BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15852
(661 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 128/160 (80%), Gaps = 6/160 (3%)
Query: 107 GIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TE EL++HF KYGEIE++ +K+DP TGRSRGFAFIVF +TE+++K S D
Sbjct: 62 GLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD---- 117
Query: 166 GNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
H+IN+KK++ KKAKA+ GKIFVGGL+ E+ DEEIK +F QFGNI+E EMP+DK KSQR
Sbjct: 118 -EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQR 176
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K FCFITF+ E VV DLLK PKQKI KEVDVK+ATPKPE
Sbjct: 177 KGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+E EMP+DK KSQRK FCFITF+ E VV DLLK PKQKI KEVDVK+ATPKPE
Sbjct: 162 IVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658
+EL++HF KYGEIE++ +K+DP TGRSRGFAFIVF +TE+++K S D +
Sbjct: 70 KELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI 120
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+FVGGLS E ++E++ HF ++G I + D + + F FI F + + +
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 246 PKQKINDKEVDVKKATPK 263
+ IN K+VD KKA +
Sbjct: 117 DEHIINSKKVDPKKAKAR 134
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD ASV+ V+ H ++ K
Sbjct: 65 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA-----ASVDKVLELKEHKLDGK 119
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSP+ +E+IK +F FG I E+P D ++R+ F
Sbjct: 120 LIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 179
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFIT+ E V LL++ +I + ++K A PK
Sbjct: 180 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
NKM D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 146 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 246 PKQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD ASVE V+ H ++ K
Sbjct: 44 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA-----ASVEKVLELKEHKLDGK 98
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSP+ +E+IK +F FG I E+P D ++R+ F
Sbjct: 99 LIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 158
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFIT+ E V LL++ +I + ++K A PK
Sbjct: 159 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S+EK
Sbjct: 40 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
KI A K + GK+F+GGLS + +++ + ++FG +++ + D + + F F+ F
Sbjct: 19 KINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLF 78
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ + V +L+ + K++ K +D K+A
Sbjct: 79 KDAASVEKVLELKEHKLDGKLIDPKRA 105
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 125 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 140 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD ASV+ V+ H ++ K
Sbjct: 162 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA-----ASVDKVLELKEHKLDGK 216
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSP+ +E+IK +F FG I E+P D ++R+ F
Sbjct: 217 LIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 276
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFIT+ E V LL++ +I + ++K A PK
Sbjct: 277 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
KI A K + GK+F+GGLS + +++ + ++FG +++ + D + + F F+ F
Sbjct: 137 KINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLF 196
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ + V +L+ + K++ K +D K+A
Sbjct: 197 KDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 258 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD SV+ V+ H ++ K
Sbjct: 48 KDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDA-----VSVDKVLETKEHKLDGK 102
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSPE +E+IK +F FG I E+P D ++R+ F
Sbjct: 103 LIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGF 162
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CF+T+ E V LL++ +I + ++K A PK
Sbjct: 163 CFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPK 197
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 44 DTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E++K++F +GEIEN+ L D T RGF F+ + D E ++K
Sbjct: 133 EQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ V +L+
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 246 PKQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 95 KEHKLDGKLIDPKRA 109
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCF+T+ E V LL++ +I + ++K A PK
Sbjct: 144 EIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPK 197
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD ASV+ V+ H ++ K
Sbjct: 43 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA-----ASVDKVLELKEHKLDGK 97
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSP+ +E+IK +F FG I E+P D ++R+ F
Sbjct: 98 LIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 157
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFIT+ E V LL++ +I + ++K A PK
Sbjct: 158 CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 39 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
KI A K + GK+F+GGLS + +++ + ++FG +++ + D + + F F+ F
Sbjct: 18 KINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLF 77
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ + V +L+ + K++ K +D K+A
Sbjct: 78 KDAASVDKVLELKEHKLDGKLIDPKRA 104
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 124 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 139 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD SV+ V+ H ++ K
Sbjct: 40 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDA-----VSVDKVLETKEHKLDGK 94
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSPE +E+IK +F FG I E+P D ++R+ F
Sbjct: 95 LIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGF 154
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CF+T+ E V LL++ +I + ++K A PK
