9 bits (159), Expect = 2e-14
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIP 119
EL +KG+ I V + W +G G+FP +YV +
Sbjct: 23 ELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 66.0 bits (161), Expect = 2e-14
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNA---MIGLFPFNYVEIIPYDKIRTAPKKLSEGQA 135
EL+ G+ +F+ + W+ + GL P +V II + E
Sbjct: 21 ELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDVIEDIK 80
Query: 136 RAKFNFVAQTHLELSLVKESPHKYVDSEVTL 166
V + K + +Y S ++L
Sbjct: 81 SVNLPTVQEW-------KSNIARYKASNISL 104
Score = 25.9 bits (57), Expect = 5.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 135 ARAKFNFVAQTHLELSLVK 153
A ++F A+ EL+
Sbjct: 8 AIVLYDFKAEKADELTTYV 26
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 65.0 bits (159), Expect = 2e-14
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 79 ELSFKKGDIIFV---RRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
ELSF +G II + Q D ++EGE N IG+FP VE +
Sbjct: 24 ELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELS 67
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 65.0 bits (159), Expect = 2e-14
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG--EHNAMIGLFPFNYVEIIP 119
EL ++GD + V +Q D W+ G G FP NYV +
Sbjct: 23 ELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 63.8 bits (156), Expect = 4e-14
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEII 118
EL+F + D I VD +W+ GE + GLFP NYV +
Sbjct: 16 ELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 64.2 bits (157), Expect = 4e-14
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGL-FPFNYVEIIP 119
EL+F K II + + W+ G++ L FP NYVE +
Sbjct: 21 DELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 63.8 bits (156), Expect = 5e-14
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEHNA--MIGLFPFNYVEII 118
+ E+SF+ GD I + +D W G G+ P NY+E +
Sbjct: 18 QDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 63.5 bits (155), Expect = 6e-14
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 79 ELSFKKGDIIFVRRQVDKN---WYEGEHNAMIGLFPFNYVEIIP 119
ELSF+KGDI+ V Q + W+ + G+ P N ++I+
Sbjct: 19 ELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 64.2 bits (156), Expect = 7e-14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKN-WYEGEH-NAMIGLFPFNYVEIIPYDKIRTAPKKLS 131
+ EL G ++V +D++ +YEGE + GL P N+V+ + ++ R A
Sbjct: 35 NPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLASTSGP 93
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 63.0 bits (154), Expect = 8e-14
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFV--RRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL+F++G+II + + + W++GE N G+FP N+ I
Sbjct: 22 ELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 62.6 bits (153), Expect = 1e-13
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
EL +GDI+F+ + + W E+ + GL P +V I
Sbjct: 17 ELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 63.1 bits (154), Expect = 1e-13
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 58 RRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKN-WYEGEH--NAMIGLFPFNY 114
+ ++ + ++ + LSF +GD++ + +K+ W GEH G FP +Y
Sbjct: 6 SGQKVKTIFPHTAGNNKT---LLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSY 62
Query: 115 VEIIP 119
+++
Sbjct: 63 TKLLS 67
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 62.6 bits (153), Expect = 1e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGL-FPFNYVEIIP 119
EL+F K II + D W+ G++ L FP NYVE +
Sbjct: 18 DELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 62.7 bits (153), Expect = 1e-13
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 75 DNFTELSFKKGDIIFV-RRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
DN T LSFK+GD+I + + W+ GE M G FPF+Y ++
Sbjct: 20 DNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 62.7 bits (153), Expect = 1e-13
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHN-----AMIGLFPFNYVEI 117
+L+F+K I V D WY GE+ + G+FP ++V +
Sbjct: 23 DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV 66
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 63.4 bits (154), Expect = 1e-13
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 65 LHDISSRRHTDNFT----ELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVEIIP 119
L D + N EL FK+G II V D + +Y GE A +GL P N V I
Sbjct: 23 LFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQ 82
Query: 120 YDKIRTAPK 128
D +
Sbjct: 83 ADDEEMMDQ 91
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 62.3 bits (152), Expect = 2e-13
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 75 DNFTELSFKKGDIIFV-RRQVDKNWYEGEH--NAMIGLFPFNYVEIIP 119
N T LSF +GD+I + + W GEH + G FP +Y +++
Sbjct: 19 SNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 61.9 bits (151), Expect = 2e-13
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
+L FKKGDI+ +R + ++ W+ E G+ P YVE
Sbjct: 18 EDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH 60
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 61.8 bits (151), Expect = 2e-13
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKN-WYEGEHNAMIGLFPFNYVE 116
E+S GDII V R D + W GE + + GLFP +Y +
Sbjct: 15 DEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 61.4 bits (150), Expect = 3e-13
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPY 120
+L FKKGDI+ +R + ++ W+ E G+ P YVE Y
Sbjct: 16 EDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE--KY 57
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 61.8 bits (150), Expect = 4e-13
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKNWYEGEHN------AMIGLFPFNYVEII 118
+ T L+ + GD+I V Q ++G + IG FP VE++
Sbjct: 30 LHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 61.1 bits (149), Expect = 5e-13
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
+L+F +G+ I V Q D W+ G G+FP NYV+
Sbjct: 23 GDLTFTEGEEILVT-QKDGEWWTGSIGDRSGIFPSNYVKPK 62
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 60.7 bits (148), Expect = 6e-13
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 79 ELSFKKGDIIFVRRQVDK-NWYEGEHNAMIGLFPFNYVEIIPYD 121
EL+ + G+II +++ + W EGE N G+FP N+V+ I +
Sbjct: 17 ELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 60.8 bits (148), Expect = 6e-13
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+ELS + G+++ V + + W+ + G P Y+E
Sbjct: 23 SELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQN 64
