BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15852
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+E+F KYG + ++ + DP TGRSRGF F+ F+ S+++ I +G VI+
Sbjct: 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGK-VIDPK 76
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGG+ P+++ +E + F+Q+G II+ ++ DK Q + F F+T+
Sbjct: 77 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 136
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ V + +N D+++++K+A P+
Sbjct: 137 DSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D + L+E+F KYG + ++ + DP TGRSRGF F+ F+ S+++
Sbjct: 14 DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 60
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ + ++ ++ +F ++G + + ++ D + + + F F++FE S V +++K
Sbjct: 6 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT- 64
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++ K +D K+A P+ E
Sbjct: 65 QHILDGKVIDPKRAIPRDE 83
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+E +E FS++G I + L D +TG+SRGF F+ + +++++
Sbjct: 102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
II+ ++ DK Q + F F+T++ V + +N D+++++K+A P+
Sbjct: 114 IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 80
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 81 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 140
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 141 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 103 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 158
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 69 PHKVDGRVVEPKRAVSRED 87
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 124 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 148 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 247 KQKINDKEVDVKKATPK 263
K++ + V+ K+A +
Sbjct: 76 PHKVDGRVVEPKRAVSR 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 29 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 88
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 89 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 148
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 149 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 186
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 111 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 166
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 17 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 76
Query: 247 KQKINDKEVDVKKATPK 263
K++ + V+ K+A +
Sbjct: 77 PHKVDGRVVEPKRAVSR 93
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 29 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 72
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 132 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 186
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 86
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 87 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 147 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 184
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 109 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 247 KQKINDKEVDVKKATPK 263
K++ + V+ K+A +
Sbjct: 75 PHKVDGRVVEPKRAVSR 91
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 70
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 130 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 184
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F F+TF+ V ++ +N +V+KA K
Sbjct: 148 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 247 KQKINDKEVDVKKATPK 263
K++ + V+ K+A +
Sbjct: 76 PHKVDGRVVEPKRAVSR 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 26 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 85
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 86 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 145
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F F+TF+ V ++ +N +V+KA K
Sbjct: 146 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 181
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 108 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 163
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 14 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 73
Query: 247 KQKINDKEVDVKKATPK 263
K++ + V+ K+A +
Sbjct: 74 PHKVDGRVVEPKRAVSR 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 26 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 69
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 22 DTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEK 68
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 37/43 (86%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 26 KDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEK 68
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK 247
FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L +
Sbjct: 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQKE 74
Query: 248 QKINDKEVDVKKA 260
+++ + +D KKA
Sbjct: 75 HRLDGRVIDPKKA 87
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 10 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 44/59 (74%), Gaps = 5/59 (8%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K V+ + H +N
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-----VMDQKEHKLNG 67
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ V ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 247 KQKINDKEVDVKKA 260
+ K+N K +D K+A
Sbjct: 62 EHKLNGKVIDPKRA 75
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 247 KQKINDKEVDVKKA 260
+ + ++K A
Sbjct: 62 YHNVGLSKCEIKVA 75
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 56
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 56
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A
Sbjct: 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 4 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 63
Query: 247 KQKINDKEVDVKKA 260
+ + ++K A
Sbjct: 64 YHNVGLSKCEIKVA 77
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 12 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 58
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 16 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 58
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A
Sbjct: 27 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 77
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLS E++K +F QFG + + + +DK+ ++ + F F+TFE E +V + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 247 KQKINDKEVDVKKA 260
+IN+K V+ KKA
Sbjct: 62 FHEINNKMVECKKA 75
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 603 VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 158
V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 9 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
