Query psy15852
Match_columns 661
No_of_seqs 380 out of 4357
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:01:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1E-45 2.3E-50 417.5 32.9 333 103-658 3-349 (562)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-39 8.6E-44 355.0 41.1 413 101-658 3-459 (481)
3 TIGR01628 PABP-1234 polyadenyl 100.0 9.5E-39 2.1E-43 360.9 29.2 325 32-498 2-365 (562)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-37 2.2E-42 333.0 32.5 317 184-659 3-335 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-37 7.6E-42 328.8 33.2 335 100-499 4-351 (352)
6 KOG0145|consensus 100.0 3.3E-38 7.2E-43 295.6 20.0 163 97-263 38-209 (360)
7 KOG0123|consensus 100.0 3.6E-36 7.7E-41 314.8 25.7 329 102-657 3-333 (369)
8 KOG0127|consensus 100.0 3.6E-35 7.7E-40 301.1 25.1 160 100-264 6-197 (678)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-34 3.4E-39 315.3 28.2 246 99-500 57-310 (578)
10 KOG0148|consensus 100.0 5.4E-34 1.2E-38 269.5 21.5 214 28-265 4-240 (321)
11 KOG0117|consensus 100.0 4.4E-33 9.6E-38 280.2 23.1 247 98-501 81-335 (506)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-32 7.6E-37 299.8 32.3 219 30-264 2-352 (481)
13 KOG0144|consensus 100.0 6.6E-33 1.4E-37 277.5 22.6 165 100-269 35-212 (510)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 8.2E-32 1.8E-36 294.1 24.9 256 151-657 19-291 (578)
15 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-30 4.8E-35 286.1 32.3 159 100-263 90-266 (457)
16 TIGR01659 sex-lethal sex-letha 100.0 2.3E-30 4.9E-35 270.0 25.7 163 99-265 106-277 (346)
17 KOG0127|consensus 100.0 1.8E-31 4E-36 273.9 16.6 227 31-265 6-380 (678)
18 TIGR01645 half-pint poly-U bin 100.0 1.2E-28 2.7E-33 269.3 33.4 162 101-266 108-287 (612)
19 KOG0117|consensus 100.0 2.2E-28 4.8E-33 246.4 23.9 241 15-268 63-336 (506)
20 KOG0123|consensus 100.0 7.8E-29 1.7E-33 259.6 21.3 317 32-500 3-352 (369)
21 KOG0148|consensus 100.0 3.6E-28 7.7E-33 230.1 19.1 233 100-501 6-242 (321)
22 KOG0110|consensus 100.0 3.4E-28 7.4E-33 258.4 19.6 349 98-660 226-682 (725)
23 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-26 2.5E-31 260.1 25.9 153 100-263 175-375 (509)
24 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.1E-26 4.5E-31 258.0 27.2 289 182-658 173-487 (509)
25 KOG0145|consensus 99.9 7.9E-27 1.7E-31 219.2 17.9 228 29-263 40-358 (360)
26 TIGR01659 sex-lethal sex-letha 99.9 5.3E-26 1.1E-30 237.3 22.0 170 182-500 105-278 (346)
27 KOG4211|consensus 99.9 8.3E-24 1.8E-28 216.7 32.5 443 103-654 14-491 (510)
28 KOG0144|consensus 99.9 1.2E-25 2.6E-30 225.6 13.5 229 29-265 33-506 (510)
29 TIGR01622 SF-CC1 splicing fact 99.9 2.4E-24 5.2E-29 238.0 23.5 224 29-263 88-448 (457)
30 KOG4212|consensus 99.9 2.8E-22 6E-27 201.1 29.1 79 184-263 44-124 (608)
31 KOG0131|consensus 99.9 1E-23 2.3E-28 189.1 11.2 162 100-265 9-179 (203)
32 KOG0124|consensus 99.9 1.4E-21 3.1E-26 191.9 23.7 160 102-265 115-292 (544)
33 TIGR01645 half-pint poly-U bin 99.9 2.8E-22 6.1E-27 219.6 18.4 181 182-500 105-287 (612)
34 KOG0110|consensus 99.9 2.3E-22 4.9E-27 214.3 14.8 250 98-498 383-694 (725)
35 KOG4205|consensus 99.9 1.6E-21 3.5E-26 197.1 14.2 167 98-269 5-182 (311)
36 KOG4211|consensus 99.9 4.6E-20 1E-24 189.4 22.0 313 185-654 11-340 (510)
37 KOG0147|consensus 99.8 6.7E-20 1.5E-24 190.8 16.0 157 104-265 183-360 (549)
38 KOG0109|consensus 99.8 2.9E-20 6.3E-25 178.3 10.8 150 101-270 4-157 (346)
39 KOG0146|consensus 99.8 1.5E-19 3.2E-24 171.0 14.3 94 172-266 2-104 (371)
40 KOG1190|consensus 99.8 4.1E-18 8.9E-23 170.5 24.6 396 99-659 27-476 (492)
41 KOG4205|consensus 99.8 1.5E-19 3.2E-24 183.0 13.6 178 183-503 5-182 (311)
42 KOG1456|consensus 99.8 1.8E-16 3.9E-21 156.9 32.0 398 101-659 32-471 (494)
43 KOG4212|consensus 99.8 3.6E-17 7.7E-22 164.7 23.5 155 99-259 43-290 (608)
44 KOG0146|consensus 99.8 4.7E-19 1E-23 167.7 9.0 164 98-266 18-368 (371)
45 KOG0147|consensus 99.8 2.4E-18 5.2E-23 179.2 14.2 179 185-498 180-359 (549)
46 KOG0124|consensus 99.7 4.6E-18 1E-22 167.3 11.2 177 184-498 113-291 (544)
47 KOG0131|consensus 99.7 8.2E-18 1.8E-22 151.4 10.3 167 183-497 8-177 (203)
48 PLN03134 glycine-rich RNA-bind 99.7 5.1E-17 1.1E-21 148.7 14.5 86 181-266 31-117 (144)
49 KOG0109|consensus 99.7 7.6E-17 1.7E-21 155.0 11.9 155 186-507 4-160 (346)
50 KOG1190|consensus 99.6 4.8E-14 1E-18 141.6 24.8 224 26-265 24-375 (492)
51 KOG0105|consensus 99.6 2.2E-14 4.9E-19 129.2 17.3 77 183-262 5-82 (241)
52 KOG0105|consensus 99.6 3.9E-14 8.4E-19 127.7 14.7 148 99-260 5-187 (241)
53 KOG1365|consensus 99.5 2E-14 4.4E-19 142.9 6.4 281 185-660 61-349 (508)
54 KOG0149|consensus 99.5 3E-14 6.4E-19 134.1 7.2 64 593-656 12-75 (247)
55 PLN03134 glycine-rich RNA-bind 99.5 9.6E-14 2.1E-18 127.1 9.4 80 99-182 34-113 (144)
56 KOG4206|consensus 99.5 1.1E-12 2.5E-17 123.4 14.0 148 102-261 11-220 (221)
57 KOG4307|consensus 99.4 4.7E-12 1E-16 134.8 17.5 156 102-264 314-515 (944)
58 KOG0149|consensus 99.4 3E-13 6.4E-18 127.4 7.1 79 184-262 12-90 (247)
59 KOG1548|consensus 99.4 8.6E-12 1.9E-16 123.4 15.5 164 92-264 126-353 (382)
60 KOG0122|consensus 99.4 7.6E-13 1.6E-17 125.0 7.7 67 592-658 188-254 (270)
61 PF00076 RRM_1: RNA recognitio 99.4 9.8E-13 2.1E-17 105.1 7.3 62 596-658 1-62 (70)
62 KOG0120|consensus 99.4 4.4E-12 9.5E-17 134.9 13.7 152 101-263 176-369 (500)
63 KOG0121|consensus 99.4 2.2E-12 4.8E-17 109.6 8.1 94 171-264 23-117 (153)
64 KOG0120|consensus 99.3 1.6E-11 3.4E-16 130.8 14.8 160 99-262 289-491 (500)
65 KOG0122|consensus 99.3 3.9E-12 8.4E-17 120.3 9.0 81 183-263 188-269 (270)
66 PF14259 RRM_6: RNA recognitio 99.3 5.7E-12 1.2E-16 100.8 7.5 60 596-656 1-60 (70)
67 KOG0107|consensus 99.3 1.2E-11 2.5E-16 111.3 10.1 77 184-265 10-87 (195)
68 PF00076 RRM_1: RNA recognitio 99.3 1.3E-11 2.9E-16 98.5 8.9 69 103-176 2-70 (70)
69 KOG0106|consensus 99.3 3.3E-12 7.1E-17 121.8 6.1 137 102-258 4-166 (216)
70 KOG4207|consensus 99.3 1.1E-11 2.4E-16 114.0 8.4 79 185-263 14-93 (256)
71 PLN03120 nucleic acid binding 99.3 2.1E-11 4.4E-16 119.4 10.7 78 184-264 4-81 (260)
72 KOG4206|consensus 99.3 1.8E-10 3.9E-15 108.7 16.0 78 185-265 10-92 (221)
73 KOG0125|consensus 99.2 1.2E-11 2.5E-16 121.6 7.2 98 164-263 71-174 (376)
74 PF14259 RRM_6: RNA recognitio 99.2 7.5E-11 1.6E-15 94.3 9.2 69 103-176 2-70 (70)
75 KOG0114|consensus 99.2 3.4E-11 7.4E-16 98.6 7.0 65 593-660 18-82 (124)
76 KOG0113|consensus 99.2 1.6E-10 3.4E-15 112.5 12.6 80 185-264 102-182 (335)
77 KOG0121|consensus 99.2 2.9E-11 6.3E-16 102.9 6.4 78 99-180 35-113 (153)
78 COG0724 RNA-binding proteins ( 99.2 1.7E-10 3.6E-15 118.2 12.4 131 100-234 116-275 (306)
79 KOG0125|consensus 99.2 4E-11 8.8E-16 117.8 6.3 80 98-183 94-174 (376)
80 KOG0113|consensus 99.2 6.9E-11 1.5E-15 114.9 7.8 80 97-180 99-178 (335)
81 KOG0126|consensus 99.1 5E-12 1.1E-16 114.0 -0.6 87 90-180 26-112 (219)
82 KOG0126|consensus 99.1 7.1E-12 1.5E-16 113.1 0.3 80 183-262 34-114 (219)
83 PLN03121 nucleic acid binding 99.1 2E-10 4.2E-15 110.7 9.6 77 185-264 6-82 (243)
84 KOG0130|consensus 99.1 1.3E-10 2.9E-15 99.7 7.4 82 185-266 73-155 (170)
85 KOG1457|consensus 99.1 4.6E-10 1E-14 104.6 11.6 141 98-246 33-268 (284)
86 KOG0114|consensus 99.1 2.6E-10 5.6E-15 93.5 8.6 78 184-264 18-96 (124)
87 KOG4207|consensus 99.1 8.8E-11 1.9E-15 108.2 6.5 77 101-181 15-91 (256)
88 KOG4307|consensus 99.1 6.1E-09 1.3E-13 111.5 21.1 164 445-660 337-501 (944)
89 KOG1457|consensus 99.1 1.2E-09 2.7E-14 101.9 13.7 82 184-265 34-120 (284)
90 KOG1456|consensus 99.1 1.5E-08 3.3E-13 101.2 22.2 214 31-263 32-363 (494)
91 smart00362 RRM_2 RNA recogniti 99.1 5.2E-10 1.1E-14 89.0 9.2 71 186-258 1-72 (72)
92 PLN03120 nucleic acid binding 99.1 2.2E-10 4.7E-15 112.3 8.0 74 100-181 5-78 (260)
93 PLN03213 repressor of silencin 99.1 2.4E-10 5.3E-15 117.5 8.6 75 185-263 11-88 (759)
94 smart00360 RRM RNA recognition 99.1 3.1E-10 6.8E-15 89.9 7.3 59 598-656 1-59 (71)
95 KOG0128|consensus 99.1 2.7E-11 5.9E-16 132.8 0.7 302 101-655 480-797 (881)
96 KOG1365|consensus 99.1 9.5E-10 2E-14 110.1 11.1 153 105-264 167-363 (508)
97 smart00360 RRM RNA recognition 99.0 8.5E-10 1.8E-14 87.4 8.4 70 189-258 1-71 (71)
98 KOG0130|consensus 99.0 1.7E-10 3.7E-15 99.1 4.4 76 102-181 74-150 (170)
99 KOG0107|consensus 99.0 3.1E-10 6.7E-15 102.3 6.0 74 100-182 10-84 (195)
100 KOG0116|consensus 99.0 1.7E-09 3.6E-14 114.2 11.6 81 185-265 289-369 (419)
101 KOG0111|consensus 99.0 3E-10 6.5E-15 105.4 4.9 84 183-266 9-93 (298)
102 KOG0129|consensus 99.0 4.8E-09 1E-13 109.8 14.1 161 99-261 259-452 (520)
103 smart00361 RRM_1 RNA recogniti 99.0 9.4E-10 2E-14 87.8 6.9 61 113-177 2-69 (70)
104 KOG0106|consensus 99.0 7.8E-10 1.7E-14 105.7 7.5 72 185-264 2-74 (216)
105 PLN03121 nucleic acid binding 99.0 1.1E-09 2.3E-14 105.7 8.2 73 101-181 7-79 (243)
106 smart00362 RRM_2 RNA recogniti 99.0 2E-09 4.4E-14 85.5 8.6 70 102-177 2-71 (72)
107 PLN03213 repressor of silencin 99.0 1.2E-09 2.7E-14 112.4 7.7 75 100-182 11-87 (759)
108 KOG0111|consensus 99.0 3.6E-10 7.8E-15 104.9 3.3 83 98-184 8-91 (298)
109 cd00590 RRM RRM (RNA recogniti 98.9 5.2E-09 1.1E-13 83.6 9.4 73 186-259 1-74 (74)
110 cd00590 RRM RRM (RNA recogniti 98.9 4E-09 8.8E-14 84.2 8.1 63 595-658 1-63 (74)
111 COG0724 RNA-binding proteins ( 98.9 4.3E-09 9.4E-14 107.7 9.6 79 184-262 115-194 (306)
112 KOG0108|consensus 98.9 3.2E-09 6.9E-14 112.9 8.7 81 185-265 19-100 (435)
113 PF13893 RRM_5: RNA recognitio 98.9 3.2E-09 6.9E-14 80.8 6.0 56 116-180 1-56 (56)
114 KOG0415|consensus 98.8 3.1E-09 6.7E-14 105.4 5.6 85 94-182 234-318 (479)
115 KOG0108|consensus 98.8 4.6E-09 1E-13 111.6 6.6 80 100-183 19-98 (435)
116 smart00361 RRM_1 RNA recogniti 98.8 1.2E-08 2.6E-13 81.4 7.5 60 198-257 2-69 (70)
117 KOG0128|consensus 98.8 1.1E-09 2.3E-14 120.5 0.7 146 101-263 669-815 (881)
118 KOG4210|consensus 98.8 6.7E-09 1.5E-13 105.6 6.1 163 100-266 88-267 (285)
119 PF13893 RRM_5: RNA recognitio 98.8 2.5E-08 5.3E-13 75.8 7.7 55 201-260 1-56 (56)
120 KOG4208|consensus 98.7 2.8E-08 6.1E-13 92.4 6.4 69 592-660 48-118 (214)
121 KOG0415|consensus 98.7 2E-08 4.3E-13 99.8 5.4 84 181-264 236-320 (479)
122 KOG4208|consensus 98.7 2.9E-08 6.3E-13 92.3 5.9 79 97-179 46-126 (214)
123 KOG4660|consensus 98.7 5.3E-07 1.1E-11 95.6 15.8 147 98-260 74-247 (549)
124 KOG4454|consensus 98.7 5.8E-09 1.2E-13 97.2 0.9 131 100-245 9-144 (267)
125 KOG0153|consensus 98.6 1.6E-07 3.5E-12 93.6 8.2 73 185-263 229-303 (377)
126 KOG1548|consensus 98.5 1E-06 2.2E-11 88.0 13.1 194 387-659 132-338 (382)
127 KOG0226|consensus 98.5 4E-08 8.6E-13 93.9 2.7 143 117-264 117-271 (290)
128 KOG0132|consensus 98.5 1.9E-07 4.2E-12 101.8 7.4 75 185-265 422-497 (894)
129 KOG0112|consensus 98.4 1.2E-07 2.7E-12 105.0 4.1 157 98-265 371-533 (975)
130 KOG0226|consensus 98.4 9.1E-07 2E-11 84.7 7.6 68 593-660 190-257 (290)
131 KOG0132|consensus 98.3 1.2E-06 2.6E-11 95.8 6.1 97 100-206 422-528 (894)
132 KOG0153|consensus 98.2 1.6E-06 3.4E-11 86.8 5.9 75 99-182 227-302 (377)
133 KOG4661|consensus 98.2 2.4E-06 5.3E-11 89.9 7.3 80 185-264 406-486 (940)
134 KOG0533|consensus 98.2 2.7E-06 5.8E-11 83.5 6.4 64 593-657 83-146 (243)
135 KOG4660|consensus 98.2 7.9E-05 1.7E-09 79.5 17.1 68 184-256 75-143 (549)
136 KOG0116|consensus 98.2 7.6E-06 1.7E-10 86.8 9.6 78 391-498 291-368 (419)
137 KOG4210|consensus 98.1 6.2E-06 1.3E-10 84.1 7.1 178 184-500 88-267 (285)
138 KOG0533|consensus 98.1 3.5E-05 7.5E-10 75.8 11.6 83 182-265 81-164 (243)
139 KOG4454|consensus 98.1 2.2E-06 4.7E-11 80.3 2.6 79 180-260 5-84 (267)
140 KOG4209|consensus 98.0 1.3E-05 2.7E-10 79.1 7.7 81 183-263 100-180 (231)
141 KOG0129|consensus 98.0 5.9E-05 1.3E-09 79.7 12.6 65 590-654 367-432 (520)
142 KOG4661|consensus 98.0 8.1E-06 1.8E-10 86.1 6.1 78 102-183 408-485 (940)
143 PF04059 RRM_2: RNA recognitio 97.9 3.2E-05 7E-10 65.0 7.5 63 594-656 2-66 (97)
144 PF04059 RRM_2: RNA recognitio 97.9 5.1E-05 1.1E-09 63.8 8.2 78 185-262 2-86 (97)
145 KOG4676|consensus 97.9 6.9E-06 1.5E-10 83.2 3.3 141 102-251 9-214 (479)
146 KOG0151|consensus 97.7 6.5E-05 1.4E-09 81.7 6.5 92 86-181 160-255 (877)
147 KOG1995|consensus 97.7 0.00013 2.7E-09 74.1 8.0 83 183-265 65-156 (351)
148 KOG4209|consensus 97.6 4.6E-05 1E-09 75.1 4.4 78 99-181 100-178 (231)
149 KOG0151|consensus 97.6 9E-05 1.9E-09 80.7 6.2 85 181-265 171-259 (877)
150 KOG4849|consensus 97.6 0.00013 2.8E-09 72.9 6.8 76 185-260 81-159 (498)
151 KOG4676|consensus 97.5 3E-05 6.5E-10 78.7 1.4 76 186-261 9-87 (479)
152 KOG2193|consensus 97.5 2.2E-05 4.7E-10 80.3 0.2 149 101-264 3-158 (584)
153 PF08777 RRM_3: RNA binding mo 97.4 0.00036 7.9E-09 60.1 5.9 56 594-655 2-57 (105)
154 PF11608 Limkain-b1: Limkain b 97.4 0.00067 1.5E-08 54.4 6.7 68 186-263 4-77 (90)
155 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00048 1E-08 51.3 5.3 52 594-652 2-53 (53)
156 PF08777 RRM_3: RNA binding mo 97.2 0.0005 1.1E-08 59.2 5.3 67 186-258 3-75 (105)
157 COG5175 MOT2 Transcriptional r 97.0 0.00078 1.7E-08 67.2 4.2 87 102-192 117-212 (480)
158 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0025 5.3E-08 47.5 5.3 52 185-243 2-53 (53)
159 KOG1995|consensus 96.8 0.0017 3.8E-08 66.1 5.2 83 99-185 66-156 (351)
160 KOG0115|consensus 96.8 0.0018 3.8E-08 62.9 4.9 99 162-263 11-114 (275)
161 KOG0112|consensus 96.8 0.0017 3.8E-08 73.0 5.5 140 29-181 371-529 (975)
162 KOG2314|consensus 96.7 0.0033 7.2E-08 67.2 6.9 70 98-172 56-132 (698)
163 PF11608 Limkain-b1: Limkain b 96.5 0.004 8.7E-08 50.0 4.4 67 100-180 2-74 (90)
164 KOG2193|consensus 96.5 0.00069 1.5E-08 69.6 -0.0 75 185-265 2-78 (584)
165 KOG2314|consensus 96.5 0.0042 9.1E-08 66.4 5.6 64 593-657 58-127 (698)
166 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.032 7E-07 47.3 8.1 78 184-262 6-91 (100)
167 KOG0115|consensus 96.1 0.012 2.6E-07 57.3 6.0 60 594-654 32-91 (275)
168 KOG1855|consensus 96.1 0.0056 1.2E-07 63.5 4.0 64 593-656 231-307 (484)
169 COG5175 MOT2 Transcriptional r 96.1 0.013 2.9E-07 58.7 6.4 79 185-263 115-203 (480)
170 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.074 1.6E-06 45.2 7.3 67 103-180 9-89 (100)
171 KOG1855|consensus 95.3 0.027 5.9E-07 58.6 5.3 67 98-168 229-309 (484)
172 PF08675 RNA_bind: RNA binding 95.2 0.083 1.8E-06 42.6 6.7 53 97-157 6-58 (87)
173 KOG4849|consensus 95.0 0.015 3.1E-07 58.7 2.6 77 97-177 77-156 (498)
174 KOG3152|consensus 95.0 0.017 3.8E-07 56.1 2.9 75 99-177 73-160 (278)
175 KOG2202|consensus 94.9 0.0082 1.8E-07 58.5 0.3 61 114-179 83-144 (260)
176 PF08675 RNA_bind: RNA binding 94.8 0.07 1.5E-06 43.0 5.3 52 596-655 11-62 (87)
177 KOG3973|consensus 94.6 0.22 4.7E-06 50.5 9.6 14 299-312 378-391 (465)
178 KOG3152|consensus 94.3 0.027 5.9E-07 54.8 2.3 71 183-253 73-156 (278)
179 KOG2591|consensus 94.2 0.085 1.8E-06 56.7 6.1 88 162-257 154-246 (684)
180 KOG2135|consensus 94.2 0.03 6.6E-07 59.0 2.7 72 187-264 375-447 (526)
181 PF08952 DUF1866: Domain of un 93.8 0.26 5.5E-06 44.6 7.3 75 182-264 25-108 (146)
182 KOG2202|consensus 93.7 0.032 6.9E-07 54.5 1.6 64 199-263 83-148 (260)
183 KOG1996|consensus 93.3 0.18 4E-06 50.0 6.1 65 112-180 299-364 (378)
184 PF08952 DUF1866: Domain of un 93.1 0.19 4.1E-06 45.4 5.5 56 114-182 51-106 (146)
185 KOG1996|consensus 93.1 0.23 5E-06 49.3 6.5 64 198-261 300-365 (378)
186 PF10309 DUF2414: Protein of u 93.1 0.38 8.3E-06 36.8 6.2 55 184-246 5-62 (62)
187 PF15023 DUF4523: Protein of u 92.1 0.46 9.9E-06 42.4 6.3 70 185-261 87-160 (166)
188 KOG0921|consensus 91.7 1 2.3E-05 51.8 10.1 13 138-150 899-911 (1282)
189 KOG0921|consensus 90.7 2 4.2E-05 49.7 11.0 6 300-305 1203-1208(1282)
190 KOG2135|consensus 90.0 0.13 2.7E-06 54.5 1.0 72 111-197 385-456 (526)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 89.4 0.48 1E-05 44.9 4.4 63 593-655 7-75 (176)
192 KOG4285|consensus 88.8 0.99 2.1E-05 45.3 6.1 75 185-266 198-273 (350)
193 PF10309 DUF2414: Protein of u 88.3 1.9 4E-05 33.1 6.0 47 103-157 8-58 (62)
194 KOG2068|consensus 88.1 0.21 4.6E-06 50.9 1.1 85 103-192 81-172 (327)
195 KOG2591|consensus 87.2 1.8 3.8E-05 47.1 7.2 67 98-171 173-245 (684)
196 PF15023 DUF4523: Protein of u 85.8 1.4 3.1E-05 39.3 4.8 55 593-654 86-144 (166)
197 PF07292 NID: Nmi/IFP 35 domai 84.8 1.7 3.6E-05 36.0 4.4 24 591-614 50-73 (88)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 84.1 1.8 3.9E-05 41.1 5.1 72 99-174 7-84 (176)
199 PF07292 NID: Nmi/IFP 35 domai 82.7 1.2 2.5E-05 36.9 2.8 57 144-205 1-73 (88)
200 KOG2416|consensus 81.5 0.64 1.4E-05 50.7 1.0 59 101-169 445-505 (718)
201 KOG2068|consensus 80.7 0.86 1.9E-05 46.6 1.6 81 185-265 78-165 (327)
202 KOG2416|consensus 80.3 1.3 2.7E-05 48.5 2.7 72 185-262 445-521 (718)
203 KOG4285|consensus 78.7 6.7 0.00015 39.6 7.0 63 100-173 197-259 (350)
204 PF14111 DUF4283: Domain of un 77.6 6.9 0.00015 35.8 6.6 99 110-218 28-139 (153)
205 PF07576 BRAP2: BRCA1-associat 77.6 13 0.00028 32.2 7.7 68 99-172 12-81 (110)
206 PF04847 Calcipressin: Calcipr 77.4 4.7 0.0001 38.5 5.4 59 112-180 8-68 (184)
207 KOG3973|consensus 71.0 4.6 0.0001 41.3 3.7 14 31-44 150-163 (465)
208 PRK11634 ATP-dependent RNA hel 70.9 23 0.00049 41.0 9.9 37 226-263 526-563 (629)
209 PF03468 XS: XS domain; Inter 68.0 4.6 9.9E-05 35.4 2.7 51 595-648 10-69 (116)
210 KOG4574|consensus 65.4 4.1 9E-05 46.6 2.3 74 186-265 300-376 (1007)
211 KOG4574|consensus 63.1 4.5 9.7E-05 46.3 2.1 61 591-657 296-356 (1007)
212 PF04847 Calcipressin: Calcipr 61.0 21 0.00046 34.0 6.0 61 197-263 8-71 (184)
213 PF07576 BRAP2: BRCA1-associat 59.8 40 0.00086 29.3 6.9 56 189-246 18-74 (110)
214 KOG2253|consensus 59.2 4.8 0.0001 44.9 1.5 73 94-179 35-107 (668)
215 PF03880 DbpA: DbpA RNA bindin 55.7 49 0.0011 26.3 6.4 58 110-180 12-74 (74)
216 KOG2253|consensus 53.4 16 0.00034 41.1 4.1 59 591-658 38-96 (668)
217 PRK14548 50S ribosomal protein 51.2 51 0.0011 27.1 5.8 60 594-656 21-82 (84)
218 PF03880 DbpA: DbpA RNA bindin 48.9 71 0.0015 25.3 6.4 57 195-260 12-74 (74)
219 KOG2891|consensus 45.5 18 0.00038 36.0 2.7 48 592-639 148-212 (445)
220 PF07530 PRE_C2HC: Associated 44.9 47 0.001 26.0 4.6 63 199-264 2-66 (68)
221 PF11767 SET_assoc: Histone ly 44.9 96 0.0021 24.2 6.2 54 110-176 11-64 (66)
222 PF11767 SET_assoc: Histone ly 43.4 56 0.0012 25.5 4.7 48 601-657 7-55 (66)
223 PF05918 API5: Apoptosis inhib 42.6 8.2 0.00018 43.2 0.0 7 118-124 313-319 (556)
224 PRK11634 ATP-dependent RNA hel 42.5 1.3E+02 0.0028 34.8 9.7 34 461-495 527-561 (629)
225 smart00596 PRE_C2HC PRE_C2HC d 39.9 56 0.0012 25.6 4.2 63 199-264 2-66 (69)
226 PF15513 DUF4651: Domain of un 39.1 31 0.00068 26.4 2.6 21 607-627 8-28 (62)
227 KOG0804|consensus 35.3 86 0.0019 33.8 6.0 67 100-172 75-142 (493)
228 KOG3424|consensus 33.2 1.2E+02 0.0027 26.3 5.5 49 107-156 31-84 (132)
229 KOG0804|consensus 32.7 89 0.0019 33.7 5.7 66 184-251 74-141 (493)
230 PF10567 Nab6_mRNP_bdg: RNA-re 32.0 61 0.0013 32.9 4.1 58 100-157 16-80 (309)
231 TIGR03636 L23_arch archaeal ri 30.7 1.7E+02 0.0036 23.6 5.7 59 595-656 15-75 (77)
232 KOG4483|consensus 30.7 78 0.0017 33.5 4.7 54 185-245 392-446 (528)
233 KOG4213|consensus 28.9 57 0.0012 30.6 3.1 59 591-654 109-169 (205)
234 PRK14548 50S ribosomal protein 28.5 2E+02 0.0043 23.6 5.9 47 108-157 29-77 (84)
235 PTZ00146 fibrillarin; Provisio 27.7 89 0.0019 32.2 4.6 15 612-626 257-273 (293)
236 PF10567 Nab6_mRNP_bdg: RNA-re 26.5 93 0.002 31.7 4.3 78 184-261 15-106 (309)
237 PF03468 XS: XS domain; Inter 25.7 95 0.0021 27.2 3.8 43 111-156 29-71 (116)
238 KOG4008|consensus 25.7 33 0.00073 33.5 1.1 48 169-216 25-72 (261)
239 KOG3875|consensus 24.9 79 0.0017 32.4 3.5 10 529-538 88-97 (362)
240 PF11823 DUF3343: Protein of u 24.5 2.4E+02 0.0053 22.1 5.7 61 143-209 3-63 (73)
241 KOG2318|consensus 24.4 1.8E+02 0.0039 32.5 6.3 70 97-171 172-294 (650)
242 KOG2891|consensus 23.7 1.8E+02 0.0039 29.1 5.7 34 185-218 150-195 (445)
243 PRK10590 ATP-dependent RNA hel 23.6 4.5E+02 0.0097 28.9 9.7 8 226-233 342-349 (456)
244 TIGR03636 L23_arch archaeal ri 22.7 4.1E+02 0.0089 21.4 6.8 48 107-157 21-70 (77)
245 PTZ00146 fibrillarin; Provisio 22.7 1.2E+02 0.0025 31.4 4.4 17 637-653 205-221 (293)
246 KOG4410|consensus 22.0 98 0.0021 31.2 3.5 46 185-236 331-377 (396)
247 PRK01178 rps24e 30S ribosomal 21.7 2.5E+02 0.0054 23.9 5.4 47 109-156 29-80 (99)
248 PF07530 PRE_C2HC: Associated 20.9 1.1E+02 0.0024 23.9 3.0 61 114-181 2-63 (68)
249 PTZ00191 60S ribosomal protein 20.6 2.7E+02 0.0058 25.4 5.7 59 593-654 81-141 (145)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1e-45 Score=417.52 Aligned_cols=333 Identities=23% Similarity=0.335 Sum_probs=270.0
Q ss_pred EEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 103 VSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 103 ~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
|||+++ +++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++| +..+++..|.|++|.|.|+.
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~A----l~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERA----LETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH----HHHhCCCEECCeeEEeeccc
Confidence 455555 5999999999999999999999999999999999999999999999999 88999999999999998875
Q ss_pred cc-------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe
Q psy15852 182 AK-------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK 253 (661)
Q Consensus 182 ~~-------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~ 253 (661)
.. ..+|||+|||.++++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.+ +..+.++
T Consensus 79 ~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 79 RDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred ccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 32 3579999999999999999999999999999999875 5889999999999999999999887 6789999
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCC
Q psy15852 254 EVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQA 333 (661)
Q Consensus 254 ~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (661)
.|.|.....+.++..
T Consensus 158 ~i~v~~~~~~~~~~~----------------------------------------------------------------- 172 (562)
T TIGR01628 158 EVYVGRFIKKHEREA----------------------------------------------------------------- 172 (562)
T ss_pred eEEEecccccccccc-----------------------------------------------------------------
Confidence 999977655432100
Q ss_pred CCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccC
Q psy15852 334 TPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKT 413 (661)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~ 413 (661)
.. .....++++.++.+++++++|+++|..|
T Consensus 173 -~~------------------------------------------------~~~~~~l~V~nl~~~~tee~L~~~F~~f- 202 (562)
T TIGR01628 173 -AP------------------------------------------------LKKFTNLYVKNLDPSVNEDKLRELFAKF- 202 (562)
T ss_pred -cc------------------------------------------------ccCCCeEEEeCCCCcCCHHHHHHHHHhc-
Confidence 00 0001234555555669999999999888
Q ss_pred cccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCC----CcE
Q psy15852 414 TTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKIN----DKE 488 (661)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~----g~~ 488 (661)
|+|.++.+..+. +++++|||||.|.+.++|.+|++ .++..+. |+.