Sbjct: 155 CFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPK 189
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 36 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 83
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
KI A K + GK+F+GGLS + +++ + ++FG +++ + D + + F F+ F
Sbjct: 15 KINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLF 74
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ V +L+ + K++ K +D K+A
Sbjct: 75 KDAVSVDKVLETKEHKLDGKLIDPKRA 101
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 595 KMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
K V G+ + TEE +K++F +GEIEN+ L D T RGF F+ + E ++K
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKK 167
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCF+T+ E V LL++ +I + ++K A PK
Sbjct: 136 EIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPK 189
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD SV+ V+ H ++ K
Sbjct: 40 KDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDA-----VSVDKVLETNEHKLDGK 94
Query: 174 KIEAKKAKAKSGK-----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA GK +FVGGLSPE +E+IK +F FG I E+P D ++R+ F
Sbjct: 95 LIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGF 154
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CF+T+ E V LL++ +I + ++K A PK
Sbjct: 155 CFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPK 189
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 36 DTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDK 82
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
KI A K + GK+F+GGLS + +++ + ++FG +++ + D + + F F+ F
Sbjct: 15 KINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLF 74
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ V +L+ + K++ K +D K+A
Sbjct: 75 KDAVSVDKVLETNEHKLDGKLIDPKRA 101
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCF+T+ E V LL++ +I + ++K A PK
Sbjct: 136 EIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPK 189
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE +K++F +GEIEN+ L D T RGF F+ + E ++K
Sbjct: 117 GLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 9/154 (5%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK V+ + H ++ +
Sbjct: 89 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK-----VLDQKEHRLDGR 143
Query: 174 KIEAKKAKAKSG----KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
I+ KKA A KIFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F
Sbjct: 144 VIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFV 203
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
FITF+ E V +L+ ++ + ++K A PK
Sbjct: 204 FITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 85 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 52/87 (59%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+I A K + +GK+FVGGLS + +++K +F +FG +++ + D + + + F FI F
Sbjct: 64 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ S V +L + +++ + +D KKA
Sbjct: 124 KDSSSVEKVLDQKEHRLDGRVIDPKKA 150
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 567 LTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKI----------TEELKEHFSK 616
L S + DQ +++ K M V KI E+++E+F +
Sbjct: 122 LFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQ 181
Query: 617 YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 182 FGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 184 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K V+ + H +N K
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-----VMDQKEHKLNGK 165
Query: 174 KIEAKKAKAKS-----GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA KIFVGGLSP+ +E+I+ +F FG + E+P D ++R+ F
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 225
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFITF+ E V +++ + + ++K A K
Sbjct: 226 CFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%)
Query: 165 EGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
EG+ + + EA A+ + K+F+GGLS + +++K +F++FG +++ + D +
Sbjct: 77 EGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ F F+ F+ V ++ + K+N K +D K+A
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 36.2 bits (82), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K V+ + H +N K
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-----VMDQKEHKLNGK 165
Query: 174 KIEAKKAKAKS-----GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA KIFVGGLSP+ +E+I+ +F FG + E+P D ++R+ F
Sbjct: 166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 225
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFITF+ E V +++ + + ++K A K
Sbjct: 226 CFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%)
Query: 165 EGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
EG+ + + EA A+ + K+F+GGLS + +++K +F++FG +++ + D +
Sbjct: 77 EGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ F F+ F+ V ++ + K+N K +D K+A
Sbjct: 137 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 36.2 bits (82), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K V+ + H +N K
Sbjct: 109 KDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK-----VMDQKEHKLNGK 163
Query: 174 KIEAKKAKAKS-----GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ K+AKA KIFVGGLSP+ +E+I+ +F FG + E+P D ++R+ F
Sbjct: 164 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 223
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
CFITF+ E V +++ + + ++K A K
Sbjct: 224 CFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 105 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 55/96 (57%)
Query: 165 EGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
EG+ + + EA A+ + K+F+GGLS + +++K +F++FG++++ + D +
Sbjct: 75 EGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ F F+ F+ V ++ + K+N K +D K+A