+ +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA
Sbjct: 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 72
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 73 FHDIMGKKVEVKRAEPR 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 107 GIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
GI H E EL+E+F K+G + V + D R RGF FI F+D +S+++A
Sbjct: 17 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 68
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EL+E+F K+G + V + D R RGF FI F+D +S+++A
Sbjct: 26 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 68
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 37 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 19 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 78
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 79 PHTLDGRNIDPKPCTPR 95
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 31 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 31 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 42 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
EE + F GEIE+ L D TG+S G+ F+ + D + EKA + + + I
Sbjct: 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
++V GL M +E++ F+Q+G II + + D+ + FI
Sbjct: 77 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136
Query: 233 FE 234
F+
Sbjct: 137 FD 138
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EE + F GEIE+ L D TG+S G+ F+ + D + EKA
Sbjct: 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+EL++ FS+YG I + D TG SRG FI F E+A
Sbjct: 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL++ FS+YG I + D TG SRG FI F E+A
Sbjct: 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 96 MEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 155
M++K ++ + + +E K F G+IE+ L D TG+S G+ F+ + D +
Sbjct: 1 MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 60
Query: 156 KA-SVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIET 214
KA + + + I ++V GL M +E++ F+Q+G II +
Sbjct: 61 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 120
Query: 215 EMPYDKSKSQRKNFCFITFE 234
+ D++ + FI F+
Sbjct: 121 RILLDQATGVSRGVGFIRFD 140
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E K F G+IE+ L D TG+S G+ F+ + D +KA
Sbjct: 19 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 62
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+E+++ FS+YG I + D TG SRG FI F E+A
Sbjct: 105 KEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 148
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E+++ FS+YG I + D TG SRG FI F E+A
Sbjct: 105 KEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 148
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 32 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 86
Query: 166 GNHVINN 172
H +++
Sbjct: 87 SRHELDS 93
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 88 RHELDSKTIDPKVAFPR 104
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 40 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 82
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 7 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 61
Query: 166 GNHVINN 172
H +++
Sbjct: 62 SRHELDS 68
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 247 KQKINDKEVDVKKA 260
+ +++ K +D K A
Sbjct: 63 RHELDSKTIDPKVA 76
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 57
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
+EL+ FS GE+E+ L D G S G+ F+ + + E+A + + + + I
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 76
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+++ GL M ++++ F++FG II + + D++ + FI
Sbjct: 77 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 136
Query: 233 FEHES 237
F+ S
Sbjct: 137 FDKRS 141
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++++ FS++G I N + D TG SRG AFI F E+A
Sbjct: 103 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 146
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++++ FS++G I N + D TG SRG AFI F E+A
Sbjct: 103 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 146
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 60
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
+EL+ FS GE+E+ L D G S G+ F+ + + E+A + + + + I
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 76
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+++ GL M ++++ F++FG II + + D++ + FI
Sbjct: 77 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 136
Query: 233 FEHES 237
F+ S
Sbjct: 137 FDKRS 141
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++++ FS++G I N + D TG SRG AFI F E+A
Sbjct: 103 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 146
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++++ FS++G I N + D TG SRG AFI F E+A
Sbjct: 103 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 146
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 17 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 60
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 107 GIVH-KITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G +H ITE+ L+ F +G+I+N+ L D +TGRS+G+ FI F D+E +A
Sbjct: 11 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 63
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 606 ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
ITE+ L+ F +G+I+N+ L D +TGRS+G+ FI F D+E +A
Sbjct: 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 63
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 107 GIVH-KITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G +H ITE+ L+ F +G IE++ L D TGRS+G+ FI F D+E +KA
Sbjct: 32 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 84
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 606 ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
ITE+ L+ F +G IE++ L D TGRS+G+ FI F D+E +KA
Sbjct: 38 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 84
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
++VG L + ++ ++ F FG I ++ D + K + FITF
Sbjct: 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 75
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF----EHESVVIDL 242
+FVG LSPE+ E+IK+ FA FG I + + D + + K + F++F + E+ ++ +
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 243 LKNPKQKINDKEVDVKKATPKP 264
Q + +++ AT KP
Sbjct: 78 ---GGQWLGGRQIRTNWATRKP 96
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 159
TE++K F+ +G+I + + D TG+S+G+ F+ F + E A V
Sbjct: 29 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 75
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 607 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653
TE++K F+ +G+I + + D TG+S+G+ F+ F + E A V
Sbjct: 29 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 75