T Consensus 203 -----------------------------G~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~ 252 (562)
T TIGR01628 203 -----------------------------GEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKK 252 (562)
T ss_pred -----------------------------CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccccccee
Confidence 789999998874 67889999999999999999994 5567777 888
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCc
Q psy15852 489 VDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLT 568 (661)
Q Consensus 489 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 568 (661)
|.|.++..+.++... .. ..
T Consensus 253 l~v~~a~~k~er~~~-------------------------------------------------------~~----~~-- 271 (562)
T TIGR01628 253 LYVGRAQKRAEREAE-------------------------------------------------------LR----RK-- 271 (562)
T ss_pred eEeecccChhhhHHH-------------------------------------------------------HH----hh--
Confidence 888777655332100 00 00
Q ss_pred ccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q psy15852 569 VSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648 (661)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A 648 (661)
. . ............++|||+|||+++|+++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|
T Consensus 272 --------~-~--~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 272 --------F-E--ELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred --------H-H--hhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHH
Confidence 0 0 00000000123568999999999999999999999999999999999 5699999999999999999
Q ss_pred HHHHHhCCcc
Q psy15852 649 EKASVEDVYF 658 (661)
Q Consensus 649 ~~A~~~~~~~ 658 (661)
.+|+.++|..
T Consensus 340 ~~A~~~~~g~ 349 (562)
T TIGR01628 340 NRAVTEMHGR 349 (562)
T ss_pred HHHHHHhcCC
Confidence 9999987754
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4e-39 Score=354.95 Aligned_cols=413 Identities=15% Similarity=0.134 Sum_probs=254.8
Q ss_pred cEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHH--hCCeeecceeehh
Q psy15852 101 KMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA--EGNHVINNKKIEA 177 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~--~~~~~i~g~~i~v 177 (661)
++|+|+|+| ++++++|+++|++||+|.+|+|+++ ||||||+|.+.++|++| +.. +++..|.|++|.|
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~A----i~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKAC----VNFATSVPIYIRGQPAFF 72 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHH----HHHhhcCCceEcCeEEEE
Confidence 455666655 9999999999999999999999863 57999999999999998 654 5789999999999
Q ss_pred hhhhccC-----------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHH
Q psy15852 178 KKAKAKS-----------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVI 240 (661)
Q Consensus 178 ~~~~~~~-----------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 240 (661)
.++..+. .+|||.||++.+++++|+++|++||.|.+|.++++.. +++|||+|.+.++|.
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~ 148 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQ 148 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHH
Confidence 8764211 2699999999999999999999999999999987542 478999999999999
Q ss_pred HHHHhC-CCccCC--eEEEEEeccCCCCCCC--CCCCCCCCC----------CCCCCCCCCCCCCC--CCCCCCCCCCCC
Q psy15852 241 DLLKNP-KQKIND--KEVDVKKATPKPEPFG--VRGGRGGRG----------GRGGRGGRMAGGYG--GYGGYGGGYGGI 303 (661)
Q Consensus 241 ~Al~~~-~~~~~g--~~i~V~~a~~k~~~~~--~~~~~~~~g----------~~~g~~~~~~~~~g--~~~g~~~~~~~~ 303 (661)
+|++.+ +..|.+ +.|+|.|++...-.-. ....+..-+ .............+ ...+...||+..
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 999987 566654 5899998876432100 000000000 00000000000000 000111111111
Q ss_pred --CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccc
Q psy15852 304 --LYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSY 381 (661)
Q Consensus 304 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (661)
.+.+ .+....++.... ...+..+.+.. .+.+. .+ . .+
T Consensus 229 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-----~~-------~-------------------------~~ 267 (481)
T TIGR01649 229 GGPLAP--LAGGDRMGPPHG-PPSRYRPAYEA-APLAP-----AI-------S-------------------------SY 267 (481)
T ss_pred CCCCCc--ccccccCCCccc-CCCCCcccccc-cccCc-----cc-------c-------------------------cc
Confidence 0000 000000000000 00000000000 00000 00 0 00
Q ss_pred ccc-ccccccccccCCCCC-cCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcc
Q psy15852 382 REW-GHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQR 459 (661)
Q Consensus 382 ~~~-g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~ 459 (661)
... ..-..++++.++.+. +++++|+++|..| |+|..|+++.+ .
T Consensus 268 ~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y------------------------------G~V~~vki~~~-----~ 312 (481)
T TIGR01649 268 GPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY------------------------------GNVERVKFMKN-----K 312 (481)
T ss_pred CCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc------------------------------CCeEEEEEEeC-----C
Confidence 000 011234555555553 9999999999998 78999999875 3
Q ss_pred cceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 460 KNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELD 538 (661)
Q Consensus 460 ~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~ 538 (661)
+|||||+|.+.++|+.|+. +++..|.|+.|.|..+..........+.. . .+..+ +
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~-~------------~~~~~-------~---- 368 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQL-D------------DGLTS-------Y---- 368 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcC-c------------CCCcc-------c----
Confidence 6999999999999999994 67788999999998876542211100000 0 00000 0
Q ss_pred CccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCC
Q psy15852 539 YLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYG 618 (661)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G 618 (661)
.+...+... ....|. ............+|||+|||+++||++|+++|+.||
T Consensus 369 -------~d~~~~~~~-------r~~~~~---------------~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G 419 (481)
T TIGR01649 369 -------KDYSSSRNH-------RFKKPG---------------SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENG 419 (481)
T ss_pred -------ccccCCccc-------cCCCcc---------------cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcC
Confidence 000000000 000000 000001123457899999999999999999999999
Q ss_pred C--eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 619 E--IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 619 ~--I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
. |.+|++..+.. + ++|+|||+|.+.++|.+|+..+|+.
T Consensus 420 ~~~i~~ik~~~~~~-~-~~~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 420 VHKVKKFKFFPKDN-E-RSKMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred CccceEEEEecCCC-C-cceeEEEEcCCHHHHHHHHHHhcCC
Confidence 8 88898876542 3 5899999999999999999987764
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.5e-39 Score=360.86 Aligned_cols=325 Identities=18% Similarity=0.268 Sum_probs=253.8
Q ss_pred eEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeecccc----------cccccccccceeee
Q psy15852 32 KLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHH----------YYLFDQILRTHFFY 94 (661)
Q Consensus 32 ~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~----------~~l~~~~~r~~~~~ 94 (661)
.|||||||+++|| ++|+++| ++| .|.+|.+++|..+.. |.|...+. ..+.++.++..|..
T Consensus 2 sl~VgnLp~~vte-~~L~~~F~~~G--~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTE-AKLYDLFKPFG--PVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCH-HHHHHHHHhcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 6999999999999 9999999 999 999999999987543 34333322 12333444555542
Q ss_pred eec----CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 95 IME----AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 95 ~~~----~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
... .....|+++|++ ++++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|++| +..+++..
T Consensus 79 ~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A----i~~lng~~ 153 (562)
T TIGR01628 79 RDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA----IQKVNGML 153 (562)
T ss_pred ccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH----HHHhcccE
Confidence 111 112345555555 99999999999999999999999986 589999999999999999999 89999999
Q ss_pred ecceeehhhhhhcc----------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHH
Q psy15852 170 INNKKIEAKKAKAK----------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239 (661)
Q Consensus 170 i~g~~i~v~~~~~~----------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 239 (661)
+.++.|.|.....+ .++|||+|||.++++++|+++|++||.|.++.++.+. +++++|||||+|.+.++|
T Consensus 154 ~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 154 LNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred ecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHH
Confidence 99999988654332 2569999999999999999999999999999999885 588999999999999999
Q ss_pred HHHHHhC-CCccC----CeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q psy15852 240 IDLLKNP-KQKIN----DKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELN 314 (661)
Q Consensus 240 ~~Al~~~-~~~~~----g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 314 (661)
.+|++.+ +..+. |+.|.|.++..+.++..
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~---------------------------------------------- 266 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREA---------------------------------------------- 266 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhhHH----------------------------------------------
Confidence 9999987 57788 99999988876543200
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccc-cccccccc
Q psy15852 315 ELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWG-HVADNLLL 393 (661)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 393 (661)
.++..+......... ....++++
T Consensus 267 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~V 290 (562)
T TIGR01628 267 --------------------------------------------------------ELRRKFEELQQERKMKAQGVNLYV 290 (562)
T ss_pred --------------------------------------------------------HHHhhHHhhhhhhhcccCCCEEEE
Confidence 000000000000000 01123555
Q ss_pred cCCCCCcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHH
Q psy15852 394 CDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVV 473 (661)
Q Consensus 394 ~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A 473 (661)
.++.+.+++++|+++|+.| |+|.+|++..| .+++++|||||+|.+.++|
T Consensus 291 ~nl~~~~~~~~L~~~F~~~------------------------------G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 291 KNLDDTVTDEKLRELFSEC------------------------------GEITSAKVMLD-EKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred eCCCCccCHHHHHHHHHhc------------------------------CCeEEEEEEEC-CCCCcCCeEEEEeCCHHHH
Confidence 5555569999999999988 78999999998 7789999999999999999
Q ss_pred HHHH-hCCCCcCCCcEEEEecCCCCC
Q psy15852 474 IDLL-KNPKQKINDKEVDVKKATPKP 498 (661)
Q Consensus 474 ~~Ai-~~~~~~l~g~~i~v~~a~~~~ 498 (661)
.+|+ ..++..++|+.|.|.+|..+.
T Consensus 340 ~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 340 NRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHhcCCeeCCceeEEEeccCcH
Confidence 9999 466688999999999998764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1e-37 Score=333.05 Aligned_cols=317 Identities=16% Similarity=0.175 Sum_probs=209.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
..+|||+|||..+++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.+ +..+.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 468999999999999999999999999999999999999999999999999999999999987 6789999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
+....
T Consensus 83 ~~~~~--------------------------------------------------------------------------- 87 (352)
T TIGR01661 83 SSDSI--------------------------------------------------------------------------- 87 (352)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 43210
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTE 422 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~ 422 (661)
....+++.++.+.+++++|+.+|..+
T Consensus 88 --------------------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~---------- 113 (352)
T TIGR01661 88 --------------------------------------------KGANLYVSGLPKTMTQHELESIFSPF---------- 113 (352)
T ss_pred --------------------------------------------ccceEEECCccccCCHHHHHHHHhcc----------
Confidence 01134555555568999999999888
Q ss_pred cchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCC--cEEEEecCCCCCC
Q psy15852 423 HMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKIND--KEVDVKKATPKPE 499 (661)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g--~~i~v~~a~~~~~ 499 (661)
|+|..+.++.+..++.++|||||+|.+.++|+.|+ .+++..+.| ..|.|.++.....
T Consensus 114 --------------------G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 114 --------------------GQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred --------------------CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCc
Confidence 78999999999989999999999999999999999 455566665 5688888765432
Q ss_pred CCCCCCC------CCCCCCCCCCCCC-CCCCCC----CCCCCCCCCCC-CCCccccccccccCCCccccccccccCCCCC
Q psy15852 500 PFGVRGG------RGGRGGRGGRGGR-MAGGYG----GYGGYGGGYGE-LDYLQLWQFFDWISSSFSENCLLEDSIGKPL 567 (661)
Q Consensus 500 ~~~~~~~------~~~~~~~~~~~~~-~~~g~g----g~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 567 (661)
....... ............. ...+.+ ....+....+. ..+..... ...... .........|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~ 247 (352)
T TIGR01661 174 SNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQ-QQHAVA-----QQHAAQRASPP 247 (352)
T ss_pred CCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhh-hhcccc-----cccccccCCCc
Confidence 2110000 0000000000000 000000 00000000000 00000000 000000 00000000000
Q ss_pred cccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q psy15852 568 TVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 647 (661)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~ 647 (661)
........ .. ...........+.+|||+|||+++++++|+++|++||.|++|+|++|+.||++||||||+|.+.++
T Consensus 248 ~~~~~~~~--~~--~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 248 ATDGQTAG--LA--AGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred cccccccc--cc--cCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 00000000 00 000000111234579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccc
Q psy15852 648 LEKASVEDVYFY 659 (661)
Q Consensus 648 A~~A~~~~~~~~ 659 (661)
|.+||+.++.+.
T Consensus 324 A~~Ai~~lnG~~ 335 (352)
T TIGR01661 324 AAMAILSLNGYT 335 (352)
T ss_pred HHHHHHHhCCCE
Confidence 999999988754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.5e-37 Score=328.84 Aligned_cols=335 Identities=18% Similarity=0.179 Sum_probs=221.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+|+|.+|+++++|++|+++|++||+|.+|+|++++.+|+++|||||+|.++++|++| +..+++..|.|+.|.|.+
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~A----i~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKA----VNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHH----HhhcccEEECCeeEEEEe
Confidence 4455555555999999999999999999999999999999999999999999999999 889999999999999988
Q ss_pred hhcc-----CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC-
Q psy15852 180 AKAK-----SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND- 252 (661)
Q Consensus 180 ~~~~-----~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g- 252 (661)
+.+. .++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.+ +..+.|
T Consensus 80 a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 7654 368999999999999999999999999999999998888899999999999999999999987 456655
Q ss_pred -eEEEEEeccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC--CCCCCCccccccccCCCCCCCCCCCCC
Q psy15852 253 -KEVDVKKATPKPEPFGVRGGRGGRGGRGGRG-GRMAGGYGGYGGYGGGYG--GILYKPLLFYELNELGISGRSLVCRTG 328 (661)
Q Consensus 253 -~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~-~~~~~~~g~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (661)
++|.|.++..+....... -........... ..........++..+... ...+.+..... +............
T Consensus 160 ~~~i~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 235 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKG-LLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDF---TAVLAHQQQQHAV 235 (352)
T ss_pred ceeEEEEECCCCCcCCchh-cCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchh---hhhhhhhhhhccc
Confidence 678999887654321100 000000000000 000000000000000000 00000000000 0000000000000
Q ss_pred CCCCCCCCCcccCCCc-cEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhh
Q psy15852 329 PMVQATPPLAEVDVTG-VIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPE 407 (661)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~ 407 (661)
+......+........ ......+.... ....-..+++|.++.+.+++++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~lfV~NL~~~~~e~~L~~ 288 (352)
T TIGR01661 236 AQQHAAQRASPPATDGQTAGLAAGAQIA---------------------------ASDGAGYCIFVYNLSPDTDETVLWQ 288 (352)
T ss_pred ccccccccCCCccccccccccccCCCCC---------------------------CCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 0000000000000000 00000000000 0000112466666666699999999
Q ss_pred hhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCC
Q psy15852 408 AFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKIND 486 (661)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g 486 (661)
+|++| |.|.+++++.|..+++++|||||+|.+.++|..||. +++..|+|
T Consensus 289 ~F~~f------------------------------G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 289 LFGPF------------------------------GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred HHHhC------------------------------CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 99998 779999999999999999999999999999999994 67789999
Q ss_pred cEEEEecCCCCCC
Q psy15852 487 KEVDVKKATPKPE 499 (661)
Q Consensus 487 ~~i~v~~a~~~~~ 499 (661)
+.|.|.+++.+..
T Consensus 339 r~i~V~~~~~~~~ 351 (352)
T TIGR01661 339 RVLQVSFKTNKAY 351 (352)
T ss_pred eEEEEEEccCCCC
Confidence 9999999988753
No 6
>KOG0145|consensus
Probab=100.00 E-value=3.3e-38 Score=295.55 Aligned_cols=163 Identities=26% Similarity=0.411 Sum_probs=149.6
Q ss_pred cCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 97 EAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 97 ~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
+..++.++++-+| .+|++||+.+|...|+|++|++++||.+|+|.||+||.|.+++||++| +..+||..+..+.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~A----intlNGLrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKA----INTLNGLRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHH----HhhhcceeeccceE
Confidence 4456777777777 999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhccC-----CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-Cc
Q psy15852 176 EAKKAKAKS-----GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QK 249 (661)
Q Consensus 176 ~v~~~~~~~-----~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~ 249 (661)
+|.+++|.+ .+|||++||..+|..+|+++|++||.|..-+|+.|..||.++|.+||.|+..++|+.||+.++ ++
T Consensus 114 KVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 114 KVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred EEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 999998764 789999999999999999999999999999999999999999999999999999999999974 44
Q ss_pred cCC--eEEEEEeccCC
Q psy15852 250 IND--KEVDVKKATPK 263 (661)
Q Consensus 250 ~~g--~~i~V~~a~~k 263 (661)
--| .+|.|+++...
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 433 68999998754
No 7
>KOG0123|consensus
Probab=100.00 E-value=3.6e-36 Score=314.81 Aligned_cols=329 Identities=22% Similarity=0.286 Sum_probs=262.6
Q ss_pred EEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 102 MVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 102 ~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
.+|++ |++||..|.++|+.+|+|.+|+|++|. | +-|||||.|.++++|++| +.++|...+.|++|++.|+.
T Consensus 3 sl~vg--~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A----~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 3 SLYVG--PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERA----LDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred ceecC--CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHH----HHHcCCcccCCcEEEeehhc
Confidence 46777 999999999999999999999999998 6 999999999999999999 99999999999999999999
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
.....|||+||+++++..+|.++|+.||+|.+|++..+.. | ++|| ||+|+++++|.+|+..+ +..+.+++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 9888899999999999999999999999999999999876 4 8999 99999999999999997 67899999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15852 261 TPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEV 340 (661)
Q Consensus 261 ~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (661)
..+.++..+- .+
T Consensus 151 ~~~~er~~~~-------------------------------------------------------------------~~- 162 (369)
T KOG0123|consen 151 ERKEEREAPL-------------------------------------------------------------------GE- 162 (369)
T ss_pred cchhhhcccc-------------------------------------------------------------------cc-
Confidence 8877642110 00
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCC
Q psy15852 341 DVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT 420 (661)
Q Consensus 341 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~ 420 (661)
. +..+ .+.++.+..-.+++++|..+|..+
T Consensus 163 ~-------------------------------~~~~------------t~v~vk~~~~~~~~~~l~~~f~~~-------- 191 (369)
T KOG0123|consen 163 Y-------------------------------KKRF------------TNVYVKNLEEDSTDEELKDLFSAY-------- 191 (369)
T ss_pred h-------------------------------hhhh------------hhhheeccccccchHHHHHhhccc--------
Confidence 0 0000 011112122236777777777776
Q ss_pred cccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCC-CcCCCcEEEEecCCCCCC
Q psy15852 421 TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499 (661)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~-~~l~g~~i~v~~a~~~~~ 499 (661)
|.|.++.++.+.... +++|+||.|.++++|..|+..+. ..+.+..+.|..+..+.+
T Consensus 192 ----------------------g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 192 ----------------------GSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred ----------------------CcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhccCCcCCccceeecccccchh
Confidence 779999998876654 89999999999999999995554 556678888876665322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCcccccc
Q psy15852 500 PFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFD 579 (661)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 579 (661)
... +........
T Consensus 249 ~~~--------------------------------------------------------------------~l~~~~~~~ 260 (369)
T KOG0123|consen 249 REA--------------------------------------------------------------------ELKRKFEQE 260 (369)
T ss_pred hHH--------------------------------------------------------------------HHhhhhHhh
Confidence 110 000000000
Q ss_pred CCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 580 QNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
. ...........|||.|+...++++.|+++|+.||+|.+++|+.++. |+++|||||+|.+.++|.+|+...+.
T Consensus 261 ~----~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~-g~skG~gfV~fs~~eeA~~A~~~~n~ 333 (369)
T KOG0123|consen 261 F----AKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN-GKSKGFGFVEFSSPEEAKKAMTEMNG 333 (369)
T ss_pred h----hhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC-CCccceEEEEcCCHHHHHHHHHhhCh
Confidence 0 0000012346799999999999999999999999999999999987 99999999999999999999886543
No 8
>KOG0127|consensus
Probab=100.00 E-value=3.6e-35 Score=301.10 Aligned_cols=160 Identities=22% Similarity=0.382 Sum_probs=147.8
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++|+.+++++++.++|.++|+.+|+|..|.++.++.++.+|||+||.|.-.||+++| +...++..+.|+.|.|..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA----~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRA----LAETEQSKFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHH----HHHhhcCcccceeccccc
Confidence 5788888888999999999999999999999999999899999999999999999999 888999999999999987
Q ss_pred hhccC-------------------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcE
Q psy15852 180 AKAKS-------------------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228 (661)
Q Consensus 180 ~~~~~-------------------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~ 228 (661)
+..+. .+|.|+|||+.+.+.+|+.+|++||.|..|.|++..+++.+ ||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GF 160 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GF 160 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ce
Confidence 75432 57999999999999999999999999999999988875554 99
Q ss_pred EEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 229 CFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 229 afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
|||+|....+|.+||+.+ ++.|+||+|-|.||.++.
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999997 589999999999999876
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.6e-34 Score=315.34 Aligned_cols=246 Identities=20% Similarity=0.288 Sum_probs=198.4
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeec-ceeeh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN-NKKIE 176 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~-g~~i~ 176 (661)
..+.|+|+|+| +++|++|+++|++||+|.+|+|++| .+|++||||||+|.+.++|++| +..+|+..|. ++.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~A----i~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEA----VKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHH----HHHcCCCeecCCcccc
Confidence 34556666666 9999999999999999999999999 6799999999999999999999 9999998885 77777
Q ss_pred hhhhhccCCeeEecCCCccCCHHHHHHHHhcCCC-eEEE-EeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC---CccC
Q psy15852 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGN-IIET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK---QKIN 251 (661)
Q Consensus 177 v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~---~~~~ 251 (661)
|..+. ..++|||+|||.++++++|.+.|++++. +.++ .+.....+++++|||||+|.++++|.+|++.+. ..+.
T Consensus 132 V~~S~-~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 132 VCISV-DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred ccccc-cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 77664 3679999999999999999999999863 4444 333444557889999999999999999998762 4689
Q ss_pred CeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC
Q psy15852 252 DKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMV 331 (661)
Q Consensus 252 g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (661)
|+.|.|.|+.++.....
T Consensus 211 Gr~I~VdwA~p~~~~d~--------------------------------------------------------------- 227 (578)
T TIGR01648 211 GHVIAVDWAEPEEEVDE--------------------------------------------------------------- 227 (578)
T ss_pred CceEEEEeecccccccc---------------------------------------------------------------
Confidence 99999999986542100
Q ss_pred CCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhc
Q psy15852 332 QATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLT 411 (661)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~ 411 (661)
... .-..+|+|.++...+++++|+++|+.
T Consensus 228 --------~~~-------------------------------------------~~~k~LfVgNL~~~~tee~L~~~F~~ 256 (578)
T TIGR01648 228 --------DVM-------------------------------------------AKVKILYVRNLMTTTTEEIIEKSFSE 256 (578)
T ss_pred --------ccc-------------------------------------------ccccEEEEeCCCCCCCHHHHHHHHHh
Confidence 000 00123555555556999999999988
Q ss_pred cCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEE
Q psy15852 412 KTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVD 490 (661)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~ 490 (661)
|.+ |+|+.|.++. +||||+|.+.++|++|++ +++..|.|+.|.
T Consensus 257 f~~----------------------------G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 257 FKP----------------------------GKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cCC----------------------------CceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 854 7799987653 799999999999999995 667899999999
Q ss_pred EecCCCCCCC
Q psy15852 491 VKKATPKPEP 500 (661)
Q Consensus 491 v~~a~~~~~~ 500 (661)
|.++.+....
T Consensus 301 V~~Akp~~~~ 310 (578)
T TIGR01648 301 VTLAKPVDKK 310 (578)
T ss_pred EEEccCCCcc
Confidence 9999886543
No 10
>KOG0148|consensus
Probab=100.00 E-value=5.4e-34 Score=269.48 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=184.0
Q ss_pred CCCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCceeeecccccccccccccceeeeeecCCCcEEEEc
Q psy15852 28 DDDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHP 106 (661)
Q Consensus 28 ~~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~~ 106 (661)
++.|+||||||+.++|| +-|..+| +.| .+..|++|.|... +..++..... ....++.| .-+|+..
T Consensus 4 ~~prtlyvgnld~~vte-~~i~~lf~qig--~v~~~k~i~~e~~--v~wa~~p~nQ-sk~t~~~h--------fhvfvgd 69 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTE-DFIATLFNQIG--SVTKTKVIFDELK--VNWATAPGNQ-SKPTSNQH--------FHVFVGD 69 (321)
T ss_pred CCCceEEeeccChhhHH-HHHHHHHHhcc--ccccceeehhhhc--cccccCcccC-CCCccccc--------eeEEehh
Confidence 47899999999999999 9999999 999 9999999998322 2211111100 01111222 3467777
Q ss_pred CCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccC--
Q psy15852 107 GIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKS-- 184 (661)
Q Consensus 107 ~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~-- 184 (661)
+.+.++-++|++.|.+||+|.+++|++|.+|++||||+||.|...++|++| |..+||+-|.+|.|+..|+..+.
T Consensus 70 ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA----I~~MnGqWlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 70 LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA----IQQMNGQWLGRRTIRTNWATRKPSE 145 (321)
T ss_pred cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHH----HHHhCCeeeccceeeccccccCccc
Confidence 888999999999999999999999999999999999999999999999999 99999999999999999986543
Q ss_pred -------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 185 -------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 185 -------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
++|||+||+.-++|++|++.|++||.|.+|++.++ +|||||+|.+.|+|.+||..
T Consensus 146 ~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 146 MNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred cCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHH
Confidence 89999999999999999999999999999999876 89999999999999999999
Q ss_pred C-CCccCCeEEEEEeccCCCC
Q psy15852 246 P-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 246 ~-~~~~~g~~i~V~~a~~k~~ 265 (661)
+ +.++.|+.+++.|-+....
T Consensus 220 mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hcCceeCceEEEEeccccCCC
Confidence 7 6899999999999876543
No 11
>KOG0117|consensus
Probab=100.00 E-value=4.4e-33 Score=280.16 Aligned_cols=247 Identities=20% Similarity=0.316 Sum_probs=204.1
Q ss_pred CCCcEEEEc-CCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee-cceee
Q psy15852 98 AKNKMVSHP-GIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI-NNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~-~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i-~g~~i 175 (661)
...+-|+++ +|.++.|++|..+|++.|+|.+++|++|+.+|.+||||||.|.+.++|++| |..+|+++| .|+.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~A----ik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEA----IKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHH----HHHhhCccccCCCEe
Confidence 344444444 555999999999999999999999999999999999999999999999999 999999988 57888
Q ss_pred hhhhhhccCCeeEecCCCccCCHHHHHHHHhcCC-CeEEEEeccCC-CCCCcCcEEEEEeCCHHHHHHHHHhC---CCcc
Q psy15852 176 EAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDK-SKSQRKNFCFITFEHESVVIDLLKNP---KQKI 250 (661)
Q Consensus 176 ~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~ 250 (661)
.|..+. ..++|||+|||.+.++++|.+.|++.+ -|.+|.+...+ +..++||||||+|.++..|..|-.++ ..++
T Consensus 157 gvc~Sv-an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl 235 (506)
T KOG0117|consen 157 GVCVSV-ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL 235 (506)
T ss_pred EEEEee-ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee
Confidence 776554 468999999999999999999999987 46677666544 34789999999999999999998886 4689
Q ss_pred CCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCC
Q psy15852 251 NDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPM 330 (661)
Q Consensus 251 ~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (661)
+|..+.|.||.++.+..
T Consensus 236 wgn~~tVdWAep~~e~d--------------------------------------------------------------- 252 (506)
T KOG0117|consen 236 WGNAITVDWAEPEEEPD--------------------------------------------------------------- 252 (506)
T ss_pred cCCcceeeccCcccCCC---------------------------------------------------------------
Confidence 99999999999876531
Q ss_pred CCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhh
Q psy15852 331 VQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFL 410 (661)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~ 410 (661)
+.....| .+++|.|+.-++|+|.|++.|.
T Consensus 253 --------ed~ms~V-------------------------------------------KvLYVRNL~~~tTeE~lk~~F~ 281 (506)
T KOG0117|consen 253 --------EDTMSKV-------------------------------------------KVLYVRNLMESTTEETLKKLFN 281 (506)
T ss_pred --------hhhhhhe-------------------------------------------eeeeeeccchhhhHHHHHHHHH
Confidence 0011111 2344555555699999999998
Q ss_pred ccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEE
Q psy15852 411 TKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEV 489 (661)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i 489 (661)
.| |+|+.|+.++ .||||+|.+.++|.+|| ..+...|+|..|
T Consensus 282 ~~------------------------------G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 282 EF------------------------------GKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred hc------------------------------cceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceE
Confidence 88 7899999775 59999999999999999 556689999999
Q ss_pred EEecCCCCCCCC
Q psy15852 490 DVKKATPKPEPF 501 (661)
Q Consensus 490 ~v~~a~~~~~~~ 501 (661)
+|..|+|.....
T Consensus 324 EvtLAKP~~k~k 335 (506)
T KOG0117|consen 324 EVTLAKPVDKKK 335 (506)
T ss_pred EEEecCChhhhc
Confidence 999999886543
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.5e-32 Score=299.84 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=167.8
Q ss_pred CceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCceeeecccc------------cccccccccceeeeee
Q psy15852 30 DRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKPLTVSCSHH------------YYLFDQILRTHFFYIM 96 (661)
Q Consensus 30 ~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~~~~~~~~~------------~~l~~~~~r~~~~~~~ 96 (661)
-|.|||+|||+++|| ++|+++| .|| .|.+|.++++..-.-|.+...+. ..+.++..+..+....
T Consensus 2 s~vv~V~nLp~~~te-~~L~~~f~~fG--~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE-ADLVEALIPFG--PVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCCCCCCCH-HHHHHHHHhcC--CeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 478999999999999 9999999 999 99999998764222244433322 1112233333332100
Q ss_pred --------------cCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHH
Q psy15852 97 --------------EAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 161 (661)
Q Consensus 97 --------------~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~ 161 (661)
.....+|++.|++ .+++++|+++|+.||+|.+|.|+++.. +|+|||+|.+.++|.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A---- 150 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA---- 150 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH----
Confidence 0111256677765 999999999999999999999987542 47999999999999999
Q ss_pred HHHhCCeeecce--eehhhhhh----------------------------------------------------------
Q psy15852 162 VIAEGNHVINNK--KIEAKKAK---------------------------------------------------------- 181 (661)
Q Consensus 162 ~~~~~~~~i~g~--~i~v~~~~---------------------------------------------------------- 181 (661)
+..||+..|.+. .|.|.+++
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 230 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGG 230 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCC
Confidence 899999988542 23222211
Q ss_pred ------------------------------------------ccCCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEecc
Q psy15852 182 ------------------------------------------AKSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 182 ------------------------------------------~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
+..++|||+|||+ .+++++|+++|++||.|..|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~ 310 (481)
T TIGR01649 231 PLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK 310 (481)
T ss_pred CCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 1235899999998 699999999999999999999987
Q ss_pred CCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 219 DKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
++ +|||||+|.+.++|.+|+..+ +..|.|++|.|.++..+.
T Consensus 311 ~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 311 NK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 63 799999999999999999987 688999999999986543
No 13
>KOG0144|consensus
Probab=100.00 E-value=6.6e-33 Score=277.48 Aligned_cols=165 Identities=24% Similarity=0.410 Sum_probs=144.3
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe-eecc--eeeh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH-VINN--KKIE 176 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~-~i~g--~~i~ 176 (661)
-++||...+..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+| +..+++. +|.| .+|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a----~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEA----INALHNQKTLPGMHHPVQ 110 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHH----HHHhhcccccCCCCccee
Confidence 4566666666999999999999999999999999999999999999999999999999 7776554 4544 6777
Q ss_pred hhhhhcc------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC--C
Q psy15852 177 AKKAKAK------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK--Q 248 (661)
Q Consensus 177 v~~~~~~------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~--~ 248 (661)
|++++.+ +++|||+-|++.++|.+++++|++||.|++|.|++|.. +.+||||||+|.+.+-|..||+.++ +
T Consensus 111 vk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccce
Confidence 7777543 46789999999999999999999999999999999987 8999999999999999999999985 4
Q ss_pred ccCC--eEEEEEeccCCCCCCCC
Q psy15852 249 KIND--KEVDVKKATPKPEPFGV 269 (661)
Q Consensus 249 ~~~g--~~i~V~~a~~k~~~~~~ 269 (661)
++.| .+|.|+||.++.++...
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred eeccCCCceEEEecccCCCchHH
Confidence 5665 78999999998876443
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.2e-32 Score=294.08 Aligned_cols=256 Identities=19% Similarity=0.239 Sum_probs=194.9
Q ss_pred hhhHHHhhHHHHHHhCCeeecceeehhhhhh----------ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCC
Q psy15852 151 TESLEKASVEDVIAEGNHVINNKKIEAKKAK----------AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK 220 (661)
Q Consensus 151 ~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~----------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 220 (661)
.++|.+| ++++++..+........... ...++|||+|||++++|++|+++|++||.|.+|+|++|
T Consensus 19 ~~~a~~a----~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D- 93 (578)
T TIGR01648 19 DEAALKA----LLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD- 93 (578)
T ss_pred cHHHHHH----HHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-
Confidence 5777788 77777766654433333321 12389999999999999999999999999999999999
Q ss_pred CCCCcCcEEEEEeCCHHHHHHHHHhCC-Ccc-CCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 221 SKSQRKNFCFITFEHESVVIDLLKNPK-QKI-NDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGG 298 (661)
Q Consensus 221 ~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~-~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~ 298 (661)
.+++++|||||+|.+.++|++||+.++ ..+ .|+.|.|.++...