Sbjct: 135 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Score = 36.2 bits (82), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K
Sbjct: 205 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD ASVE V+ + H ++ +
Sbjct: 83 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA-----ASVEKVLDQKEHRLDGR 137
Query: 174 KIEAKKAKAKS----GKIFVGGLSPEMKDEE-IKAHFAQFGNIIETEMPYDKSKSQRKNF 228
I+ KKA A KIFVGGL+PE EE I+ +F +FG I E+P D ++R+ F
Sbjct: 138 VIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGF 197
Query: 229 CFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
FITF+ E V +L+ ++ + ++K A PK
Sbjct: 198 VFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 79 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+I A K + +GK+FVGGLS + +++K +F +FG +++ + D + + + F FI F
Sbjct: 58 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 117
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKA 260
+ + V +L + +++ + +D KKA
Sbjct: 118 KDAASVEKVLDQKEHRLDGRVIDPKKA 144
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E+++E+F ++GEIE + L DP + RGF FI FK+ E ++K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 14/159 (8%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+++F +YG+I + DP T RSRGF F+ F D S++K V+ +G H ++ K
Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK-----VLTQGTHELDGK 97
Query: 174 KIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
K++ K K ++ KIFVGGLS E++K++F QFG I + + +DK ++
Sbjct: 98 KVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNR 157
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+TF+ E VV + + +IN+K V+ KKA PK
Sbjct: 158 HRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+F+GGLS + E ++ +F ++G+I E + D + + + F F+TF + V +L
Sbjct: 29 GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLT 88
Query: 245 NPKQKINDKEVDVKKATPK 263
+++ K+VD K A P+
Sbjct: 89 QGTHELDGKKVDPKVAFPR 107
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E L+++F +YG+I + DP T RSRGF F+ F D S++K
Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRG 511
+DK ++ + F F+TF+ E VV + + +IN+K V+ KKA PK +
Sbjct: 151 FDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAA 210
Query: 512 GRGGRGGRMAG--------------------GYGGYGGYGGGYGELD 538
GR M G GY GY +G Y +D
Sbjct: 211 GRSAYDNIMWGLGTLPEGFPAAAYAAYAAGRGYSGYPSFGLPYPTVD 257
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 16/169 (9%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++K
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-----PASVDKVLGQPHHELDSK 89
Query: 174 KIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
I+ K K ++ KIFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE--PFGVRG 271
+ F F+TFE+E VV + + +IN+K V+ KKA PK P G RG
Sbjct: 150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 58 SFSENCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIV-------H 110
+F++ ++ +G+P H+ L + + + A+ KMV+ + +
Sbjct: 68 TFADPASVDKVLGQP-------HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120
Query: 111 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170
+ E++K++F ++G++E+ L D T R RGF F+ F++ + +EK V H I
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-----VCEIHFHEI 175
Query: 171 NNKKIEAKKAKAK 183
NNK +E KKA+ K
Sbjct: 176 NNKMVECKKAQPK 188
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
A ++ GK+F+GGLS + + ++ +F++FG I E + D + + + F F+TF
Sbjct: 13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP 72
Query: 237 SVVIDLLKNPKQKINDKEVDVKKATPK 263
+ V +L P +++ K +D K A P+
Sbjct: 73 ASVDKVLGQPHHELDSKTIDPKVAFPR 99
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ L+++FSK+GEI + DP T RSRGF F+ F D S++K
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 552 SFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIV-------D 604
+F++ ++ +G+P +H L + + + A+ KMV+ + +
Sbjct: 68 TFADPASVDKVLGQP-------HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120
Query: 605 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
+ E++K++F ++G++E+ L D T R RGF F+ F++ + +EK V +++F+
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK--VCEIHFH 173
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE--PFGVRG 505
+DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK P G RG
Sbjct: 143 FDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 16/169 (9%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++K
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-----PASVDKVLGQPHHELDSK 89
Query: 174 KIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
I+ K K ++ KIFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE--PFGVRG 271
+ F F+TFE+E VV + + +IN+K V+ KKA PK P G RG
Sbjct: 150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 58 SFSENCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIV-------H 110
+F++ ++ +G+P H+ L + + + A+ KMV+ + +
Sbjct: 68 TFADPASVDKVLGQP-------HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120
Query: 111 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170
+ E++K++F ++G++E+ L D T R RGF F+ F++ + +EK V H I
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-----VCEIHFHEI 175
Query: 171 NNKKIEAKKAKAK 183
NNK +E KKA+ K
Sbjct: 176 NNKMVECKKAQPK 188
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 176 EAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH 235
A ++ GK+F+GGLS + + ++ +F++FG I E + D + + + F F+TF
Sbjct: 12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
Query: 236 ESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ V +L P +++ K +D K A P+
Sbjct: 72 PASVDKVLGQPHHELDSKTIDPKVAFPR 99
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ L+++FSK+GEI + DP T RSRGF F+ F D S++K
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 552 SFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIV-------D 604