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+FVG LSPE+ E+IKA FA FG I + + D + + K + F++F
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 64
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
TE++K F+ +G I + + D TG+S+G+ F+ F + E A
Sbjct: 29 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 607 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
TE++K F+ +G I + + D TG+S+G+ F+ F + E A
Sbjct: 29 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++ +L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 25 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 189 VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ 248
V GLS + +++ F+++G I + + YD+ + + F F+ FE+ +D K K+
Sbjct: 20 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKE 75
Query: 249 KINDKEVDVKK 259
+ N E+D ++
Sbjct: 76 RANGMELDGRR 86
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++ +L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 56 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 62 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 104
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 189 VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ 248
V GLS + +++ F+++G I + + YD+ + + F F+ FE+ +D K K+
Sbjct: 51 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKE 106
Query: 249 KINDKEVDVKK 259
+ N E+D ++
Sbjct: 107 RANGMELDGRR 117
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 22 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 81
Query: 166 G 166
G
Sbjct: 82 G 82
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 647
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+
Sbjct: 22 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 69
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF-EHESVV 239
+ V GL + ++++K +F+ FG ++ ++ D K F F+ F E+E+ V
Sbjct: 18 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 71
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++ +L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 22 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 28 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 70
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 189 VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ 248
V GLS + +++ F+++G I + + YD+ + + F F+ FE+ +D K K+
Sbjct: 17 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKE 72
Query: 249 KINDKEVDVKK 259
+ N E+D ++
Sbjct: 73 RANGMELDGRR 83
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++ +L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 25 LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 189 VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ 248
V GLS + +++ F+++G I + + YD+ + + F F+ FE+ +D K K+
Sbjct: 20 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN----VDDAKEAKE 75
Query: 249 KINDKEVDVKK 259
+ N E+D ++
Sbjct: 76 RANGMELDGRR 86
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHV-- 169
+ +++ F+ +G I+++ + D T + +GFAF+ ++ E+ + A + V+ G ++
Sbjct: 43 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102
Query: 170 --------INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
I+V + ++ D++IK+ F FG I + D +
Sbjct: 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKATPKPEPF 267
+ K + FI +E D + + + + + V KA P P
Sbjct: 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++K F +G+I++ TL DP TG+ +G+ FI ++ +S + A
Sbjct: 140 DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VG + E+ ++ I+ FA FG I +M +D + K F F+ +E
Sbjct: 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYE 78
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ +++ F+ +G I+++ + D T + +GFAF+ ++ E+ + A
Sbjct: 43 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 86
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 593 KNKMVSH-PGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+N MV++ P VD++ +L++ F +YG IE+V + D T +SRG+ F+ F+ S ++A
Sbjct: 43 RNLMVNYIPTTVDEV--QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 99 KNKMVSH-PGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+N MV++ P V ++ +L++ F +YG IE+V + D T +SRG+ F+ F+ S ++A
Sbjct: 43 RNLMVNYIPTTVDEV--QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + ++ ++ F+++G I E + D+ + + F F+TFE+ ID K+
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN----IDDAKDA 70
Query: 247 KQKINDKEVDVKK 259
+N K VD ++
Sbjct: 71 MMAMNGKSVDGRQ 83
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D + L++ FSKYG+I V + D T RSRGF F+ F++ + + A
Sbjct: 23 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ L++ FSKYG+I V + D T RSRGF F+ F++ + + A
Sbjct: 27 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
I+VG L E++K F+QFG + ++ YD+ + K F F+ + ESV + K
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLD 63
Query: 247 KQKINDKEVDVKKATPK 263
+ + V +A PK
Sbjct: 64 NTDFMGRTIRVTEANPK 80
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+E++KE FS++G++ NV L D T + +GF F+ +++ SV + IA+
Sbjct: 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV------EMQEESVSEAIAK 61
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 607 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E++KE FS++G++ NV L D T + +GF F+ ++ ES+ +A
Sbjct: 15 SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEA 58
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D+ E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 14 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 18 EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHV-- 169
+ +++ F+ +G I+++ + D T + +GFAF+ ++ E+ + A + V+ G ++
Sbjct: 28 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 87
Query: 170 --------INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
I+V + ++ D++IK+ F FG I + D +
Sbjct: 88 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPT 147
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKATPKPEPF 267
+ K + FI +E D + + + + + V KA P P
Sbjct: 148 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 194
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++K F +G+I++ TL DP TG+ +G+ FI ++ +S + A
Sbjct: 125 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 168
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VG + E+ ++ I+ FA FG I +M +D + K F F+ +E
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYE 63
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ +++ F+ +G I+++ + D T + +GFAF+ ++ E+ + A
Sbjct: 28 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 71
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D+ E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 13 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 17 EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D+ E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 15 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