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~----------------------------------- 138 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDN----------------------------------- 138 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccC-----------------------------------
Confidence 779999999999999999999999974 455 3566555433210
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhcc
Q psy15852 299 GYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTR 378 (661)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (661)
T Consensus 139 -------------------------------------------------------------------------------- 138 (578)
T TIGR01648 139 -------------------------------------------------------------------------------- 138 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCc
Q psy15852 379 SSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQ 458 (661)
Q Consensus 379 ~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~ 458 (661)
..++|.++.+.+++++|.+.|..++. +.+..+.++.+..+++
T Consensus 139 ----------~rLFVgNLP~~~TeeeL~eeFskv~e----------------------------gvv~vIv~~~~~~kgK 180 (578)
T TIGR01648 139 ----------CRLFVGGIPKNKKREEILEEFSKVTE----------------------------GVVDVIVYHSAADKKK 180 (578)
T ss_pred ----------ceeEeecCCcchhhHHHHHHhhcccC----------------------------CceEEEEeccccccCc
Confidence 12344444445899999999988742 3333344445556678
Q ss_pred ccceEEEEeCChHHHHHHHhCCC---CcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 459 RKNFCFITFEHESVVIDLLKNPK---QKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYG 535 (661)
Q Consensus 459 ~~g~aFV~F~~~e~A~~Ai~~~~---~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~ 535 (661)
++|||||+|.++++|+.|++... ..+.|+.|.|.++.+......
T Consensus 181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~--------------------------------- 227 (578)
T TIGR01648 181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE--------------------------------- 227 (578)
T ss_pred cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc---------------------------------
Confidence 89999999999999999995332 457899999998876522100
Q ss_pred CCCCccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhh
Q psy15852 536 ELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFS 615 (661)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~ 615 (661)
......++|||+|||+++||++|+++|+
T Consensus 228 ----------------------------------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 228 ----------------------------------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred ----------------------------------------------------cccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 0011236899999999999999999999
Q ss_pred cC--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 616 KY--GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 616 ~~--G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
+| |.|++|++++ |||||+|.+.++|.+|+++++.
T Consensus 256 ~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG 291 (578)
T TIGR01648 256 EFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNG 291 (578)
T ss_pred hcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCC
Confidence 99 9999998874 5999999999999999997664
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=2.2e-30 Score=286.10 Aligned_cols=159 Identities=25% Similarity=0.404 Sum_probs=143.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
++|++.++++.+++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|.+| +.+++..+.|++|.|..
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~A-----l~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKA-----LALTGQMLLGRPIIVQS 164 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHH-----HHhCCCEECCeeeEEee
Confidence 3455555555999999999999999999999999999999999999999999999996 46999999999998866
Q ss_pred hhc-----------------cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q psy15852 180 AKA-----------------KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242 (661)
Q Consensus 180 ~~~-----------------~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 242 (661)
+.. ..++|||+|||..+++++|+++|++||.|..|.++.+..+|+++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 421 137899999999999999999999999999999999999899999999999999999999
Q ss_pred HHhC-CCccCCeEEEEEeccCC
Q psy15852 243 LKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 243 l~~~-~~~~~g~~i~V~~a~~k 263 (661)
++.+ +..|.|+.|.|.++...
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCC
Confidence 9987 68999999999998843
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.3e-30 Score=269.98 Aligned_cols=163 Identities=18% Similarity=0.335 Sum_probs=147.4
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..+.|||+++| ++|+++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++| +..+++..+.+++|.|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~A----i~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRA----IKNLNGITVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHH----HHHcCCCccCCceeee
Confidence 44555555555 999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred hhhhc-----cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC
Q psy15852 178 KKAKA-----KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN 251 (661)
Q Consensus 178 ~~~~~-----~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~ 251 (661)
.++.+ ...+|||+|||+.+++++|+++|++||+|+.|.|++++.+++++|||||+|.+.++|++||+.+ +..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 98764 3478999999999999999999999999999999999999999999999999999999999998 45565
Q ss_pred C--eEEEEEeccCCCC
Q psy15852 252 D--KEVDVKKATPKPE 265 (661)
Q Consensus 252 g--~~i~V~~a~~k~~ 265 (661)
+ ++|.|+++..+..
T Consensus 262 g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCceeEEEEECCcccc
Confidence 5 7999999987544
No 17
>KOG0127|consensus
Probab=99.97 E-value=1.8e-31 Score=273.88 Aligned_cols=227 Identities=20% Similarity=0.312 Sum_probs=191.1
Q ss_pred ceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeecccc----------cccccccccceee
Q psy15852 31 RKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHH----------YYLFDQILRTHFF 93 (661)
Q Consensus 31 r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~----------~~l~~~~~r~~~~ 93 (661)
.+|||++||++++. ++|.++| +.| +|..|+++.+..+.. |+|+..+. +.+..+.++...+
T Consensus 6 ~TlfV~~lp~~~~~-~qL~e~FS~vG--Pik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTG-EQLEEFFSYVG--PIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccch-hHHHHhhhccc--CcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 78999999999999 9999999 999 999999999977744 66665543 1111111111111
Q ss_pred e-------------------e----------ecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEE
Q psy15852 94 Y-------------------I----------MEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFA 144 (661)
Q Consensus 94 ~-------------------~----------~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~a 144 (661)
. . ..++-++||.+||+.+.+.+|+.+|+.||.|.+|.|++.+. |+-+|||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFa 161 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFA 161 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceE
Confidence 0 0 01134678888888999999999999999999999998766 6666999
Q ss_pred EEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccC----------------------------------------
Q psy15852 145 FIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKS---------------------------------------- 184 (661)
Q Consensus 145 fV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~---------------------------------------- 184 (661)
||+|....+|..| +..+|++.|.||+|.|.|+.++.
T Consensus 162 FV~fk~~~dA~~A----l~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~ 237 (678)
T KOG0127|consen 162 FVQFKEKKDAEKA----LEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEE 237 (678)
T ss_pred EEEEeeHHHHHHH----HHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccc
Confidence 9999999999999 99999999999999999985432
Q ss_pred -------------------------------------------------------CeeEecCCCccCCHHHHHHHHhcCC
Q psy15852 185 -------------------------------------------------------GKIFVGGLSPEMKDEEIKAHFAQFG 209 (661)
Q Consensus 185 -------------------------------------------------------~~lfV~nLp~~~te~~L~~~F~~~G 209 (661)
.+|||+|||+++|+++|.+.|++||
T Consensus 238 d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG 317 (678)
T KOG0127|consen 238 DSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG 317 (678)
T ss_pred cccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc
Confidence 5799999999999999999999999
Q ss_pred CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC------C-CccCCeEEEEEeccCCCC
Q psy15852 210 NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP------K-QKINDKEVDVKKATPKPE 265 (661)
Q Consensus 210 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~------~-~~~~g~~i~V~~a~~k~~ 265 (661)
+|..+.|+.++.|++++|.|||.|.+..+|++||..- + ..++||.|.|..+..+.+
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 9999999999999999999999999999999999874 3 578999999999988765
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.2e-28 Score=269.32 Aligned_cols=162 Identities=20% Similarity=0.439 Sum_probs=147.1
Q ss_pred cEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 101 KMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 101 ~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
+.||++++ +++++++|+++|++||+|.+|+|++|+.||++||||||+|.++++|++| +..+|+..|.|+.|.|.+
T Consensus 108 ~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~A----i~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 108 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLA----LEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHH----HHhcCCeEEecceeeecc
Confidence 34555555 4999999999999999999999999999999999999999999999999 889999999999999976
Q ss_pred hhc----------------cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q psy15852 180 AKA----------------KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243 (661)
Q Consensus 180 ~~~----------------~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al 243 (661)
... ..++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 432 1268999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC-CCccCCeEEEEEeccCCCCC
Q psy15852 244 KNP-KQKINDKEVDVKKATPKPEP 266 (661)
Q Consensus 244 ~~~-~~~~~g~~i~V~~a~~k~~~ 266 (661)
+.+ +..++|+.|+|.++..++..
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCccc
Confidence 998 57899999999999876543
No 19
>KOG0117|consensus
Probab=99.96 E-value=2.2e-28 Score=246.42 Aligned_cols=241 Identities=19% Similarity=0.282 Sum_probs=193.0
Q ss_pred CCCCCCCCCCCCC-----CCCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeeccccc-
Q psy15852 15 NGQENGGAPVSVK-----DDDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHHY- 81 (661)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~~- 81 (661)
+++++=+.|++-- .+--.||||.||.++.| ++|..+| +.| +|.++.++.|+.+.. |+|...+..
T Consensus 63 ~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~E-deLvplfEkiG--~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq 139 (506)
T KOG0117|consen 63 NGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFE-DELVPLFEKIG--KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQ 139 (506)
T ss_pred ccccccCCCCCcccCCCCCCCceEEecCCCccccc-hhhHHHHHhcc--ceeeEEEeecccCCCCcceEEEEeecHHHHH
Confidence 4555555554432 24467999999999999 9999999 999 999999999965554 776665541
Q ss_pred ----cccccccc---ceeeeeecCCCcEEEEcCCCcCCHHHHHHHhhcCCC-eeEEEEeeCCC-CCCcccEEEEEEeehh
Q psy15852 82 ----YLFDQILR---THFFYIMEAKNKMVSHPGIVHKITEELKEHFSKYGE-IENVTLKSDPN-TGRSRGFAFIVFKDTE 152 (661)
Q Consensus 82 ----~l~~~~~r---~~~~~~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~-I~~v~l~~~~~-tg~srG~afV~F~~~e 152 (661)
.|.+..+| ...+-....+.+||+.+.|.++++++|.+.|++.++ |++|.|..++. ..++||||||+|.++.
T Consensus 140 ~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~ 219 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHR 219 (506)
T ss_pred HHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecch
Confidence 22222222 223334556667777666669999999999999999 99999988765 3579999999999999
Q ss_pred hHHHhhHHHHHHhCCeeecceeehhhhhhccC----------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC
Q psy15852 153 SLEKASVEDVIAEGNHVINNKKIEAKKAKAKS----------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222 (661)
Q Consensus 153 ~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~----------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 222 (661)
.|..| ++.+.-....++|..+.|.|+.+.. +-|||+||+.++|++.|+++|++||.|+.|+.+
T Consensus 220 ~Aa~a--RrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----- 292 (506)
T KOG0117|consen 220 AAAMA--RRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----- 292 (506)
T ss_pred hHHHH--HhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----
Confidence 99887 2223335567899999999998765 789999999999999999999999999999876
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCCCCC
Q psy15852 223 SQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEPFG 268 (661)
Q Consensus 223 g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~~~~ 268 (661)
+.||||+|.+.++|.+||+.+ +..|+|..|.|.+|+|..+..-
T Consensus 293 ---rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 293 ---RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ---cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 449999999999999999998 5899999999999999776543
No 20
>KOG0123|consensus
Probab=99.96 E-value=7.8e-29 Score=259.60 Aligned_cols=317 Identities=21% Similarity=0.276 Sum_probs=243.5
Q ss_pred eEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCceeeecccc---------------cccccccccceeeee
Q psy15852 32 KLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKPLTVSCSHH---------------YYLFDQILRTHFFYI 95 (661)
Q Consensus 32 ~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~~~~~~~~~---------------~~l~~~~~r~~~~~~ 95 (661)
.|||| +++|| .+|.++| .+| ++.++.+++|. + .+.++-... ..+.++..|+.|...
T Consensus 3 sl~vg---~~v~e-~~l~~~f~~~~--~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 3 SLYVG---PDVTE-AMLFDKFSPAG--PVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred ceecC---CcCCh-HHHHHHhcccC--CceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 58999 99999 9999999 999 99999999998 7 754444333 223345566666533
Q ss_pred ecCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee
Q psy15852 96 MEAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174 (661)
Q Consensus 96 ~~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~ 174 (661)
.+ .++++.|++ +++..+|.++|+.||+|++|+|..+.+ | ++|| ||+|+++++|.+| +..+|+..+.+++
T Consensus 75 d~---~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~a----i~~~ng~ll~~kk 144 (369)
T KOG0123|consen 75 DP---SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKA----IEKLNGMLLNGKK 144 (369)
T ss_pred CC---ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHH----HHHhcCcccCCCe
Confidence 32 236666665 999999999999999999999999876 5 9999 9999999999999 9999999999999
Q ss_pred ehhhhhhccC-------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHH
Q psy15852 175 IEAKKAKAKS-------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241 (661)
Q Consensus 175 i~v~~~~~~~-------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 241 (661)
|.|.....+. ..++|.|++.+++++.|.++|+.+|.|.++.++.+.. +++++|+||.|.++++|.+
T Consensus 145 i~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~ 223 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKK 223 (369)
T ss_pred eEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHH
Confidence 9986654322 5789999999999999999999999999999999875 6699999999999999999
Q ss_pred HHHhCC-CccCCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q psy15852 242 LLKNPK-QKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISG 320 (661)
Q Consensus 242 Al~~~~-~~~~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (661)
|++.++ ..+.+..+.|..+..+.+...
T Consensus 224 av~~l~~~~~~~~~~~V~~aqkk~e~~~---------------------------------------------------- 251 (369)
T KOG0123|consen 224 AVETLNGKIFGDKELYVGRAQKKSEREA---------------------------------------------------- 251 (369)
T ss_pred HHHhccCCcCCccceeecccccchhhHH----------------------------------------------------
Confidence 999984 567788888888776433200
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccc-cccccccCCCCC
Q psy15852 321 RSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHV-ADNLLLCDNFPS 399 (661)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~p~ 399 (661)
.++.-|....-...-.+ .-++++.+....
T Consensus 252 --------------------------------------------------~l~~~~~~~~~~~~~~~~~~nl~vknld~~ 281 (369)
T KOG0123|consen 252 --------------------------------------------------ELKRKFEQEFAKRSVSLQGANLYVKNLDET 281 (369)
T ss_pred --------------------------------------------------HHhhhhHhhhhhccccccccccccccCccc
Confidence 00000000000000000 112333334445
Q ss_pred cCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-h
Q psy15852 400 IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-K 478 (661)
Q Consensus 400 ~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~ 478 (661)
++.+.++..|..+ |+|.++++..+ ..++++||+||.|.++++|.+|+ .
T Consensus 282 ~~~e~L~~~f~~~------------------------------GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~~~ 330 (369)
T KOG0123|consen 282 LSDEKLRKIFSSF------------------------------GEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAMTE 330 (369)
T ss_pred cchhHHHHHHhcc------------------------------cceeeEEEEec-cCCCccceEEEEcCCHHHHHHHHHh
Confidence 8888888888887 78999888775 45788999999999999999999 4
Q ss_pred CCCCcCCCcEEEEecCCCCCCC
Q psy15852 479 NPKQKINDKEVDVKKATPKPEP 500 (661)
Q Consensus 479 ~~~~~l~g~~i~v~~a~~~~~~ 500 (661)
.++..+.++.|.|.++..+..+
T Consensus 331 ~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 331 MNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred hChhhhcCCchhhhHHhhhccc
Confidence 5557788899988887755443
No 21
>KOG0148|consensus
Probab=99.96 E-value=3.6e-28 Score=230.14 Aligned_cols=233 Identities=16% Similarity=0.276 Sum_probs=177.8
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
-+++||+|+. ++||+-|..||++.|+|+.++|+.+.- ....| ..--+...
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------~v~wa----~~p~nQsk--------- 56 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------KVNWA----TAPGNQSK--------- 56 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------ccccc----cCcccCCC---------
Confidence 3455666655 999999999999999999999998721 11111 00000000
Q ss_pred hhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 179 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
......-.+||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|-+.++|+.||..| ++.|.+|.|+-
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 00111236999999999999999999999999999999999999999999999999999999999998 58899999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 258 KKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPL 337 (661)
Q Consensus 258 ~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (661)
.||..|+...... .
T Consensus 137 NWATRKp~e~n~~---------------------------------------------------------------~--- 150 (321)
T KOG0148|consen 137 NWATRKPSEMNGK---------------------------------------------------------------P--- 150 (321)
T ss_pred cccccCccccCCC---------------------------------------------------------------C---
Confidence 9999887321000 0
Q ss_pred cccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCccc
Q psy15852 338 AEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTV 416 (661)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~ 416 (661)
.+-+++ |.+ ..-.++-++|.+.+. +++++++..|++|
T Consensus 151 -----------------------------ltfdeV---~NQ------ssp~NtsVY~G~I~~~lte~~mr~~Fs~f---- 188 (321)
T KOG0148|consen 151 -----------------------------LTFDEV---YNQ------SSPDNTSVYVGNIASGLTEDLMRQTFSPF---- 188 (321)
T ss_pred -----------------------------ccHHHH---hcc------CCCCCceEEeCCcCccccHHHHHHhcccC----
Confidence 000111 100 012456678888888 9999999999998
Q ss_pred ccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCC
Q psy15852 417 PMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKAT 495 (661)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~ 495 (661)
|.|.+|++..+ +||+||.|++.|+|.+|| ..++.+++|..+++.|.+
T Consensus 189 --------------------------G~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 189 --------------------------GPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred --------------------------CcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 66999998764 699999999999999999 566689999999999988
Q ss_pred CCCCCC
Q psy15852 496 PKPEPF 501 (661)
Q Consensus 496 ~~~~~~ 501 (661)
......
T Consensus 237 e~~~~~ 242 (321)
T KOG0148|consen 237 EGDDGI 242 (321)
T ss_pred cCCCCC
Confidence 765443
No 22
>KOG0110|consensus
Probab=99.96 E-value=3.4e-28 Score=258.37 Aligned_cols=349 Identities=16% Similarity=0.205 Sum_probs=235.9
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++|+.+|++.++++||+.+| +||.|..++.|.+| -..++++.+.|+-+.|
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka----~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKA----YSELDGKVFQGRMLHV 278 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhh----hhhccccccccceeee
Confidence 45678888888899999999999 88889999999998 8888899888888876
Q ss_pred hhhhccC-------------------------------------------------------------------------
Q psy15852 178 KKAKAKS------------------------------------------------------------------------- 184 (661)
Q Consensus 178 ~~~~~~~------------------------------------------------------------------------- 184 (661)
.+..++.
T Consensus 279 lp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~et 358 (725)
T KOG0110|consen 279 LPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGET 358 (725)
T ss_pred cCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHh
Confidence 5433211
Q ss_pred ---------------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHH
Q psy15852 185 ---------------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237 (661)
Q Consensus 185 ---------------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 237 (661)
+.|+|+|||..+..++|...|..||+|..+.++.. --.|+|+|.++.
T Consensus 359 r~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~ 432 (725)
T KOG0110|consen 359 RVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPL 432 (725)
T ss_pred hhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCcc
Confidence 45999999999999999999999999999966521 223999999999
Q ss_pred HHHHHHHhCC-CccCCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccC
Q psy15852 238 VVIDLLKNPK-QKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNEL 316 (661)
Q Consensus 238 ~A~~Al~~~~-~~~~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (661)
+|.+|++.+. ..+...++.+.|+...-..- .|...
T Consensus 433 eAr~Afrklaysr~k~~plyle~aP~dvf~~--------------------------------------~pka~------ 468 (725)
T KOG0110|consen 433 EARKAFRKLAYSRFKSAPLYLEWAPEDVFTE--------------------------------------DPKAD------ 468 (725)
T ss_pred chHHHHHHhchhhhccCccccccChhhhccC--------------------------------------Ccccc------
Confidence 9999999984 56777777777765422110 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCC
Q psy15852 317 GISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDN 396 (661)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 396 (661)
...+.+. .++.+.. .-.+........+..++.+..+...+-.-. ...+.|+..|
T Consensus 469 -------~~~~e~~----~~~ee~~-----~Er~s~~d~~v~eD~d~te~ss~a~~a~~~----------~~~t~lfvkN 522 (725)
T KOG0110|consen 469 -------DLSAESR----SKMEENP-----SERVSAEDGQVEEDKDPTEESSLARVAEDE----------ETETKLFVKN 522 (725)
T ss_pred -------ccccccc----cccccCc-----ceecccccccccccCCccccccchhhhhcc----------ccchhhhhhc
Confidence 0000000 0000000 000000000000000000011101010000 0111133334
Q ss_pred CCC-cCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccC---CcccceEEEEeCChHH
Q psy15852 397 FPS-IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSK---SQRKNFCFITFEHESV 472 (661)
Q Consensus 397 ~p~-~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~---~~~~g~aFV~F~~~e~ 472 (661)
++. ++.+++..+|... |.|.++.|...+.. -.++|||||+|.++++
T Consensus 523 lnf~Tt~e~l~~~F~k~------------------------------G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~ 572 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQ------------------------------GTVLSIEISKKKDPANKYLSMGFGFVEFAKPES 572 (725)
T ss_pred CCcccchhHHHHHHHhc------------------------------CeEEEEEEeccccccccccccceeEEEecCHHH
Confidence 443 7777777777665 78999987654432 3467999999999999
Q ss_pred HHHHHhCCC-CcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC
Q psy15852 473 VIDLLKNPK-QKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISS 551 (661)
Q Consensus 473 A~~Ai~~~~-~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~ 551 (661)
|+.|+..++ ..|+|+.|.|+.+..++....+
T Consensus 573 A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g------------------------------------------------ 604 (725)
T KOG0110|consen 573 AQAALKALQGTVLDGHKLELKISENKPASTVG------------------------------------------------ 604 (725)
T ss_pred HHHHHHHhcCceecCceEEEEeccCccccccc------------------------------------------------
Confidence 999998766 8899999999888733221100
Q ss_pred CccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC
Q psy15852 552 SFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNT 631 (661)
Q Consensus 552 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~t 631 (661)
+ ..+.....++|+|+||||+++..+|+++|++||+|.+|+||.....
T Consensus 605 --------------K-------------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k 651 (725)
T KOG0110|consen 605 --------------K-------------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK 651 (725)
T ss_pred --------------c-------------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc
Confidence 0 0001112579999999999999999999999999999999998667
Q ss_pred CCcccEEEEEEcCHHHHHHHHHh--CCcccC
Q psy15852 632 GRSRGFAFIVFKDTESLEKASVE--DVYFYS 660 (661)
Q Consensus 632 g~s~G~aFV~F~~~e~A~~A~~~--~~~~~~ 660 (661)
+.++|||||+|.++.+|.+|++. .+|||-
T Consensus 652 ~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 652 GAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred hhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 88899999999999999999986 678873
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.2e-26 Score=260.10 Aligned_cols=153 Identities=18% Similarity=0.362 Sum_probs=129.5
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcC------------CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhC
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKY------------GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~------------G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~ 166 (661)
.+.|||+|+| ++|+++|+++|.+| +.|..+.+ ++++|||||+|.+.++|.+| + .++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~A----l-~l~ 243 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFA----M-ALD 243 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhh----h-cCC
Confidence 3445555555 99999999999985 23444444 34678999999999999997 5 799
Q ss_pred Ceeecceeehhhhhh----------------------------------ccCCeeEecCCCccCCHHHHHHHHhcCCCeE
Q psy15852 167 NHVINNKKIEAKKAK----------------------------------AKSGKIFVGGLSPEMKDEEIKAHFAQFGNII 212 (661)
Q Consensus 167 ~~~i~g~~i~v~~~~----------------------------------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~ 212 (661)
+..+.|+.|.|.... ...++|||+|||..+++++|+++|++||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 999999999886421 1126899999999999999999999999999
Q ss_pred EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 213 ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 213 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.+.|+.+..+|.++|||||+|.+.++|.+||+.+ +..|.|+.|.|.++...
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999989999999999999999999999987 68999999999998753
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.1e-26 Score=258.04 Aligned_cols=289 Identities=17% Similarity=0.200 Sum_probs=188.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcC------------CCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQF------------GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQK 249 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~ 249 (661)
...++|||+|||+.+++++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|.+||+..+..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 345899999999999999999999875 34555555 345899999999999999999766889
Q ss_pred cCCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q psy15852 250 INDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGP 329 (661)
Q Consensus 250 ~~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (661)
|.|+.|.|............. +
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~----------------------------------------------------------~ 268 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQIT----------------------------------------------------------P 268 (509)
T ss_pred eeCceeEecCccccCCccccC----------------------------------------------------------C
Confidence 999999997543321100000 0
Q ss_pred CCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhh
Q psy15852 330 MVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAF 409 (661)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f 409 (661)
......+... . ..... ..... . ...-...|+|.++...+++++|+++|
T Consensus 269 ~~~~~~~~~~--~--------~~~~~--~~~~~----~----------------~~~~~~~l~v~nlp~~~~~~~l~~~f 316 (509)
T TIGR01642 269 EVSQKNPDDN--A--------KNVEK--LVNST----T----------------VLDSKDRIYIGNLPLYLGEDQIKELL 316 (509)
T ss_pred CCCCCCCccc--c--------ccccc--ccccc----c----------------CCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0000000000 0 00000 00000 0 00011235555554459999999999
Q ss_pred hccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcE
Q psy15852 410 LTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKE 488 (661)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~ 488 (661)
..| |.|..+.++.+..+++++|||||+|.+.++|..|| .+++..+.|+.
T Consensus 317 ~~~------------------------------G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 317 ESF------------------------------GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred Hhc------------------------------CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 988 67999999999999999999999999999999999 56778899999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCc
Q psy15852 489 VDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLT 568 (661)
Q Consensus 489 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 568 (661)
|.|.++............ .+ ..|..
T Consensus 367 l~v~~a~~~~~~~~~~~~------------------------------~~-------------------------~~~~~ 391 (509)
T TIGR01642 367 LHVQRACVGANQATIDTS------------------------------NG-------------------------MAPVT 391 (509)
T ss_pred EEEEECccCCCCCCcccc------------------------------cc-------------------------ccccc
Confidence 999988754221100000 00 00000
Q ss_pred ccCCCccccccCCCCccccccccCCCeEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEEeec---CCCCCcc
Q psy15852 569 VSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDK----------ITEELKEHFSKYGEIENVTLKSD---PNTGRSR 635 (661)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~----------te~dL~~~F~~~G~I~~v~i~~d---~~tg~s~ 635 (661)
......... ...........|++.|+++.. ..++|+++|++||.|++|+|+++ ..++.+.
T Consensus 392 ~~~~~~~~~-------~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~ 464 (509)
T TIGR01642 392 LLAKALSQS-------ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGV 464 (509)
T ss_pred cccccchhh-------hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCc
Confidence 000000000 000001124678999997521 23689999999999999999975 3346778
Q ss_pred cEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 636 GFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 636 G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
|+|||+|.++++|.+|+..+|..
T Consensus 465 G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 465 GKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred ceEEEEECCHHHHHHHHHHcCCC
Confidence 99999999999999999998753
No 25
>KOG0145|consensus
Probab=99.95 E-value=7.9e-27 Score=219.24 Aligned_cols=228 Identities=21% Similarity=0.258 Sum_probs=187.7
Q ss_pred CCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeecccc----------cccccccccce
Q psy15852 29 DDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHH----------YYLFDQILRTH 91 (661)
Q Consensus 29 ~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~----------~~l~~~~~r~~ 91 (661)
....|.|--||..+|+ |.|+.+| ..| +|.+|+++||..+.+ |.+...+. .+|-...++.+
T Consensus 40 skTNLIvNYLPQ~MTq-dE~rSLF~SiG--eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQ-DELRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred ccceeeeeecccccCH-HHHHHHhhccc--ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3456999999999999 9999999 999 999999999987776 33333222 12222223333
Q ss_pred eeeee--cCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe
Q psy15852 92 FFYIM--EAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH 168 (661)
Q Consensus 92 ~~~~~--~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~ 168 (661)
++... .-+...+|+..+| .+|..||+++|++||.|..-+|..|..||.+||.+||.|+..++|+.| |..+||+
T Consensus 117 yARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A----Ik~lNG~ 192 (360)
T KOG0145|consen 117 YARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA----IKGLNGQ 192 (360)
T ss_pred eccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH----HHhccCC
Confidence 32211 1245567777777 999999999999999999999999999999999999999999999999 9999998
Q ss_pred eecc--eeehhhhhhccC--------------------------------------------------------------
Q psy15852 169 VINN--KKIEAKKAKAKS-------------------------------------------------------------- 184 (661)
Q Consensus 169 ~i~g--~~i~v~~~~~~~-------------------------------------------------------------- 184 (661)
.-.| .+|.|+++..++
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp 272 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLP 272 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccC
Confidence 7655 345555443221
Q ss_pred ------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 185 ------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 185 ------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
.+|||-||.++++|.-|+++|.+||.|..|++++|..|.++|||+||...+.++|..||..+ +..+.+|.|.|
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998 57899999999
Q ss_pred EeccCC
Q psy15852 258 KKATPK 263 (661)
Q Consensus 258 ~~a~~k 263 (661)
.+...+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 987665
No 26
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=5.3e-26 Score=237.25 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=143.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||+|++|+|++|..+++++|||||+|.++++|++||+.+ +..+.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34589999999999999999999999999999999999999999999999999999999999887 68899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15852 261 TPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEV 340 (661)
Q Consensus 261 ~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (661)
.+....
T Consensus 185 ~p~~~~-------------------------------------------------------------------------- 190 (346)
T TIGR01659 185 RPGGES-------------------------------------------------------------------------- 190 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 642210
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCC
Q psy15852 341 DVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT 420 (661)
Q Consensus 341 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~ 420 (661)
.-...|+|.++.+.+++++|+++|..|
T Consensus 191 ---------------------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~f-------- 217 (346)
T TIGR01659 191 ---------------------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKY-------- 217 (346)
T ss_pred ---------------------------------------------cccceeEEeCCCCcccHHHHHHHHHhc--------
Confidence 000124455555559999999999888
Q ss_pred cccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCC--cEEEEecCCCC
Q psy15852 421 TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKIND--KEVDVKKATPK 497 (661)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g--~~i~v~~a~~~ 497 (661)
|+|+.+.++.|+.+++++|||||+|.+.++|++||+ +++..+.+ +.|.|+++...
T Consensus 218 ----------------------G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 218 ----------------------GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred ----------------------CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 789999999999999999999999999999999995 55565655 68899888766
Q ss_pred CCC
Q psy15852 498 PEP 500 (661)
Q Consensus 498 ~~~ 500 (661)
...
T Consensus 276 ~~~ 278 (346)
T TIGR01659 276 GKA 278 (346)
T ss_pred ccc
Confidence 443
No 27
>KOG4211|consensus
Probab=99.94 E-value=8.3e-24 Score=216.74 Aligned_cols=443 Identities=17% Similarity=0.189 Sum_probs=246.0
Q ss_pred EEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhc
Q psy15852 103 VSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKA 182 (661)
Q Consensus 103 ~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~ 182 (661)
=..+||+++|++||.++|+.++ |+++.+.+. +|+..|-|||+|.++|++++| ++.+...+..+.|.|-.+..
T Consensus 14 r~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~A-----lkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 14 RLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKA-----LKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred EecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHH-----HHhhHHHhCCceEEEEccCC
Confidence 3567778999999999999995 778777663 699999999999999999996 55556666666676655422
Q ss_pred c----------------CCeeEecCCCccCCHHHHHHHHhcCCCeEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 183 K----------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIE-TEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 183 ~----------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
. .-.|.+++||+.|+++||.++|+..-.|.. |.++.+.. +++.|-|||+|++.+.|++||..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH
Confidence 1 246899999999999999999998776655 44555544 78999999999999999999999
Q ss_pred CCCccCCeEEEEEeccCCCCCCCC-----CCCCC----C-CCCCCCCC-CCCCCCCC---CCCCCCCCCCCCCCCCcccc
Q psy15852 246 PKQKINDKEVDVKKATPKPEPFGV-----RGGRG----G-RGGRGGRG-GRMAGGYG---GYGGYGGGYGGILYKPLLFY 311 (661)
Q Consensus 246 ~~~~~~g~~i~V~~a~~k~~~~~~-----~~~~~----~-~g~~~g~~-~~~~~~~g---~~~g~~~~~~~~~~~~~~~~ 311 (661)
....|.-|-|+|-.+.....+..- ..++. . .+.+++.. +...+... .++.+.+++ .++.+....
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~--~g~~~~~~~ 242 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGY--YGFSRYPSL 242 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCc--cccccCccc
Confidence 988899999999776543322110 00000 0 00111100 00000000 001111111 111111111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccc
Q psy15852 312 ELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNL 391 (661)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 391 (661)
.. ....... ...+...+..... .+... ....+..++....+.
T Consensus 243 ~d-~~~~gs~-~~~~~~~~~~~~g--~~~~g----------------------------------~~g~~~~~~~~g~fv 284 (510)
T KOG4211|consen 243 QD-YGNFGSY-GGGRDPNYPVSSG--PHRQG----------------------------------GAGDYGNGGPGGHFV 284 (510)
T ss_pred cc-ccccccc-ccccccccCCCCC--cccCC----------------------------------CcccccCCCCCCcee
Confidence 00 0000000 0000000000000 00000 000111122222222
Q ss_pred cccCCCCCcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChH
Q psy15852 392 LLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHES 471 (661)
Q Consensus 392 ~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e 471 (661)
-+..+.-..++.++..+|++..| ..+.+-.. .+++..|-|+|.|.+.+
T Consensus 285 ~MRGlpy~a~~~di~nfFspl~p-------------------------------~~v~i~ig-~dGr~TGEAdveF~t~e 332 (510)
T KOG4211|consen 285 HMRGLPYDATENDIANFFSPLNP-------------------------------YRVHIEIG-PDGRATGEADVEFATGE 332 (510)
T ss_pred eecCCCccCCCcchhhhcCCCCc-------------------------------eeEEEEeC-CCCccCCcceeecccch
Confidence 23333333778888888887643 45554442 45777899999999999
Q ss_pred HHHHHHhCCCCcCCCcEEEEecCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcccccccc
Q psy15852 472 VVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGR---GGRGGRGGRMAGGYGGYGG-YGGGYGELDYLQLWQFFD 547 (661)
Q Consensus 472 ~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~gg~~~-~g~~~~~~~~~~~~~~~~ 547 (661)
+|..||...+..+..+.|++-.-.....+.+..+...+. .+..+.+|.+.+ +.+.+ ++++.+...+.++++..