+F++ ++ +G+P +H L + + + A+ KMV+ + +
Sbjct: 68 TFADPASVDKVLGQP-------HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120
Query: 605 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
+ E++K++F ++G++E+ L D T R RGF F+ F++ + +EK V +++F+
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK--VCEIHFH 173
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE--PFGVRG 505
+DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK P G RG
Sbjct: 143 FDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 15/167 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNKKIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++K I+ K K ++ KIFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 246 PKQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 81 SRHELDSKTIDPKVAFPR 98
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 603 VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
V+ E++K++F ++G++++ L D T R RGF F+ F+ + +EK V +++F+
Sbjct: 118 VNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK--VCEIHFH 172
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 15/167 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNKKIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++K I+ K K ++ KIFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 246 PKQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 81 SRHELDSKTIDPKVAFPR 98
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 603 VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK V +++F+
Sbjct: 118 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK--VCEIHFH 172
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 15/167 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNKKIEAK---------KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++K I+ K K ++ KIFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 246 PKQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 81 SRHELDSKTIDPKVAFPR 98
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 603 VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK V +++F+
Sbjct: 118 VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK--VCEIHFH 172
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 98/163 (60%), Gaps = 12/163 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ TE+ L+E+F KYG + ++ + DP TGRSRGF F+ F EK S D + +
Sbjct: 165 GLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF------EKPSSVDEVVK 218
Query: 166 GNHVINNKKIEAKKA-----KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK 220
H+++ K I+ K+A + K+GKIFVGG+ P+++ +E + F+Q+G II+ ++ DK
Sbjct: 219 TQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 278
Query: 221 SKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
Q + F F+T++ V + +N D+++++K+A P+
Sbjct: 279 DTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D + L+E+F KYG + ++ + DP TGRSRGF F+ F+ S+++
Sbjct: 169 DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 215
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 170 INNKKIEAKKA--KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ K E KA +S K+F+GGL+ + ++ ++ +F ++G + + ++ D + + +
Sbjct: 142 VTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRG 201
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F++FE S V +++K + ++ K +D K+A P+ E
Sbjct: 202 FGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRDE 238
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+E +E FS++G I + L D +TG+SRGF F+ + +++++
Sbjct: 257 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 299
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
II+ ++ DK Q + F F+T++ V + +N D+++++K+A P+
Sbjct: 269 IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++L+EHF+ YGE+ + D TGR RGF F++F D SV D + + H I+ +
Sbjct: 20 DKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD------PSVLDRVLQEKHSIDTR 73
Query: 174 KIEAKKAKA-------------------------KSGKIFVGGLSPEMKDEEIKAHFAQF 208
+++ K+A + K+ KIFVGGL P + DEE + +F +
Sbjct: 74 EVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVY 133
Query: 209 GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
G + + + YD++ ++ + F F++F+ E V +L ++ K+V+VK+A PK
Sbjct: 134 GPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241
+ GK+FVGG+S E +++++ HF +G + + + DK + + F F+ F SV+
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 242 LLKNPKQKINDKEVDVKKATPKPE 265
+L+ K I+ +EVDVK+A + E
Sbjct: 63 VLQE-KHSIDTREVDVKRAMSREE 85
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
++L+EHF+ YGE+ + D TGR RGF F++F D L++
Sbjct: 20 DKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ + + YD++ ++ + F F++F+ E V +L ++ K+V+VK+A PK
Sbjct: 136 VTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
EE +++F YG + +V + D T R RGF F+ F ++++
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVD 165
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 436 EVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 495
EV++A+ M DK + + F F+ F SV+ +L+ K I+ +EVDVK+A
Sbjct: 31 EVSQAIVMR--------DKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAM 81
Query: 496 PKPE 499
+ E
Sbjct: 82 SREE 85
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 94/154 (61%), Gaps = 9/154 (5%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH----V 169
+ L+++F ++GE+ + T+ D TGRSRGF F+ FK+ + V +V+++ +H +
Sbjct: 177 DSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKC-----VNEVMSKEHHLDGKI 231
Query: 170 INNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
I+ K+ ++ + K+ K+FVGG+ + +EE + F QFG +++ + DK + + F
Sbjct: 232 IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+T+E+ES V + P I+ K V+VK+ATPK
Sbjct: 292 FVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+ GK+F+GGL+ E D+ ++ +F QFG +++ + D + + + F F+TF++ V ++