Score = 26.5 bits (59), Expect = 2.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
Q N+ Q + ELSL
Sbjct: 10 QYVVVSNYKKQENSELSLQA 29
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 61.3 bits (149), Expect = 9e-13
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 79 ELSFKKGDIIFVRRQVDKN----WYEGE-HNAMIGLFPFNYVEIIPYDKIRTAPK 128
E+SF+ GD++ + + + W GL P NYV+I+ + R +
Sbjct: 33 EISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGRKTIE 87
Score = 25.9 bits (57), Expect = 4.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
ARA+++FVA + E+S
Sbjct: 19 VARAEYDFVAVSDEEISFRA 38
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 65.2 bits (158), Expect = 9e-13
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 73 HTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+ + T+L KKG + V +++ Y+ E + IG P Y+
Sbjct: 259 NAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTA 305
Score = 57.5 bits (138), Expect = 4e-10
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
+L F++G+ + + + +++W+E + GL P NYV+I K S+ +
Sbjct: 163 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGS 222
Query: 138 KFNFVAQTHLELSLVKESPH--KYVDSEVTLQYRRPVRNEIKEL 179
+ + + R P + +L
Sbjct: 223 SGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQL 266
Score = 44.8 bits (105), Expect = 7e-06
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 10/91 (10%)
Query: 70 SRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFP-------FNYVEIIPYDK 122
+ R D E + +I + FP + ++
Sbjct: 81 TVREAD---EGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137
Query: 123 IRTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ A KK F F + +L +
Sbjct: 138 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQ 168
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 60.4 bits (147), Expect = 1e-12
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIP 119
E++ ++ D++ V +Q D W GE + G FP ++ I
Sbjct: 33 EVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFARFIS 74
Score = 25.8 bits (57), Expect = 4.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
Q F A+ E++L +
Sbjct: 19 QVEITKAFFAKQADEVTLQQ 38
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 60.4 bits (147), Expect = 1e-12
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIP 119
EL +GDI+F+ + + W E+ + GL P +V I
Sbjct: 21 ELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 60.0 bits (146), Expect = 1e-12
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGE-HNAMIGLFPFNYVEIIP 119
EL+ +GDII V + +++W+ G G FP N+V
Sbjct: 22 ELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 60.0 bits (146), Expect = 2e-12
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 75 DNFTELSFKKGDIIFV-RRQVDKNWYEGEHNA-MIGLFPFNYVEIIP 119
EL+ +G+II V V W EG++N GL P +YVEI+P
Sbjct: 22 PGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILP 68
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 61.2 bits (148), Expect = 2e-12
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
ELS K+GDII + ++ + W+ GE IG FP NYVE + G
Sbjct: 21 ELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDY------SEYLPETGGGSG 74
Query: 138 KFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEELARRQAE 191
+L E+ + VD+ + + + + E A
Sbjct: 75 SSMTYKLILNGKTLKGETTTEAVDAA---TAEKVFKQYANDNGVDGEWTYDDAT 125
Score = 27.0 bits (59), Expect = 3.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
+ G A+A+++F A+ ELSL +
Sbjct: 4 TFGTAKARYDFCARDRSELSLKE 26
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 59.2 bits (144), Expect = 2e-12
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+ + TD E+SF KGD+ V +++ W + GL + VE +
Sbjct: 13 ILPYTKVPDTD---EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 59.7 bits (145), Expect = 2e-12
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNA--MIGLFPFNYVE 116
EL+F+KGD++ + +K+WY +H+ GL +
Sbjct: 33 ELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALR 73
Score = 28.1 bits (63), Expect = 0.68
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 124 RTAPKKLSEG-QARAKFNFVAQTHLELSLVK 153
R ++ + G Q K EL+ K
Sbjct: 8 RMPTRRWAPGTQCITKCEHTRPKPGELAFRK 38
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 59.2 bits (144), Expect = 3e-12
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
E+ F+KG + V R+ + W+ + G P +Y++
Sbjct: 24 EIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 58.7 bits (143), Expect = 3e-12
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 72 RHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIP 119
RH D EL + D + V Q + WYE G+FP Y +
Sbjct: 15 RHED---ELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Score = 26.0 bits (58), Expect = 2.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
SE RA F FV + EL L
Sbjct: 2 SEQTHRAIFRFVPRHEDELELEV 24
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 58.8 bits (143), Expect = 4e-12
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 72 RHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPYD 121
RH D EL + D + V Q + WYE G+FP Y + +
Sbjct: 18 RHED---ELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE 66
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 63.1 bits (152), Expect = 4e-12
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 73 HTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
+ + T L+ + G+++ V + +EGE N G FPF +V ++
Sbjct: 249 NAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD 295
Score = 51.9 bits (123), Expect = 4e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYDKIRTAPK 128
+L FKKGDI+ +R + ++ W+ E G+ P YVE +
Sbjct: 150 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSAL 200
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 58.7 bits (142), Expect = 6e-12
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
E+SF G + V + + W+ + G P +Y+ + + P G +
Sbjct: 24 EISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV--LDENEQPDPSGKESGPSSG 80
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 58.0 bits (141), Expect = 6e-12
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 78 TELSFKKGDIIFVRRQVD-KNWYEGE-HNAMIGLFPFNYVEII 118
ELSFK GD + + D + W G + +GL+P NYVE I
Sbjct: 18 DELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 58.1 bits (141), Expect = 7e-12
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+LSF KG+ + + +W+E G P NYV +