T Consensus 333 dav~Amskd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~--g~~~gG~~g~~~~~~~~G~~~~~- 409 (510)
T KOG4211|consen 333 DAVGAMGKDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYAS--GSYGGGGNGGGGRGSPYGRPSDG- 409 (510)
T ss_pred hhHhhhccCCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccc--cccccCCCCCccccCCCCCCccc-
Confidence 999999888888999988875543221111110000000 000000111000 11111 11111111111111111
Q ss_pred ccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee
Q psy15852 548 WISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKS 627 (661)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~ 627 (661)
..+..... ...|.. ....+ ....-.|-.+.+|+-.++.|+.++|.++++- .|.|.+
T Consensus 410 ~~~~~~~G-------y~g~~~--~~~~~--------------~~e~~~~~~rgap~~a~eadv~d~~~~~~~a-~~~~~y 465 (510)
T KOG4211|consen 410 YSSPGGGG-------YSGPRG--YGRGP--------------QNEHFVIRMRGAPFRASEADVYDFFHPIRPA-QVELLY 465 (510)
T ss_pred ccCCCCCC-------CcCccc--CCCCc--------------cccccccCcCCCCccccccchhhcccccCcc-cccccc
Confidence 11111000 000000 00000 0112356678899999999999999999876 899999
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 628 DPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 628 d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
|+. ....|-|-|.|.+.++++.|+.+
T Consensus 466 d~~-~~~~~~a~~~~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 466 DHQ-FQRSGDARVIFYNRKDYQDALMK 491 (510)
T ss_pred ccc-ccccCceeEEEechhhhHHHHHh
Confidence 998 55599999999999999999986
No 28
>KOG0144|consensus
Probab=99.93 E-value=1.2e-25 Score=225.60 Aligned_cols=229 Identities=22% Similarity=0.320 Sum_probs=191.8
Q ss_pred CCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeecccc-----ccccccccc------c
Q psy15852 29 DDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHH-----YYLFDQILR------T 90 (661)
Q Consensus 29 ~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~-----~~l~~~~~r------~ 90 (661)
+.-|||||.||..++| ++|+++| +|| .|.+|.+++|..+.. |++...++ ..|++...- .
T Consensus 33 ~~vKlfVgqIprt~sE-~dlr~lFe~yg--~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASE-KDLRELFEKYG--NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccH-HHHHHHHHHhC--ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 5678999999999999 9999999 999 999999999988876 44444433 122221111 1
Q ss_pred --eeee-eecC---CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHH
Q psy15852 91 --HFFY-IMEA---KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164 (661)
Q Consensus 91 --~~~~-~~~~---~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~ 164 (661)
.+++ +.++ .+++|++.+...+||.|++++|++||.|++|.|++|.. +.+||||||.|.+.|.|..| +..
T Consensus 110 qvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~A----ika 184 (510)
T KOG0144|consen 110 QVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAA----IKA 184 (510)
T ss_pred eecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHH----HHh
Confidence 1111 2222 56788888888999999999999999999999999976 99999999999999999999 999
Q ss_pred hCCe-eecc--eeehhhhhhccC---------------------------------------------------------
Q psy15852 165 EGNH-VINN--KKIEAKKAKAKS--------------------------------------------------------- 184 (661)
Q Consensus 165 ~~~~-~i~g--~~i~v~~~~~~~--------------------------------------------------------- 184 (661)
+|+. .+.| .+|.|++++++.
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~ 264 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLP 264 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccccc
Confidence 9875 4444 677787776543
Q ss_pred --------------------------------------------------------------------------------
Q psy15852 185 -------------------------------------------------------------------------------- 184 (661)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (661)
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy15852 185 -------------------------------------------------------------------------------- 184 (661)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (661)
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.+|||.+||.+.-+.+|-..|..||.|.+.++..|+.|+.++.|+||.|++..+|..||..+ +..++.++++|.....+
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 57999999999999999999999999999999999999999999999999999999999998 57899999999988776
Q ss_pred CC
Q psy15852 264 PE 265 (661)
Q Consensus 264 ~~ 265 (661)
..
T Consensus 505 ~n 506 (510)
T KOG0144|consen 505 NN 506 (510)
T ss_pred CC
Confidence 53
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.4e-24 Score=238.01 Aligned_cols=224 Identities=17% Similarity=0.273 Sum_probs=173.7
Q ss_pred CCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc------eeeecccc---------ccccccccccee
Q psy15852 29 DDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP------LTVSCSHH---------YYLFDQILRTHF 92 (661)
Q Consensus 29 ~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~------~~~~~~~~---------~~l~~~~~r~~~ 92 (661)
+.++|||+|||+.+++ ++|+++| ++| .|.++.+++|..+.. |.|...+. ..+.+.......
T Consensus 88 ~~~~l~V~nlp~~~~~-~~l~~~F~~~G--~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 88 DDRTVFVLQLALKARE-RDLYEFFSKVG--KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 5789999999999999 9999999 999 999999999865543 33332221 011111111100
Q ss_pred e---------------eeecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 93 F---------------YIMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 93 ~---------------~~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
. ...+...++++.++++.+++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 0 0011123444444445999999999999999999999999999899999999999999999999
Q ss_pred hHHHHHHhCCeeecceeehhhhhhc-------------------------------------------------------
Q psy15852 158 SVEDVIAEGNHVINNKKIEAKKAKA------------------------------------------------------- 182 (661)
Q Consensus 158 ~~~~~~~~~~~~i~g~~i~v~~~~~------------------------------------------------------- 182 (661)
+..+++..|.|++|.|.++..
T Consensus 245 ----~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 245 ----LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred ----HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 889999999999999987321
Q ss_pred ----------------------------------------cCCeeEecCCCccCC----------HHHHHHHHhcCCCeE
Q psy15852 183 ----------------------------------------KSGKIFVGGLSPEMK----------DEEIKAHFAQFGNII 212 (661)
Q Consensus 183 ----------------------------------------~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~i~ 212 (661)
..++|+|.||....+ .+||++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 014577888844333 368999999999999
Q ss_pred EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 213 ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 213 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.|.|.. ....|++||+|.++++|.+|++.+ +..++|+.|.+.+....
T Consensus 401 ~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDT----KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeC----CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999864 345799999999999999999998 68999999999988654
No 30
>KOG4212|consensus
Probab=99.91 E-value=2.8e-22 Score=201.15 Aligned_cols=79 Identities=16% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCeeEecCCCccCCHHHHHHHHh-cCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEecc
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFA-QFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKAT 261 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~ 261 (661)
.+.+||.|||+++.+.+|+++|. +.|+|+.|.++.|.. |+++|+|.|+|+++|.++||++.++ +.+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999995 589999999999875 9999999999999999999999985 78999999998766
Q ss_pred CC
Q psy15852 262 PK 263 (661)
Q Consensus 262 ~k 263 (661)
..
T Consensus 123 d~ 124 (608)
T KOG4212|consen 123 DE 124 (608)
T ss_pred ch
Confidence 53
No 31
>KOG0131|consensus
Probab=99.90 E-value=1e-23 Score=189.13 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=146.7
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++|++|++ .++++.|.++|-+.|+|.++++++|+.+...+|||||+|.++|+|+-| +.-+|...+.|++|+|.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYA----ikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYA----IKILNMVKLYGRPIRVN 84 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHH----HHHHHHHHhcCceeEEE
Confidence 4455555555 999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred hhhcc------CCeeEecCCCccCCHHHHHHHHhcCCCeEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc
Q psy15852 179 KAKAK------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIE-TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI 250 (661)
Q Consensus 179 ~~~~~------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~ 250 (661)
.+... ..+|||+||.+.++|..|.+.|+.||.+.. -++++++.||.++|||||.|.+.+.+.+|+..+ ++.+
T Consensus 85 kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 85 KASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred ecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 87632 258999999999999999999999998765 488999999999999999999999999999998 6889
Q ss_pred CCeEEEEEeccCCCC
Q psy15852 251 NDKEVDVKKATPKPE 265 (661)
Q Consensus 251 ~g~~i~V~~a~~k~~ 265 (661)
..++|.|.++..+..
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999999987653
No 32
>KOG0124|consensus
Probab=99.89 E-value=1.4e-21 Score=191.90 Aligned_cols=160 Identities=19% Similarity=0.453 Sum_probs=146.7
Q ss_pred EEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 102 MVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 102 ~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
-+|++.+ ++..|+.|+..|..||+|++|.+..|+.|+++||||||+|+-+|.|+.| ...+|+..+.||.|+|.+.
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLA----lEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLA----LEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHH----HHHhccccccCccccccCC
Confidence 3455554 5999999999999999999999999999999999999999999999999 8999999999999999865
Q ss_pred hccC----------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q psy15852 181 KAKS----------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244 (661)
Q Consensus 181 ~~~~----------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 244 (661)
.... ++|||..+-++++++||+.+|+.||+|..|.+.+++.++.++||+|++|.+..+...|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 4322 789999999999999999999999999999999999989999999999999999999999
Q ss_pred hCC-CccCCeEEEEEeccCCCC
Q psy15852 245 NPK-QKINDKEVDVKKATPKPE 265 (661)
Q Consensus 245 ~~~-~~~~g~~i~V~~a~~k~~ 265 (661)
.++ ..++|+.|+|..+...+.
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hcchhhcccceEecccccCCCc
Confidence 997 689999999998876655
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=2.8e-22 Score=219.60 Aligned_cols=181 Identities=18% Similarity=0.365 Sum_probs=147.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.+ +..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 44589999999999999999999999999999999999999999999999999999999999987 68899999999853
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15852 261 TPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEV 340 (661)
Q Consensus 261 ~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (661)
....... +....
T Consensus 185 ~~~p~a~-------------------------------------------------------------------~~~~~- 196 (612)
T TIGR01645 185 SNMPQAQ-------------------------------------------------------------------PIIDM- 196 (612)
T ss_pred ccccccc-------------------------------------------------------------------ccccc-
Confidence 3211000 00000
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCC
Q psy15852 341 DVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT 420 (661)
Q Consensus 341 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~ 420 (661)
.. .+ .....++++.++.+.+++++|+++|+.|
T Consensus 197 ------------~~---------------~~-------------~~~~~rLfVgnLp~~vteedLk~lFs~F-------- 228 (612)
T TIGR01645 197 ------------VQ---------------EE-------------AKKFNRIYVASVHPDLSETDIKSVFEAF-------- 228 (612)
T ss_pred ------------cc---------------cc-------------ccccceEEeecCCCCCCHHHHHHHHhhc--------
Confidence 00 00 0001245666666779999999999888
Q ss_pred cccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCCC
Q psy15852 421 TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKPE 499 (661)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~~ 499 (661)
|+|.+++++.|..+++++|||||.|.+.++|.+|+ ..++..++|+.|.|.++.+.+.
T Consensus 229 ----------------------G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 229 ----------------------GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred ----------------------CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 78999999999999999999999999999999999 5556889999999999987654
Q ss_pred C
Q psy15852 500 P 500 (661)
Q Consensus 500 ~ 500 (661)
.
T Consensus 287 ~ 287 (612)
T TIGR01645 287 A 287 (612)
T ss_pred c
Confidence 3
No 34
>KOG0110|consensus
Probab=99.88 E-value=2.3e-22 Score=214.32 Aligned_cols=250 Identities=18% Similarity=0.291 Sum_probs=193.1
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
..+++++++|+| .+..++|.++|..||+|..|.++.. |. -++|+|.++.+|.+| ...+....+...++.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~A----frklaysr~k~~ply 452 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKA----FRKLAYSRFKSAPLY 452 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHH----HHHhchhhhccCccc
Confidence 345788888888 9999999999999999999966632 22 389999999999999 666666666655555
Q ss_pred hhhhhcc-------------------------------------------------------CCeeEecCCCccCCHHHH
Q psy15852 177 AKKAKAK-------------------------------------------------------SGKIFVGGLSPEMKDEEI 201 (661)
Q Consensus 177 v~~~~~~-------------------------------------------------------~~~lfV~nLp~~~te~~L 201 (661)
+.|+... .++|||+||+++++.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 4443100 034999999999999999
Q ss_pred HHHHhcCCCeEEEEeccCCCC---CCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCCCCCCCCCCCCCC
Q psy15852 202 KAHFAQFGNIIETEMPYDKSK---SQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEPFGVRGGRGGRG 277 (661)
Q Consensus 202 ~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~~~~~~~~~~~~g 277 (661)
..+|.+.|.|.++.|...++. -.+.|||||+|.+.++|+.|++.| ++.++|+.|.|+++..++....
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~--------- 603 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV--------- 603 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc---------
Confidence 999999999999988876542 135599999999999999999998 5899999999999884332100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCC
Q psy15852 278 GRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNS 357 (661)
Q Consensus 278 ~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 357 (661)
| +..
T Consensus 604 -------------------------------------------------------------------------g-K~~-- 607 (725)
T KOG0110|consen 604 -------------------------------------------------------------------------G-KKK-- 607 (725)
T ss_pred -------------------------------------------------------------------------c-ccc--
Confidence 0 000
Q ss_pred CCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcccccCCcccchhhcccccccch
Q psy15852 358 DENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHME 436 (661)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (661)
+.+ .-... |+..++|. .+-.+++.+|..|
T Consensus 608 ---------~~k----------------k~~tK-IlVRNipFeAt~rEVr~LF~aF------------------------ 637 (725)
T KOG0110|consen 608 ---------SKK----------------KKGTK-ILVRNIPFEATKREVRKLFTAF------------------------ 637 (725)
T ss_pred ---------ccc----------------cccce-eeeeccchHHHHHHHHHHHhcc------------------------
Confidence 000 00112 34445566 8888899999888
Q ss_pred hhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhC-CCCcCCCcEEEEecCCCCC
Q psy15852 437 VTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN-PKQKINDKEVDVKKATPKP 498 (661)
Q Consensus 437 ~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~-~~~~l~g~~i~v~~a~~~~ 498 (661)
|.+..|+||.....+.++|||||.|-++.+|..|+.. ....|-|++|.+.||....
T Consensus 638 ------GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 638 ------GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ------cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 8899999999877778899999999999999999944 3577999999999988653
No 35
>KOG4205|consensus
Probab=99.86 E-value=1.6e-21 Score=197.10 Aligned_cols=167 Identities=34% Similarity=0.613 Sum_probs=155.6
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++|+.++.++++++.|++.|++||+|.+|.+++|+.++++|||+||+|++++...+ ++....+.|.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~-----vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDA-----VLNARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchhe-----eecccccccCCccccc
Confidence 45789999999999999999999999999999999999999999999999999999999 6777889999999999
Q ss_pred hhhhccC-----------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 178 KKAKAKS-----------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 178 ~~~~~~~-----------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
+.+.++. ++|||++||.++++++|+++|.+||.|..+.++.|..+++++||+||.|.+++++.+++...
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred eeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccc
Confidence 8886653 48999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCccCCeEEEEEeccCCCCCCCC
Q psy15852 247 KQKINDKEVDVKKATPKPEPFGV 269 (661)
Q Consensus 247 ~~~~~g~~i~V~~a~~k~~~~~~ 269 (661)
-+.|+++.+.|+.|.++......
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeeecCceeeEeeccchhhcccc
Confidence 89999999999999999876543
No 36
>KOG4211|consensus
Probab=99.85 E-value=4.6e-20 Score=189.43 Aligned_cols=313 Identities=21% Similarity=0.269 Sum_probs=192.6
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
.-|.+++||+++|++||.++|+.++ |+++.+.+. +|+..|-|||+|.+.+++++|+++....+..|-|+|-.+...+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 4578899999999999999999986 888777654 5899999999999999999999998888999999999887665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCc
Q psy15852 265 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTG 344 (661)
Q Consensus 265 ~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (661)
...-.+.. .|...
T Consensus 88 ~d~~~~~~-------------------------------------------------------g~~s~------------ 100 (510)
T KOG4211|consen 88 ADWVMRPG-------------------------------------------------------GPNSS------------ 100 (510)
T ss_pred ccccccCC-------------------------------------------------------CCCCC------------
Confidence 32111000 00000
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcccccCCccc
Q psy15852 345 VIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEH 423 (661)
Q Consensus 345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~ 423 (661)
..+-++--..+|. +++++|.++|+...
T Consensus 101 ------------------------------------------~~d~vVRLRGLPfscte~dI~~FFaGL~---------- 128 (510)
T KOG4211|consen 101 ------------------------------------------ANDGVVRLRGLPFSCTEEDIVEFFAGLE---------- 128 (510)
T ss_pred ------------------------------------------CCCceEEecCCCccCcHHHHHHHhcCCc----------
Confidence 0011222234566 89999999998763
Q ss_pred chhhcccccccchhhccCCceeEE--eeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCCC
Q psy15852 424 MVLVTGTDMMHMEVTEAVPMEIIE--TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501 (661)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~G~i~~--~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~ 501 (661)
|.. +-+++|.. +++.|-|||+|.+++.|++|+..+...|..+.|+|-++.......
T Consensus 129 ---------------------Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 129 ---------------------IVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred ---------------------ccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHh
Confidence 333 33555544 558899999999999999999999999999999998875443221
Q ss_pred CC--CCCCCCC-CCCC----CCCCCC-CCCCC------CCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCC
Q psy15852 502 GV--RGGRGGR-GGRG----GRGGRM-AGGYG------GYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPL 567 (661)
Q Consensus 502 ~~--~~~~~~~-~~~~----~~~~~~-~~g~g------g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 567 (661)
.. ..+..++ +.+- ++++.. ..+.+ -++.++.++ +++...+...+....... ..+.....|.
T Consensus 187 ~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~--~g~~~~~~~~d~~~~gs~---~~~~~~~~~~ 261 (510)
T KOG4211|consen 187 AAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGY--YGFSRYPSLQDYGNFGSY---GGGRDPNYPV 261 (510)
T ss_pred hccccccccCCCCccccccCCccccccccccCCCccccccccccCCc--cccccCcccccccccccc---ccccccccCC
Confidence 11 0000110 0000 011000 00000 000000010 001111111110000000 0000000110
Q ss_pred cccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHH
Q psy15852 568 TVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 647 (661)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~ 647 (661)
. +..+.. ...............+..++||++.++.+|.++|++.-.+ .|+|-..++ |+..|.|+|+|.|.++
T Consensus 262 ~---~g~~~~---g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~d-Gr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 262 S---SGPHRQ---GGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPD-GRATGEADVEFATGED 333 (510)
T ss_pred C---CCcccC---CCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCC-CccCCcceeecccchh
Confidence 0 000000 1111111112233678999999999999999999999666 999998876 9999999999999999
Q ss_pred HHHHHHh
Q psy15852 648 LEKASVE 654 (661)
Q Consensus 648 A~~A~~~ 654 (661)
|..||.+
T Consensus 334 av~Amsk 340 (510)
T KOG4211|consen 334 AVGAMGK 340 (510)
T ss_pred hHhhhcc
Confidence 9999986
No 37
>KOG0147|consensus
Probab=99.83 E-value=6.7e-20 Score=190.75 Aligned_cols=157 Identities=23% Similarity=0.400 Sum_probs=140.2
Q ss_pred EEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhc
Q psy15852 104 SHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKA 182 (661)
Q Consensus 104 ~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~ 182 (661)
+...+. ..+..+|.++|+.+|+|.+|+++.|+.+++++|.|||+|.+.++...| ..|.|+.+.|.+|.|+....
T Consensus 183 f~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~a-----iaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 183 FCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLA-----IALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhH-----hhhcCCcccCceeEecccHH
Confidence 333343 788999999999999999999999999999999999999999999995 68999999999999876532
Q ss_pred cC-------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q psy15852 183 KS-------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243 (661)
Q Consensus 183 ~~-------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al 243 (661)
.. .+|||+||-+++++++|+.+|++||.|+.|.+++|..||.++||+||+|.+.++|.+|+
T Consensus 258 eknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~ 337 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKAL 337 (549)
T ss_pred HHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHH
Confidence 21 34999999999999999999999999999999999999999999999999999999998
Q ss_pred HhC-CCccCCeEEEEEeccCCCC
Q psy15852 244 KNP-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 244 ~~~-~~~~~g~~i~V~~a~~k~~ 265 (661)
..+ +..|-|+.|+|.....+..
T Consensus 338 e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 338 EQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHhccceecCceEEEEEeeeecc
Confidence 887 6899999999987766543
No 38
>KOG0109|consensus
Probab=99.82 E-value=2.9e-20 Score=178.32 Aligned_cols=150 Identities=21% Similarity=0.432 Sum_probs=136.5
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++||++|+..+++.+|+.+|++||+|++|.|+++ ||||..++...|+.| |..|++..|+|..|.|+.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaeda----irNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDA----IRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHH----HhhcccceecceEEEEEec
Confidence 5666666669999999999999999999999986 999999999999999 9999999999999999998
Q ss_pred hccC---CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 181 KAKS---GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 181 ~~~~---~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
+.++ .+|+|+||.+.++..+|+..|++||+|.+|+|+ ++|+||.|+..++|..|++.+ +..++|++++
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceee
Confidence 8773 689999999999999999999999999999997 679999999999999999998 6899999999
Q ss_pred EEeccCCCCCCCCC
Q psy15852 257 VKKATPKPEPFGVR 270 (661)
Q Consensus 257 V~~a~~k~~~~~~~ 270 (661)
|....++-....+.
T Consensus 144 vq~stsrlrtapgm 157 (346)
T KOG0109|consen 144 VQLSTSRLRTAPGM 157 (346)
T ss_pred eeeeccccccCCCC
Confidence 99998876554333
No 39
>KOG0146|consensus
Probab=99.82 E-value=1.5e-19 Score=171.04 Aligned_cols=94 Identities=24% Similarity=0.393 Sum_probs=81.3
Q ss_pred ceeehhhhhhcc-----CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 172 NKKIEAKKAKAK-----SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 172 g~~i~v~~~~~~-----~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
+|+|.|+++..+ +++|||+-|.+.-.|+|++.+|..||.|++|.+.+..+ |.+||+|||+|.+..+|+.||..+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHh
Confidence 467888887654 47899999999999999999999999999999999877 899999999999999999999997
Q ss_pred -C-CccCC--eEEEEEeccCCCCC
Q psy15852 247 -K-QKIND--KEVDVKKATPKPEP 266 (661)
Q Consensus 247 -~-~~~~g--~~i~V~~a~~k~~~ 266 (661)
+ .++-| ..|.|+++....++
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred cccccCCCCccceEEEeccchHHH
Confidence 2 56666 56889988776553
No 40
>KOG1190|consensus
Probab=99.82 E-value=4.1e-18 Score=170.53 Aligned_cols=396 Identities=15% Similarity=0.136 Sum_probs=236.5
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..+++...|+| +++|+||.+++..||.|+.+.+.+.++ -||++|.++++|..- .. ....-...+.+++|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtm-v~-~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTM-VN-YYTSVTPVLRGQPIYI 98 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhhe-ee-cccccCccccCcceee
Confidence 45677777777 999999999999999999999988554 799999999999872 00 0111122344555554
Q ss_pred hhhhcc---------------------------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeE
Q psy15852 178 KKAKAK---------------------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNII 212 (661)
Q Consensus 178 ~~~~~~---------------------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~ 212 (661)
+++... --+++|.|+-+.++-+-|..+|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 442110 02578899999999999999999999998
Q ss_pred EEEeccCCCCCCcCcE-EEEEeCCHHHHHHHHHhC-CCccC-C-eEEEEEeccCCCCCC--CCCCCCCCCCCCCCCCCCC
Q psy15852 213 ETEMPYDKSKSQRKNF-CFITFEHESVVIDLLKNP-KQKIN-D-KEVDVKKATPKPEPF--GVRGGRGGRGGRGGRGGRM 286 (661)
Q Consensus 213 ~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~~-~~~~~-g-~~i~V~~a~~k~~~~--~~~~~~~~~g~~~g~~~~~ 286 (661)
.|.-.. ++.+| |.|+|.+.+.|+.|-..+ +..|. | ..|+|.+++-..-.- .....|..-.
T Consensus 179 KIiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTn--------- 244 (492)
T KOG1190|consen 179 KIITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTN--------- 244 (492)
T ss_pred EEEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccC---------
Confidence 876553 23455 899999999999998776 44332 3 556665543211100 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCC
Q psy15852 287 AGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSH 366 (661)
Q Consensus 287 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 366 (661)
.+-+.| -+..+.++.+- .... ..|..+. .|. ..+ .+.... +.+.
T Consensus 245 -----p~LP~g--d~~p~l~~~~~-----aa~~-------~~~~~~g-~p~------aip---~~~~~a----~~a~--- 288 (492)
T KOG1190|consen 245 -----PDLPVG--DGQPSLDQLMA-----AAFG-------SVPAVHG-APL------AIP---SGAAGA----NAAD--- 288 (492)
T ss_pred -----CCCCCC--ccccccchhhh-----cccc-------ccccccC-Ccc------cCC---ccchhh----cccc---
Confidence 000000 00000000000 0000 0000000 000 000 000000 0000
Q ss_pred CChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCcee
Q psy15852 367 PSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEI 445 (661)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i 445 (661)
.. .+ .-+ ...++++.++.+. +|++.|..+|..| |+|
T Consensus 289 ------~~-~~-----~~~-~n~vllvsnln~~~VT~d~LftlFgvY------------------------------GdV 325 (492)
T KOG1190|consen 289 ------GK-IE-----SPS-ANVVLLVSNLNEEAVTPDVLFTLFGVY------------------------------GDV 325 (492)
T ss_pred ------cc-cc-----cCC-CceEEEEecCchhccchhHHHHHHhhh------------------------------cce
Confidence 00 00 000 1346777788887 9999999999888 889
Q ss_pred EEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 446 IETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGY 524 (661)
Q Consensus 446 ~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 524 (661)
.+|+|.+++. .-|.|++.+...|+-|+ .+.++.+.|+.|+|..++-.....+..+.. .
T Consensus 326 qRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~-d--------------- 384 (492)
T KOG1190|consen 326 QRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQE-D--------------- 384 (492)
T ss_pred EEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCc-c---------------
Confidence 9999988533 67999999999999999 566799999999998766433221100000 0
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCC
Q psy15852 525 GGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVD 604 (661)
Q Consensus 525 gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 604 (661)
.++ ..++.. .|. ..+..+..+.+.....+..+|...|+|.+
T Consensus 385 ------------~gl-----T~dy~~--------------spL--------hrfkkpgsKN~~ni~PpsatlHlsnip~s 425 (492)
T KOG1190|consen 385 ------------QGL-----TKDYGN--------------SPL--------HRFKKPGSKNYQNIFPPSATLHLSNIPPS 425 (492)
T ss_pred ------------ccc-----cccCCC--------------Cch--------hhccCcccccccccCCchhheeeccCCcc
Confidence 000 000000 011 01222223333334455678999999999
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 605 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 605 ~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
++|+||+.+|..-|-..+....-. +.+=+|.+++.++|+|..|+-.+|-+|
T Consensus 426 vsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~ 476 (492)
T KOG1190|consen 426 VSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHY 476 (492)
T ss_pred cchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhcccccccc
Confidence 999999999999988867666542 234499999999999999999886555
No 41
>KOG4205|consensus
Probab=99.81 E-value=1.5e-19 Score=182.97 Aligned_cols=178 Identities=28% Similarity=0.460 Sum_probs=153.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||++|+++++++.|+++|.+||+|.+|.+++|+.+++++||+||+|++++...++|....++|+|+.|.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 46899999999999999999999999999999999999999999999999999999999998889999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
+.++.... .+
T Consensus 85 r~~~~~~~-------------------------------------------------------------------~~--- 94 (311)
T KOG4205|consen 85 REDQTKVG-------------------------------------------------------------------RH--- 94 (311)
T ss_pred cccccccc-------------------------------------------------------------------cc---
Confidence 77542110 00
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTE 422 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~ 422 (661)
..+..+++|+++ +.+++++++++|.++
T Consensus 95 ~~tkkiFvGG~~-------------------------------------------~~~~e~~~r~yfe~~---------- 121 (311)
T KOG4205|consen 95 LRTKKIFVGGLP-------------------------------------------PDTTEEDFKDYFEQF---------- 121 (311)
T ss_pred cceeEEEecCcC-------------------------------------------CCCchHHHhhhhhcc----------
Confidence 022335555443 457788888888777
Q ss_pred cchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCCCC
Q psy15852 423 HMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFG 502 (661)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~~ 502 (661)
|.|..+.+++|..+.+++||+||.|++++++.+++.+..+.|+++.++|++|.++..+..
T Consensus 122 --------------------g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 122 --------------------GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred --------------------ceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhccc
Confidence 779999999999999999999999999999999999999999999999999999987764
Q ss_pred C
Q psy15852 503 V 503 (661)
Q Consensus 503 ~ 503 (661)
.
T Consensus 182 ~ 182 (311)
T KOG4205|consen 182 T 182 (311)
T ss_pred c
Confidence 4
No 42
>KOG1456|consensus
Probab=99.80 E-value=1.8e-16 Score=156.92 Aligned_cols=398 Identities=13% Similarity=0.076 Sum_probs=238.5
Q ss_pred cEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 101 KMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
-++.+.++. .++|.+|.+.++.||+|.-|..+..+. -|.|+|++.+.|+.++ + ....+...+.|+.-.+.+
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~V-n-faa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCV-N-FAADNQIYIAGQQALFNY 103 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhhe-e-hhccCcccccCchhhccc
Confidence 455555555 999999999999999998888876543 7999999999999961 1 123455556666555544
Q ss_pred hhcc--------C---Ce---eEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 180 AKAK--------S---GK---IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 180 ~~~~--------~---~~---lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
+..+ + ++ +-|-|--+.+|-+-|..++...|+|..|.|++.. ---|.|+|++.+.|++|-+.
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhh
Confidence 4211 1 22 2344656679999999999999999999998642 23499999999999999998
Q ss_pred CC---CccCCeEEEEEeccCCCCCCC--CCCCCC------------CCC--CCCCCCCCCCCCCCCCC----CCCCC-CC
Q psy15852 246 PK---QKINDKEVDVKKATPKPEPFG--VRGGRG------------GRG--GRGGRGGRMAGGYGGYG----GYGGG-YG 301 (661)
Q Consensus 246 ~~---~~~~g~~i~V~~a~~k~~~~~--~~~~~~------------~~g--~~~g~~~~~~~~~g~~~----g~~~~-~~ 301 (661)
++ .+-+-..|+|++|++..-.-. ....+. +++ -|.+...-.+..+..++ +|++| ++
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~ 258 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRH 258 (494)
T ss_pred cccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccC
Confidence 84 344558899999987543100 000010 111 01111111111111122 22222 33
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccc
Q psy15852 302 GILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSY 381 (661)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (661)
+.++.++..|....+..+ ++. +| .....+..++.-| +
T Consensus 259 ~p~~~~P~r~~~~~~~~~--------g~a----~p--~g~~~g~VmMVyG-L---------------------------- 295 (494)
T KOG1456|consen 259 GPPHPPPSRYRDGYRDGR--------GYA----SP--GGGAPGCVMMVYG-L---------------------------- 295 (494)
T ss_pred CCCCCCCCCCccccccCC--------CCC----CC--CCCCCCcEEEEEe-c----------------------------
Confidence 334444444422221111 000 00 1111122222222 2
Q ss_pred cccccccccccccCCCCC-cCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCccc
Q psy15852 382 REWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRK 460 (661)
Q Consensus 382 ~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~ 460 (661)
.-. +..+.|..+|=.| |+|+.|+..+. ..
T Consensus 296 ---------------dh~k~N~drlFNl~ClY------------------------------GNV~rvkFmkT-----k~ 325 (494)
T KOG1456|consen 296 ---------------DHGKMNCDRLFNLFCLY------------------------------GNVERVKFMKT-----KP 325 (494)
T ss_pred ---------------cccccchhhhhhhhhhc------------------------------CceeeEEEeec-----cc
Confidence 222 4555666666666 78999997763 33
Q ss_pred ceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 461 NFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDY 539 (661)
Q Consensus 461 g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~ 539 (661)
|.|.|+..+..+.++|+ .+++..+-|.+|.|..++..-......-.. -
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflL-------------------------------p 374 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLL-------------------------------P 374 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceec-------------------------------C
Confidence 89999999999999999 566677889999887766443221100000 0
Q ss_pred ccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCC
Q psy15852 540 LQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGE 619 (661)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~ 619 (661)
.+.+.+.+++.|... .+..+..........+.+.|...|.|..+||+.|.++|..-+.