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 243 LKNPKQKINDKEVDVKKATPKPE 265
+ + ++ K +D K+A P+ E
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREE 242
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
+ L+++F ++GE+ + T+ D TGRSRGF F+ FK+
Sbjct: 177 DSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+++ + DK + + F F+T+E+ES V + P I+ K V+VK+ATPK
Sbjct: 273 VLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
D EE + F+++G + + TL D +TGR RGF F+ +++ ++E
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFK------DTESLEKASV 159
G+ ++ T+E LK+HF ++GEI +V + DP T RSRGF FI + D ++ V
Sbjct: 23 GLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKV 82
Query: 160 EDVIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +I +A A K+FVGG+ EM++ +++ +F Q+G ++ + D
Sbjct: 83 DGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVD 142
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
K +++ F F+ F+ V + + +I K +DVKKA PK
Sbjct: 143 KETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGL DE +K HF Q+G I++ + D + + F FIT+ +V D
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 246 PKQKINDKEVDVKKATPKPE 265
K++ + V+ K+A P+ E
Sbjct: 78 RPHKVDGRVVEPKRAVPRTE 97
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
E LK+HF ++GEI +V + DP T RSRGF FI + ++ A
Sbjct: 31 ESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
GI +++ E +L+++F +YG + + + D T + RGFAF+ F D + ++K
Sbjct: 114 GIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + DK +++ F F+ F+ V + + +I K +DVKKA PK
Sbjct: 134 VVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ ++ T+E LK HF K+G I +V + DP T RSRGF FI + + +++A +
Sbjct: 37 GLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
Query: 160 EDVIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + + I++ A A K+FVG L + ++ I+ +F FGNI++ + D
Sbjct: 97 DGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVID 156
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
K +++ F F+ F+ V ++ + ++N K VDVKKA PK
Sbjct: 157 KETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGL DE +KAHF ++GNI++ + D + + F FIT+ H S++ + K+
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 246 PKQKINDKEVDVKKATPKPE 265
KI+ + V+ K+A P+ +
Sbjct: 92 RPHKIDGRVVEPKRAVPRQD 111
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
E LK HF K+G I +V + DP T RSRGF FI + + +++A
Sbjct: 45 ENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Score = 39.3 bits (90), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
D + ++++F +G I ++ + D TG+ RGFAF+ F D + ++K ++
Sbjct: 132 DHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
I++ + DK +++ F F+ F+ V ++ + ++N K VDVKKA PK
Sbjct: 148 IVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 25/198 (12%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L +F ++G+I + + + +GRSRGF F+ F D +V V+
Sbjct: 13 GLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFAD-----PTNVNHVLQN 67
Query: 166 GNHVINNKKIEAKKA------KAKSG---KIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
G H ++ + I+ K K K G K+F+GGL + + +++ F ++G + E +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGR 276
YD+ K + + F F++FE ES V + +N K+V++KKA P R G
Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP----------RDGS 177
Query: 277 GGRGGRGGRMAGGYGGYG 294
GG+ + G YG G
Sbjct: 178 GGQNSNNSTVGGAYGKLG 195
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+FVGGLS E E + +F +FG+II+ + + + + F F+TF + V +L+
Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
Query: 245 NPKQKINDKEVDVKKATPK 263
N ++ + +D K P+
Sbjct: 67 NGPHTLDGRTIDPKPCNPR 85
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
++ E + YD+ K + + F F++FE ES V + +N K+V++KKA P
Sbjct: 121 KVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP------- 173
Query: 504 RGGRGGRGGRGGRGGRMAGGYGGYG 528
R G GG+ + G YG G
Sbjct: 174 ---RDGSGGQNSNNSTVGGAYGKLG 195
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G+ +TE +L+ F++YG++ V + D +SRGF F+ F++ S+E + E
Sbjct: 102 GLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
+ E L +F ++G+I + + + +GRSRGF F+ F D ++
Sbjct: 17 ETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+EHF ++G + + + DPN+ RSRGF F+ + T+ ++ A V+ K
Sbjct: 28 ESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPK 87
Query: 174 KIEAKKAKAKSG------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ +++ ++ G KIFVGG+ + +++ ++ +F Q+G I E+ D+ +++
Sbjct: 88 RAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRG 147
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV------RGGRGGRGGR 279
F F+TFE V ++ +N+ V+KA K E V RGG G G R
Sbjct: 148 FAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMASVSGSQRERGGSGNYGSR 205
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658
G + + TEE L+E+F +YG+IE + + +D +G+ RGFAF+ F+D +S++K ++ +
Sbjct: 110 GGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHT 169
Query: 659 YSN 661
+N
Sbjct: 170 VNN 172
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K EA + K+F+GGLS E DE ++ HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 LSTDEVDAAMTARPHKVDGRVVEPKRAVSRED 94
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+EHF ++G + + + DPN+ RSRGF F+ + T+ ++ A
Sbjct: 28 ESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFG 502
+E+IE + D+ +++ F F+TFE V ++ +N+ V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMAS 188
Query: 503 VRGGRGGRGGRGGRGGR 519
V G + RGG G G R
Sbjct: 189 VSGSQRERGGSGNYGSR 205
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ ++ T++ LK HF K+G I +V + DP T RSRGF FI + + ++ A +
Sbjct: 30 GLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKI 89
Query: 160 EDVIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E + ++I++ A A K+FVGGL + +E ++ +F FG I+ + D
Sbjct: 90 DGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSD 149