Sbjct: 31 DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 61.6 bits (148), Expect = 2e-11
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
T L+ + GDI+ V R +EGE N GLFPF +V+I
Sbjct: 254 TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Score = 48.1 bits (113), Expect = 5e-07
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYD 121
+L FKKG+I+ + + ++ W+ + + +G+ P YVE +
Sbjct: 141 DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRS 184
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 61.5 bits (148), Expect = 2e-11
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII-PYDKIRTAPKKLSEGQAR 136
EL+FK GD+IF+ +++K+W EG G+FP ++V+I+ + + L
Sbjct: 189 LELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYE 248
Query: 137 AKFNFVAQTHLELSLVKESPHK---------YVDSEVTLQYRRPVRNEIKELISEEEL 185
+ + +E L K + ++ L YR + + L+S+E++
Sbjct: 249 DTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLV-RLLSDEDV 305
Score = 27.6 bits (60), Expect = 3.1
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 8/105 (7%)
Query: 12 PNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDISSR 71
P S V N ++ E+ + + ++ L++L +++ R
Sbjct: 222 PLSFVKILKDFPEEDDPTNWLRCYYYEDTI---STIKDIAVEEDLSSTPLLKDLLELTRR 278
Query: 72 RHTDN--FTELSFKKGDIIFVRRQVDKNWYEGEHN---AMIGLFP 111
+GD++ + D + + LFP
Sbjct: 279 EFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 56.5 bits (137), Expect = 2e-11
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEIIPY 120
+D EL KKGD+I++ R+ W G+ + G P Y++ P+
Sbjct: 6 AYDFPGSGSPS---ELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK--PH 58
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 55.7 bits (135), Expect = 6e-11
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
N EL+ +G+ + V + W G P N +E +
Sbjct: 20 NPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
Score = 26.4 bits (59), Expect = 1.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ + + F A+ EL++V+
Sbjct: 9 KMQVLYEFEARNPRELTVVQ 28
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 55.2 bits (133), Expect = 7e-11
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
ELS G + V W+ G +N IG FP NYV
Sbjct: 17 ELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE 56
Score = 24.8 bits (54), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 134 QARAKFNFVAQTHLELSL 151
A F +VA+ ELSL
Sbjct: 3 PAFVXFAYVAEREDELSL 20
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 55.3 bits (134), Expect = 8e-11
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
N ELS K +++ V + W + G P N +
Sbjct: 20 NANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63
Score = 26.8 bits (60), Expect = 1.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ ++F A+ ELS++K
Sbjct: 9 YVKILYDFTARNANELSVLK 28
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 55.0 bits (133), Expect = 8e-11
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 DNFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
D+ E+SF++ +I+ V ++ W++ N G+ P NYV++I
Sbjct: 19 DDAYEISFEQNEILQV-SDIEGRWWKARRANGETGIIPSNYVQLID 63
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 55.1 bits (133), Expect = 1e-10
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 79 ELSFKKGDIIFVRRQVD----KNWYEGEHNAMIGLFPFNYVEIIP 119
ELS + + D W+ E N G P NY+
Sbjct: 29 ELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 55.2 bits (133), Expect = 1e-10
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 79 ELSFKKGDIIFV--RRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
EL+F+KG+ + V + + D W++ ++ +GL P NYV ++
Sbjct: 33 ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 76
Score = 25.9 bits (57), Expect = 4.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ + F + T EL+ K
Sbjct: 19 VVQTLYPFSSVTEEELNFEK 38
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 54.2 bits (131), Expect = 2e-10
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 74 TDNFTELSFKKGDIIFVRRQVDKNWYEGE--HNAMIGLFPFNYVEII 118
+ + +EL KKGDI+F+ R W + + G P Y+
Sbjct: 14 SGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 54.2 bits (131), Expect = 2e-10
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 79 ELSFKKGDIIFV--RRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
EL+F+KG+ + V + + D W++ ++ +GL P NYV ++
Sbjct: 22 ELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 53.7 bits (130), Expect = 2e-10
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
EL+ K GD +++ + K+W+ + + GL P ++E +
Sbjct: 18 ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
Score = 25.6 bits (57), Expect = 3.2
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ +++F+A++ EL++
Sbjct: 4 RGIVQYDFMAESQDELTIKS 23
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 53.7 bits (130), Expect = 3e-10
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEII 118
L+D + LS KG+ + V + W E + G P Y+ +
Sbjct: 11 LYDFVASGDN----TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 54.1 bits (130), Expect = 3e-10
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 78 TELSFKKGDIIFV-----RRQVDKNWYEGE-HNAMIGLFPFNYVE 116
EL+ ++GD + V D+ W+ G+ + +G+FP NYV
Sbjct: 44 EELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 54.0 bits (130), Expect = 4e-10
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 79 ELSFKKGDIIFVRR----QVDKNWYEG--EHNAMIGLFPFNYVEIIPYDKIRTAPK 128
EL GD IF+ + W G GL P NY+
Sbjct: 32 ELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECSTWIFHG 87
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 53.5 bits (129), Expect = 4e-10
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 78 TELSFKKGDIIFVRRQVD-----KNWYEGE-HNAMIGLFPFNYVEII 118
E++ KKGD++ + + D +W++ N IG P+NY+EII
Sbjct: 23 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 54.9 bits (132), Expect = 4e-10
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNA---MIGLFPFNYVEII 118
EL G+ + + D W+ + GL P +YV II
Sbjct: 19 ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 53.4 bits (129), Expect = 4e-10
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNA-MIGLFPFNYVE 116
+L F KGD++ + D NWY+ ++ G+ P NYV+
Sbjct: 27 DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
Score = 26.8 bits (60), Expect = 1.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ AK+NF +L K
Sbjct: 13 ECIAKYNFHGTAEQDLPFCK 32