T Consensus 375 DgSpSfKdys~SkNn----------------------RFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 375 DGSPSFKDYSGSKNN----------------------RFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred CCCcchhhccccccc----------------------ccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 011112222222111 0000000011111234678999999999999999999987764
Q ss_pred e-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 620 I-ENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 620 I-~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
. ++|+|..-+. -||. -|.++|++.++|..|+...+|+=
T Consensus 433 ~~~svkvFp~ks-erSs-sGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 433 PPTSVKVFPLKS-ERSS-SGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred CcceEEeecccc-cccc-cceeeeehHHHHHHHHHHhcccc
Confidence 3 7888887663 4444 68999999999999999988863
No 43
>KOG4212|consensus
Probab=99.78 E-value=3.6e-17 Score=164.70 Aligned_cols=155 Identities=25% Similarity=0.428 Sum_probs=131.2
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHh-hcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHF-SKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F-~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
..+.+|+.|+| ++.+.+|+++| ++.|+|+-|.|..|.. |++||||.|+|+++|.+++| +..+|.+.+.|++|.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa----~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKA----LEKLNKYEVNGRELV 117 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHH----HHHhhhccccCceEE
Confidence 34545666665 99999999999 5789999999999865 99999999999999999999 999999999999998
Q ss_pred hhhhhccC------------------------------------------------------------------------
Q psy15852 177 AKKAKAKS------------------------------------------------------------------------ 184 (661)
Q Consensus 177 v~~~~~~~------------------------------------------------------------------------ 184 (661)
|+......
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 86543211
Q ss_pred ------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 185 ------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 185 ------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
.++||.||.+.+....|++.|.--|.|+.|.+-.|+. |.++||+.++|..+-.|..||..+
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhh
Confidence 5799999999999999999999999999999999887 799999999999999999999887
Q ss_pred C-CccCCeEEEEEe
Q psy15852 247 K-QKINDKEVDVKK 259 (661)
Q Consensus 247 ~-~~~~g~~i~V~~ 259 (661)
+ .-+..++..++.
T Consensus 277 ~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRL 290 (608)
T ss_pred ccCCCccccceeec
Confidence 4 344445544443
No 44
>KOG0146|consensus
Probab=99.78 E-value=4.7e-19 Score=167.70 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=141.8
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee-ecc--ee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV-INN--KK 174 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~-i~g--~~ 174 (661)
..+++|++.+...-.|+|++.+|..||+|.+|.+.+..+ |.+||||||+|.+.-+|..| |..+++.. +-| ..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaA----I~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAA----INALHGSQTMPGASSS 92 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHH----HHHhcccccCCCCccc
Confidence 346777777777999999999999999999999999876 99999999999999999999 88887753 222 23
Q ss_pred ehhhhhhccC----------------------------------------------------------------------
Q psy15852 175 IEAKKAKAKS---------------------------------------------------------------------- 184 (661)
Q Consensus 175 i~v~~~~~~~---------------------------------------------------------------------- 184 (661)
+.|++++...
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 3333332211
Q ss_pred --------------------------------------------------------------------------------
Q psy15852 185 -------------------------------------------------------------------------------- 184 (661)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (661)
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence
Q ss_pred ---------------------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEE
Q psy15852 185 ---------------------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFI 231 (661)
Q Consensus 185 ---------------------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 231 (661)
|+|||-.||.+..+.+|-+.|-+||.|.+.++..|+.|..+|.|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCCC
Q psy15852 232 TFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEP 266 (661)
Q Consensus 232 ~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~~ 266 (661)
.|+++.+|+.||..+ +..|+-++|+|....+|...
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 999999999999998 57899999999998887753
No 45
>KOG0147|consensus
Probab=99.77 E-value=2.4e-18 Score=179.23 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=142.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
+++|+--|+...+.-+|.++|+.+|+|.+|.++.|+.++.++|.|||+|.+.++...||...|+-+.|.+|.|.......
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaek 259 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEK 259 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHH
Confidence 68888888988999999999999999999999999999999999999999999999999888999999999998755432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCc
Q psy15852 265 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTG 344 (661)
Q Consensus 265 ~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (661)
...... .+. .
T Consensus 260 nr~a~~---------------------------------------------------------s~a-------~------ 269 (549)
T KOG0147|consen 260 NRAANA---------------------------------------------------------SPA-------L------ 269 (549)
T ss_pred HHHHhc---------------------------------------------------------ccc-------c------
Confidence 110000 000 0
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcccc
Q psy15852 345 VIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHM 424 (661)
Q Consensus 345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~ 424 (661)
+.+.+. |... .+++.++...++++.++.+|++|
T Consensus 270 --------------------------~~k~~~--------~p~~-rl~vgnLHfNite~~lr~ifepf------------ 302 (549)
T KOG0147|consen 270 --------------------------QGKGFT--------GPMR-RLYVGNLHFNITEDMLRGIFEPF------------ 302 (549)
T ss_pred --------------------------cccccc--------cchh-hhhhcccccCchHHHHhhhccCc------------
Confidence 000000 0000 14556666779999999999999
Q ss_pred hhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCC
Q psy15852 425 VLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKP 498 (661)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~ 498 (661)
|.|+.|.+++|..+|+++|||||+|.+.++|.+|+ .+++..|.|+.|.|...+.+.
T Consensus 303 ------------------g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 303 ------------------GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred ------------------ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 78999999999999999999999999999999997 556689999999987765443
No 46
>KOG0124|consensus
Probab=99.75 E-value=4.6e-18 Score=167.34 Aligned_cols=177 Identities=19% Similarity=0.392 Sum_probs=148.8
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
-|+|||+.|.+.+.|+.|+..|.+||+|++|.+..|+.|++++|||||+|+-+|.|+-|++.+ +..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999998 5789999999963221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
-+. ..|.
T Consensus 193 mpQ--------------------------------------------------------------------AQpi----- 199 (544)
T KOG0124|consen 193 MPQ--------------------------------------------------------------------AQPI----- 199 (544)
T ss_pred Ccc--------------------------------------------------------------------cchH-----
Confidence 110 0000
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTE 422 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~ 422 (661)
...-+++.|.|+ .+++....|++++++|+..|+.|
T Consensus 200 ----------------------ID~vqeeAk~fn-------------RiYVaSvHpDLSe~DiKSVFEAF---------- 234 (544)
T KOG0124|consen 200 ----------------------IDMVQEEAKKFN-------------RIYVASVHPDLSETDIKSVFEAF---------- 234 (544)
T ss_pred ----------------------HHHHHHHHHhhh-------------eEEeeecCCCccHHHHHHHHHhh----------
Confidence 011224444443 46777888999999999999998
Q ss_pred cchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCC-CcCCCcEEEEecCCCCC
Q psy15852 423 HMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKP 498 (661)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~-~~l~g~~i~v~~a~~~~ 498 (661)
|+|..|.+.++...+..+||||++|.+..+-..|+..++ ..|.|..|+|.++...+
T Consensus 235 --------------------G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 235 --------------------GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred --------------------cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 789999999999999999999999999999999996666 88999999998876554
No 47
>KOG0131|consensus
Probab=99.74 E-value=8.2e-18 Score=151.37 Aligned_cols=167 Identities=20% Similarity=0.320 Sum_probs=141.6
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~ 261 (661)
...+|||+||+..++++.|.++|-+.|+|.++++++|+.++..+|||||+|.++++|+-|++-++ ..+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999986 68999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy15852 262 PKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVD 341 (661)
Q Consensus 262 ~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (661)
......
T Consensus 88 ~~~~nl-------------------------------------------------------------------------- 93 (203)
T KOG0131|consen 88 AHQKNL-------------------------------------------------------------------------- 93 (203)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 322110
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCc
Q psy15852 342 VTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTT 421 (661)
Q Consensus 342 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~ 421 (661)
.+.-++++.++.|.+++.-|...|+.|+
T Consensus 94 --------------------------------------------~vganlfvgNLd~~vDe~~L~dtFsafG-------- 121 (203)
T KOG0131|consen 94 --------------------------------------------DVGANLFVGNLDPEVDEKLLYDTFSAFG-------- 121 (203)
T ss_pred --------------------------------------------cccccccccccCcchhHHHHHHHHHhcc--------
Confidence 1123466777778888888888888874
Q ss_pred ccchhhcccccccchhhccCCceeEEe-eecccccCCcccceEEEEeCChHHHHHHHhCC-CCcCCCcEEEEecCCCC
Q psy15852 422 EHMVLVTGTDMMHMEVTEAVPMEIIET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 497 (661)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~G~i~~~-~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~-~~~l~g~~i~v~~a~~~ 497 (661)
.+... ++.+|..|+.++|||||.|.+.|.+.+|+..+ ++.+.+++|.|..+..+
T Consensus 122 ----------------------~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 122 ----------------------VLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred ----------------------ccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 45544 57888999999999999999999999999554 47789999999998866
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=5.1e-17 Score=148.73 Aligned_cols=86 Identities=24% Similarity=0.566 Sum_probs=79.4
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
....++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.+ +..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344689999999999999999999999999999999999999999999999999999999999876 6899999999999
Q ss_pred ccCCCCC
Q psy15852 260 ATPKPEP 266 (661)
Q Consensus 260 a~~k~~~ 266 (661)
+.++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876543
No 49
>KOG0109|consensus
Probab=99.70 E-value=7.6e-17 Score=155.00 Aligned_cols=155 Identities=19% Similarity=0.428 Sum_probs=133.8
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
+|||+|||..+++.+|+.+|++||+|.+|.|+ |.||||..++...|..||..+ +.+|+|..|.|+.++.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 69999999999999999999999999999997 679999999999999999987 568999999999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCc
Q psy15852 265 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTG 344 (661)
Q Consensus 265 ~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (661)
..
T Consensus 76 k~------------------------------------------------------------------------------ 77 (346)
T KOG0109|consen 76 KA------------------------------------------------------------------------------ 77 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcccc
Q psy15852 345 VIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHM 424 (661)
Q Consensus 345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~ 424 (661)
...+.|.|..|..+..||++.|..++
T Consensus 78 -------------------------------------------stkl~vgNis~tctn~ElRa~fe~yg----------- 103 (346)
T KOG0109|consen 78 -------------------------------------------STKLHVGNISPTCTNQELRAKFEKYG----------- 103 (346)
T ss_pred -------------------------------------------ccccccCCCCccccCHHHhhhhcccC-----------
Confidence 11244556667889999999999995
Q ss_pred hhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCCCCCCC
Q psy15852 425 VLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKPEPFGV 503 (661)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~~~~~~ 503 (661)
.|++|.|+. +|+||+|+-.++|..|+ .+++..+.|+++.|..++++-....+
T Consensus 104 -------------------pviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 104 -------------------PVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred -------------------Cceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCCC
Confidence 499999887 79999999999999999 67778999999999999988776665
Q ss_pred CCCC
Q psy15852 504 RGGR 507 (661)
Q Consensus 504 ~~~~ 507 (661)
.+..
T Consensus 157 mgDq 160 (346)
T KOG0109|consen 157 MGDQ 160 (346)
T ss_pred CCCH
Confidence 5553
No 50
>KOG1190|consensus
Probab=99.65 E-value=4.8e-14 Score=141.65 Aligned_cols=224 Identities=14% Similarity=0.153 Sum_probs=153.0
Q ss_pred CCCCCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCceeeecccc------------ccccccc-----
Q psy15852 26 VKDDDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKPLTVSCSHH------------YYLFDQI----- 87 (661)
Q Consensus 26 ~~~~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~~~~~~~~~------------~~l~~~~----- 87 (661)
....-|-|.+++||++++| ++|.+++ .|| .+..+..++-.+-.-+..+..+. .-|.++.
T Consensus 24 ~~~pSkV~HlRnlp~e~tE-~elI~Lg~pFG--~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTE-EELISLGLPFG--KVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred ccCCcceeEeccCCccccH-HHHHHhccccc--ceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 3345678999999999999 9999999 999 88888777764322211111100 0000000
Q ss_pred --------------ccceee---------------------eeecCCC---cEEEEcCCCcCCHHHHHHHhhcCCCeeEE
Q psy15852 88 --------------LRTHFF---------------------YIMEAKN---KMVSHPGIVHKITEELKEHFSKYGEIENV 129 (661)
Q Consensus 88 --------------~r~~~~---------------------~~~~~~~---~~~~~~~~~~~te~~L~~~F~~~G~I~~v 129 (661)
.|.... ...+..+ ++|+.....-++-+-|..+|++||.|..|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 000000 0000011 23334444589999999999999999877
Q ss_pred EEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee--ehhhhh----------hcc--------------
Q psy15852 130 TLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK--IEAKKA----------KAK-------------- 183 (661)
Q Consensus 130 ~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~--i~v~~~----------~~~-------------- 183 (661)
.-... + ... -|.|+|.+.+.|..| ...++|..|.+-. +++.++ ..+
T Consensus 181 iTF~K-n-n~F--QALvQy~d~~sAq~A----K~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 181 ITFTK-N-NGF--QALVQYTDAVSAQAA----KLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEec-c-cch--hhhhhccchhhHHHH----HHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 55542 2 112 389999999999999 8888887664321 111111 100
Q ss_pred --------------------------------------------CCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEecc
Q psy15852 184 --------------------------------------------SGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 184 --------------------------------------------~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
...|.|.||-. .+|.+.|..+|+-||.|..|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 14578888865 499999999999999999999998
Q ss_pred CCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCC
Q psy15852 219 DKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~ 265 (661)
++ +--|.|+|.+...|+-|+..+ ++.+.|++|+|.+++-..-
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 65 345999999999999999998 7899999999999876543
No 51
>KOG0105|consensus
Probab=99.62 E-value=2.2e-14 Score=129.18 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=68.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.+++|||+|||.++.+.+|+++|.+||.|..|.+... .....||||+|+++-+|+.||... +..++|..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4589999999999999999999999999999998543 234789999999999999999886 678999999999975
Q ss_pred C
Q psy15852 262 P 262 (661)
Q Consensus 262 ~ 262 (661)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 3
No 52
>KOG0105|consensus
Probab=99.58 E-value=3.9e-14 Score=127.65 Aligned_cols=148 Identities=17% Similarity=0.333 Sum_probs=123.1
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..+.||++|+| ++-+.+|+++|.+||.|.+|.|..-+ ..-.||||+|+++.+|+.| |...++..+.|..|.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDA----iygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDA----IYGRDGYDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhh----hhcccccccCcceEEE
Confidence 34567777777 99999999999999999999987532 3457999999999999999 9999999999999999
Q ss_pred hhhhcc-------------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcC
Q psy15852 178 KKAKAK-------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226 (661)
Q Consensus 178 ~~~~~~-------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~ 226 (661)
..+..- ..+|.|++||++-+++||+++..+-|.|....+.+|
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------- 150 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------
Confidence 876422 157999999999999999999999999999988765
Q ss_pred cEEEEEeCCHHHHHHHHHhCC-C--ccCCeEEEEEec
Q psy15852 227 NFCFITFEHESVVIDLLKNPK-Q--KINDKEVDVKKA 260 (661)
Q Consensus 227 g~afV~f~~~~~A~~Al~~~~-~--~~~g~~i~V~~a 260 (661)
|++.|+|...|+..-|+..+. . .-.|....+..-
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 478999999999999998872 2 225555444443
No 53
>KOG1365|consensus
Probab=99.50 E-value=2e-14 Score=142.94 Aligned_cols=281 Identities=15% Similarity=0.103 Sum_probs=180.7
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
.-+..++||+..++.+|..+|.-.-...--..+.....|+..|.+.|.|.+.|.-+.|++...+.+.++.|.|-.+....
T Consensus 61 vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 61 VVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred eEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchh
Confidence 34667899999999999999975322111111222223777899999999999999999999888999999998876543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCc
Q psy15852 265 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTG 344 (661)
Q Consensus 265 ~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (661)
.-. +.++. .+..+.
T Consensus 141 f~~--------------------------------iagg~--------------------s~e~~~-------------- 154 (508)
T KOG1365|consen 141 FLK--------------------------------IAGGT--------------------SNEAAP-------------- 154 (508)
T ss_pred heE--------------------------------ecCCc--------------------cccCCC--------------
Confidence 210 00000 000000
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcccccCCccc
Q psy15852 345 VIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTTEH 423 (661)
Q Consensus 345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~~~ 423 (661)
|..+ -.-+++.-..+|. .++.++.++|.+.++..
T Consensus 155 ------------------------------flsk--------~~qvivRmRGLPfdat~~dVv~FF~~~cpv~------- 189 (508)
T KOG1365|consen 155 ------------------------------FLSK--------ENQVIVRMRGLPFDATALDVVEFFGPPCPVT------- 189 (508)
T ss_pred ------------------------------CCCc--------ccceEEEecCCCCCcchHHHHHhcCCCCccc-------
Confidence 0000 0012222334565 88888888887554310
Q ss_pred chhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCCC--
Q psy15852 424 MVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF-- 501 (661)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~-- 501 (661)
|-.+.+-. ..+.+|+..|-|||.|..+++|+.|+..+.+.|+-|.|++-+++..+..+
T Consensus 190 -------------------~g~egvLF-V~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvl 249 (508)
T KOG1365|consen 190 -------------------GGTEGVLF-VTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVL 249 (508)
T ss_pred -------------------CCccceEE-EECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Confidence 11222222 22456788899999999999999999999999999999987776554221
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCcccccc
Q psy15852 502 --GVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFD 579 (661)
Q Consensus 502 --~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 579 (661)
..+.+-.+.- + . ..-|. .+..
T Consensus 250 nr~~s~pLi~~~-----~----s----------------------------------------p~~p~------~p~~-- 272 (508)
T KOG1365|consen 250 NREVSEPLIPGL-----T----S----------------------------------------PLLPG------GPAR-- 272 (508)
T ss_pred HhhccccccCCC-----C----C----------------------------------------CCCCC------Cccc--
Confidence 0000000000 0 0 00000 0000
Q ss_pred CCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 580 QNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGE-IEN--VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~-I~~--v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
.+.....+.+|-.|+||++++.+||-++|..|-. |.. |+++.+.. |++.|.|||+|.+.|+|.+|+.+-|
T Consensus 273 ------~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 273 ------LVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred ------cCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHH
Confidence 0111223678999999999999999999999864 444 89999887 9999999999999999999999876
Q ss_pred cccC
Q psy15852 657 YFYS 660 (661)
Q Consensus 657 ~~~~ 660 (661)
--||
T Consensus 346 k~~m 349 (508)
T KOG1365|consen 346 KKLM 349 (508)
T ss_pred Hhhc
Confidence 5554
No 54
>KOG0149|consensus
Probab=99.50 E-value=3e-14 Score=134.11 Aligned_cols=64 Identities=30% Similarity=0.517 Sum_probs=61.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
-+||||++|||+++.++|+++|.+||+|+++.|+.|+.||||||||||+|.+.+.|++|++.-+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 4799999999999999999999999999999999999999999999999999999999998643
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.49 E-value=9.6e-14 Score=127.12 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..+++|.+|+++++|++|+++|++||+|.+|+|+.++.|+++||||||+|.++++|++| +..+++..|.|++|.|.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~A----l~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA----ISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHH----HHHcCCCEECCEEEEEE
Confidence 34555555555999999999999999999999999999999999999999999999999 88899999999999998
Q ss_pred hhhc
Q psy15852 179 KAKA 182 (661)
Q Consensus 179 ~~~~ 182 (661)
++.+
T Consensus 110 ~a~~ 113 (144)
T PLN03134 110 PAND 113 (144)
T ss_pred eCCc
Confidence 8754
No 56
>KOG4206|consensus
Probab=99.45 E-value=1.1e-12 Score=123.41 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=124.5
Q ss_pred EEEEcCCC-cCCHHHHHH----HhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 102 MVSHPGIV-HKITEELKE----HFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 102 ~~~~~~~~-~~te~~L~~----~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++|+.|+. .+..++|+. +|++||.|.+|...+ |.+.||-|||.|.+.+.|..| ...++|..+.|+++.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A----~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAA----LRALQGFPFYGKPMR 83 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHH----HHHhcCCcccCchhh
Confidence 77888887 788888777 999999999998876 478999999999999999999 889999999999999
Q ss_pred hhhhhccC-------------------------------------------------------CeeEecCCCccCCHHHH
Q psy15852 177 AKKAKAKS-------------------------------------------------------GKIFVGGLSPEMKDEEI 201 (661)
Q Consensus 177 v~~~~~~~-------------------------------------------------------~~lfV~nLp~~~te~~L 201 (661)
+.++..++ ..+|+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 88875332 35899999999999999
Q ss_pred HHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC-CeEEEEEecc
Q psy15852 202 KAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN-DKEVDVKKAT 261 (661)
Q Consensus 202 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~-g~~i~V~~a~ 261 (661)
..+|.+|.-...|+++... ++.|||+|.+...|..|...+ +..+- ...+.|.++.
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999989999887542 789999999998888888876 33332 6677776653
No 57
>KOG4307|consensus
Probab=99.42 E-value=4.7e-12 Score=134.80 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=116.6
Q ss_pred EEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 102 MVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 102 ~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
+-|.+-..+.++.+++++|... .|-.+.|..+...+...|-++|+|....++.+| ...|....-.|.+.+..+-
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A-----~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNA-----FTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHH-----HhcCchhhhhcceeecCCC
Confidence 3444555689999999998653 366777777665444588999999999999996 4455555555666554321
Q ss_pred cc--------------------------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeEE-EEe
Q psy15852 182 AK--------------------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIE-TEM 216 (661)
Q Consensus 182 ~~--------------------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i 216 (661)
.. ..+|||..||..+++.++-++|..--.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 10 058999999999999999999999777776 666
Q ss_pred ccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 217 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
.+-+ +++.++.|||.|..++++.+|+... .+++..+.|+|.....+.
T Consensus 468 t~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 468 TRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred ccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 5544 4778999999999988888887665 577888999998765543
No 58
>KOG0149|consensus
Probab=99.41 E-value=3e-13 Score=127.44 Aligned_cols=79 Identities=32% Similarity=0.536 Sum_probs=75.6
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
-.+|||++|++.+..+.|+++|++||+|.++.|+.|+.+|++|||+||+|.+.++|.+|++..+..|+||+..+..|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999988764
No 59
>KOG1548|consensus
Probab=99.38 E-value=8.6e-12 Score=123.44 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=136.6
Q ss_pred eeeeecCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHH
Q psy15852 92 FFYIMEAKNKMVSHPGIV-HKITEELKEHFSKYGEIEN--------VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162 (661)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~--------v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~ 162 (661)
|....+..++.|||.++| ++|.+++.++|++||.|.+ |+|.++.+ |+.||=|.|.|-..+++..| +
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA----~ 200 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELA----I 200 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHH----H
Confidence 444445567778888888 9999999999999998754 78999876 99999999999999999999 9
Q ss_pred HHhCCeeecceeehhhhhhcc-------------------------------------------CCeeEecCCCc----c
Q psy15852 163 IAEGNHVINNKKIEAKKAKAK-------------------------------------------SGKIFVGGLSP----E 195 (661)
Q Consensus 163 ~~~~~~~i~g~~i~v~~~~~~-------------------------------------------~~~lfV~nLp~----~ 195 (661)
..|++..+.|+.|+|..|+-. .++|.++|+-. .
T Consensus 201 ~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~ 280 (382)
T KOG1548|consen 201 KILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFE 280 (382)
T ss_pred HHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhc
Confidence 999999999999999876311 16799999832 2
Q ss_pred CC-------HHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 196 MK-------DEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 196 ~t-------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
.+ +++|++-+++||.|..|.|.- .++.|.+-|.|.+.++|..||+.| +..+.||.|.......+.
T Consensus 281 ~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 281 KNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 22 357788899999999998753 456899999999999999999998 789999999988766544
No 60
>KOG0122|consensus
Probab=99.38 E-value=7.6e-13 Score=125.02 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|-|.||+-+++|+||++||.+||.|.+|.|.+|+.||.+||||||+|.+.++|.+||+.++.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 3578999999999999999999999999999999999999999999999999999999999987654
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.38 E-value=9.8e-13 Score=105.09 Aligned_cols=62 Identities=32% Similarity=0.494 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 596 MVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 596 l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
|||+|||+++|+++|+++|++||.|..+++..+ .+++++|+|||+|.+.++|++|++.++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 799999999999999999999999999999998 56999999999999999999999976654
No 62
>KOG0120|consensus
Probab=99.37 E-value=4.4e-12 Score=134.89 Aligned_cols=152 Identities=22% Similarity=0.385 Sum_probs=125.8
Q ss_pred cEEEEcCCC-cCCHHHHHHHhhcC-----------CC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCC
Q psy15852 101 KMVSHPGIV-HKITEELKEHFSKY-----------GE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN 167 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~~~F~~~-----------G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~ 167 (661)
.-+++.+++ .++++.+-.+|..- |+ |..|.+-..++ |||++|.+.++|.. ++.+++
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~-----~~~~~~ 244 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATE-----AMALDG 244 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhh-----hhcccc
Confidence 345666665 89999999999764 54 77777766544 99999999999999 577778
Q ss_pred eeecceeehhhhhhc----------------------------cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccC
Q psy15852 168 HVINNKKIEAKKAKA----------------------------KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219 (661)
Q Consensus 168 ~~i~g~~i~v~~~~~----------------------------~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 219 (661)
..+.|+++.+..... ...++||++||..+++.+++++...||.+....++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 777777765533210 0167999999999999999999999999999999999
Q ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 220 KSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 220 ~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
..+|.++||||.+|.+......|+..+ +..+.++.|.|..|-.-
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 999999999999999999999999998 56788899999888753
No 63
>KOG0121|consensus
Probab=99.36 E-value=2.2e-12 Score=109.64 Aligned_cols=94 Identities=23% Similarity=0.342 Sum_probs=82.7
Q ss_pred cceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCc
Q psy15852 171 NNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQK 249 (661)
Q Consensus 171 ~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~ 249 (661)
.|.......+..++++|||+||++.++|++|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|..||+-. +..
T Consensus 23 ~gt~~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 23 RGTDEEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred cCchHHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 3344444556677899999999999999999999999999999999999998999999999999999999999997 688
Q ss_pred cCCeEEEEEeccCCC
Q psy15852 250 INDKEVDVKKATPKP 264 (661)
Q Consensus 250 ~~g~~i~V~~a~~k~ 264 (661)
++.++|.|.|...-.
T Consensus 103 Lddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 103 LDDRPIRIDWDAGFV 117 (153)
T ss_pred ccccceeeeccccch
Confidence 999999999876543
No 64
>KOG0120|consensus
Probab=99.33 E-value=1.6e-11 Score=130.75 Aligned_cols=160 Identities=19% Similarity=0.341 Sum_probs=127.3
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++++.+++-..++.++.++...||++....++.+..+|.++||||.+|.++--...| +..+||..+.++++.|.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A----~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQA----IAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhh----hcccchhhhcCceeEee
Confidence 34455555555999999999999999999999999999999999999999999999999 99999999999999888
Q ss_pred hhhccCCe-----------------------------eEecCC--CccC-CH-------HHHHHHHhcCCCeEEEEeccC
Q psy15852 179 KAKAKSGK-----------------------------IFVGGL--SPEM-KD-------EEIKAHFAQFGNIIETEMPYD 219 (661)
Q Consensus 179 ~~~~~~~~-----------------------------lfV~nL--p~~~-te-------~~L~~~F~~~G~i~~v~i~~~ 219 (661)
.+...... |.+.|+ |.++ ++ |+++.-+++||.|..|.+++.
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 77543211 111111 1111 11 466777899999999999987
Q ss_pred -CC--CCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 220 -KS--KSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 220 -~~--~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.. -....|-.||+|.+.+++++|++++ |.++.+|.|...+...
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 21 1344567899999999999999999 7899999999888654
No 65
>KOG0122|consensus
Probab=99.33 E-value=3.9e-12 Score=120.28 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=76.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|.|.||+.++++++|+++|.+||.|..|.|.+|+.||.++|||||.|.+.++|++||+.+ ++-++.-.|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999998 577888899999998
Q ss_pred CC
Q psy15852 262 PK 263 (661)
Q Consensus 262 ~k 263 (661)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=5.7e-12 Score=100.83 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=56.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 596 MVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 596 l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
|||+|||+.++++||+++|+.||.|..|++..++. |+++|+|||+|.++++|.+|+...+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC
Confidence 79999999999999999999999999999999988 9999999999999999999999877
No 67
>KOG0107|consensus
Probab=99.31 E-value=1.2e-11 Score=111.33 Aligned_cols=77 Identities=21% Similarity=0.432 Sum_probs=70.7
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+||+..+++.||+..|..||+|.+|+|.+. +.|||||+|+++.+|..|+..| +..|+|..|.|+...-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 578999999999999999999999999999999865 4899999999999999999998 6899999999999876
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
+..
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 554
No 68
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=1.3e-11 Score=98.49 Aligned_cols=69 Identities=32% Similarity=0.547 Sum_probs=62.1
Q ss_pred EEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 103 VSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 103 ~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++.++++++++++|+++|++||+|..+.++.+ .+++++|||||+|.+.++|++| +..+++..+.|++|+
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a----~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKA----LEELNGKKINGRKIR 70 (70)
T ss_dssp EEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHH----HHHHTTEEETTEEEE
T ss_pred EEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHH----HHHcCCCEECccCcC
Confidence 44445559999999999999999999999997 5689999999999999999999 888999999999874
No 69
>KOG0106|consensus
Probab=99.29 E-value=3.3e-12 Score=121.78 Aligned_cols=137 Identities=22% Similarity=0.421 Sum_probs=118.1
Q ss_pred EEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 102 MVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 102 ~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
+++..+++.+.+.+|..+|..||.|.+|.+.. ||+||+|.+..+|..| +..+++..|.+..+.+.++.
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Da----v~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDA----VHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcc----cchhcCceecceeeeeeccc
Confidence 44455555999999999999999999998865 5999999999999999 99999999999887777765
Q ss_pred cc-------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCH
Q psy15852 182 AK-------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236 (661)
Q Consensus 182 ~~-------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 236 (661)
.. .+.|+|.+++..+.+.+|.+.|+++|.+....+ ..+++||+|.+.
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQ 143 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhh
Confidence 21 167999999999999999999999999855544 367899999999
Q ss_pred HHHHHHHHhC-CCccCCeEEEEE
Q psy15852 237 SVVIDLLKNP-KQKINDKEVDVK 258 (661)
Q Consensus 237 ~~A~~Al~~~-~~~~~g~~i~V~ 258 (661)
++|.+|+..+ +..+.++.|.+.
T Consensus 144 ~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhhhhcchhccchhhcCceeeec
Confidence 9999999998 688999999993
No 70
>KOG4207|consensus
Probab=99.27 E-value=1.1e-11 Score=113.99 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=74.9
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
..|.|-||-+-++.++|+.+|++||.|-+|.|++|+-|+.++|||||.|....+|+.|+++| +..|+|+.|.|++|.--
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 57999999999999999999999999999999999999999999999999999999999998 68999999999988643
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.27 E-value=2.1e-11 Score=119.45 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||+.+++++|+++|+.||+|.+|.|+++.. .+|||||+|.++++|..||..++..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 36899999999999999999999999999999998854 479999999999999999987789999999999998754
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 72
>KOG4206|consensus
Probab=99.26 E-value=1.8e-10 Score=108.70 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=70.7
Q ss_pred CeeEecCCCccCCHHHHHH----HHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 185 GKIFVGGLSPEMKDEEIKA----HFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
.+|||.||...+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|-.|+..+ |.-+.|+.++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999888 999999999998865 4677999999999999999999998 7899999999999
Q ss_pred ccCCCC
Q psy15852 260 ATPKPE 265 (661)
Q Consensus 260 a~~k~~ 265 (661)
|..+..