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K +++ F FI F+ V ++ I +K +DVKKA K +
Sbjct: 150 KDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQD 195
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGL D+ +KAHF ++GNI++ + D + + F FIT+ +S +ID +N
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS-QSYMIDNAQN 83
Query: 246 PK-QKINDKEVDVKKATPKPE 265
+ KI+ + V+ K+A P+ E
Sbjct: 84 ARPHKIDGRTVEPKRAVPRQE 104
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
G+ D EE L+E+F +G+I +V + SD +TG+ RGFAFI F D + ++K ++ +
Sbjct: 121 GLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI 180
Query: 660 SN 661
N
Sbjct: 181 KN 182
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 610 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
LK HF K+G I +V + DP T RSRGF FI + + ++ A
Sbjct: 40 LKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 15 GLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 69
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +FA++G I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V+ R
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 275 GRGG 278
GRGG
Sbjct: 190 GRGG 193
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
++ K + K+F+GGLS + +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 2 EREKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKRAVAREE 89
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F++YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 430 TDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEV 489
T+ H+ A +I E+ D+ +++ F F+TF+ V ++ IN
Sbjct: 111 TEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNA 170
Query: 490 DVKKATPKPEPFGVRGGRGGRGG 512
+V+KA + E V+ R GRGG
Sbjct: 171 EVRKALSRQEMQEVQSSRSGRGG 193
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 15 GLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+ +FS+YGE+ + + D T +SRGF F+ FKD V V+A H ++ +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC-----VGTVLASRPHTLDGR 78
Query: 174 KIEAKKA-----------------------KAKSGKIFVGGLSPEMKDEEIKAHFAQFGN 210
I+ K +KS KIFVGG+ + E++ +F +FG
Sbjct: 79 NIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGV 138
Query: 211 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 245 NPKQKINDKEVDVKKATPK 263
+ ++ + +D K TP+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EL+E+F K+G + V + D R RGF FI F+D +S+++A
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
E L+ +FS+YGE+ + + D T +SRGF F+ FKD +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+ +FS+YGE+ + + D T +SRGF F+ FKD V V+A H ++ +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC-----VGTVLASRPHTLDGR 78
Query: 174 KIEAKKA-----------------------KAKSGKIFVGGLSPEMKDEEIKAHFAQFGN 210
I+ K +KS KIFVGG+ + E++ +F +FG
Sbjct: 79 NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV 138
Query: 211 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 245 NPKQKINDKEVDVKKATPK 263
+ ++ + +D K TP+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EL+E+F K+G + V + D R RGF FI F+D +S+++A
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
E L+ +FS+YGE+ + + D T +SRGF F+ FKD +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+ +FS+YGE+ + + D T +SRGF F+ FKD V V+A H ++ +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC-----VGTVLASRPHTLDGR 78
Query: 174 KIEAKKA------------------------KAKSGKIFVGGLSPEMKDEEIKAHFAQFG 209
I+ K ++S KIFVGG+ + E+K +F +FG
Sbjct: 79 NIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFG 138
Query: 210 NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK------ 263
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQT 198
Query: 264 PEPFGVR--GGRGGRGGRGGRGGRMAGGYGGYGGYG 297
P P G G R + G G+ + GY G
Sbjct: 199 PGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQG 234
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 245 NPKQKINDKEVDVKKATPK 263
+ ++ + +D K TP+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
ELKE+F+++G + V + D R RGF FI F+D +S+++A
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK------P 498
+ E M YD K + + F FITFE E V + I K+V+VK+A P+ P
Sbjct: 140 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTP 199
Query: 499 EPFGVR--GGRGGRGGRGGRGGRMAGGYGGYGGYG 531
P G G R + G G+ + GY G
Sbjct: 200 GPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQG 234
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 81
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +F ++G I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V+ R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 GRGG 278
GRGG
Sbjct: 202 GRGG 205
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
K+ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEV 196
Query: 504 RGGRGGRGG 512
+ R GRGG
Sbjct: 197 QSSRSGRGG 205
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 15 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 69
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +F ++G I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V+ R
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 275 GRGG 278
GRGG
Sbjct: 190 GRGG 193
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
++ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKRAVAREE 89
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Score = 36.6 bits (83), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 184
Query: 504 RGGRGGRGG 512
+ R GRGG
Sbjct: 185 QSSRSGRGG 193
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 15 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 81
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +F ++G I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V+ R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 GRGG 278
GRGG
Sbjct: 202 GRGG 205
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