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 53.0 bits (128), Expect = 5e-10
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYDK 122
+L+FKKG+I+ V + W+ + GL P Y+E PY +
Sbjct: 26 DLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE--PYSE 68
Score = 24.9 bits (55), Expect = 7.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ A +F AQ +L+ K
Sbjct: 12 EYIAVGDFTAQQVGDLTFKK 31
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 53.0 bits (128), Expect = 5e-10
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVE 116
+L +KGD F+ + + W+ N G P NYV
Sbjct: 24 DLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
Score = 26.0 bits (58), Expect = 2.5
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+ A ++++ +L L K
Sbjct: 10 KVVALYDYMPMNANDLQLRK 29
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 52.8 bits (127), Expect = 7e-10
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH---------NAMIGLFPFNYVE 116
+LSF+ GD + V + W+ H + G P NYV
Sbjct: 23 DLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
Score = 26.2 bits (58), Expect = 2.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
S A F++ A+T +LS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRA 28
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 53.2 bits (128), Expect = 7e-10
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+LSF KG+ + +W+E G P NYV +
Sbjct: 22 DLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 52.2 bits (126), Expect = 9e-10
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
+L ++G + + D +W+ G P NYV
Sbjct: 18 DLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
Score = 24.5 bits (54), Expect = 9.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 135 ARAKFNFVAQTHLELSLVK 153
A ++F A +L L +
Sbjct: 5 VVAMYDFQATEAHDLRLER 23
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 52.4 bits (126), Expect = 1e-09
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+LSF KG+ + + +W+E G P Y+ +
Sbjct: 21 DLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 52.0 bits (125), Expect = 1e-09
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAM--------IGLFPFNYVEII 118
E++ KKGDI+ + +K+W++ E G P YV+ +
Sbjct: 17 EVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL 64
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 51.9 bits (125), Expect = 1e-09
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
EL+ K GD +++ + K+W+ + + GL P ++E +
Sbjct: 22 ELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
Score = 25.7 bits (57), Expect = 3.3
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 131 SEGQARAKFNFVAQTHLELSLVK 153
S+ + +++F+A++ EL++
Sbjct: 5 SKKRGIVQYDFMAESQDELTIKS 27
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 51.7 bits (124), Expect = 2e-09
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
E+SF KGD+ V +++ W + GL + VE +
Sbjct: 22 EISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 50.9 bits (122), Expect = 4e-09
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 78 TELSFKKGDIIFVRRQVD-----KNWYEGE-HNAMIGLFPFNYVEIIP 119
E++ KKGD++ + + D +W++ N IG P+NY+EII
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK 77
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 50.8 bits (122), Expect = 4e-09
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYDKI 123
EL+ ++ + + + +W+ + N G P +Y+ + +
Sbjct: 35 ELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPNNL 80
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 132 EGQARAKFNFVAQTHLELSLVK 153
E A +++ EL+L +
Sbjct: 19 ETVVIALYDYQTNDPQELALRR 40
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 50.5 bits (121), Expect = 5e-09
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMI-----GLFPFNYVE 116
ELSF+ GD+ V R+ ++ W+ + G P NY+
Sbjct: 26 ELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 50.6 bits (121), Expect = 7e-09
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 78 TELSFKKGDIIFV-----RRQVDKNWYEGE-HNAMIGLFPFNYVEIIP 119
E++ KKGD++ + D +W++ N IG P+NY+EII
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK 77
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 52.8 bits (126), Expect = 1e-08
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEII 118
EL F++GD I V D NW++G + G+FP NYV +
Sbjct: 174 ELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 50.8 bits (121), Expect = 5e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
ELSFK+GDI+ V + D+NWY+ E N G P NY+E+ P+ +A+A
Sbjct: 16 ELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHP-----WFFGKIPRAKA 70
Query: 138 KFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVR 173
+ Q H L++ES D +++++ V+
Sbjct: 71 EEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQ 106
Score = 27.7 bits (61), Expect = 2.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 134 QARAKFNFVAQTHLELSLVK 153
+A AK++F A ELS +
Sbjct: 2 EAIAKYDFKATADDELSFKR 21
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 50.9 bits (121), Expect = 1e-08
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 79 ELSFKKGDIIFV-----RRQVDKNWYEG----------EHNAMIGLFPFNYVEII 118
EL K GD++ V + D+ W G E G+FP N+ E +
Sbjct: 60 ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 114
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 49.3 bits (118), Expect = 1e-08
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVD-KNWYEGE-HNAMIGLFPFNYVEIIP 119
EL+ ++ +++ V D ++W + +G P Y++
Sbjct: 29 ELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPT 71
Score = 26.6 bits (59), Expect = 2.4
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 125 TAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ + + +++ A EL++ +
Sbjct: 6 SGTLRNYPLTCKVVYSYKASQPDELTIEE 34
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 50.2 bits (120), Expect = 1e-08
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNA--MIGLFPFNYVEII 118
+LSFKKG+ + + +W+E A G P NYV
Sbjct: 43 DLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA 84
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 51.7 bits (123), Expect = 1e-08
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEI 117
T+L F++G+ + + + +++W+E + GL P NYV+I
Sbjct: 133 TDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI 173
Score = 30.1 bits (67), Expect = 0.37
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 7/82 (8%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFP-------FNYVEIIPYDKIRTAPKKLS 131