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 987653
No 73
>KOG0125|consensus
Probab=99.24 E-value=1.2e-11 Score=121.60 Aligned_cols=98 Identities=16% Similarity=0.405 Sum_probs=82.7
Q ss_pred HhCCeeecceeehhhhhh-----ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHH
Q psy15852 164 AEGNHVINNKKIEAKKAK-----AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESV 238 (661)
Q Consensus 164 ~~~~~~i~g~~i~v~~~~-----~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 238 (661)
..++....|..+.+.... ...++|+|+|||+...|-||+.+|.+||+|.+|.|+.+. .-+|||+||+|++.++
T Consensus 71 ~~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 71 TSNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPAD 148 (376)
T ss_pred ccCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhh
Confidence 344555566666665543 234899999999999999999999999999999999765 4479999999999999
Q ss_pred HHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 239 VIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 239 A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
|++|-+++ +..+.||+|+|..|..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999998 68999999999998875
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=7.5e-11 Score=94.31 Aligned_cols=69 Identities=29% Similarity=0.513 Sum_probs=60.6
Q ss_pred EEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 103 VSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 103 ~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++.++++++++++|+++|+.||.|..|++..+++ +.++|+|||+|.++++|.+| +...++..+.|+.|+
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~a----l~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRA----LELLNGKEIDGRKLR 70 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHH----HHHHTTEEETTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHH----HHHCCCcEECCEEcC
Confidence 4555556999999999999999999999999987 99999999999999999998 888888999999874
No 75
>KOG0114|consensus
Probab=99.20 E-value=3.4e-11 Score=98.60 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcccC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS 660 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~~ 660 (661)
.+-|||+|||+++|.+|+.++|.+||.|.-|+|=..+ ..+|.|||.|++..+|.+|++++..|+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc
Confidence 4679999999999999999999999999999998765 4689999999999999999999888764
No 76
>KOG0113|consensus
Probab=99.20 E-value=1.6e-10 Score=112.46 Aligned_cols=80 Identities=23% Similarity=0.440 Sum_probs=75.0
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||.-|+++++|..|+..|+.||+|+.|.|+++..||+++|||||+|+++-+..+|.+.- +.+|+|+.|.|.+-..+
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999876 78999999999876554
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 182 T 182 (335)
T KOG0113|consen 182 T 182 (335)
T ss_pred c
Confidence 4
No 77
>KOG0121|consensus
Probab=99.20 E-value=2.9e-11 Score=102.90 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=70.5
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+.+++||+|+. .++||+|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|+.| +.-+++..++.++|.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~A----lryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDA----LRYISGTRLDDRPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHH----HHHhccCcccccceee
Confidence 34566666665 999999999999999999999999999999999999999999999999 8999999999999988
Q ss_pred hhh
Q psy15852 178 KKA 180 (661)
Q Consensus 178 ~~~ 180 (661)
.|-
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 764
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=118.20 Aligned_cols=131 Identities=31% Similarity=0.511 Sum_probs=107.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.+|++++++++|+++|.+||+|..|.+..++.+++++|||||+|.++++|..| +..+++..+.|++|.|.+
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a----~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKA----IEELNGKELEGRPLRVQK 191 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHH----HHHcCCCeECCceeEeec
Confidence 4555555555999999999999999999999999988899999999999999999999 999999999999999988
Q ss_pred hhc----c-------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEE
Q psy15852 180 AKA----K-------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCF 230 (661)
Q Consensus 180 ~~~----~-------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~af 230 (661)
... . ...+++.+++..++..++...|..+|.+..+.+.............+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 431 0 15789999999999999999999999997777766544333333333
Q ss_pred EEeC
Q psy15852 231 ITFE 234 (661)
Q Consensus 231 V~f~ 234 (661)
+.+.
T Consensus 272 ~~~~ 275 (306)
T COG0724 272 VGNE 275 (306)
T ss_pred cchh
Confidence 3333
No 79
>KOG0125|consensus
Probab=99.16 E-value=4e-11 Score=117.84 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
...+-++|.|+| ..-|.||+.+|.+||+|.+|.|+.+. .-||||+||+|++++||++| -.++++..|.||+|+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRA----Ra~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRA----RAELHGTVVEGRKIE 167 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHH----HHHhhcceeeceEEE
Confidence 345677888887 99999999999999999999999874 46999999999999999999 899999999999999
Q ss_pred hhhhhcc
Q psy15852 177 AKKAKAK 183 (661)
Q Consensus 177 v~~~~~~ 183 (661)
|..+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9988654
No 80
>KOG0113|consensus
Probab=99.16 E-value=6.9e-11 Score=114.87 Aligned_cols=80 Identities=23% Similarity=0.403 Sum_probs=74.2
Q ss_pred cCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 97 EAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 97 ~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++-.|+||..|..+++|..|+..|+.||+|+.|+|++|+.||+++|||||+|.++.+...| ....++..|+|+.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~A----YK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA----YKDADGIKIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHH----HHhccCceecCcEEE
Confidence 5567889999999999999999999999999999999999999999999999999999999 888899999999887
Q ss_pred hhhh
Q psy15852 177 AKKA 180 (661)
Q Consensus 177 v~~~ 180 (661)
|..-
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 7643
No 81
>KOG0126|consensus
Probab=99.14 E-value=5e-12 Score=114.05 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=74.5
Q ss_pred ceeeeeecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 90 THFFYIMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
.+|...-..+.-+++++++.+.||.||...|++||+|.+|.|++|+.||+|+||||+.|++..+...| +..+||..
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILA----VDN~NGik 101 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILA----VDNLNGIK 101 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEE----EeccCCce
Confidence 34554444444455555555999999999999999999999999999999999999999999999999 99999999
Q ss_pred ecceeehhhhh
Q psy15852 170 INNKKIEAKKA 180 (661)
Q Consensus 170 i~g~~i~v~~~ 180 (661)
|.||.|+|...
T Consensus 102 i~gRtirVDHv 112 (219)
T KOG0126|consen 102 ILGRTIRVDHV 112 (219)
T ss_pred ecceeEEeeec
Confidence 99999998754
No 82
>KOG0126|consensus
Probab=99.14 E-value=7.1e-12 Score=113.07 Aligned_cols=80 Identities=28% Similarity=0.524 Sum_probs=74.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.+..|||+|||+.+||.||..+|++||+|.+|.+++|+.||+++||||++|++.-+..-|+..+ +..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3568999999999999999999999999999999999999999999999999999988888887 689999999998654
Q ss_pred C
Q psy15852 262 P 262 (661)
Q Consensus 262 ~ 262 (661)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.13 E-value=2e-10 Score=110.70 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=70.6
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
.+|||+||++.+|+++|+++|+.||+|.+|+|+++. ..++||||+|.++++|..|+...+..|.+++|.|..+....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcccc
Confidence 589999999999999999999999999999999884 44689999999999999999888999999999999877543
No 84
>KOG0130|consensus
Probab=99.13 E-value=1.3e-10 Score=99.70 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=77.2
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~~k 263 (661)
.-|||.++-...++++|.+.|..||+|+++.+..|+.||..+|||+|+|++.+.|++|+..++ ..|.|+.|.|.|+..+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 569999999999999999999999999999999999999999999999999999999999985 8999999999999876
Q ss_pred CCC
Q psy15852 264 PEP 266 (661)
Q Consensus 264 ~~~ 266 (661)
...
T Consensus 153 gp~ 155 (170)
T KOG0130|consen 153 GPE 155 (170)
T ss_pred CCc
Confidence 543
No 85
>KOG1457|consensus
Probab=99.13 E-value=4.6e-10 Score=104.64 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=109.3
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeec---ce
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSD-PNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN---NK 173 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~-~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~---g~ 173 (661)
.-+++||.+|+-++.-.||..+|..|--.+.+.|... +...-.+-+|||.|.+..+|.+| ...+||..++ +.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aa----mnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAA----MNALNGVRFDPETGS 108 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHH----HHHhcCeeeccccCc
Confidence 3578888888889999999999999976777777653 22223568999999999999999 8999999885 45
Q ss_pred eehhhhhhccC---------------------------------------------------------------------
Q psy15852 174 KIEAKKAKAKS--------------------------------------------------------------------- 184 (661)
Q Consensus 174 ~i~v~~~~~~~--------------------------------------------------------------------- 184 (661)
.+++..++...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 55555443211
Q ss_pred ----------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q psy15852 185 ----------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242 (661)
Q Consensus 185 ----------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 242 (661)
.+|||-||..+++|++|+.+|+.|-....++|.-. .....||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHH
Confidence 47999999999999999999999986655555321 1245699999999988888
Q ss_pred HHhC
Q psy15852 243 LKNP 246 (661)
Q Consensus 243 l~~~ 246 (661)
|..+
T Consensus 265 m~~l 268 (284)
T KOG1457|consen 265 MNHL 268 (284)
T ss_pred HHHh
Confidence 8764
No 86
>KOG0114|consensus
Probab=99.12 E-value=2.6e-10 Score=93.51 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.+-|||+|||+++|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|+..+ +..+.++.+.|-+..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 367999999999999999999999999999999777665 999999999999999999998 6899999999998876
Q ss_pred CC
Q psy15852 263 KP 264 (661)
Q Consensus 263 k~ 264 (661)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 54
No 87
>KOG4207|consensus
Probab=99.12 E-value=8.8e-11 Score=108.19 Aligned_cols=77 Identities=27% Similarity=0.480 Sum_probs=69.8
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
.|.|-+|..-++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|+.| +..+++.+|+|+.|.|+.+
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA----~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDA----LDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHH----HHhhcceeeccceeeehhh
Confidence 344455556999999999999999999999999999999999999999999999999 9999999999999988766
Q ss_pred h
Q psy15852 181 K 181 (661)
Q Consensus 181 ~ 181 (661)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 88
>KOG4307|consensus
Probab=99.12 E-value=6.1e-09 Score=111.49 Aligned_cols=164 Identities=12% Similarity=0.022 Sum_probs=106.3
Q ss_pred eEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGY 524 (661)
Q Consensus 445 i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 524 (661)
|....|..++..+...|-++|.|....++++|+..+...+-.+.+.+.-+.....-.. .+...+-+. +
T Consensus 337 ~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a--------~~~~~~~~~---~- 404 (944)
T KOG4307|consen 337 AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGA--------PPFQAGVPP---P- 404 (944)
T ss_pred ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccC--------ccccccCCC---C-
Confidence 5555566666666667999999999999999998888888888888865543321110 000000000 0
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCC
Q psy15852 525 GGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVD 604 (661)
Q Consensus 525 gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 604 (661)
.+... .+...+.|-+......+ .-..-..+..|||..||+.
T Consensus 405 -------~~~~~----------------------hg~p~~~pr~~~~~gq~----------vp~P~~ag~~lyv~~lP~~ 445 (944)
T KOG4307|consen 405 -------VIQNN----------------------HGRPIAPPRAMVRPGQN----------VPFPGGAGGALYVFQLPVM 445 (944)
T ss_pred -------ccccc----------------------CCCCCCCcccccCCCCC----------CCCCCCccceEEeccCCcc
Confidence 00000 00000001000000000 0001234678999999999
Q ss_pred CCHHHHHHHhhcCCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcccC
Q psy15852 605 KITEELKEHFSKYGEIEN-VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS 660 (661)
Q Consensus 605 ~te~dL~~~F~~~G~I~~-v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~~ 660 (661)
+++.++.++|+.--.|++ |.|-+.+ |++-++.|||.|..++++.+|....|.||+
T Consensus 446 t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 446 TPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred ccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccccccc
Confidence 999999999998878877 5555554 699999999999999999999999999996
No 89
>KOG1457|consensus
Probab=99.11 E-value=1.2e-09 Score=101.86 Aligned_cols=82 Identities=20% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccC-CCCCCcCcEEEEEeCCHHHHHHHHHhCC-Ccc---CCeEEEEE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD-KSKSQRKNFCFITFEHESVVIDLLKNPK-QKI---NDKEVDVK 258 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~---~g~~i~V~ 258 (661)
.++|||.+||.++..-+|..+|..|---+.+.+... +..+..+-+|||.|.+..+|..|+.+++ ..| .+..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 489999999999999999999999876666665443 2224566899999999999999999974 444 45788998
Q ss_pred eccCCCC
Q psy15852 259 KATPKPE 265 (661)
Q Consensus 259 ~a~~k~~ 265 (661)
.|+....
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 8876553
No 90
>KOG1456|consensus
Probab=99.11 E-value=1.5e-08 Score=101.24 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=150.9
Q ss_pred ceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCceeee------------ccccccc------cc-----c
Q psy15852 31 RKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKPLTVS------------CSHHYYL------FD-----Q 86 (661)
Q Consensus 31 r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~~~~~------------~~~~~~l------~~-----~ 86 (661)
.-|.|++|-..++| .||.+.- .+| .+.-+..+.....-.+.+. ......+ ++ .
T Consensus 32 pvvhvr~l~~~v~e-adl~eal~~fG--~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVE-ADLVEALSNFG--PIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred ceEEEeccccccch-hHHHHHHhcCC--ceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 45899999999999 9999999 999 6665555444222122222 2221111 11 0
Q ss_pred cccceeeeeecCCCcEEE--EcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHH
Q psy15852 87 ILRTHFFYIMEAKNKMVS--HPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVI 163 (661)
Q Consensus 87 ~~r~~~~~~~~~~~~~~~--~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~ 163 (661)
..|.- .+...-+++++ +-|+. .+|-+-|..+....|+|.+|.|++. +|- .|.|+|++.+.|++| ..
T Consensus 109 i~R~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrA----k~ 177 (494)
T KOG1456|consen 109 IERPG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRA----KA 177 (494)
T ss_pred hccCC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHH----Hh
Confidence 01111 11112234433 33433 8999999999999999999999874 232 599999999999999 88
Q ss_pred HhCCeeecc--eeehhhhhhccC---------------------------------------------------------
Q psy15852 164 AEGNHVINN--KKIEAKKAKAKS--------------------------------------------------------- 184 (661)
Q Consensus 164 ~~~~~~i~g--~~i~v~~~~~~~--------------------------------------------------------- 184 (661)
.+||..|.. -.++|.++++..
T Consensus 178 alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~ 257 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDR 257 (494)
T ss_pred hcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccccc
Confidence 899877632 344444443321
Q ss_pred ------------------------------CeeEecCCCcc-CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEe
Q psy15852 185 ------------------------------GKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233 (661)
Q Consensus 185 ------------------------------~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f 233 (661)
+-+.|-+|... +.-+.|-.+|..||.|+.|++++.+ .|.|.|+.
T Consensus 258 ~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVem 332 (494)
T KOG1456|consen 258 HGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEM 332 (494)
T ss_pred CCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEc
Confidence 45888889876 5667899999999999999999754 67899999
Q ss_pred CCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 234 EHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 234 ~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.+..+.++|+.-+ +..+-|.+|.|..++..
T Consensus 333 gd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 333 GDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 9999999999987 56788899999887643
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=5.2e-10 Score=88.95 Aligned_cols=71 Identities=30% Similarity=0.636 Sum_probs=65.1
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEE
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVK 258 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~ 258 (661)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|.+|++.++ ..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999874 88999998873
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=2.2e-10 Score=112.29 Aligned_cols=74 Identities=23% Similarity=0.361 Sum_probs=65.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
+++++.++++.+++++|+++|+.||+|.+|.|++++. ++|||||+|.++++|+.| + .+++..|.|+.|.|.+
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~A----l-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETA----L-LLSGATIVDQSVTITP 76 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHH----H-HhcCCeeCCceEEEEe
Confidence 4555556666999999999999999999999998753 579999999999999997 5 5999999999999988
Q ss_pred hh
Q psy15852 180 AK 181 (661)
Q Consensus 180 ~~ 181 (661)
+.
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 75
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.09 E-value=2.4e-10 Score=117.50 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=68.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCH--HHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE--SVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.+|||+||++.++++||+.+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..+ +..+.|+.|+|..|+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 5899999999999999999999999999999994 456 99999999987 6899999998 689999999999987
Q ss_pred CC
Q psy15852 262 PK 263 (661)
Q Consensus 262 ~k 263 (661)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 64
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=3.1e-10 Score=89.90 Aligned_cols=59 Identities=44% Similarity=0.580 Sum_probs=56.4
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 598 SHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 598 v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
|.|||..+++++|+++|++||.|..++++.++.+++++|+|||+|.+.++|.+|++.++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 57899999999999999999999999999998889999999999999999999999876
No 95
>KOG0128|consensus
Probab=99.07 E-value=2.7e-11 Score=132.77 Aligned_cols=302 Identities=12% Similarity=0.080 Sum_probs=203.0
Q ss_pred cEEEEcCCC-cCCHHHHH-HHhhcCCCeeE-EEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 101 KMVSHPGIV-HKITEELK-EHFSKYGEIEN-VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~-~~F~~~G~I~~-v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+...+.|.+ ....-.|. .+|+.++-+.. .+... ....+.+|+++-.++++|..+ ++.+.......-.+.+
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~---~R~~~R~ay~~~~~~~~~~ev----~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPS---ARKVLRKAYSQVVDPEDALEV----LEFFRRFEREYGTLES 552 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchh---HHHHHHHHHhcCcCchhHHHH----HHHHHHHHhccccHHH
Confidence 333344443 55666666 66665543211 22211 122556899999999999997 4444444333333322
Q ss_pred hhh------------hccCCeeEecCCCccCCHH-HHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHH
Q psy15852 178 KKA------------KAKSGKIFVGGLSPEMKDE-EIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244 (661)
Q Consensus 178 ~~~------------~~~~~~lfV~nLp~~~te~-~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 244 (661)
.-. .-+.....+.++.+..... .++..|..+|.|+.|.++......+...++++.+..+.+++.|..
T Consensus 553 ~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~ 632 (881)
T KOG0128|consen 553 FDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV 632 (881)
T ss_pred HhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc
Confidence 221 1122456777887765554 678899999999999988633323333478888888888888876
Q ss_pred hCCCccCCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q psy15852 245 NPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLV 324 (661)
Q Consensus 245 ~~~~~~~g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (661)
..+..+.++.+.|..+.++...
T Consensus 633 pa~~~~a~~~~av~~ad~~~~~---------------------------------------------------------- 654 (881)
T KOG0128|consen 633 PAGGALANRSAAVGLADAEEKE---------------------------------------------------------- 654 (881)
T ss_pred ccccccCCccccCCCCCchhhh----------------------------------------------------------
Confidence 6666666666555554443210
Q ss_pred CCCCCCCCCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccc
Q psy15852 325 CRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELE 404 (661)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~ 404 (661)
+ .-..+.+++++..+ +++.++.+.+.+++
T Consensus 655 ----------------~----------------------~~kvs~n~~R~~~~-------------~fvsnl~~~~~~~d 683 (881)
T KOG0128|consen 655 ----------------E----------------------NFKVSPNEIRDLIK-------------IFVSNLSPKMSEED 683 (881)
T ss_pred ----------------h----------------------ccCcCchHHHHHHH-------------HHHhhcchhhcCch
Confidence 0 00122244444332 34555666799999
Q ss_pred hhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcC
Q psy15852 405 IPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKI 484 (661)
Q Consensus 405 l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l 484 (661)
+...|..++ .+..+++.--..+++.+|+|+|.|..++.+.+||.....++
T Consensus 684 l~~~~~~~~------------------------------~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 684 LSERFSPSG------------------------------TIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred hhhhcCccc------------------------------hhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 999998884 45555555455678899999999999999999994443221
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCC
Q psy15852 485 NDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIG 564 (661)
Q Consensus 485 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (661)
-|
T Consensus 734 ~g------------------------------------------------------------------------------ 735 (881)
T KOG0128|consen 734 FG------------------------------------------------------------------------------ 735 (881)
T ss_pred hh------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcC
Q psy15852 565 KPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644 (661)
Q Consensus 565 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~ 644 (661)
+.++||.|+||..|+++|+.+|+++|.+.+++++..+. |+++|.|||.|.+
T Consensus 736 ----------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ 786 (881)
T KOG0128|consen 736 ----------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNT 786 (881)
T ss_pred ----------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCC
Confidence 34689999999999999999999999999999998876 9999999999999
Q ss_pred HHHHHHHHHhC
Q psy15852 645 TESLEKASVED 655 (661)
Q Consensus 645 ~e~A~~A~~~~ 655 (661)
..+|.++.++-
T Consensus 787 ea~~s~~~~s~ 797 (881)
T KOG0128|consen 787 EADASRKVASV 797 (881)
T ss_pred cchhhhhcccc
Confidence 99999988754
No 96
>KOG1365|consensus
Probab=99.06 E-value=9.5e-10 Score=110.08 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=115.3
Q ss_pred EcCCCcCCHHHHHHHhhcCC----CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 105 HPGIVHKITEELKEHFSKYG----EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 105 ~~~~~~~te~~L~~~F~~~G----~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
.+|++++++.|+.++|..-- -.+.|-.+..++ |+..|-|||.|..+++|+.|| ..+...|.-|.|.+.++
T Consensus 167 RGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL-----~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 167 RGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFAL-----RKHRQNIGQRYIELFRS 240 (508)
T ss_pred cCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHH-----HHHHHHHhHHHHHHHHH
Confidence 46677999999999997432 345666666554 999999999999999999973 33334444444433222
Q ss_pred h------------------------------------ccCCeeEecCCCccCCHHHHHHHHhcCC-CeEE--EEeccCCC
Q psy15852 181 K------------------------------------AKSGKIFVGGLSPEMKDEEIKAHFAQFG-NIIE--TEMPYDKS 221 (661)
Q Consensus 181 ~------------------------------------~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~--v~i~~~~~ 221 (661)
. ....+|.+++||+..+.+||.++|..|. .|.. |+++.+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 1 1126899999999999999999999987 3443 67777654
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 222 KSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 222 ~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
|+..|-|||+|.+.++|..|.... ++..+.|.|+|-.+...+
T Consensus 321 -GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 321 -GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred -CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 899999999999999999998876 455678999998876543
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=8.5e-10 Score=87.37 Aligned_cols=70 Identities=30% Similarity=0.605 Sum_probs=64.6
Q ss_pred ecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEE
Q psy15852 189 VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVK 258 (661)
Q Consensus 189 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~ 258 (661)
|+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|.+|++.++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888788999999999999999999999884 78899988773
No 98
>KOG0130|consensus
Probab=99.04 E-value=1.7e-10 Score=99.07 Aligned_cols=76 Identities=21% Similarity=0.433 Sum_probs=70.1
Q ss_pred EEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 102 MVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 102 ~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
+++|.+. +.++|++|.+.|..||+|..++|-.|..||-.||||+|+|.+.++|++| +..+|+..|.+++|.|.|+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A----~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAA----IDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHH----HHhccchhhhCCceeEEEE
Confidence 4555554 5999999999999999999999999999999999999999999999999 9999999999999999986
Q ss_pred h
Q psy15852 181 K 181 (661)
Q Consensus 181 ~ 181 (661)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 3
No 99
>KOG0107|consensus
Probab=99.03 E-value=3.1e-10 Score=102.26 Aligned_cols=74 Identities=30% Similarity=0.440 Sum_probs=66.8
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.|||+||+ .+++.||+.+|..||+|.+|.|.+++ .|||||+|+++.||+.| +..|++..|.|..|.|+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DA----vr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDA----VRYLDGKDICGSRIRVE 80 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHH----HhhcCCccccCceEEEE
Confidence 5678888887 99999999999999999999999864 58999999999999999 99999999999999887
Q ss_pred hhhc
Q psy15852 179 KAKA 182 (661)
Q Consensus 179 ~~~~ 182 (661)
...-
T Consensus 81 ~S~G 84 (195)
T KOG0107|consen 81 LSTG 84 (195)
T ss_pred eecC
Confidence 6653
No 100
>KOG0116|consensus
Probab=99.02 E-value=1.7e-09 Score=114.24 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=70.1
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
..|||+|||.+++.++|+++|.+||.|+...|....-.++...||||+|.+.++++.||.+....++++++.|+...+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999887764422444599999999999999999999889999999998876644
Q ss_pred C
Q psy15852 265 E 265 (661)
Q Consensus 265 ~ 265 (661)
.
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 3
No 101
>KOG0111|consensus
Probab=99.01 E-value=3e-10 Score=105.45 Aligned_cols=84 Identities=24% Similarity=0.519 Sum_probs=78.9
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~ 261 (661)
..++|||++|..+++|.-|...|-+||.|.+|.++.|..+++.+|||||+|.-.|+|.+||..|+ ..|.||.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999985 79999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
|..-.
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87643
No 102
>KOG0129|consensus
Probab=99.00 E-value=4.8e-09 Score=109.83 Aligned_cols=161 Identities=19% Similarity=0.350 Sum_probs=120.5
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCC-C--Cccc---EEEEEEeehhhHHHhhHHHHHHhCCe-ee-
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNT-G--RSRG---FAFIVFKDTESLEKASVEDVIAEGNH-VI- 170 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~t-g--~srG---~afV~F~~~e~A~~A~~~~~~~~~~~-~i- 170 (661)
.+++|+++++++++|++|...|..||.+ .|.++..... + ..+| |+|+.|+++.++.. |..++....+. .|
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~-Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQS-LLSACSEGEGNYYFK 336 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHH-HHHHHhhcccceEEE
Confidence 4678889999999999999999999986 4566632211 1 2567 99999999999887 33324432222 22
Q ss_pred ------cceeehhhhhh--------------ccCCeeEecCCCccCCHHHHHHHHh-cCCCeEEEEeccCCCCCCcCcEE
Q psy15852 171 ------NNKKIEAKKAK--------------AKSGKIFVGGLSPEMKDEEIKAHFA-QFGNIIETEMPYDKSKSQRKNFC 229 (661)
Q Consensus 171 ------~g~~i~v~~~~--------------~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~a 229 (661)
..+.+.|.+.. ...++|||++||..++.++|..+|. -||.|..+-|-.|++-+-++|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 22333333321 2338999999999999999999999 59999999999998889999999
Q ss_pred EEEeCCHHHHHHHHHhC----CCccCCeEEEEEecc
Q psy15852 230 FITFEHESVVIDLLKNP----KQKINDKEVDVKKAT 261 (661)
Q Consensus 230 fV~f~~~~~A~~Al~~~----~~~~~g~~i~V~~a~ 261 (661)
=|+|.+..+-.+||.+- .+.--.++|+|++-.
T Consensus 417 RVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred eeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 99999999999999884 232233578887655
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.00 E-value=9.4e-10 Score=87.84 Aligned_cols=61 Identities=21% Similarity=0.499 Sum_probs=55.4
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeCCCC--CCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 113 TEELKEHFS----KYGEIENVT-LKSDPNT--GRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 113 e~~L~~~F~----~~G~I~~v~-l~~~~~t--g~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+++|+++|+ +||.|.+|. |+.++.+ ++++|||||+|.+.++|.+| +..+|+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A----~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARA----IVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHH----HHHhCCCEECCEEEEe
Confidence 678999999 999999995 7777766 89999999999999999999 9999999999999865
No 104
>KOG0106|consensus
Probab=99.00 E-value=7.8e-10 Score=105.65 Aligned_cols=72 Identities=19% Similarity=0.451 Sum_probs=63.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.++||++||+.+.+.+|+.+|..||.|.+|.+. .||+||+|.+..+|..|+..+ +..|.+..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999999874 688999999999999999887 57888888888888754
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.99 E-value=1.1e-09 Score=105.68 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=63.3
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++++.++.+.+|+++|+++|+.||+|.+|+|+++ +..+|||||+|.++++|+.| +.|++..|.+++|.|.++
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetA-----llLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETA-----VLLSGATIVDQRVCITRW 78 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHH-----HhcCCCeeCCceEEEEeC
Confidence 4555555569999999999999999999999998 45668999999999999995 689999999999988765
Q ss_pred h
Q psy15852 181 K 181 (661)
Q Consensus 181 ~ 181 (661)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 106
>smart00362 RRM_2 RNA recognition motif.
Probab=98.99 E-value=2e-09 Score=85.48 Aligned_cols=70 Identities=34% Similarity=0.542 Sum_probs=62.3
Q ss_pred EEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 102 MVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 102 ~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+++.++++.+++++|+++|++||+|..+.+..++ +.++|+|||+|.+.++|++| +..+++..+.|+++.|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a----~~~~~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKA----IEALNGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHH----HHHhCCcEECCEEEee
Confidence 4555555699999999999999999999999876 78899999999999999999 8889999999988875
No 107
>PLN03213 repressor of silencing 3; Provisional
Probab=98.96 E-value=1.2e-09 Score=112.43 Aligned_cols=75 Identities=24% Similarity=0.299 Sum_probs=65.2
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeeh--hhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDT--ESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~--e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
-+++|++|.+++++++|+.+|+.||.|.+|.|++ .|| ||||||+|.+. .++.+| +..||+..+.|+.|+|
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKA----ISaLNGAEWKGR~LKV 82 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKL----FSTYNGCVWKGGRLRL 82 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHH----HHHhcCCeecCceeEE
Confidence 3455555556999999999999999999999995 456 99999999998 678888 9999999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
..+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 88764
No 108
>KOG0111|consensus
Probab=98.95 E-value=3.6e-10 Score=104.94 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
...+++||+.+. +++|.-|...|-.||.|.+|.++.|-.++++||||||+|...|||.+| +..+|..+|.||.|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaA----iDNMnesEL~Grtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAA----IDNMNESELFGRTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHH----hhcCchhhhcceeEE
Confidence 345566666665 999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccC
Q psy15852 177 AKKAKAKS 184 (661)
Q Consensus 177 v~~~~~~~ 184 (661)
|..++|..
T Consensus 84 VN~AkP~k 91 (298)
T KOG0111|consen 84 VNLAKPEK 91 (298)
T ss_pred EeecCCcc
Confidence 99998754
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=5.2e-09 Score=83.58 Aligned_cols=73 Identities=26% Similarity=0.581 Sum_probs=65.9
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEe
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKK 259 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~ 259 (661)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ ..+++|||+|.+.++|..|++.+. ..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 678999999999999999999984 559999998864
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=4e-09 Score=84.25 Aligned_cols=63 Identities=37% Similarity=0.492 Sum_probs=58.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 595 KMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
+|+|.+||+.+++++|+++|..||.|..+++..++.+ .++|+|||+|.+.++|..|+..++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4899999999999999999999999999999998774 88999999999999999999987654
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=4.3e-09 Score=107.68 Aligned_cols=79 Identities=23% Similarity=0.563 Sum_probs=75.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||..+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|..|+..++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998889999999999999999999999985 899999999999764
No 112
>KOG0108|consensus
Probab=98.90 E-value=3.2e-09 Score=112.88 Aligned_cols=81 Identities=22% Similarity=0.455 Sum_probs=77.4
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.++|.+|++.+ +.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999998 58999999999998876
Q ss_pred CC
Q psy15852 264 PE 265 (661)
Q Consensus 264 ~~ 265 (661)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=3.2e-09 Score=80.76 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=50.2
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 116 L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
|+++|++||+|.+|.+..++ +++|||+|.+.++|++| +..+|+..+.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a----~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKA----IEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHH----HHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHH----HHHhCCCEECCcEEEEEEC
Confidence 78999999999999998753 68999999999999999 8999999999999998764
No 114
>KOG0415|consensus
Probab=98.84 E-value=3.1e-09 Score=105.39 Aligned_cols=85 Identities=26% Similarity=0.378 Sum_probs=79.1
Q ss_pred eeecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 94 YIMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
...++.+-+|+.+|.|-+++++|.-+|+.||+|.+|.|++|..||-+.-||||+|.+.+++++| .-.+++..|..+
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~A----yFKMdNvLIDDr 309 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQA----YFKMDNVLIDDR 309 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHH----Hhhhcceeeccc
Confidence 3556778899999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred eehhhhhhc
Q psy15852 174 KIEAKKAKA 182 (661)
Q Consensus 174 ~i~v~~~~~ 182 (661)
.|.|.++..
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999987764
No 115
>KOG0108|consensus
Probab=98.83 E-value=4.6e-09 Score=111.63 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=72.6
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
..++|++.+++++|++|.++|++.|+|.+++++.|+.||++|||||++|.+.++|..| +..+|+..+.|++|+|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a----~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERA----IRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHH----HHhcCCcccCCceEEeec
Confidence 4455555555999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+...
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 7643
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.83 E-value=1.2e-08 Score=81.43 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=53.1
Q ss_pred HHHHHHHHh----cCCCeEEEE-eccCCCC--CCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 198 DEEIKAHFA----QFGNIIETE-MPYDKSK--SQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 198 e~~L~~~F~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.+ +..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6666666 889999999999999999999987 68999999876
No 117
>KOG0128|consensus
Probab=98.80 E-value=1.1e-09 Score=120.52 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=121.0
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
+.|+..+++.+.+++|...|..+|.+..+++...+++++.||+|||+|..+++|.+| +.....+.+.
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa----V~f~d~~~~g--------- 735 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA----VAFRDSCFFG--------- 735 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh----hhhhhhhhhh---------
Confidence 355666667999999999999999998888887778899999999999999999997 5444444333
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
...++|+|+|+..|.++|+.+++++|.+.+..++..+. |+++|.|+|.|.++.++.+++... ...+.-+.+.|..
T Consensus 736 ---K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 ---KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ---hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 34699999999999999999999999999998887665 999999999999999999998886 3455556666666
Q ss_pred ccCC
Q psy15852 260 ATPK 263 (661)
Q Consensus 260 a~~k 263 (661)
..+.
T Consensus 812 snp~ 815 (881)
T KOG0128|consen 812 SNPE 815 (881)
T ss_pred cCCc
Confidence 5553
No 118
>KOG4210|consensus
Probab=98.79 E-value=6.7e-09 Score=105.57 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=127.0
Q ss_pred CcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.++++.. ..+.+.++..++..+|.+..+.+........++|++++.|...+.+..| +.......+.+..+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~----l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAA----LEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHH----HHhhhccccccccccCc
Confidence 344444444 4777777899999999988888887777788999999999999999997 33222233333333221
Q ss_pred hhh---------------ccCCeeE-ecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q psy15852 179 KAK---------------AKSGKIF-VGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242 (661)
Q Consensus 179 ~~~---------------~~~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 242 (661)
... ....++| |.+|++.+++++|+.+|..+|.|..++++.++.++.++|||+|.|.....+.++
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 110 1124555 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCCeEEEEEeccCCCCC
Q psy15852 243 LKNPKQKINDKEVDVKKATPKPEP 266 (661)
Q Consensus 243 l~~~~~~~~g~~i~V~~a~~k~~~ 266 (661)
+......+.++++.+....+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 244 LNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhcccCcccCcccccccCCCCccc
Confidence 887557889999999988876543
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.78 E-value=2.5e-08 Score=75.83 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 201 IKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 201 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
|.++|++||+|..+.+..+. +++|||+|.+.++|.+|++.+ +..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 699999999999999999976 68899999999985
No 120
>KOG4208|consensus
Probab=98.69 E-value=2.8e-08 Score=92.40 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh-CCcccC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKY-GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE-DVYFYS 660 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~-G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~-~~~~~~ 660 (661)
...-++|.++|+-+.+.+|..+|.+| |.|..+++-|++.||.|+|||||+|++++.|+.|-+. ++||++
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34568999999999999999999999 7888899989999999999999999999999999885 555543
No 121
>KOG0415|consensus
Probab=98.68 E-value=2e-08 Score=99.79 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=78.2
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
.|+.+-|||.-|.+-++++||+-+|+.||+|.+|.+++|..||.+-.||||+|++.+++++|.=+| +..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 466789999999999999999999999999999999999999999999999999999999998777 7899999999998
Q ss_pred ccCCC
Q psy15852 260 ATPKP 264 (661)
Q Consensus 260 a~~k~ 264 (661)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87654
No 122
>KOG4208|consensus
Probab=98.67 E-value=2.9e-08 Score=92.32 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=69.1
Q ss_pred cCCCcEEEEcCCC-cCCHHHHHHHhhcC-CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee
Q psy15852 97 EAKNKMVSHPGIV-HKITEELKEHFSKY-GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174 (661)
Q Consensus 97 ~~~~~~~~~~~~~-~~te~~L~~~F~~~-G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~ 174 (661)
.....++|+.-+| -+.+.+|..+|.+| |.|+.+++-+++.||.|||||||+|++++.|+-| +..+|+..+.++-
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~Ia----AETMNNYLl~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIA----AETMNNYLLMEHL 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHH----HHHhhhhhhhhhe
Confidence 3445677777777 88999999999999 7899999999999999999999999999999999 9999999998877
Q ss_pred ehhhh
Q psy15852 175 IEAKK 179 (661)
Q Consensus 175 i~v~~ 179 (661)
+.+..