K+ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 36.2 bits (82), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 196
Query: 504 RGGRGGRGG 512
+ R GRGG
Sbjct: 197 QSSRSGRGG 205
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 81
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +F ++G I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V+ R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 GRGG 278
GRGG
Sbjct: 202 GRGG 205
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
K+ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 36.2 bits (82), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ D+ +++ F F+TF+ V ++ IN +V+KA + E V
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEV 196
Query: 504 RGGRGGRGG 512
+ R GRGG
Sbjct: 197 QSSRSGRGG 205
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F A V+ +A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM-----AEVDAAMAA 81
Query: 166 GNHVINNKKIEAKKAKAK--SGK---------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ SGK +FVGG+ + ++ ++ +F ++G I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ D+ +++ F F+TF+ V + IN +V+KA + E V+ R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 275 GRGG 278
GRGG
Sbjct: 202 GRGG 205
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
K+ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ D+ +++ F F+TF+ V + IN +V+KA + E V
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEV 196
Query: 504 RGGRGGRGG 512
+ R GRGG
Sbjct: 197 QSSRSGRGG 205
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (Fragment) OS=Rattus
norvegicus GN=Hnrnpc PE=2 SV=1
Length = 158
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 12/151 (7%)
Query: 158 SVEDVIAEGNHVINNKKIEAKKAKAKS-----GKIFVGGLSPEMKDEEIKAHFAQFGNII 212
SV+ V+ + H +N K I+ K+AKA KIFVGGLSP+ +E+I+ +F FG +
Sbjct: 2 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 61
Query: 213 ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP-----EPF 267
E+P D ++R+ FCFITF+ E V +++ + + ++K A K + +
Sbjct: 62 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW 121
Query: 268 GVRGGRGGRGGRGGRGGRMAGGYGGYGGYGG 298
G RGG GR GRGG GYG GG
Sbjct: 122 GSRGGFAGRA--RGRGGDQQSGYGKVSRRGG 150
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP----- 498
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K
Sbjct: 59 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ 118
Query: 499 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGG 532
+ +G RGG GR GRGG GYG GG
Sbjct: 119 QQWGSRGGFAGRA--RGRGGDQQSGYGKVSRRGG 150
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K ++ + H +
Sbjct: 48 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK-----IMEKKYHNVGLS 102
Query: 174 KIEAKKAKAK 183
K E K A +K
Sbjct: 103 KCEIKVAMSK 112
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 44 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 90
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G + + + DP + RSRGF F+ F ++ A +A
Sbjct: 15 GLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA-----MAT 69
Query: 166 GNHVINNKKIEAKKAKAKS-----------GKIFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ K+FVGG+ + ++ ++ +F ++G I
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ DK +++ F F+TF+ V ++ IN +V+KA K E V+ R
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 GRGGRGGRG 283
RGG G G
Sbjct: 190 NRGGNFGFG 198
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+E+F +YG+I+++ + +D +G+ RGFAF+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDK 156
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
++ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF +
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMN 61
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 62 EVDAAMATRPHTIDGRVVEPKRAVAREE 89
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I E+ DK +++ F F+TF+ V ++ IN +V+KA K E V
Sbjct: 125 KIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDV 184
Query: 504 RGGRGGRGGRGGRG 517
+ R RGG G G
Sbjct: 185 QNTRNNRGGNFGFG 198
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ ++ ++G + + + DP + RSRGF F+ F ++ A
Sbjct: 15 GLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNTTPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ + +V+KA PK E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 246 PKQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 75 TPHKVDGRVVEPKRAVSRED 94
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ + ++G++ + + DP + RSRGF F+ F ++ A ++
Sbjct: 15 GLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA-----MSA 69
Query: 166 GNHVINNKKIEAKKAKAKS-----------GKIFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H I+ + +E K+A A+ K+FVGG+ + ++ ++ +F ++G I T
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ DK +++ F F+TF V ++ IN +V+KA K E V+ R
Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 275 GRGGRGGRG 283
RGG G G
Sbjct: 190 NRGGNFGFG 198
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+E+F +YG+IE+ + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDK 156
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
++ K + K+F+GGLS E +E ++ + Q+G + + + D + + + F F+TF +
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMN 61
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + I+ + V+ K+A + E
Sbjct: 62 EVDAAMSARPHTIDGRVVEPKRAVAREE 89
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGV 503
+I TE+ DK +++ F F+TF V ++ IN +V+KA K E V
Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDV 184
Query: 504 RGGRGGRGGRGGRG 517
+ R RGG G G
Sbjct: 185 QNTRNNRGGNFGFG 198