E + +I + FP + ++ + A KK
Sbjct: 58 EGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPI 117
Query: 132 EGQARAKFNFVAQTHLELSLVK 153
F F + +L +
Sbjct: 118 IEVVVGTFKFTGERETDLPFEQ 139
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 51.8 bits (123), Expect = 2e-08
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQARA 137
+L FKKGDI+ +R + ++ W+ E G+ P YVE Y + L G
Sbjct: 152 DLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE--KYRPASASVSALIGGNQEG 209
Query: 138 KFN 140
Sbjct: 210 SHP 212
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 49.0 bits (117), Expect = 2e-08
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+LSF+KGD + V + W++ G P NYV +
Sbjct: 41 DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV 81
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 49.7 bits (118), Expect = 3e-08
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEG---EHNAMIGLFPFNYVEIIPY 120
+LS + GD++ ++ +WY G +H + G+FP +++ I
Sbjct: 75 QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKEV 118
Score = 26.6 bits (58), Expect = 3.8
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 119 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
+ E A +NF +LSL
Sbjct: 46 SGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQI 80
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 48.4 bits (116), Expect = 3e-08
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGE-HNAMIGLFPFNYVEIIP 119
+S +G+ + + W G P +Y+ +
Sbjct: 23 TISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTS 65
Score = 28.0 bits (63), Expect = 0.52
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 126 APKKLSEGQARAKFNFVAQTHLELSLVK 153
S G A ++F + +S+ +
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAE 28
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 47.8 bits (114), Expect = 4e-08
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHN 104
E++ KKGDI+ + +K+W++ E N
Sbjct: 37 EVTMKKGDILTLLNSTNKDWWKVEVN 62
Score = 28.1 bits (63), Expect = 0.39
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 108 GLFPFNYVEIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
G P YV+ + + A +++ ++ E+++ K
Sbjct: 5 GFVPAAYVKKLDSGTGKE--------LVLALYDYQEKSPREVTMKK 42
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 47.4 bits (113), Expect = 7e-08
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVE 116
EL+ + + ++ + +W+ + N G P +Y+
Sbjct: 36 ELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
Score = 26.2 bits (58), Expect = 3.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 124 RTAPKKLSEGQARAKFNFVAQTHLELSLVK 153
R + ++ E A +++ EL+L
Sbjct: 12 RRSFQEPEETLVIALYDYQTNDPQELALRC 41
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 47.7 bits (113), Expect = 7e-08
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 45 QAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGDII-FVRRQVDKNWYEGEH 103
+A+ +R + + QE + I L GDI+ + + + NW+EG +
Sbjct: 1 RAQDKKRNELGLPKMEVFQEYYGIPPPPGAFG-GFLRLNPGDIVELTKAEAEHNWWEGRN 59
Query: 104 --NAMIGLFPFNYVEIIPY 120
+G FP N V PY
Sbjct: 60 TATNEVGWFPCNRVH--PY 76
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 47.3 bits (112), Expect = 7e-08
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 78 TELSFKKGDIIFV-RRQVDKNWYEGEH--NAMIGLFPFNYVEIIPY 120
L GDI+ + + + + NW+EG + +G FP N V PY
Sbjct: 25 PFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH--PY 68
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 47.3 bits (113), Expect = 7e-08
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEII 118
+LSFKKG+ + V + W++ + G P NYV +
Sbjct: 23 DLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKL 63
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 47.1 bits (112), Expect = 8e-08
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 79 ELSFKKGDIIFVRRQVDKNW----YEGEHNAMIGLFPFNYVEII 118
F++G + V + W G P NY+E
Sbjct: 25 TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 46.1 bits (109), Expect = 3e-07
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 17/58 (29%)
Query: 79 ELSFKKGDIIFV---------------RRQVDKNWYEG--EHNAMIGLFPFNYVEIIP 119
+L GD++ V R W G E G FP YVE +
Sbjct: 27 DLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLG 84
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 44.8 bits (107), Expect = 4e-07
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 79 ELSFKKGDIIFVRRQVDKNW---YEGEHNAMIGLFPFNYVEI 117
E++ GD I + + + + GL P Y+ I
Sbjct: 17 EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 45.0 bits (107), Expect = 4e-07
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
N +ELS K+ D++ V K W + G P+N + P
Sbjct: 21 NSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTPYP 64
Score = 26.1 bits (58), Expect = 2.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 135 ARAKFNFVAQTHLELSLVK 153
++F A+ ELS+ +
Sbjct: 11 VLCNYDFQARNSSELSVKQ 29
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 47.8 bits (112), Expect = 5e-07
Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 21/132 (15%)
Query: 3 SPIQTTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYL 62
+ P SE P + + A R K
Sbjct: 88 TQPAAGAQEPGETAASEAA-SSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKV- 145
Query: 63 QELHDISSRRHTDNFTELSFKKGDIIFV-----RRQVDKNWYEG----------EHNAMI 107
Q HD ++ + EL K GD++ V + D+ W G +
Sbjct: 146 QAQHDYTA----TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCR 201
Query: 108 GLFPFNYVEIIP 119
G+FP N+ E +P
Sbjct: 202 GVFPENFTERVP 213
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 44.2 bits (105), Expect = 6e-07
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 79 ELSFKKGDIIFVRRQVDKNWY-EGEHNAMIGLFPFNYVE 116
+L F+KG+ + + Q + W + G PFN+V
Sbjct: 22 DLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 43.6 bits (103), Expect = 2e-06
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGEHNAM--IGLFPFNYVE 116
+ F++G+ + V + W++ + P V
Sbjct: 32 SPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVA 71
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 42.3 bits (100), Expect = 4e-06
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 76 NFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEIIP 119
EL KK + +++ K+W+ + G P NYVE
Sbjct: 20 QEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKN 63