E++ + S G + N+ + DP TGRS+G+AFI F+D ES A
Sbjct: 19 EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 62
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE
Sbjct: 15 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 62
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 19 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 70
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 96 MEAKNKMVSHPGIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 154
M +++ G+ ++ ++ L F +G+I ++ + D T + RGFAF+ F+ E
Sbjct: 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 67
Query: 155 EKA 157
A
Sbjct: 68 AAA 70
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE
Sbjct: 10 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 57
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 14 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 65
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 96 MEAKNKMVSHPGIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 154
M +++ G+ ++ ++ L F +G+I ++ + D T + RGFAF+ F+ E
Sbjct: 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 62
Query: 155 EKA 157
A
Sbjct: 63 AAA 65
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 55
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 52
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 9 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 60
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 19 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 60
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE
Sbjct: 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 113
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 70 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 121
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 80 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 121
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE----------------KA 157
+ +++ F+ +G I+++ D T + +GFAF+ ++ E+ + K
Sbjct: 27 DTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQXNSVXLGGRNIKV 86
Query: 158 SVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP 217
I + +I+ I+V + ++ D++IK+ F FG I +
Sbjct: 87 GRPSNIGQAQPIIDQLAEEARAFNR----IYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 142
Query: 218 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKATPKPEPF 267
D + + K + FI +E D + + + + + V KA P P
Sbjct: 143 RDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRVGKAVTPPXPL 193
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++K F +G+I++ TL DP TG+ +G+ FI ++ +S + A
Sbjct: 124 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 167
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
++VG + E+ ++ I+ FA FG I + +D + K F F+ +E
Sbjct: 15 VYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYE 62
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ +++ F+ +G I+++ D T + +GFAF+ ++ E+ + A
Sbjct: 27 DTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLA 70
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 110 HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
H L+++F +G+IE + +D TG+SRG+ F+ D + E+A
Sbjct: 28 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 610 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L+++F +G+IE + +D TG+SRG+ F+ D + E+A
Sbjct: 34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL D ++ +F FG+I E + D+ + + + F+T + K+P
Sbjct: 20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79
Query: 247 KQKINDKEVDVKKATPKPEP 266
I+ ++ +V A +P
Sbjct: 80 NPIIDGRKANVNLAYLGAKP 99
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 90 PHSIDGRVVEPKRAVAREE 108
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 34 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 85
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 34 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 85
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Query: 105 HPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE---D 161
HP + + L E FS G I ++ + D T RS G+A++ F+ E+A D
Sbjct: 19 HPDVTEAM---LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 162 VIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
VI I IF+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S K + F+ FE E+ + K +ND++V V + + E
Sbjct: 136 GS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 599 HPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
HP + + + L E FS G I ++ + D T RS G+A++ F+ E+A
Sbjct: 19 HPDVTEAM---LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPY---DKSKSQRKNFCFITFEHESVVIDLL 243
+FVGGL P++ ++EI A F +FG ++ + P+ KS K + F+ F+ ES V L+
Sbjct: 11 VFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 69
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Query: 105 HPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE---D 161
HP + + L E FS G I ++ + D T RS G+A++ F+ E+A D
Sbjct: 24 HPDVTEAM---LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 80
Query: 162 VIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
VI I IF+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 81 VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140
Query: 222 KSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S K + F+ FE E+ + K +ND++V V + + E
Sbjct: 141 GS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 599 HPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
HP + + + L E FS G I ++ + D T RS G+A++ F+ E+A
Sbjct: 24 HPDVTEAM---LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 73
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 161
EEL+ HF G + VT+ D +G +GFA+I F D ES+ + D
Sbjct: 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 68
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655
EEL+ HF G + VT+ D +G +GFA+I F D ES+ + D
Sbjct: 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 68
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF-EHESVVIDL 242
I+VG + EE++AHF G++ + DK K F +I F + ESV L
Sbjct: 9 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 158
+L FSKYG++ VT+ D +T +S+G AFI+F D +S + +
Sbjct: 32 DLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
+L FSKYG++ VT+ D +T +S+G AFI+F D +S + +
Sbjct: 32 DLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D +L+E F +G I + L D TG+S+GFAFI F E +A
Sbjct: 26 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 73
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+L+E F +G I + L D TG+S+GFAFI F E +A
Sbjct: 31 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 73
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
I V LS + ++ +++ F FG+I + DK+ Q K F FI+F