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ + TEE L+ + ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 15 GLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNARPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNARPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNARPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPK 87
Query: 168 HVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ + + A KIFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ + V ++ +N +V+KA K E
Sbjct: 148 FAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNARPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN---HVI 170
E L+ HF ++G + + + DPNT RSRGF F+ + A+VE+V A N H +
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY--------ATVEEVDAAMNARPHKV 79
Query: 171 NNKKIEAKKAKAKSG-----------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + +E K+A ++ KIFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQE 185
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 174 KIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
K E+ K + K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
V + K++ + V+ K+A + +
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+ L+EHF ++G++ + + DP T RSRGF F+ + E ++ + V+ K
Sbjct: 41 DSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPK 100
Query: 174 KIEAKKAKAKSG------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ +++ A+ G KIFVGG+ + ++ ++ +F +G I E+ D+ +++
Sbjct: 101 RAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRG 160
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRG 280
F F+TF+ V ++ IN +VKKA K E R GRGG G
Sbjct: 161 FAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQTASAQR-GRGGGG 212
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F YG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 123 GGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS E D+ ++ HF Q+G + + + D + + F F+T+ V +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 246 PKQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 88 RPHKVDGRVVEPKRAVSRED 107
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L+EHF ++G++ + + DP T RSRGF F+ + E ++ +
Sbjct: 41 DSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVR 504
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 144 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQTAS 203
Query: 505 GGRGGRGGRG 514
RG RGG G
Sbjct: 204 AQRG-RGGGG 212
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ TEE LK + ++G++ +V + D T RSRGF FI + + +++A
Sbjct: 38 GLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRP--- 94
Query: 166 GNHVINNKKIEAKKAKAKS-----------GKIFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H+I+ K +EAK+A + K+FVGGL +E ++ +F QFGN++
Sbjct: 95 --HIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
++ DK+ +R+ F F+ F+ V + + I VDVKK+
Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGL+P +E +K + Q+G +++ + D + + + F FIT+ +V +N
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 246 PKQKINDKEVDVKKATPKPE 265
I+ K V+ K+A P+PE
Sbjct: 93 RPHIIDGKTVEAKRALPRPE 112
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ D EE L+E+F ++G + +V L +D TG+ RGFAF+ F D ++++KA
Sbjct: 129 GLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ TEE LK + ++G++ +V + D T RSRGF FI + + +++A
Sbjct: 38 GLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 107 GIVHKITEEL-KEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ T++L +E +S++GEI ++ + DP T RSRGF F+ F K V+ + +
Sbjct: 29 GLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSG-----KTEVDAAMKQ 83
Query: 166 GNHVINNKKIEAKKAKAKSGK-----------IFVGGLSPEMKDEEIKAHFAQFGNIIET 214
H+I+ K ++ K+A + K ++V G+ + ++ + +F ++G + ++
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKS 143
Query: 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRG 274
E+ DK+ + + F F+TF+ V + +N DV+K K E + R
Sbjct: 144 EIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNR- 202
Query: 275 GRGGRGGR 282
R RGGR
Sbjct: 203 DRETRGGR 210
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
KIFVGGL+ D+ ++ ++QFG I + + D + + + F F+TF ++ V +K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 246 PKQKINDKEVDVKKATPKPE 265
I+ K VD K+A P+ +
Sbjct: 84 RPHIIDGKTVDPKRAVPRDD 103
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEEL-KEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ T++L +E +S++GEI ++ + DP T RSRGF F+ F ++ A
Sbjct: 29 GLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G+ + TE+ L E+F+KYG + + D T + RGF F+ F D +S+++ ++
Sbjct: 120 GVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V+ K
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPK 108
Query: 174 KIEAKKAKAKSG------KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ +++ K G KIFVGG+ + ++ ++ +F ++G I E+ D+ +++
Sbjct: 109 RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 168
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ IN +VKKA K E
Sbjct: 169 FAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L+EHF K+G + + + DP T RSRGF F+ + E ++ A
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 39.7 bits (91), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLK 244
K+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 245 NPKQKINDKEVDVKKATPK 263
P K++ + V+ K+A +
Sbjct: 96 RP-HKVDGRVVEPKRAVSR 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,639,029
Number of Sequences: 539616
Number of extensions: 14224855
Number of successful extensions: 141942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 573
Number of HSP's that attempted gapping in prelim test: 79149
Number of HSP's gapped (non-prelim): 39962
length of query: 661
length of database: 191,569,459
effective HSP length: 124
effective length of query: 537
effective length of database: 124,657,075
effective search space: 66940849275
effective search space used: 66940849275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)