Score = 26.5 bits (59), Expect = 2.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 126 APKKLSEGQARAKFNFVAQTHLELSLVK 153
E AKF++VAQ EL + K
Sbjct: 1 GSTMAEEVVVVAKFDYVAQQEQELDIKK 28
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 41.9 bits (99), Expect = 5e-06
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 59 RKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVEI 117
+KY + +D +R N +ELS K D++ + W++ + + G P N ++I
Sbjct: 1 KKYAKSKYDFVAR----NSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGFVPNNILDI 55
Query: 118 IP 119
+
Sbjct: 56 MR 57
Score = 25.3 bits (56), Expect = 4.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 135 ARAKFNFVAQTHLELSLVK 153
A++K++FVA+ ELS++K
Sbjct: 4 AKSKYDFVARNSSELSVMK 22
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 8e-06
Identities = 36/253 (14%), Positives = 80/253 (31%), Gaps = 48/253 (18%)
Query: 9 DNRPNSIVDSEV--TLQYRRPV--RNEIKELI---SEEELARRQAEAMRRIYQEERRRKY 61
+ + + + + + EI +I R + QEE +K+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKF 82
Query: 62 LQELHDISSRRHTDNFTEL--SFKKGDIIFVRRQVDKNWYEGEHNAMIG---LF-PFNYV 115
++E+ N+ L K + + Y + + + +F +N
Sbjct: 83 VEEVLR-------INYKFLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 116 EIIPYDKIRTAPKKLSEGQ----------------ARAKFNFVAQTHLE-----LSLVK- 153
+ PY K+R A +L + ++ Q ++ L+L
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 154 ESPHKYVDSEVTLQYR-RPVRNEIKELISEEELARRQA-EAMRRIYQEERRRKYLQELHD 211
SP ++ L Y+ P + S +L +RR+ + + L L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 212 ISSRRHTDNFTYR 224
+ + + + F
Sbjct: 253 VQNAKAWNAFNLS 265
Score = 38.7 bits (89), Expect = 0.001
Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 49/235 (20%)
Query: 7 TTDNRPNSIVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYL---- 62
TT R + D + ++ +E+ + + Q+ R
Sbjct: 271 TT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 63 ------QELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
+ + D + DN+ ++ K I + ++ E+ M F+ +
Sbjct: 329 RLSIIAESIRDGLAT--WDNWKHVNCDKLTTI-IESSLN-VLEPAEYRKM-----FDRLS 379
Query: 117 IIPYD-KIRTAPKKL-----SEGQARAKFNFVAQTHLELSLVKESPHKYVDS--EVTLQY 168
+ P I P L + V + H + SLV++ P + S + L+
Sbjct: 380 VFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLEL 435
Query: 169 RRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTY 223
+ + NE L R + Y + + + D+ + D + Y
Sbjct: 436 KVKLENEY-------ALHRSIVDH----YN--IPKTF--DSDDL-IPPYLDQYFY 474
Score = 27.5 bits (60), Expect = 5.1
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 157 HKYVDSEVT---LQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDIS 213
H ++D E QY+ + + + + + + I +E E+ I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKE-------EIDHII 55
Query: 214 SRRHTDNFTYRI 225
+ + T R+
Sbjct: 56 MSKDAVSGTLRL 67
Score = 27.1 bits (59), Expect = 5.4
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 36 ISEEELARRQAEAMRRIYQEER--RRK-------------YLQELHDISS-RRH-TDNFT 78
+ E R R ++ + R +K L L + + + DN
Sbjct: 481 LKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 79 ELSFKKGDII-FVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPK 128
+ I+ F+ + +++N ++ ++ + E I + + +
Sbjct: 540 KYERLVNAILDFLPK-IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 41.6 bits (98), Expect = 1e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIPYDKIRTAPKKLSEGQA 135
+LSF+KGD + V + W++ G P NYV + + + QA
Sbjct: 19 DLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGGGTSGGGRHRRRQA 76
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 44.4 bits (103), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 79 ELSFKKGDIIFVRRQVD-KNWYEGE-HNAMIGLFPFNYVEII 118
ELSFK GD + D + W +G N +GL+P NYVE I
Sbjct: 444 ELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH-NAMIGLFPFNYVE 116
EL KK + +++ K W+ + G P NYVE
Sbjct: 20 ELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE 57
Score = 24.5 bits (54), Expect = 8.2
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 130 LSEGQ-ARAKFNFVAQTHLELSLVK 153
++E AK+++ AQ EL + K
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKK 25
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 39.4 bits (92), Expect = 8e-05
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVE 116
EL KK + +++ W G P NYVE
Sbjct: 47 ELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 84
Score = 24.8 bits (54), Expect = 9.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 126 APKKLSEGQARAKFNFVAQTHLELSLVK 153
E AK+++ AQ EL + K
Sbjct: 25 NLHMTEEVIVIAKWDYTAQQDQELDIKK 52
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 41.5 bits (97), Expect = 1e-04
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIP 119
EL FK GD+I V ++ W+ G G FP ++V +
Sbjct: 46 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV 86
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 40.1 bits (93), Expect = 1e-04
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGE---HNAMIGLFPFNYVEIIP 119
+LS + GD++ ++ +WY G H + G+FP +++ I
Sbjct: 33 QLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE 75
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 38.1 bits (88), Expect = 4e-04
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 78 TELSFKKGDIIFVRRQ---VDKNWYEGE--------HNAMIGLFPFNYVEII 118
L+ +G +++V + + ++ G A +G FP + V
Sbjct: 37 RFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED 88
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH--NAMIGLFPFNYVEIIP 119
E+ + GDII V + +G + GL+P V
Sbjct: 458 EIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI 500
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 35.8 bits (82), Expect = 0.001
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 79 ELSFKKGDIIFV---------------RRQVDKNWYEG--EHNAMIGLFPFNYVEIIPYD 121
++ GDI+ V R + W G E G FP YVE I
Sbjct: 21 DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK 80
Query: 122 KI 123
KI
Sbjct: 81 KI 82
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 35.7 bits (81), Expect = 0.009
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 44 RQAEAMRRI---YQEE--RRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQ----- 93
AE +R + + E +R KY+ L D + ++ LSF KGD+I +
Sbjct: 553 SNAEDIRDLVVTFLEGLRKRSKYVVALQDNPNPAGEES-GFLSFAKGDLIILDHDTGEQV 611
Query: 94 VDKNWYEG--EHNAMIGLFPFNYVEIIP 119
++ W G E G FP + V ++P