Sbjct: 18 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 64
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 96 MEAKNKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 154
MEA + + + + T EEL+ HF G + VT+ D +G +GFA+I F D ES+
Sbjct: 1 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 60
Query: 155 EKASVED 161
+ D
Sbjct: 61 RTSLALD 67
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 607 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655
EEL+ HF G + VT+ D +G +GFA+I F D ES+ + D
Sbjct: 19 AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 67
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
I+VG + EE++AHF G++ + DK K F +I F + V L
Sbjct: 8 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 67
Query: 247 KQKINDKEVDV-KKATPKP 264
+ +++ V K T +P
Sbjct: 68 ESLFRGRQIKVIPKRTNRP 86
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 603 VDKIT-----EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
VD +T + L+ F KYG + +V + D T SRGFAF+ F D E A
Sbjct: 52 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 105
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ L+ F KYG + +V + D T SRGFAF+ F D E A
Sbjct: 62 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 105
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ E ++ +KA F + G I E + D++ S+ + F FITFE+ + + K+
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT-SKSRGFAFITFENPADAKNAAKDM 68
Query: 247 KQK-INDKEVDVKKA 260
K ++ K + V++A
Sbjct: 69 NGKSLHGKAIKVEQA 83
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 589 IVEAKNKMVSHPGIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTE 646
+VEA + G +++ T E LK F K+G I V L D T +SRGFAFI F++
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 647 SLEKAS 652
+ A+
Sbjct: 60 DAKNAA 65
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 158
LK F K+G I V L D T +SRGFAFI F++ + A+
Sbjct: 24 LKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAA 65
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 603 VDKIT-----EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
VD +T + L+ F KYG + +V + +P+T RGFAF+ F D + A
Sbjct: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ L+ F KYG + +V + +P+T RGFAF+ F D + A
Sbjct: 28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG+ M + EI++ FA++G++ E ++ D++ K + F++F ++ +D+ K
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT-GVSKGYGFVSFYND---VDVQKIV 67
Query: 247 KQKIN 251
+ +IN
Sbjct: 68 ESQIN 72
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS 660
E++ F++YG ++ V + +D TG S+G+ F+ F + ++K + F+
Sbjct: 25 EIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQINFHG 75
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG+ M + EI++ FA++G++ E ++ D++ K + F++F ++ +D+ K
Sbjct: 13 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT-GVSKGYGFVSFYND---VDVQKIV 68
Query: 247 KQKIN 251
+ +IN
Sbjct: 69 ESQIN 73
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
E++ F++YG ++ V + +D TG S+G+ F+ F + ++K + F+
Sbjct: 26 EIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQINFH 75
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 603 VDKIT-----EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
VD +T + L+ F KYG + +V + D T SRGFAF+ F D E A
Sbjct: 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 128
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ L+ F KYG + +V + D T SRGFAF+ F D E A
Sbjct: 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 128
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG+ M + EI++ FA++G++ E ++ D++ K + F++F ++ +D+ K
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT-GVSKGYGFVSFYND---VDVQKIV 67
Query: 247 KQKIN 251
+ +IN
Sbjct: 68 ESQIN 72
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS 660
E++ F++YG ++ V + +D TG S+G+ F+ F + ++K + F+
Sbjct: 25 EIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQINFHG 75
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEG 166
++L F KYG I + D TGR RG AF+ + E ++A ++ +VI EG
Sbjct: 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVF-KDTESLEKASVEDVIAEGNHVINNX 173
EL F G I + D TG S G+AF+ F + +S V + I N +
Sbjct: 19 ELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
++V L + D+++ F ++G+I++ + DK + + F+ +
Sbjct: 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 138
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L F KYG I + D TGR RG AF+ + E ++A
Sbjct: 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 147
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 161
++L+ HFS G I +T+ D +G +G+A+I F + S++ A D
Sbjct: 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 98
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655
++L+ HFS G I +T+ D +G +G+A+I F + S++ A D
Sbjct: 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 98
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFK 149
+E++E F YGEI+N+ L D TG S+G+A + ++
Sbjct: 41 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 76
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFK 643
+E++E F YGEI+N+ L D TG S+G+A + ++
Sbjct: 41 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 76
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFK 149
+E++E F YGEI+N+ L D TG S+G+A + ++
Sbjct: 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 122
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFK 643
+E++E F YGEI+N+ L D TG S+G+A + ++
Sbjct: 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 122
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEG 166
++L F KYG I + D TGR RG AF+ + E ++A ++ +VI EG
Sbjct: 28 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 82
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L F KYG I + D TGR RG AF+ + E ++A
Sbjct: 28 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 71
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEG 166
++L F KYG I + D TGR RG AF+ + E ++A ++ +VI EG
Sbjct: 115 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 169
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINNX 173
EL F G I + D TG S G+AF+ F ++A V + I N +
Sbjct: 30 ELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVLNGITVRNKRLKVS 89
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
++V L + D+++ F ++G+I++ + DK + + F+ +
Sbjct: 90 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 149
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L F KYG I + D TGR RG AF+ + E ++A
Sbjct: 115 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 158
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+FVG + E +E++K F++ G ++ + YD+ + K + F ++ + + ++N
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 153
E+LK+ FS+ G + + L D TG+ +G+ F ++D E+
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 647