T Consensus 122 L~c~v 126 (214)
T KOG4208|consen 122 LECHV 126 (214)
T ss_pred eeeEE
Confidence 66543
No 123
>KOG4660|consensus
Probab=98.66 E-value=5.3e-07 Score=95.59 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=102.1
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+++++++.++++++++++|..+|+.||+|.+|+.-+ ..+|.+||+|.+..+|++| +.+++...+.|+.|+.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~A----lk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERA----LKALNRREIAGKRIKR 144 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHH----HHHHHHHHhhhhhhcC
Confidence 456788888888999999999999999999975544 4578999999999999999 9999999999988873
Q ss_pred hhhhccC---------------------------CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEE
Q psy15852 178 KKAKAKS---------------------------GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCF 230 (661)
Q Consensus 178 ~~~~~~~---------------------------~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~af 230 (661)
....... -.+|+- |++..+..-++..++-+|.+.. +. ++.-...-|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~ 217 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRF 217 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhhhhh
Confidence 2211100 234433 7777777666667777776654 22 122223467
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 231 ITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 231 V~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
+.|.+..++..++..++..+.+....+.+.
T Consensus 218 ~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRGGFLISNSSGVITFS 247 (549)
T ss_pred hhhccccchhhcccCCceecCCCCceEEec
Confidence 778777777555544445555555444443
No 124
>KOG4454|consensus
Probab=98.66 E-value=5.8e-09 Score=97.24 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=111.5
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++++.|+. .++|+-|.++|-+-|+|..|.|+.+++ ++.| ||||.|.++-+...| +..+|+..+.++++.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a----~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLA----GQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhh----hhhcccchhccchhhcc
Confidence 3455566665 999999999999999999999999876 6777 999999999999999 89999999999888774
Q ss_pred hhhccCCeeEecC----CCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 179 KAKAKSGKIFVGG----LSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 179 ~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
++.++ |...++++.+...|+.-+++..+++..+.+ ++++.+.|+.+...-+.-.++..
T Consensus 83 --------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 83 --------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred --------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 55566 778899999999999999999999999877 88899999988766555555544
No 125
>KOG0153|consensus
Probab=98.57 E-value=1.6e-07 Score=93.64 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=66.7
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC--CCccCCeEEEEEeccC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP--KQKINDKEVDVKKATP 262 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~--~~~~~g~~i~V~~a~~ 262 (661)
.+|||++|-..+++.+|+++|.+||+|+++.+... +++|||+|.+.++|++|.++. ...|+|++|.|.|..+
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 78999999999999999999999999999999754 679999999999999999886 3678999999999887
Q ss_pred C
Q psy15852 263 K 263 (661)
Q Consensus 263 k 263 (661)
+
T Consensus 303 ~ 303 (377)
T KOG0153|consen 303 K 303 (377)
T ss_pred c
Confidence 3
No 126
>KOG1548|consensus
Probab=98.54 E-value=1e-06 Score=87.95 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=120.0
Q ss_pred cccc-ccccCCCCCcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEE
Q psy15852 387 VADN-LLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFI 465 (661)
Q Consensus 387 ~~~~-~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV 465 (661)
..+. ++|.++.+++|.+++.++|+.++.+....+++ --.|++-++.. |+.+|-|.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~----------------------epk~KlYrd~~-G~lKGDaLc 188 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTG----------------------EPKVKLYRDNQ-GKLKGDALC 188 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCC----------------------CeeEEEEecCC-CCccCceEE
Confidence 3444 45554444599999999999986432211111 13456666655 899999999
Q ss_pred EeCChHHHHHHHhCC-CCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q psy15852 466 TFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQ 544 (661)
Q Consensus 466 ~F~~~e~A~~Ai~~~-~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~ 544 (661)
+|-..+++.-|+..+ ...+.|+.|.|..|.-.....- ..
T Consensus 189 ~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~-------------------------------------~~--- 228 (382)
T KOG1548|consen 189 CYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEY-------------------------------------DA--- 228 (382)
T ss_pred EeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCc-------------------------------------Cc---
Confidence 999999999999544 4778999999998874421100 00
Q ss_pred cccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCC----CCC-------HHHHHHH
Q psy15852 545 FFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIV----DKI-------TEELKEH 613 (661)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~----~~t-------e~dL~~~ 613 (661)
+ ........+.-.-.....+.++........+.....++|+++|+-. +.+ ++||++-
T Consensus 229 ---------~---~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ee 296 (382)
T KOG1548|consen 229 ---------S---KKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEE 296 (382)
T ss_pred ---------c---cccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHH
Confidence 0 0000000000000001111111111111122234467888888854 444 4678888
Q ss_pred hhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 614 FSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 614 F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
|.+||+|.+|.|.-.+ +.|.+-|.|.|.++|..+|.-++.=|
T Consensus 297 c~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 297 CEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCee
Confidence 9999999999888544 58889999999999999999876533
No 127
>KOG0226|consensus
Probab=98.53 E-value=4e-08 Score=93.89 Aligned_cols=143 Identities=20% Similarity=0.338 Sum_probs=116.8
Q ss_pred HHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh-----------hccCC
Q psy15852 117 KEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA-----------KAKSG 185 (661)
Q Consensus 117 ~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~-----------~~~~~ 185 (661)
...|+.|-.+...+++++.. +.-++++|+.|.....-.++ ....+++.+.-.+++.... ...+.
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~----~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~Df 191 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKA----ETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDF 191 (290)
T ss_pred hhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhh----ccccccccccCcceeeccccccCCcccccCccccc
Confidence 67788887777777887654 77889999999887777776 5555666665554443222 12347
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
+||.+.|..+++++.|...|.+|-.-...++++++.|++++||+||.|.+.+++..|++.+ +.+++.++|.++....+.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999999998888999999999999999999999999999999998 688999999988766654
No 128
>KOG0132|consensus
Probab=98.51 E-value=1.9e-07 Score=101.83 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=69.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||+.|+..+++.||..+|+.||+|.+|.++. ++++|||+.....+|.+|+.++ +..+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 7999999999999999999999999999999854 4899999999999999999998 68999999999999876
Q ss_pred CC
Q psy15852 264 PE 265 (661)
Q Consensus 264 ~~ 265 (661)
.-
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 43
No 129
>KOG0112|consensus
Probab=98.44 E-value=1.2e-07 Score=104.99 Aligned_cols=157 Identities=17% Similarity=0.293 Sum_probs=129.0
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
.+++++..++...+++.+|+..|..+|.|.+|.|..-+. ++---|+||.|.+-..+-.| ...+.+..|..-.+.+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~a----k~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSA----KFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCccc----chhhcCCccccCcccc
Confidence 356677777777999999999999999999999987533 55555999999999999999 8888888886666666
Q ss_pred hhhhc---cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC-
Q psy15852 178 KKAKA---KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND- 252 (661)
Q Consensus 178 ~~~~~---~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g- 252 (661)
....+ ..+.+++++|+.++....|...|..||.|..|.+ .+..-||+|.|++...|+.|+..+ +..|.+
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy------~hgq~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY------RHGQPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeec------ccCCcceeeecccCccchhhHHHHhcCcCCCC
Confidence 55532 3478999999999999999999999999999888 334679999999999999999887 566655
Q ss_pred -eEEEEEeccCCCC
Q psy15852 253 -KEVDVKKATPKPE 265 (661)
Q Consensus 253 -~~i~V~~a~~k~~ 265 (661)
+.+.|.++.+...
T Consensus 520 ~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 520 PRRLRVDLASPPGA 533 (975)
T ss_pred CcccccccccCCCC
Confidence 6788888876543
No 130
>KOG0226|consensus
Probab=98.38 E-value=9.1e-07 Score=84.74 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcccC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS 660 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~~ 660 (661)
.-+||++.|-.+++++-|...|.+|-.....++++|+.||+++|||||.|.+++|+..|+.+++.-|-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999988774
No 131
>KOG0132|consensus
Probab=98.25 E-value=1.2e-06 Score=95.82 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=76.6
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
+||++.++...++|.||..+|+.||+|.+|.++. +||||||.+....+|.+| +.+++...+..+.|++.|
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~ka----lqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKA----LQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHH----HHHHhcccccceeeEEee
Confidence 4556666666999999999999999999999986 478999999999999999 889999999999999999
Q ss_pred hhccC----------CeeEecCCCccCCHHHHHHHHh
Q psy15852 180 AKAKS----------GKIFVGGLSPEMKDEEIKAHFA 206 (661)
Q Consensus 180 ~~~~~----------~~lfV~nLp~~~te~~L~~~F~ 206 (661)
+..+- -.+=|.-||+..-..+|+.++.
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 86432 1234555677644444655553
No 132
>KOG0153|consensus
Probab=98.23 E-value=1.6e-06 Score=86.80 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=62.8
Q ss_pred CCcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
.-+++|++++ +.++|.+|+++|.+||+|.++.+...+ ++|||+|.+.++|++|+ ...++...|.|++|.|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aa---e~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAA---EKSFNKLVINGFRLKI 297 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHH---HhhcceeeecceEEEE
Confidence 3455555555 699999999999999999999998753 49999999999999982 3346788899999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 133
>KOG4661|consensus
Probab=98.22 E-value=2.4e-06 Score=89.89 Aligned_cols=80 Identities=16% Similarity=0.453 Sum_probs=73.2
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||.+|...+...||+.+|++||+|.-.+++.+..+.-.+.|+||++.+.++|.+||..+ ...|.|+.|.|..++..
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 68999999999999999999999999999999988777667999999999999999999998 57899999999988754
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
+
T Consensus 486 p 486 (940)
T KOG4661|consen 486 P 486 (940)
T ss_pred c
Confidence 4
No 134
>KOG0533|consensus
Probab=98.19 E-value=2.7e-06 Score=83.53 Aligned_cols=64 Identities=28% Similarity=0.351 Sum_probs=60.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..+|+|.|||+.++++||++||..||.+..|-|..|+. |++.|.|-|.|...+||++|+++.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcC
Confidence 47899999999999999999999999999999999986 99999999999999999999998775
No 135
>KOG4660|consensus
Probab=98.16 E-value=7.9e-05 Score=79.47 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=60.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
.++|+|-|||..+++++|+.+|+.||+|+.|+.- -..+|..||+|.+.-+|+.|++++ ...+.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4789999999999999999999999999996553 445899999999999999999998 4678888877
No 136
>KOG0116|consensus
Probab=98.16 E-value=7.6e-06 Score=86.84 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=62.4
Q ss_pred ccccCCCCCcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCCh
Q psy15852 391 LLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHE 470 (661)
Q Consensus 391 ~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~ 470 (661)
+++.++.+++++.+|.++|..| |+|....|....-.++..+||||+|.+.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~F------------------------------G~Ik~~~I~vr~~~~~~~~fgFV~f~~~ 340 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQF------------------------------GPIKEGGIQVRSPGGKNPCFGFVEFENA 340 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhc------------------------------ccccccceEEeccCCCcCceEEEEEeec
Confidence 4555555559999999999998 6688887766543444459999999999
Q ss_pred HHHHHHHhCCCCcCCCcEEEEecCCCCC
Q psy15852 471 SVVIDLLKNPKQKINDKEVDVKKATPKP 498 (661)
Q Consensus 471 e~A~~Ai~~~~~~l~g~~i~v~~a~~~~ 498 (661)
++++.||......+++++|.|....+..
T Consensus 341 ~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 341 AAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred chhhhhhhcCccccCCeeEEEEeccccc
Confidence 9999999888999999999997766543
No 137
>KOG4210|consensus
Probab=98.09 E-value=6.2e-06 Score=84.07 Aligned_cols=178 Identities=16% Similarity=0.280 Sum_probs=129.0
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~~ 262 (661)
.+++|++++...+.+.++..++..+|.+..+.+........+++++.+.|...+.+..|++... ..+.+..+.......
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 4789999999999999999999999988888887777778899999999999999999998865 344555444433332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
...+.... .....
T Consensus 168 ~~~~~~n~------------------------------------------------------------------~~~~~- 180 (285)
T KOG4210|consen 168 RGLRPKNK------------------------------------------------------------------LSRLS- 180 (285)
T ss_pred ccccccch------------------------------------------------------------------hcccc-
Confidence 21100000 00000
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcccccCCc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTTVPMTTT 421 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~~~~~~~ 421 (661)
......++...+++. ++.++|+.+|...
T Consensus 181 ------------------------------------------~~~s~~~~~~~~~~f~~~~d~~~~~~~~~--------- 209 (285)
T KOG4210|consen 181 ------------------------------------------SGPSDTIFFVGELDFSLTRDDLKEHFVSS--------- 209 (285)
T ss_pred ------------------------------------------cCccccceeecccccccchHHHhhhccCc---------
Confidence 000111221223333 7777777766665
Q ss_pred ccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCC
Q psy15852 422 EHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEP 500 (661)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~ 500 (661)
|+|..++++.++.++..+|||+|.|.....+..++......+.++.+.+....+.+..
T Consensus 210 ---------------------~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 210 ---------------------GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred ---------------------CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCccc
Confidence 8899999999999999999999999999999999966557788999999888777544
No 138
>KOG0533|consensus
Probab=98.08 E-value=3.5e-05 Score=75.78 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=73.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..+.+|+|.|||+.++++||+++|..||.++.+-+-.++. |.+.|.|-|.|...++|.+|++.. +..++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3456899999999999999999999999999988888775 899999999999999999999997 68899999999877
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 139
>KOG4454|consensus
Probab=98.05 E-value=2.2e-06 Score=80.33 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=68.6
Q ss_pred hhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEE
Q psy15852 180 AKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVK 258 (661)
Q Consensus 180 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~ 258 (661)
+.+.+++|||.|+...++|+-|.++|-+-|+|..|.|+.+++ ++.+ ||||.|.++-+..-|++.+ +..+.++.+.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345568999999999999999999999999999999998876 5555 9999999999999999987 577888888776
Q ss_pred ec
Q psy15852 259 KA 260 (661)
Q Consensus 259 ~a 260 (661)
+-
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 53
No 140
>KOG4209|consensus
Probab=98.03 E-value=1.3e-05 Score=79.11 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=75.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
....+||+|+.+.++.++++..|+.||.|..+.++.++.++.++||+||+|.+.+..++|+...+..+.++.|.|.+...
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeee
Confidence 34789999999999999999999999999999999999999999999999999999999999668899999999998776
Q ss_pred C
Q psy15852 263 K 263 (661)
Q Consensus 263 k 263 (661)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 5
No 141
>KOG0129|consensus
Probab=98.01 E-value=5.9e-05 Score=79.73 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=61.2
Q ss_pred ccCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 590 VEAKNKMVSHPGIVDKITEELKEHFS-KYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 590 ~~~~~~l~v~nlp~~~te~dL~~~F~-~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
.+..++|||+.||--++-+||-.+|. -||.|.+|-|=+|++=+-++|-|-|+|.+...=.+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45678999999999999999999998 899999999999988899999999999999999999985
No 142
>KOG4661|consensus
Probab=98.01 E-value=8.1e-06 Score=86.06 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=68.5
Q ss_pred EEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 102 MVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 102 ~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
++|.+|...+-..+|+.+|++||+|+-.+|+.+..+--.|.|+||++.+.++|.+| |..|+...|+|+-|.|..++
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkC----I~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKC----IEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHH----HHHhhhhhhcceeeeeeecc
Confidence 44444545777889999999999999999999988777899999999999999999 99999999999999998876
Q ss_pred cc
Q psy15852 182 AK 183 (661)
Q Consensus 182 ~~ 183 (661)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.95 E-value=3.2e-05 Score=64.98 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSK--YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~--~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
++|.|+|+|...|.++|.+++.. .|...-+.+|.|..++.+.|||||.|.+++.|.+-.+.-|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 68999999999999998888754 4788899999999999999999999999999998776543
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.92 E-value=5.1e-05 Score=63.80 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=65.0
Q ss_pred CeeEecCCCccCCHHHHHHHHhc--CCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC----CeEEEE
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQ--FGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN----DKEVDV 257 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~----g~~i~V 257 (661)
++|.|+|||...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|.+-.+.. +..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998865 467788899999999999999999999999999888774 44332 466778
Q ss_pred EeccC
Q psy15852 258 KKATP 262 (661)
Q Consensus 258 ~~a~~ 262 (661)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 145
>KOG4676|consensus
Probab=97.91 E-value=6.9e-06 Score=83.21 Aligned_cols=141 Identities=14% Similarity=0.196 Sum_probs=109.6
Q ss_pred EEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCC---CCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 102 MVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNT---GRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 102 ~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~t---g~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+|-+.|+ |+++.++++.||...|+|.+++|+.+... ......|||.|.+...+..| +.|.+.++-++.|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-----QhLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-----QHLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-----hhhccceeeeeeEEE
Confidence 5656665 59999999999999999999999875432 23455999999999999995 666666666666555
Q ss_pred hhhhccC-------------------------------------------------------------CeeEecCCCccC
Q psy15852 178 KKAKAKS-------------------------------------------------------------GKIFVGGLSPEM 196 (661)
Q Consensus 178 ~~~~~~~-------------------------------------------------------------~~lfV~nLp~~~ 196 (661)
.++.... ++++|.+|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 3321100 679999999999
Q ss_pred CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccC
Q psy15852 197 KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 251 (661)
Q Consensus 197 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~ 251 (661)
...++-++|..+|+|...++.. +...-+|-+.|....+...|+..++..+.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 9999999999999998887754 33466778999999999999988876554
No 146
>KOG0151|consensus
Probab=97.68 E-value=6.5e-05 Score=81.69 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=76.4
Q ss_pred ccccceeeeeecCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCC---CCCCcccEEEEEEeehhhHHHhhHHH
Q psy15852 86 QILRTHFFYIMEAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDP---NTGRSRGFAFIVFKDTESLEKASVED 161 (661)
Q Consensus 86 ~~~r~~~~~~~~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~---~tg~srG~afV~F~~~e~A~~A~~~~ 161 (661)
+..++.-+...++..+++|++|+. .++++.|...|..||+|.+|+|+.-. ...+.+-|+||-|.+..||++|
T Consensus 160 ~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era---- 235 (877)
T KOG0151|consen 160 PSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERA---- 235 (877)
T ss_pred CCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHH----
Confidence 334444555667778888888876 99999999999999999999998632 1234677999999999999999
Q ss_pred HHHhCCeeecceeehhhhhh
Q psy15852 162 VIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 162 ~~~~~~~~i~g~~i~v~~~~ 181 (661)
+..+++..+.+..++..|.+
T Consensus 236 ~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 236 LKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred HHHhcceeeeeeeeeecccc
Confidence 99999999999999999985
No 147
>KOG1995|consensus
Probab=97.67 E-value=0.00013 Score=74.12 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=73.6
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeE--------EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNII--------ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK 253 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~ 253 (661)
...+|||-+||..+++++|.++|.++|.|. .|+|-++++|+..|+-|.|.|.+...|+.|+.-. +..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999999774 3567788899999999999999999999999886 6788999
Q ss_pred EEEEEeccCCCC
Q psy15852 254 EVDVKKATPKPE 265 (661)
Q Consensus 254 ~i~V~~a~~k~~ 265 (661)
.|+|.+|..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999987764
No 148
>KOG4209|consensus
Probab=97.64 E-value=4.6e-05 Score=75.15 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=67.1
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..+.+++++.. .++.+++..+|+.||.|..|.|+.++.++++|||+||+|.+.+.+..| +.+++..|.++.+.|
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~a-----y~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEA-----YKLDGSEIPGPAIEV 174 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHH-----hhcCCccccccccee
Confidence 34455555554 888888999999999999999999999999999999999999999996 449999999999988
Q ss_pred hhhh
Q psy15852 178 KKAK 181 (661)
Q Consensus 178 ~~~~ 181 (661)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7654
No 149
>KOG0151|consensus
Probab=97.61 E-value=9e-05 Score=80.67 Aligned_cols=85 Identities=18% Similarity=0.381 Sum_probs=73.5
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCC---CCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK---SKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
.|..++|||+||++.++++.|...|..||+|.+++|+.-+ +..+.+.++||.|-+..+|++|++.+ ++.+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4556899999999999999999999999999999988533 23556789999999999999999998 6889999999
Q ss_pred EEeccCCCC
Q psy15852 257 VKKATPKPE 265 (661)
Q Consensus 257 V~~a~~k~~ 265 (661)
+.|.+.-.-
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999866544
No 150
>KOG4849|consensus
Probab=97.60 E-value=0.00013 Score=72.93 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=65.3
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCC--CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFG--NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
.++||+||-|++|++||.+.+...| .+.++++..++.+|.+||||+|...+..+..+.++.+ ..+|.|+.-.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4799999999999999999988877 6677888888888999999999999988888888888 47899987666543
No 151
>KOG4676|consensus
Probab=97.54 E-value=3e-05 Score=78.69 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=61.3
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC---CCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK---SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
-|.|.||.+.++.++++.+|...|+|..+.|...... ....-.|||.|.+...+..|...-+..+-++.|.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 5889999999999999999999999999988763322 334567999999999888887766777777777776543
No 152
>KOG2193|consensus
Probab=97.53 E-value=2.2e-05 Score=80.32 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=114.3
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe-eecceeehhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH-VINNKKIEAK 178 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~-~i~g~~i~v~ 178 (661)
++.+..|.|.++..+|..+|...-. ...-.|+ -.||+||.+.+...|.+| +..++++ .+.|+.+.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~ka----ie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKA----IETLSGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhh----HHhhchhhhhcCceeecc
Confidence 3444555579999999999976511 1111122 247999999999999999 8888775 6889999888
Q ss_pred hhhcc---CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEec-cCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe
Q psy15852 179 KAKAK---SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP-YDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK 253 (661)
Q Consensus 179 ~~~~~---~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~ 253 (661)
...++ ++++-|+|+|+...++.|..++.+||.++.|... .+..+ -..-|+|.+.+.++.||..+ ++.+...
T Consensus 72 ~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 72 HSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQ 147 (584)
T ss_pred chhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhh
Confidence 76554 4789999999999999999999999999998653 33322 22347888999999999987 5788888
Q ss_pred EEEEEeccCCC
Q psy15852 254 EVDVKKATPKP 264 (661)
Q Consensus 254 ~i~V~~a~~k~ 264 (661)
.+.|.+.....
T Consensus 148 ~~k~~YiPdeq 158 (584)
T KOG2193|consen 148 HLKVGYIPDEQ 158 (584)
T ss_pred hhhcccCchhh
Confidence 99998876544
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.37 E-value=0.00036 Score=60.07 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=37.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
.-|.|.+++.+++.++|+++|+.||.|.+|.+.+... .|+|.|.++++|.+|+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHH
Confidence 3578888999999999999999999999999997554 8999999999999999863
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.36 E-value=0.00067 Score=54.36 Aligned_cols=68 Identities=9% Similarity=0.210 Sum_probs=45.7
Q ss_pred eeEecCCCccCCHHH----HHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 186 KIFVGGLSPEMKDEE----IKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 186 ~lfV~nLp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
-|+|.|||.+.+... |++++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.+ +..+-|.+|.|++
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 589999999888764 566667787 66554 1467999999999999999998 6788999999998
Q ss_pred ccCC
Q psy15852 260 ATPK 263 (661)
Q Consensus 260 a~~k 263 (661)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7543
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00048 Score=51.27 Aligned_cols=52 Identities=25% Similarity=0.391 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~ 652 (661)
+.|-|.+.|.+..+ +|..+|..||+|..+.+..... +.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 45777788876664 4555999999999988884444 8999999999999995
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.24 E-value=0.0005 Score=59.23 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=42.1
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC------CCccCCeEEEEE
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP------KQKINDKEVDVK 258 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~------~~~~~g~~i~V~ 258 (661)
-|+|.+++..++.++|++.|++||.|..|.+.+. ...|||.|.+.++|++|++.. ...+.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4788899999999999999999999999999764 335999999999999999874 234555555444
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.00078 Score=67.24 Aligned_cols=87 Identities=15% Similarity=0.304 Sum_probs=62.5
Q ss_pred EEEEcCCCcCCHHH----H--HHHhhcCCCeeEEEEeeCCCC-CCcccEE--EEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 102 MVSHPGIVHKITEE----L--KEHFSKYGEIENVTLKSDPNT-GRSRGFA--FIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 102 ~~~~~~~~~~te~~----L--~~~F~~~G~I~~v~l~~~~~t-g~srG~a--fV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
+.+++++|.+..|+ | .++|.+||.|..|.|-+...+ ....+.+ ||.|.+.|+|.+| |.+.++..++|
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarc----Ia~vDgs~~DG 192 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARC----IAEVDGSLLDG 192 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHH----HHHhccccccC
Confidence 33455556554444 3 479999999998877653211 1122333 9999999999999 99999999999
Q ss_pred eeehhhhhhccCCeeEecCC
Q psy15852 173 KKIEAKKAKAKSGKIFVGGL 192 (661)
Q Consensus 173 ~~i~v~~~~~~~~~lfV~nL 192 (661)
+.|+..+...+-|+-|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 99998877666555555555
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0025 Score=47.47 Aligned_cols=52 Identities=27% Similarity=0.614 Sum_probs=42.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHH
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al 243 (661)
+.|-|.+.+.+..+. +..+|..||+|..+.+. ....+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 457788998877755 55588999999999885 23668999999999999985
No 159
>KOG1995|consensus
Probab=96.79 E-value=0.0017 Score=66.05 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCee--------EEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIE--------NVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~--------~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i 170 (661)
..++++-.++..+++++|.++|.++|.|. .|+|-+++.|+..||-|.|.|.++..|+.| +.-+++..+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaa----i~~~agkdf 141 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAA----IEWFAGKDF 141 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhh----hhhhccccc
Confidence 34566666666999999999999999874 377888999999999999999999999999 999999999
Q ss_pred cceeehhhhhhccCC
Q psy15852 171 NNKKIEAKKAKAKSG 185 (661)
Q Consensus 171 ~g~~i~v~~~~~~~~ 185 (661)
.+..|+|..+.....
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999988876543
No 160
>KOG0115|consensus
Probab=96.78 E-value=0.0018 Score=62.86 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHhCCeeecceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHH
Q psy15852 162 VIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241 (661)
Q Consensus 162 ~~~~~~~~i~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 241 (661)
-.+|++....++.+.|.++.. ..|+|.||..-++.+.|++-|+.||+|....+..|.. ++..+-++|.|...-.|.+
T Consensus 11 k~eLd~~~~~~~~lr~rfa~~--a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~ 87 (275)
T KOG0115|consen 11 KRELDGRFPKGRSLRVRFAMH--AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARK 87 (275)
T ss_pred HHhcCCCCCCCCceEEEeecc--ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHH
Confidence 557899999999999999876 6899999999999999999999999999887776654 7788889999999999999
Q ss_pred HHHhC-----CCccCCeEEEEEeccCC
Q psy15852 242 LLKNP-----KQKINDKEVDVKKATPK 263 (661)
Q Consensus 242 Al~~~-----~~~~~g~~i~V~~a~~k 263 (661)
|+... ..+..+++.-|.+....
T Consensus 88 a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 88 AARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred HHHHhccCccccCCCCCccCCChhhcc
Confidence 98875 24566677766655443
No 161
>KOG0112|consensus
Probab=96.77 E-value=0.0017 Score=72.99 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCceEEeCCCCCCCCcHHHHHHHh-hhccccccccEEeecCCCCc-----eeeecccc--c--------cccccccccee
Q psy15852 29 DDRKLFCPLSSYLELDYLQLWQYF-DWVSSSFSENCLLEDSIGKP-----LTVSCSHH--Y--------YLFDQILRTHF 92 (661)
Q Consensus 29 ~~r~lfVg~l~~~~te~~~l~~~F-~~g~~~~~~~~~~~d~~~~~-----~~~~~~~~--~--------~l~~~~~r~~~ 92 (661)
.-++||+|+|+...++ .+|+..| .+| .+.++.+-.-..... +.+....+ . .+.....++..
T Consensus 371 atrTLf~Gnl~~kl~e-seiR~af~e~g--kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTE-SEIRPAFDESG--KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhcCcccchhh-hhhhhhhhhhc--cccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3589999999999999 9999999 998 666655433321111 11111111 0 11111111111
Q ss_pred ee-eecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeec
Q psy15852 93 FY-IMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN 171 (661)
Q Consensus 93 ~~-~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~ 171 (661)
-. .......+++.++.+.+....|...|..||+|..|.+-.. .-|+||+|.+...|+.| +..+.+..|.
T Consensus 448 G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a----~~~~rgap~G 517 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAA----THDMRGAPLG 517 (975)
T ss_pred cccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhh----HHHHhcCcCC
Confidence 11 2234456778888889999999999999999988776542 23999999999999999 8888888886
Q ss_pred c--eeehhhhhh
Q psy15852 172 N--KKIEAKKAK 181 (661)
Q Consensus 172 g--~~i~v~~~~ 181 (661)
+ +.+.|.++.
T Consensus 518 ~P~~r~rvdla~ 529 (975)
T KOG0112|consen 518 GPPRRLRVDLAS 529 (975)
T ss_pred CCCccccccccc
Confidence 5 445555554
No 162
>KOG2314|consensus
Probab=96.73 E-value=0.0033 Score=67.18 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=58.8
Q ss_pred CCCcEEEEcCCCcCCHH-------HHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee
Q psy15852 98 AKNKMVSHPGIVHKITE-------ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~-------~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i 170 (661)
.-+.++++.+.|-+-.+ -|..+|+++|+|..+.++.+.. |.++||.|++|.+..+|+.| +..+||+.|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~a----VK~l~G~~l 130 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKA----VKSLNGKRL 130 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHH----HHhccccee
Confidence 45678888888844333 3667899999999999998877 55999999999999999999 999999887
Q ss_pred cc
Q psy15852 171 NN 172 (661)
Q Consensus 171 ~g 172 (661)
.-
T Consensus 131 dk 132 (698)
T KOG2314|consen 131 DK 132 (698)
T ss_pred cc
Confidence 53
No 163
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.50 E-value=0.004 Score=50.00 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=45.5
Q ss_pred CcEEEEcCCC-cCCH----HHHHHHhhcCC-CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 100 NKMVSHPGIV-HKIT----EELKEHFSKYG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 100 ~~~~~~~~~~-~~te----~~L~~~F~~~G-~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
.++++|.|+| +.+. .-|+.++..|| .|.+|. .+.|+|.|.+++.|++| ...+++..+.|+
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA----~KRmegEdVfG~ 67 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERA----QKRMEGEDVFGN 67 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHH----HHHHTT--SSSS
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHH----HHhhcccccccc
Confidence 3578888888 4444 44778888997 576661 25799999999999999 899999999999
Q ss_pred eehhhhh
Q psy15852 174 KIEAKKA 180 (661)
Q Consensus 174 ~i~v~~~ 180 (661)
+|.|.+.