Sbjct: 612 MNSGWANGINERTKQRGDFPTDCVYVMP 639
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 35.5 bits (82), Expect = 0.009
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNA--MIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ + G P NYV
Sbjct: 8 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 35.1 bits (81), Expect = 0.011
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEHNAMIGLFPFNYVEIIPYDKIRTAPKKLS 131
EL+F KG II V + D +W++GE + +GLFP NYV++
Sbjct: 18 ELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWCSDL 70
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 35.1 bits (81), Expect = 0.015
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNAMIGLFPFNYV 115
LS KG+ + V + W E + G P NY+
Sbjct: 59 TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 96
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 32.3 bits (73), Expect = 0.027
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 54 QEERRRKYLQELHDISSR-RHTDNFT-----ELSFKKGDIIFVRRQVD----KNWYEGEH 103
L + + NF ++S +GD++ V ++ D +N + ++
Sbjct: 2 SSGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN 61
Query: 104 NAMIGLFPFNYVEIIPYDKIRTAPK 128
G ++++ PY+ R+
Sbjct: 62 GVTKGFVYSSFLK--PYNPRRSHSD 84
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 34.1 bits (78), Expect = 0.028
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNA--MIGLFPFNYV 115
L+D SR TD LSFKKG+ + + + +W+ + G P NYV
Sbjct: 91 LYDYESRTETD----LSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 33.5 bits (77), Expect = 0.051
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 79 ELSFKKGDIIFV-RRQVDKNWYEGEHNA-MIGLFPFNYVEIIPYDKIRTAPKKLSE 132
+L F KGD++ + D NWY+ ++ G+ P NYV+ + ++ K
Sbjct: 27 DLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ--KREGVKAGTKLSLM 80
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 33.1 bits (76), Expect = 0.057
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 65 LHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNA--MIGLFPFNYV 115
L+D + H D LSF+KGD + V + W++ A G P NYV
Sbjct: 14 LYDYEAIHHED----LSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 61
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics,
structural genomics consortium, SGC, alternative
splicing, RNA-binding; 1.75A {Homo sapiens}
Length = 94
Score = 29.0 bits (65), Expect = 0.45
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 62 LQEL-HDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWY-------EGEHNAMIGLFPFN 113
L +L ++++ +L+ GDI+ + +WY N + F
Sbjct: 7 LDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG 66
Query: 114 YVEIIPYDKIRTAPKKLSE--GQA 135
P +R QA
Sbjct: 67 DNGDCPLKDLRALRSDFLSLPFQA 90
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.73
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 36 ISEEELARRQAEAMRRIYQEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVD 95
I++ + ++ E++R+ E +RK LQEL D +S+ + + ++
Sbjct: 74 IAQADRLTQEPESIRK--WREEQRKRLQEL-DAASKV----------MEQEWREKAKKDL 120
Query: 96 KNWYEGEHNAM 106
+ W + + +
Sbjct: 121 EEWNQRQSEQV 131
Score = 26.7 bits (58), Expect = 5.5
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 180 ISEEELARRQAEAMRRIYQEERRRKYLQELHDISSRR 216
I++ + ++ E++R+ E +RK LQEL D +S+
Sbjct: 74 IAQADRLTQEPESIRK--WREEQRKRLQEL-DAASKV 107
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 28.9 bits (64), Expect = 0.83
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 54 QEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEGEHNAM--IGLFP 111
+ + LH D L F+KG+ + + Q W++ + G P
Sbjct: 7 ASPLQDNLVIALHSYEPSHDGD----LGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIP 61
Query: 112 FNYVEIIPY 120
FN+V
Sbjct: 62 FNFVAKANS 70
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 29.3 bits (66), Expect = 0.88
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH 103
LSF+ GD++ V D+ W++
Sbjct: 22 ALSFRFGDVLHVIDAGDEEWWQARR 46
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 29.0 bits (65), Expect = 1.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 80 LSFKKGDIIFVRRQVDKNWYEGEH 103
L FK GDI+ V D W++
Sbjct: 27 LPFKHGDILHVTNASDDEWWQARR 50
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.34.9.1
Length = 78
Score = 27.1 bits (60), Expect = 1.2
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 81 SFKKGDIIFVRRQVDKNWYEG--------EHNAMIGLFPFNYVEIIPYDKIRTAPKKLSE 132
+K GD F D +Y A++ + E + I+ +
Sbjct: 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWV 68
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.34.9.1
Length = 110
Score = 27.9 bits (62), Expect = 1.2
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 56 ERRRKYLQEL-HDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG-------EHNAMI 107
R L +L ++++ +L+ GDI+ + +WY N +
Sbjct: 6 SGRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDL 65
Query: 108 GLFPFNYVEIIPYDKIRTAPKKLSE--GQA-RAKFNFVA 143
F P +R QA +A
Sbjct: 66 YFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIA 104
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase
domain, transferase; HET: MSE ADP; 2.10A {Bacillus
subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Length = 218
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 29 RNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDI 68
R E + L EE+L + EER+R ++L D
Sbjct: 2 RKERERL--EEKLEDANERIAELVKLEERQR-MARDLVDT 38
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 173 RNEIKELISEEELARRQAEAMRRIYQEERRRKYLQELHDI 212
R E + L EE+L + EER+R ++L D
Sbjct: 2 RKERERL--EEKLEDANERIAELVKLEERQR-MARDLVDT 38
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 28.6 bits (63), Expect = 1.5
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 78 TELSFKKGDIIFVRRQVDKNWYEGE 102
+ L F +GD+ V + +
Sbjct: 19 SGLGFTRGDVFHVLDTLHPGPGQSH 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.0
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 27/119 (22%)
Query: 121 DKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIK--E 178
D T P LS G + S ++E +K + P E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--------PTEGFAADDE 53
Query: 179 LISEEELARR------------QAEAMRRIYQ---EERRRKYLQ--ELHDISSRRHTDN 220
+ EL + + ++ E YL+ ++H ++++ +N
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Score = 28.5 bits (63), Expect = 2.3
Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 65/196 (33%)