E+LK+ FS+ G + + L D TG+ +G+ F ++D E+
Sbjct: 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES------VVI 240
++VGGL ++ + + F Q G ++ T MP D+ Q + + F+ F E ++
Sbjct: 18 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 77
Query: 241 DLLKNPKQKINDKEVDVKKAT 261
D++ K+ K + V KA+
Sbjct: 78 DMI-----KLYGKPIRVNKAS 93
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH 235
+F+ L E D ++ + F FGN+I ++ DK S K F F++F++
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN 91
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166
+EL+E FS+YG++ +V + R FAF+ F D + + ED+I +G
Sbjct: 20 DELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKG 67
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+FVG + +M ++E++ F+Q+G++++ +P + F F+TF + + L
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSL 58
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D +EL+E FS+YG++ +V + R FAF+ F D + + ED+
Sbjct: 16 DMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDL 63
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 96 MEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 155
M++K ++ + + +E K F G+IE+ L D TG+S G+ F+ + D +
Sbjct: 1 MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 60
Query: 156 KA 157
KA
Sbjct: 61 KA 62
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E K F G+IE+ L D TG+S G+ F+ + D +KA
Sbjct: 19 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 62
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+F+G L E ++EI++ F Q+G ++E ++ KN+ F+ E ++ D ++N
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 61
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 115 ELKEHFSKYGEIENVTL-KSDPNTGRSRGFAFIVFKDTESLEKA 157
E++E FS +GE++ V L K TG RGF F+ F + +KA
Sbjct: 31 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 74
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 609 ELKEHFSKYGEIENVTL-KSDPNTGRSRGFAFIVFKDTESLEKA 651
E++E FS +GE++ V L K TG RGF F+ F + +KA
Sbjct: 31 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 74
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 16 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 67
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 16 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 67
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 12 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 59
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 57
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 57
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 14 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 65
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 57
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 160
E L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 30 ERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE 74
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 30 ERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE 74
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 30 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 81
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 30 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 81
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 73
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166
EEL++ F +YGE+ +V + R FAF+ F D + + ED+I +G
Sbjct: 26 EELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKG 73
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+FVG + +M EE++ F Q+G +++ +P + F F+TF + V L
Sbjct: 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-----KPFRAFAFVTFADDKVAQSL 64
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D EEL++ F +YGE+ +V + R FAF+ F D + + ED+
Sbjct: 22 DMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDL 69
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ ++ TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 29 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 80
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ + TEE + + F++YGEI+N+ L D TG +G+ + ++ + + A
Sbjct: 29 GVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 80
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE 234
+FV G+ E +E+I FA++G I + D+ K + + +E
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 72
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 357 SDENPTSRSHPSQNAIKLYLTRSSYREWGHVAD 389
S + T+ S SQ ++ Y+ R+SYR WGH+AD
Sbjct: 90 SSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLAD 122
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
+ V + +D +++ F QFG I++ E+ +++ S K F F+TFE+ +
Sbjct: 18 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSA 66
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
+ V + +D +++ F QFG I++ E+ +++ S K F F+TFE+ +
Sbjct: 32 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSA 80
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 19 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 62
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 19 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 62
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 100 NKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
N+++ + +KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 12 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 60
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 605 KIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 23 KITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 60
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 187 IFVGGLSPEMKDEEI-KAHFAQFGNIIETEMPYDKSKSQRKNFC-FITFEHESVVIDLLK 244
I + LS E+ DE + + F FG+I + +P + + N C F FE++ L+
Sbjct: 213 IXIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFXVFENKDSAERALQ 272
Query: 245 NPKQKINDKEVDVKKATPKP 264
+ + ++E+ V A KP
Sbjct: 273 XNRSLLGNREISVSLADKKP 292
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIET-EMPYDKSKSQRKNFCFITF 233
IF+G L PE+ ++ + F+ FG I++T ++ D K + FI F
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 55
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 600 PGIVDKITEELKEHFSKYGEI-ENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
P I +K+ L + FS +G I + + DP+TG S+G+AFI F ++ + A
Sbjct: 15 PEIDEKL---LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 64
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 116 LKEHFSKYGEI-ENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
L + FS +G I + + DP+TG S+G+AFI F ++ + A
Sbjct: 22 LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 64
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL+ FS GE+E+ L D G S G+ F+ + + E+A
Sbjct: 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS--QRKNFCFITF 233