Query: 52 IYQEERRRKYLQELHDISSRRHTDNFT---------EL--SFKKGDIIFVRRQVDKNWYE 100
+ + ++ + L + T+ F EL F + +V V+ + +
Sbjct: 28 FIASQLQEQFNKILPE-----PTEGFAADDEPTTPAELVGKF----LGYVSSLVEPS--K 76
Query: 101 GEHNAMIGLFPFNYVE--IIPYDKIRTAPKKL--SEGQARAKFNFVAQTHLELSLVKESP 156
+ E + + I KL K + +
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----------- 125
Query: 157 HKYVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIY-----Q---EERRRKYLQE 208
Y+ + + +RP + S L R E ++ Q ++ Y +E
Sbjct: 126 --YITARIMA--KRPFDKK-----SNSALFRAVGEGNAQLVAIFGGQGNTDD----YFEE 172
Query: 209 LHDISSRRHTDNFTYR 224
L D+ TY
Sbjct: 173 LRDLYQ-------TYH 181
Score = 27.3 bits (60), Expect = 4.8
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 62/160 (38%)
Query: 1 MISPIQTTDNRPNSIVDS--EVTLQYRRPVRNEIKELISEEELARRQAEAMRRIY----- 53
++ TT + ++ + + +RP + S L R E ++
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKK-----SNSALFRAVGEGNAQLVAIFGG 162
Query: 54 Q---EERRRKYLQELHDISS----------RRHTDNFTELS---------FKKG-DIIFV 90
Q ++ Y +EL D+ + + +EL F +G +I+
Sbjct: 163 QGNTDD----YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-- 216
Query: 91 RRQVDKNWYEGEHNA--------------MIGLFPF-NYV 115
W E N +IG+ +YV
Sbjct: 217 ------EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize,
ISO-propanol, transcri; 1.78A {Homo sapiens} PDB:
3pmt_A*
Length = 54
Score = 25.7 bits (57), Expect = 2.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 82 FKKGDIIFVRRQVDKNWYEGE 102
+K GD F D +Y E
Sbjct: 2 WKPGDECFALYWEDNKFYRAE 22
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 26.8 bits (60), Expect = 6.3
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 115 VEIIPYDKIRTAPKKLSEGQARAKFNFV 142
+E+I D + TA ++L++ R + FV
Sbjct: 329 IEVISTDYLNTAMERLAKNDVR--YRFV 354
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 115 VEIIPYDKIRTAPKKLSEGQARAKFNFV 142
+++I I TA L+ G+A+ F +V
Sbjct: 315 IDLILGKDIDTAYHNLTHGKAK--FRYV 340
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics,
joint center for S genomics, JCSG; HET: MSE; 1.70A
{Bacteroides fragilis nctc 9343}
Length = 215
Score = 26.7 bits (58), Expect = 6.7
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 115 VEIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVK--ESPHKYVDSEVTLQYRRPV 172
VE+ PY +R A L + A F + V S ++V+ R
Sbjct: 97 VEVTPYYLVRDAQMTLEGNKVNASFKVEKVAGGGIDRVFFMLSTTQFVNDAEHNVDRYDE 156
Query: 173 RNEIKE 178
+ +
Sbjct: 157 TDNLDA 162
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 26.7 bits (60), Expect = 7.2
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 18 SEVTLQYRRPVRNEIKELISEEEL----------ARRQAEA-MRRIYQ 54
++V ++ RP++ + EEL A R A +R++ Q
Sbjct: 273 AQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQ 320
Score = 26.7 bits (60), Expect = 7.2
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 162 SEVTLQYRRPVRNEIKELISEEEL----------ARRQAEA-MRRIYQ 198
++V ++ RP++ + EEL A R A +R++ Q
Sbjct: 273 AQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQ 320
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 15/36 (41%)
Query: 41 LARRQAEAMRRIYQ---------------EERRRKY 61
LA+R AE R +++ +R Y
Sbjct: 127 LAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY 162
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 15/36 (41%)
Query: 185 LARRQAEAMRRIYQ---------------EERRRKY 205
LA+R AE R +++ +R Y
Sbjct: 127 LAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY 162
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 26.8 bits (60), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 41 LARRQAEAMRRIYQ---------------EERRRKY 61
LA+R +E M R+++ +ERR Y
Sbjct: 164 LAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY 199
Score = 26.8 bits (60), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 185 LARRQAEAMRRIYQ---------------EERRRKY 205
LA+R +E M R+++ +ERR Y
Sbjct: 164 LAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY 199
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
transcription; 1.80A {Drosophila melanogaster} PDB:
3nth_A* 3nti_A*
Length = 169
Score = 26.0 bits (57), Expect = 7.7
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 54 QEERRRKYLQELHDISSRRHTDNFTELSFKKGDIIFVRRQVDKNWYEG-----EHNAMIG 108
Q E L+++ D D K+G + + D+ +Y +
Sbjct: 20 QMESDVPALEQMTDKLLDAEQDLPAFSDLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCE 79
Query: 109 LFPFNYVEIIPYDKIRTAPKKLSE 132
+ ++ + R P++L++
Sbjct: 80 VHFIDFGNNAVTQQFRQLPEELAK 103
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 26.6 bits (59), Expect = 8.6
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 144 QTHLELSLVKESPHKYVDSEVTLQYRRPVRNEIKELISEEELARRQAEAMRRIYQEERRR 203
Q H+ L + H+ + + V LQ +EL + AR + E +
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930
Query: 204 KYLQE 208
LQ
Sbjct: 931 MQLQR 935
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics
consortium, antibody, SGC, protein immune system
complex; 2.05A {Homo sapiens}
Length = 77
Score = 24.8 bits (54), Expect = 8.7
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 82 FKKGDIIFVRRQVDKNWYEG--------EHNAMIGLFPFNYVEIIPYDKIRTAPKKLSE 132
+K GD F D +Y A++ + E + I+ + E
Sbjct: 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWE 76
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 26.5 bits (59), Expect = 9.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 18 SEVTLQYRRPVRNEIKELISEEEL----------ARRQAEA-MRRIYQ 54
+EV + +P+++ ELI EEL A R A ++++
Sbjct: 307 AEVVVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMEN 354
Score = 26.5 bits (59), Expect = 9.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 162 SEVTLQYRRPVRNEIKELISEEEL----------ARRQAEA-MRRIYQ 198
+EV + +P+++ ELI EEL A R A ++++
Sbjct: 307 AEVVVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMEN 354
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 26.3 bits (57), Expect = 9.4
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 79 ELSFKKGDIIFVRRQVDKNWYEGEH---NAMIGLFP 111
+SF+ D + V+ + + +W+ G IG P
Sbjct: 61 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIP 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.372
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,558,809
Number of extensions: 220109
Number of successful extensions: 1624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 365
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)