+FVG + +++++ F Q+G + E + D+S++ Q K CF+TF
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS--QRKNFCFITF 233
+FVG + +++++ F Q+G + E + D+S++ Q K CF+TF
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSD--PNTGRSRGFAFIVFKDTESLEKASVE--------DVI 163
++L+E F +YG + + + D N +S+G F+ F KA++E V+
Sbjct: 18 KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT----RKAALEAQNALHNMKVL 73
Query: 164 AEGNHVIN-NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
+H I +F+G +S + + +I+ F+ FG I E +
Sbjct: 74 PGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
++VG LS +E+I F++ G+I + M DK K FCF+ +
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY 88
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 100 NKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
N+++ + +KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 18 NRILMIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 66
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 605 KIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 29 KITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 66
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 100 NKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
N+++ + +KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 66
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 605 KIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 29 KITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 66
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS--QRKNFCFITF 233
+FVG + +++++ F Q+G + E + D+S++ Q K CF+TF
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 114 EELKEHFSKYGEIENVTLKSD--PNTGRSRGFAFIVFKDTESLEKASVE----DVIAEGN 167
++L+E F +YG + + + D N +S+G F+ F ++ +A V+ +
Sbjct: 30 KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 89
Query: 168 HVIN-NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
H I +F+G +S + + +I+ F+ FG I E + R
Sbjct: 90 HPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR- 148
Query: 227 NFCFITFEHESVVIDLLK 244
F+TF ++ +K
Sbjct: 149 GCAFVTFTTRAMAQTAIK 166
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS--QRKNFCFITF 233
FVG + +++++ F Q+G + E + D+S++ Q K CF+TF
Sbjct: 7 FVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSD--PNTGRSRGFAFIVF---KDTESLEKASVEDVIAEGNH 168
++L+E F +YG + + + D N +S+G F+ F K + A + G H
Sbjct: 18 KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNXKVLPGXH 77
Query: 169 --VINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
+ +F+G +S + + +I+ F+ FG I E +
Sbjct: 78 HPIQXKPADSEKNNAVEDRKLFIGXISKKCTENDIRVXFSSFGQIEECRI 127
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH 235
+F+ L E D+++ F FGN++ ++ DK + K F F+++++
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 76
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+E+++ FS+YG I + D TG SRG FI F E+A
Sbjct: 16 KEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 59
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E+++ FS+YG I + D TG SRG FI F E+A
Sbjct: 16 KEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 59
>pdb|3S8S|A Chain A, Crystal Structure Of The Rrm Domain Of Human Setd1a
Length = 110
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 595 KMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653
K V+ + D + E LK+ KYGE+E V + P T + G A ++F T K +V
Sbjct: 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRG-AKETV 65
Query: 654 EDVYFYS 660
++++ S
Sbjct: 66 KNLHLTS 72
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDT 151
LK+ KYGE+E V + P T + G A ++F T
Sbjct: 23 LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST 58
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 112 ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVI-AEGNHV 169
ITEE K F +YGE V + D RGF FI LE ++ ++ AE +
Sbjct: 34 ITEEDFKRLFERYGEPSEVFINRD------RGFGFI------RLESRTLAEIAKAELDGT 81
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
I + V LSP + +E ++ F+QFG +
Sbjct: 82 ILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPV 123
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 100 NKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
N+++ + +KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 56
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 605 KIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
KIT EE+ + F KYG I + + + P T RG A++V++D
Sbjct: 19 KITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYED 56
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
+++ GL P D+++ +G I+ T+ DK+ ++ K + F+ F+ S
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 58
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 52 FDWVSSSFSENCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIVHK 111
FDW+ ++ SE ++ +++ + L + + +F+ LR +++A+ K++
Sbjct: 229 FDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVD-VAVLKARAKLLQ-----KY 282
Query: 112 ITEELKEHFSKYG-EIENVTLKSDPNTGR 139
+ +E KE + Y + VTL+ PN R
Sbjct: 283 LCDEQKELQALYALQALVVTLEQPPNLLR 311
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++LK F ++G+I +T+ D TG +G AF+ + + ES KA
Sbjct: 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 71
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++LK F ++G+I +T+ D TG +G AF+ + + ES KA
Sbjct: 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 71
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF-EHESVV 239
+F+G + + ++++K F +FG I E + D+ K F+T+ E ES +
Sbjct: 16 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 69
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
+FV ++ + + +++ F +G I M Y K + + + FI +EHE
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D +L+ F YG I+ + + +G+ RG+AFI ++ + A
Sbjct: 113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+L+ F YG I+ + + +G+ RG+AFI ++ + A
Sbjct: 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+FV LS +E+++ F+ +G + E P D + K F F+TF
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 57
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 160
E+L++ FS YG + + D T + +GFAF+ F E KA E
Sbjct: 23 EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L++ FS YG + + D T + +GFAF+ F E KA E
Sbjct: 23 EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 111 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 154
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 111 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 154
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 139 RSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKD 198
+ + FAF+ F+ + +A D I + +F+GGL + D
Sbjct: 51 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLND 110
Query: 199 EEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDV 257
+++K FG + + D + K + F + +V + ++ DK++ V
Sbjct: 111 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 170
Query: 258 KKAT 261
++A+
Sbjct: 171 QRAS 174
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 172
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 172
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 139 RSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKD 198
+ + FAF+ F+ + +A D I + +F+GGL + D
Sbjct: 49 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLND 108
Query: 199 EEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDV 257
+++K FG + + D + K + F + +V + ++ DK++ V
Sbjct: 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168
Query: 258 KKAT 261
++A+
Sbjct: 169 QRAS 172
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 16 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 59
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 16 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 59
>pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ VG +SP ++E++A F ++G +IE ++ K++ F+ E ++ ++
Sbjct: 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 63
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTG---RSRGFAFIVFKDTESLEKA 157
E LK FSK G I++ T+ N S GF F+ +K E +KA
Sbjct: 20 ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 66
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTG---RSRGFAFIVFKDTESLEKA 651
E LK FSK G I++ T+ N S GF F+ +K E +KA
Sbjct: 20 ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 66
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FV ++ + + +++ F +G I M Y K + + + FI +EHE + K+
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 247 -KQKINDKE--VDVKKA 260
+KI+ + VDV++
Sbjct: 165 DGKKIDGRRVLVDVERG 181
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D +L+ F YG I+ + + +G+ RG+AFI ++ + A
Sbjct: 113 DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE--KASVEDVI 163
G+ TEE LKE F VT D TG S+GF F+ F E + K ++ED
Sbjct: 22 GLSEDTTEETLKESFDGSVRARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 78
Query: 164 AEGNHV 169
+GN V
Sbjct: 79 IDGNKV 84
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
EL+ FS YG + V + +P GFAF+ F+D E A
Sbjct: 16 ELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 53
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EL+ FS YG + V + +P GFAF+ F+D E A
Sbjct: 16 ELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 53
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+FVG LSPE+ I A FA FG I + + D + + K + F++F
Sbjct: 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSF 55
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKN 245
IF+ L + ++ + F+ FGNI+ ++ D++ S K + F+ FE E+ + K
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 65
Query: 246 PKQKINDKEVDVKKATPKPE 265
+ND++V V + + E
Sbjct: 66 NGMLLNDRKVFVGRFKSRKE 85
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
G+ D ITE +L+ HF ++GEI +T+ + + AFI F ++ E A+
Sbjct: 19 GLGDTITETDLRNHFYQFGEIRTITVV------QRQQCAFIQFATRQAAEVAA 65
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVG +S +E+++ F + G +IE ++ K++ F+ E E+ K
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADA----KAA 59
Query: 247 KQKINDKEVDVKK 259
++N KEV K+
Sbjct: 60 IAQLNGKEVKGKR 72
>pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 24 DELKKSLHAIFSRFGQILDILV---SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
>pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
Length = 282
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 24 DELKKSLYAIFSQFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
>pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 23 DELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKN 245
IF+ L + ++ + F+ FGNI+ ++ D++ S K + F+ FE E+ + K
Sbjct: 14 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 71
Query: 246 PKQKINDKEVDVKKATPKPE 265
+ND++V V + + E
Sbjct: 72 NGMLLNDRKVFVGRFKSRKE 91
>pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 23 DELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77
>pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 21 DELKKSLHAIFSRFGQILDILV---SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 75
>pdb|3NS5|A Chain A, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
pdb|3NS5|B Chain B, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
Length = 91
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFI 146
+ + L FSK G++ N+ D TG+++GF F+
Sbjct: 25 LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 606 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFI 640
+ + L FSK G++ N+ D TG+++GF F+
Sbjct: 25 LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59
>pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
pdb|3NS6|B Chain B, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
Length = 100
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFI 146
+ + L FSK G++ N+ D TG+++GF F+
Sbjct: 25 LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 606 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFI 640
+ + L FSK G++ N+ D TG+++GF F+
Sbjct: 25 LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFV 59
>pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 20 DELKKSLHAIFSRFGQILDILV---SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 74
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E L E ++G+++ V + P+T S+G AF F E+ +K
Sbjct: 26 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 72
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK----ASVEDVIAEG 166
E L E ++G+++ V + P+T S+G AF F E+ +K AS+E AEG
Sbjct: 30 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLE---AEG 83
>pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 23 DELKKSLHAIFSRFGQILDILV---SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++LK F ++G I +T+ D TG +G AF+ + +S KA
Sbjct: 30 QDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 73
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++LK F ++G I +T+ D TG +G AF+ + +S KA
Sbjct: 30 QDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 73
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+FVG + + ++++K F +FG I E + D+ K F+T+
Sbjct: 18 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTY 64
>pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVYFY 659
D++ + L FS++G+I ++ + + + RG AF++FK+ S A S++ FY
Sbjct: 24 DELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,796,471
Number of Sequences: 62578
Number of extensions: 673926
Number of successful extensions: 2294
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1922
Number of HSP's gapped (non-prelim): 413
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)