T Consensus 68 kI~v~~~ 74 (90)
T PF11608_consen 68 KISVSFS 74 (90)
T ss_dssp --EEESS
T ss_pred eEEEEEc
Confidence 9988765
No 164
>KOG2193|consensus
Probab=96.48 E-value=0.00069 Score=69.62 Aligned_cols=75 Identities=15% Similarity=0.358 Sum_probs=58.8
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC--CccCCeEEEEEeccC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK--QKINDKEVDVKKATP 262 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~--~~~~g~~i~V~~a~~ 262 (661)
+.+|++||.+..+..||+.+|...-.-.+-.++ ...||+||...+...|.+|++.++ ..+.|+++.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999764211111111 237899999999999999999984 578999999998887
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 654
No 165
>KOG2314|consensus
Probab=96.46 E-value=0.0042 Score=66.42 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=53.1
Q ss_pred CCeEEEcCCCCC------CCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 593 KNKMVSHPGIVD------KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 593 ~~~l~v~nlp~~------~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
.+.|+|-|.|.- .-..-|..+|+++|+|..+.+|.+.. |.++||.|++|.+..+|..|+.++|.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhccc
Confidence 457888888861 12235778999999999999999998 45999999999999999999997553
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.10 E-value=0.032 Score=47.35 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=52.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEE-eccCCC------CCCcCcEEEEEeCCHHHHHHHHHhCCCccCCe-EE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETE-MPYDKS------KSQRKNFCFITFEHESVVIDLLKNPKQKINDK-EV 255 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~~------~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~-~i 255 (661)
++.|.|=+.|+..+ ..|.+.|++||.|.+.. +.++.. .........|+|+++.+|.+||.+++..+.|. .+
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 45677889998844 56788999999998775 111100 01235688999999999999999999989884 55
Q ss_pred EEEeccC
Q psy15852 256 DVKKATP 262 (661)
Q Consensus 256 ~V~~a~~ 262 (661)
-|.++.+
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777743
No 167
>KOG0115|consensus
Probab=96.09 E-value=0.012 Score=57.30 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
.-|+|+||..-+.-+.|.+-|+.||+|.+..+..|.. +++.|-++|.|...-.|.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHH
Confidence 4599999999999999999999999999999999876 99999999999999999999875
No 168
>KOG1855|consensus
Probab=96.08 E-value=0.0056 Score=63.48 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=54.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeec---CCC--CCc--------ccEEEEEEcCHHHHHHHHHhCC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSD---PNT--GRS--------RGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d---~~t--g~s--------~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
..+|++-|||.|-.-+.|.++|+.+|.|.+|+|+.. +.. |.+ +=+|+|+|+..+.|.+|-+.+.
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 578999999999999999999999999999999965 332 222 3489999999999999988653
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.06 E-value=0.013 Score=58.71 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=60.8
Q ss_pred CeeEecCCCccCCHHHH------HHHHhcCCCeEEEEeccCCCCCC-cCc-E-EEEEeCCHHHHHHHHHhC-CCccCCeE
Q psy15852 185 GKIFVGGLSPEMKDEEI------KAHFAQFGNIIETEMPYDKSKSQ-RKN-F-CFITFEHESVVIDLLKNP-KQKINDKE 254 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L------~~~F~~~G~i~~v~i~~~~~~g~-~~g-~-afV~f~~~~~A~~Al~~~-~~~~~g~~ 254 (661)
+-+||-+||+.+..+++ .++|.+||.|..|.+-+....-. -.+ + .||+|.+.++|.+||.+. +..++||-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999999877762 57999999999988865432111 112 2 499999999999999997 68899999
Q ss_pred EEEEeccCC
Q psy15852 255 VDVKKATPK 263 (661)
Q Consensus 255 i~V~~a~~k 263 (661)
|+..+...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 998775543
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.32 E-value=0.074 Score=45.16 Aligned_cols=67 Identities=18% Similarity=0.337 Sum_probs=46.7
Q ss_pred EEEcCCCcCCHHHHHHHhhcCCCeeEEE-------------EeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 103 VSHPGIVHKITEELKEHFSKYGEIENVT-------------LKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 103 ~~~~~~~~~te~~L~~~F~~~G~I~~v~-------------l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
|.|=..|......|.+.|++||.|.+.. +.. ....-.|.|.++.+|.+| +..||..
T Consensus 9 VtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~------~~NWi~I~Y~~~~~A~rA-----L~~NG~i 77 (100)
T PF05172_consen 9 VTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS------GGNWIHITYDNPLSAQRA-----LQKNGTI 77 (100)
T ss_dssp EEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-C------CTTEEEEEESSHHHHHHH-----HTTTTEE
T ss_pred EEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCC------CCCEEEEECCCHHHHHHH-----HHhCCeE
Confidence 4444455557889999999999998875 222 233889999999999995 7889999
Q ss_pred ecceeeh-hhhh
Q psy15852 170 INNKKIE-AKKA 180 (661)
Q Consensus 170 i~g~~i~-v~~~ 180 (661)
+.|.-+- |.+.
T Consensus 78 ~~g~~mvGV~~~ 89 (100)
T PF05172_consen 78 FSGSLMVGVKPC 89 (100)
T ss_dssp ETTCEEEEEEE-
T ss_pred EcCcEEEEEEEc
Confidence 9885443 4443
No 171
>KOG1855|consensus
Probab=95.25 E-value=0.027 Score=58.59 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeC---CCCCC----------cccEEEEEEeehhhHHHhhHHHHH
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSD---PNTGR----------SRGFAFIVFKDTESLEKASVEDVI 163 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~---~~tg~----------srG~afV~F~~~e~A~~A~~~~~~ 163 (661)
...++|++-|+| +-.-+.|.++|+.+|.|..|+|+.- +.+.+ .+-+|+|+|...+.|.+| ..
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA----~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA----RE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH----HH
Confidence 345666666666 6677999999999999999999864 22211 366899999999999998 55
Q ss_pred HhCCe
Q psy15852 164 AEGNH 168 (661)
Q Consensus 164 ~~~~~ 168 (661)
.++..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 55443
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.19 E-value=0.083 Score=42.60 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=41.5
Q ss_pred cCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 97 EAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 97 ~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
+..+-+|++.-|.++...||.++|+.||.| .|..+.|. .|||.....+.|..|
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v 58 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVV 58 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHH
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHH
Confidence 344668899977799999999999999998 67777663 699999999999997
No 173
>KOG4849|consensus
Probab=95.05 E-value=0.015 Score=58.70 Aligned_cols=77 Identities=12% Similarity=0.246 Sum_probs=60.8
Q ss_pred cCCCcEEEEcCC-CcCCHHHHHHHhhcCCC--eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 97 EAKNKMVSHPGI-VHKITEELKEHFSKYGE--IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 97 ~~~~~~~~~~~~-~~~te~~L~~~F~~~G~--I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
+.++--+|++|+ |.+|++||.+.....|- |.++++..++.+|+|||||+|...+..+.++- +..+-.+.|+|+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~----MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQT----MEILPTKTIHGQ 152 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHH----HHhcccceecCC
Confidence 334445566655 58899999999988885 89999999998999999999999998888885 566777888876
Q ss_pred eehh
Q psy15852 174 KIEA 177 (661)
Q Consensus 174 ~i~v 177 (661)
.-.|
T Consensus 153 ~P~V 156 (498)
T KOG4849|consen 153 SPTV 156 (498)
T ss_pred CCee
Confidence 5433
No 174
>KOG3152|consensus
Probab=95.02 E-value=0.017 Score=56.12 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCC--------CCcccE----EEEEEeehhhHHHhhHHHHHHh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNT--------GRSRGF----AFIVFKDTESLEKASVEDVIAE 165 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~t--------g~srG~----afV~F~~~e~A~~A~~~~~~~~ 165 (661)
+.-+||..++| .+.-.-|+++|+.||.|-.|.|-....+ |.++.. |.|+|.+...|.+. +..|
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i----Ae~L 148 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI----AELL 148 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH----HHHh
Confidence 33467777666 9999999999999999999999877654 333333 56999999999998 8899
Q ss_pred CCeeecceeehh
Q psy15852 166 GNHVINNKKIEA 177 (661)
Q Consensus 166 ~~~~i~g~~i~v 177 (661)
|+..|.|++-..
T Consensus 149 nn~~Iggkk~S~ 160 (278)
T KOG3152|consen 149 NNTPIGGKKKSP 160 (278)
T ss_pred CCCccCCCCCCc
Confidence 999999976543
No 175
>KOG2202|consensus
Probab=94.87 E-value=0.0082 Score=58.50 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=50.3
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 114 EELKEHFS-KYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 114 ~~L~~~F~-~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
++|...|+ +||+|++++|..+.. -+-+|-+||.|..+++|++| +..+|+..+.|++|....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a----~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAA----LEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHH----HHHHcCccccCCcceeee
Confidence 34444454 999999998887643 46789999999999999999 999999999999887643
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.81 E-value=0.07 Score=43.01 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 596 MVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 596 l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
||---.|.+|--.||.++|++||.| .|.-+-|- -|||...+.+.|..|+...
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 4555588899999999999999999 77777664 5999999999999988753
No 177
>KOG3973|consensus
Probab=94.64 E-value=0.22 Score=50.54 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=7.2
Q ss_pred CCCCCCCCCccccc
Q psy15852 299 GYGGILYKPLLFYE 312 (661)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (661)
..|+++|.++..+.
T Consensus 378 ~GGGggyqqp~~~~ 391 (465)
T KOG3973|consen 378 RGGGGGYQQPQQQQ 391 (465)
T ss_pred CCCCCCCcCchhhh
Confidence 34445566655543
No 178
>KOG3152|consensus
Probab=94.28 E-value=0.027 Score=54.78 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=56.5
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC--------CCcCc----EEEEEeCCHHHHHHHHHhC-CCc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK--------SQRKN----FCFITFEHESVVIDLLKNP-KQK 249 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~~~A~~Al~~~-~~~ 249 (661)
+..-||+++||+.+.-..|+++|+.||.|-.|.+.....+ |.+.. -+.|+|.+...|..+...+ +..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999998876544 22222 2789999999998887776 456
Q ss_pred cCCe
Q psy15852 250 INDK 253 (661)
Q Consensus 250 ~~g~ 253 (661)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 6664
No 179
>KOG2591|consensus
Probab=94.24 E-value=0.085 Score=56.71 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHhCCeeecceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhc--CCCeEEEEeccCCCCCCcCcEEEEEeCCHHHH
Q psy15852 162 VIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQ--FGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239 (661)
Q Consensus 162 ~~~~~~~~i~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 239 (661)
+.+.-+..++.+-.+|.. ..+.|-|.++.||..+..|+++.+|+. +-++.+|.+-.+.. -||+|++..||
T Consensus 154 lresp~VqvDekgekVrp-~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DA 225 (684)
T KOG2591|consen 154 LRESPNVQVDEKGEKVRP-NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDA 225 (684)
T ss_pred HhcCCCceeccCcccccc-CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhH
Confidence 455556666666666643 345577889999999999999999976 66888998865432 79999999999
Q ss_pred HHHHHhCC---CccCCeEEEE
Q psy15852 240 IDLLKNPK---QKINDKEVDV 257 (661)
Q Consensus 240 ~~Al~~~~---~~~~g~~i~V 257 (661)
+.|.+.+. ++|.|++|..
T Consensus 226 QqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 226 QQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred HHHHHHHHHHHHhhcCcchhh
Confidence 99998873 5788887743
No 180
>KOG2135|consensus
Probab=94.22 E-value=0.03 Score=59.00 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=57.6
Q ss_pred eEecCCCcc-CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy15852 187 IFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264 (661)
Q Consensus 187 lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~ 264 (661)
|-+.-.|+. -+-++|...|.+||+|..|.+-.. ---|.|+|.+..+|-+|-+..+..|++|.|+|.|.++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 444444444 345799999999999999988543 334899999999998888888889999999999998743
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.75 E-value=0.26 Score=44.57 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=52.2
Q ss_pred ccCCeeEecCCC-----c-cCCH---HHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCC
Q psy15852 182 AKSGKIFVGGLS-----P-EMKD---EEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp-----~-~~te---~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g 252 (661)
|...+|.|.=+. . ...+ .+|.+.|..||++.=+++.-+ .-+|+|.+-++|.+|+...+..++|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 445677776444 1 2222 367788999999888887643 3789999999999999999999999
Q ss_pred eEEEEEeccCCC
Q psy15852 253 KEVDVKKATPKP 264 (661)
Q Consensus 253 ~~i~V~~a~~k~ 264 (661)
+.|.|+...+..
T Consensus 97 ~~l~i~LKtpdW 108 (146)
T PF08952_consen 97 RTLKIRLKTPDW 108 (146)
T ss_dssp EEEEEEE-----
T ss_pred EEEEEEeCCccH
Confidence 999999877654
No 182
>KOG2202|consensus
Probab=93.68 E-value=0.032 Score=54.50 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHHHHh-cCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 199 EEIKAHFA-QFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 199 ~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|...|+ +||+|+.+.|..+.. -.-.|-+||.|...++|++|+..+ +..+.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555555 899999997766543 345788999999999999999998 68999999999887654
No 183
>KOG1996|consensus
Probab=93.30 E-value=0.18 Score=49.95 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=51.4
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCCc-ccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 112 ITEELKEHFSKYGEIENVTLKSDPNTGRS-RGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 112 te~~L~~~F~~~G~I~~v~l~~~~~tg~s-rG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
-++++++-.++||.|..|.|.-.+.--.. .---||+|...++|.+| +..+||..+.|+.+...+.
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA----~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKA----VVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHH----HHhcCCceecceeeeheec
Confidence 45678899999999999988876432211 12379999999999999 9999999999998865443
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.14 E-value=0.19 Score=45.39 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhc
Q psy15852 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKA 182 (661)
Q Consensus 114 ~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~ 182 (661)
.+|.+.|..||+|.-|++.-+ .-.|+|.+-++|.+ ++.+++..+.|+.|.|....+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALa-----als~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALA-----ALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHH-----HHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHH-----HHccCCcEECCEEEEEEeCCc
Confidence 378889999999888888764 47999999999999 589999999999998876554
No 185
>KOG1996|consensus
Probab=93.13 E-value=0.23 Score=49.27 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCeEEEEeccCCCCCCcCc-EEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 198 DEEIKAHFAQFGNIIETEMPYDKSKSQRKN-FCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 198 e~~L~~~F~~~G~i~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
++++++.+.+||.|..|.|...+..-...- -.||+|...++|.+|+-.+ +.+|+||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 357888999999999998876653322222 2699999999999999887 689999998877654
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.08 E-value=0.38 Score=36.80 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=43.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcC---CCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQF---GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
...|+|+++. +++.+||+.+|..| .....|.++-|.. |-|.|.+.+.|.+||.++
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 3579999986 47778999999998 1355677775532 789999999999999764
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.08 E-value=0.46 Score=42.35 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred CeeEecCCCccC----CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 185 GKIFVGGLSPEM----KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 185 ~~lfV~nLp~~~----te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
.+|.|+=|..++ +...+-..++.||+|.+|.+.- +..|.|.|.+..+|-+|+.+......|..+.+.|-
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWq 159 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQ 159 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEEeecc
Confidence 678887555543 3334455668899999998752 44599999999999999999876777888888875
Q ss_pred c
Q psy15852 261 T 261 (661)
Q Consensus 261 ~ 261 (661)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 188
>KOG0921|consensus
Probab=91.72 E-value=1 Score=51.75 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=5.0
Q ss_pred CCcccEEEEEEee
Q psy15852 138 GRSRGFAFIVFKD 150 (661)
Q Consensus 138 g~srG~afV~F~~ 150 (661)
|+.++|+==.|.+
T Consensus 899 g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSD 911 (1282)
T ss_pred cchhhcccccccc
Confidence 3334444333333
No 189
>KOG0921|consensus
Probab=90.71 E-value=2 Score=49.68 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy15852 300 YGGILY 305 (661)
Q Consensus 300 ~~~~~~ 305 (661)
||+++|
T Consensus 1203 ygsGGY 1208 (1282)
T KOG0921|consen 1203 YGSGGY 1208 (1282)
T ss_pred cCCCCC
Confidence 333333
No 190
>KOG2135|consensus
Probab=89.98 E-value=0.13 Score=54.53 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccCCeeEec
Q psy15852 111 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKSGKIFVG 190 (661)
Q Consensus 111 ~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~~~lfV~ 190 (661)
-+-++|..+|.+||+|..|.|-.... .|.|+|.+..+|-.| ....+..|+++.|++.|..+.. +.
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a-----~~s~~avlnnr~iKl~whnps~----~t 449 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEA-----YASHGAVLNNRFIKLFWHNPSP----VT 449 (526)
T ss_pred chHhhhhhhhhhcCccccccccCchh------hheeeeeccccccch-----hccccceecCceeEEEEecCCc----cc
Confidence 36789999999999999999877533 699999999999884 6788999999999999988755 66
Q ss_pred CCCccCC
Q psy15852 191 GLSPEMK 197 (661)
Q Consensus 191 nLp~~~t 197 (661)
|+|..-|
T Consensus 450 n~pav~t 456 (526)
T KOG2135|consen 450 NIPAVPT 456 (526)
T ss_pred CcccCcc
Confidence 7765433
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.41 E-value=0.48 Score=44.95 Aligned_cols=63 Identities=21% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEeecCCC-CC-cccEEEEEEcCHHHHHHHHHhC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSK-YGEI---ENVTLKSDPNT-GR-SRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~-~G~I---~~v~i~~d~~t-g~-s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
..+|.||+||+..||+++++.+++ ++.- .++.-.....+ .. .-.-|+|.|.+.+++..-+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 569999999999999999999988 7776 45542221111 11 1235999999999977766653
No 192
>KOG4285|consensus
Probab=88.79 E-value=0.99 Score=45.28 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=58.1
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCC-eEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIND-KEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g-~~i~V~~a~~k 263 (661)
.-|-|-++|+.-. ..|..+|++||+|.+.... ..-.+-+|.|.+..+|+|||..++..|+| -.|-|+.+..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 4566668877644 4577899999999877653 23568899999999999999999988887 45778888776
Q ss_pred CCC
Q psy15852 264 PEP 266 (661)
Q Consensus 264 ~~~ 266 (661)
...
T Consensus 271 svi 273 (350)
T KOG4285|consen 271 SVI 273 (350)
T ss_pred HHh
Confidence 543
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.33 E-value=1.9 Score=33.10 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=39.1
Q ss_pred EEEcCCCcCCHHHHHHHhhcC----CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 103 VSHPGIVHKITEELKEHFSKY----GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 103 ~~~~~~~~~te~~L~~~F~~~----G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
+.+....+++.++|+.+|..| + ...|.++-|. .|=|.|.+.+.|.+|
T Consensus 8 vhirGvd~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~A 58 (62)
T PF10309_consen 8 VHIRGVDELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARA 58 (62)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHH
Confidence 444456789999999999999 5 4588899875 489999999999998
No 194
>KOG2068|consensus
Probab=88.07 E-value=0.21 Score=50.93 Aligned_cols=85 Identities=16% Similarity=0.300 Sum_probs=61.4
Q ss_pred EEEcCCCc-CCHHHHH--HHhhcCCCeeEEEEeeCCC----CCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 103 VSHPGIVH-KITEELK--EHFSKYGEIENVTLKSDPN----TGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 103 ~~~~~~~~-~te~~L~--~~F~~~G~I~~v~l~~~~~----tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
.++++.+. ..+..|+ +.|.+||.|..|.+.++.. .+.+- -+||.|...++|..| +...++..+.|+.+
T Consensus 81 yvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rc----i~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 81 YVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRC----IDDVDGFVDDGRAL 155 (327)
T ss_pred hhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhH----HHHhhhHHhhhhhh
Confidence 34444444 4555554 6899999999999988652 11122 379999999999999 99999999999998
Q ss_pred hhhhhhccCCeeEecCC
Q psy15852 176 EAKKAKAKSGKIFVGGL 192 (661)
Q Consensus 176 ~v~~~~~~~~~lfV~nL 192 (661)
+......+-+..|++|.
T Consensus 156 ka~~gttkycs~~l~~~ 172 (327)
T KOG2068|consen 156 KASLGTTKYCSFYLRND 172 (327)
T ss_pred HHhhCCCcchhHHhhhh
Confidence 87777666555555443
No 195
>KOG2591|consensus
Probab=87.19 E-value=1.8 Score=47.06 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhc--CCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh---hHHHHHHhCCeeec
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSK--YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA---SVEDVIAEGNHVIN 171 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~--~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A---~~~~~~~~~~~~i~ 171 (661)
.++++++..-++ .+-+|+++.||+. |-++.+|..-.+.+ =||+|++..||+.| |.+.+.++.++.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 367788888888 6678889999965 77899998877543 79999999999998 23334444444443
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.78 E-value=1.4 Score=39.31 Aligned_cols=55 Identities=31% Similarity=0.324 Sum_probs=42.8
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 593 KNKMVSHP----GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 593 ~~~l~v~n----lp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
-.+|.|+= +.+..+-+.+.+..+.||+|.+|.+. |+. -|.|.|.+...|=+|+..
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSA 144 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHh
Confidence 45677754 44444445677888999999999988 444 699999999999999885
No 197
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.76 E-value=1.7 Score=35.97 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHh
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHF 614 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F 614 (661)
.+.++|.|.|+|...+|++|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 346899999999999999999854
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.07 E-value=1.8 Score=41.11 Aligned_cols=72 Identities=22% Similarity=0.106 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhc-CCCe---eEEEEeeCC-CCC-CcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSK-YGEI---ENVTLKSDP-NTG-RSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~-~G~I---~~v~l~~~~-~tg-~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
..++||+.|||.+||+++.+.++. ++.- ..+.-.... ... ..-.-|||.|.+.+++..- +..++++.+.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F----~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEF----RDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHH----HHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHH----HHhcCCcEEEC
Confidence 358899999999999999998877 6665 233311111 111 1223499999999998886 77888988755
Q ss_pred ee
Q psy15852 173 KK 174 (661)
Q Consensus 173 ~~ 174 (661)
..
T Consensus 83 ~k 84 (176)
T PF03467_consen 83 SK 84 (176)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.70 E-value=1.2 Score=36.86 Aligned_cols=57 Identities=16% Similarity=0.430 Sum_probs=40.6
Q ss_pred EEEEEeehhhHHHhhHHHHHHhCCeee--cceeehhhhh--------------hccCCeeEecCCCccCCHHHHHHHH
Q psy15852 144 AFIVFKDTESLEKASVEDVIAEGNHVI--NNKKIEAKKA--------------KAKSGKIFVGGLSPEMKDEEIKAHF 205 (661)
Q Consensus 144 afV~F~~~e~A~~A~~~~~~~~~~~~i--~g~~i~v~~~--------------~~~~~~lfV~nLp~~~te~~L~~~F 205 (661)
|.|+|.+++-|++ +.....+.+ .+..+.|... ....++|.|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~-----i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQR-----ILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHH-----HHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999 666655544 4444433221 1223789999999999999998653
No 200
>KOG2416|consensus
Probab=81.46 E-value=0.64 Score=50.70 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=45.2
Q ss_pred cEEEEcCCC-cCCHHHHHHHhh-cCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 101 KMVSHPGIV-HKITEELKEHFS-KYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~~~F~-~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
.+|++.|+- -+|.-+|++++. ..|.|++. +| |+ -|-.|||.|.+.++|.+. ..+|++..
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~at----r~AlhnV~ 505 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAAT----REALHNVQ 505 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHH----HHHHhccc
Confidence 467777765 899999999998 66778777 33 22 234799999999999996 77777754
No 201
>KOG2068|consensus
Probab=80.73 E-value=0.86 Score=46.64 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=60.0
Q ss_pred CeeEecCCCccCCHHHH---HHHHhcCCCeEEEEeccCCCCC-CcC--cEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 185 GKIFVGGLSPEMKDEEI---KAHFAQFGNIIETEMPYDKSKS-QRK--NFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L---~~~F~~~G~i~~v~i~~~~~~g-~~~--g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
.-+||-+|+..+..+++ .+.|.+||.|..|.+..+.... ..- .-++|+|...++|..||... +..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45778888887665554 3589999999999988766211 111 12799999999999999986 67888888777
Q ss_pred EeccCCCC
Q psy15852 258 KKATPKPE 265 (661)
Q Consensus 258 ~~a~~k~~ 265 (661)
.+...+-.
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 77666543
No 202
>KOG2416|consensus
Probab=80.32 E-value=1.3 Score=48.54 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=56.1
Q ss_pred CeeEecCCCccCCHHHHHHHHhc-CCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCc---cCCeEEEEEe
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQ-FGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQK---INDKEVDVKK 259 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~---~~g~~i~V~~ 259 (661)
+-|+|.||-.-.|.-+|+.++.+ .|.|++.+|- +-+..|||.|.+.++|.....+| |.. -+.+.|.+.|
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 67999999999999999999994 6677776442 23566999999999999998887 432 3557777777
Q ss_pred ccC
Q psy15852 260 ATP 262 (661)
Q Consensus 260 a~~ 262 (661)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 654
No 203
>KOG4285|consensus
Probab=78.70 E-value=6.7 Score=39.56 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=47.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
+.-|-|-.++--.-.-|..+|++||+|.+.....+- -+-+|.|.+.-+|++| +..|+..|.|.
T Consensus 197 D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KA-----Lskng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKA-----LSKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchhHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHh-----hhhcCeeeccc
Confidence 444445555555556788999999999877665432 2889999999999995 77888888763
No 204
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.63 E-value=6.9 Score=35.83 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred cCCHHHHHHHhhc-CCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccC----
Q psy15852 110 HKITEELKEHFSK-YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKS---- 184 (661)
Q Consensus 110 ~~te~~L~~~F~~-~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~---- 184 (661)
..+-..|...+.+ ++....+.+..- ..++..++|.+++++.+ ++......+.+..+.+....+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~-----vl~~~p~~~~~~~~~l~~W~~~~~~~~ 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQR-----VLKGGPWNFNGHFLILQRWSPDFNPSE 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeE-----EEecccccccccchhhhhhcccccccc
Confidence 4556666665544 343334444331 23589999999999999 56667777888888777766432
Q ss_pred -------CeeEecCCCcc-CCHHHHHHHHhcCCCeEEEEecc
Q psy15852 185 -------GKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 185 -------~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
--|.|.|||.. .+++-|+.+-+.+|++..+....
T Consensus 98 ~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 98 VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 23667799998 77788899999999999887654
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=77.59 E-value=13 Score=32.24 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCc-CCHHHHHHHhhcCCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 99 KNKMVSHPGIVH-KITEELKEHFSKYGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 99 ~~~~~~~~~~~~-~te~~L~~~F~~~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
...+++.-.+|. ++-++|..+.+.+-. |..++|+++.. .++=.+.++|.+.++|..- ....||+.+.-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~F----y~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEF----YEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHH----HHHhCCCccCC
Confidence 345666666774 455567666666655 88899998743 3565789999999999997 77888887753
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.44 E-value=4.7 Score=38.45 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=43.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhC--Ceeecceeehhhhh
Q psy15852 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG--NHVINNKKIEAKKA 180 (661)
Q Consensus 112 te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~--~~~i~g~~i~v~~~ 180 (661)
..+.|+++|..|+.+.+..+.+.- +=..|.|.+.++|.+| ...++ +..+.|..+++-++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~----r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRA----RQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHH----HHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHH----HHHhcccccccCCCceEEEEc
Confidence 568899999999998888777642 2589999999999998 77778 88888888776555
No 207
>KOG3973|consensus
Probab=71.02 E-value=4.6 Score=41.32 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=7.5
Q ss_pred ceEEeCCCCCCCCc
Q psy15852 31 RKLFCPLSSYLELD 44 (661)
Q Consensus 31 r~lfVg~l~~~~te 44 (661)
+.|-.+-.|...++
T Consensus 150 ~~L~~~k~p~Nin~ 163 (465)
T KOG3973|consen 150 RTLNFPKQPGNINE 163 (465)
T ss_pred HHcCCCCCCCCchH
Confidence 44555555555555
No 208
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=70.92 E-value=23 Score=40.96 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=28.1
Q ss_pred CcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 226 KNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 226 ~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
..|.||+... +.|...+..+ +..+.|++|.|..+...
T Consensus 526 ~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 526 ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 4578888764 4577788877 57899999999987543
No 209
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.01 E-value=4.6 Score=35.43 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=31.0
Q ss_pred eEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q psy15852 595 KMVSHPGIVDK---------ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648 (661)
Q Consensus 595 ~l~v~nlp~~~---------te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A 648 (661)
.++|.|+|.+. +-++|++.|+.|.++ .|+.+.++. -++|+++|.|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHH
Confidence 46777776644 347899999999888 577887764 5689999999876543
No 210
>KOG4574|consensus
Probab=65.41 E-value=4.1 Score=46.58 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=59.8
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CC--ccCCeEEEEEeccC
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQ--KINDKEVDVKKATP 262 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~--~~~g~~i~V~~a~~ 262 (661)
+..+.|.+-..+-..|..+|++||.|.+++..++.. .|.|+|.+.+.|..|+.++ ++ ..-|.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344556666777889999999999999999988743 4999999999999999997 43 46778888988877
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
-+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 654
No 211
>KOG4574|consensus
Probab=63.11 E-value=4.5 Score=46.32 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=54.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
....+..+-|++-..+-.-|-.+|+.||.|.++...+|.. -|.|+|.+.+.|..|.+.++.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQG 356 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcC
Confidence 4456778888899999999999999999999999999877 899999999999999997763
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=61.04 E-value=21 Score=34.03 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=41.8
Q ss_pred CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC---CccCCeEEEEEeccCC
Q psy15852 197 KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK---QKINDKEVDVKKATPK 263 (661)
Q Consensus 197 te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~---~~~~g~~i~V~~a~~k 263 (661)
..+.|+++|..|+.+....+++.- +=..|.|.+.++|.+|...+. ..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999988777665432 227899999999999998865 5789999999988544
No 213
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=59.80 E-value=40 Score=29.26 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=40.4
Q ss_pred ecCCCccCCHHHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 189 VGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 189 V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
+-..|..++-++|..+.+.+- .|..++|+++. ..++-.+.++|.+.++|..-....
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHh
Confidence 334555566677776666654 67788888874 235667999999999999988874
No 214
>KOG2253|consensus
Probab=59.24 E-value=4.8 Score=44.89 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=60.3
Q ss_pred eeecCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 94 YIMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
...++..++||++++..+..+-++.+...+|-|.+++... |+|..|..+.-+.+| +..++...+++.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra----~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRA----SRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHH----HHHhcccCCCcc
Confidence 3555677888888888999999999999999998876654 899999999999998 788888888777
Q ss_pred eehhhh
Q psy15852 174 KIEAKK 179 (661)
Q Consensus 174 ~i~v~~ 179 (661)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 776544
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=55.69 E-value=49 Score=26.25 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhhcCCC-----eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 110 HKITEELKEHFSKYGE-----IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 110 ~~te~~L~~~F~~~G~-----I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
.++..+|..++..-+. |-.|+|..+ |+||+-... .|..+ +..+++..+.|+++.|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v----~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKV----LEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHH----HHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHH----HHHhcCCCCCCeeEEEEEC
Confidence 6788899988877643 777888764 889876554 55555 8889999999999988653
No 216
>KOG2253|consensus
Probab=53.41 E-value=16 Score=41.07 Aligned_cols=59 Identities=15% Similarity=0.004 Sum_probs=52.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
....++||+|+-..+..+=++.+...+|-|.+++... |||..|..+..+..|+..++-+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhccc
Confidence 3456899999999999999999999999999987774 9999999999999999876654
No 217
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.25 E-value=51 Score=27.07 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=47.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSK-YG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
.+-|+..+..+++..+|++.++. || .|.+|+...-+. +.- -|||++..-++|.....+.-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHHhhc
Confidence 35788888999999999999976 56 578888887653 433 59999999999988766543
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=48.91 E-value=71 Score=25.29 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHhcCC-----CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 195 EMKDEEIKAHFAQFG-----NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 195 ~~te~~L~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
.++..+|..++...+ .|-.|.+. ..|+||+-.. +.|..++..+ +..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477788888887764 45567774 4578998875 4678888886 57899999999875
No 219
>KOG2891|consensus
Probab=45.48 E-value=18 Score=36.01 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=34.3
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEEee-----cCCCCCcccEEE
Q psy15852 592 AKNKMVSHPGIVD------------KITEELKEHFSKYGEIENVTLKS-----DPNTGRSRGFAF 639 (661)
Q Consensus 592 ~~~~l~v~nlp~~------------~te~dL~~~F~~~G~I~~v~i~~-----d~~tg~s~G~aF 639 (661)
...+|+.-++|-. -+|+.|+..|..||.|..|.||. ..-||+..|.-|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQF 212 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcccccee
Confidence 3456777777742 25678999999999999999985 223577655433
No 220
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.90 E-value=47 Score=26.04 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEeccCCC
Q psy15852 199 EEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKP 264 (661)
Q Consensus 199 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~~k~ 264 (661)
++|++.|...| +|..+.-+..+.++..-..-||+.+...+..+ ..+ ..+.++.|.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 46777788878 88889888877667777788888876544222 223 46888999998876543
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=44.89 E-value=96 Score=24.18 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=41.9
Q ss_pred cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 110 HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 110 ~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
.++-++|+..+.+|+-. +|..|+. | =||.|.+.++|+++ ....++..+....+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t-----G-fYIvF~~~~Ea~rC----~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT-----G-FYIVFNDSKEAERC----FRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC-----E-EEEEECChHHHHHH----HHhcCCCEEEEEEEE
Confidence 67899999999999753 3444432 3 48999999999998 788888887766654
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=43.37 E-value=56 Score=25.47 Aligned_cols=48 Identities=27% Similarity=0.420 Sum_probs=35.8
Q ss_pred CCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 601 GIV-DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 601 lp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
+|. .++-+||+..+..|+-. + |..|+ .|| ||.|.+.+||+++....++
T Consensus 7 vp~~~~~v~d~K~~Lr~y~~~-~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 7 VPVHGVTVEDFKKRLRKYRWD-R--IRDDR-----TGF-YIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CCCCCccHHHHHHHHhcCCcc-e--EEecC-----CEE-EEEECChHHHHHHHHhcCC
Confidence 344 77889999999999644 3 44443 233 8999999999999987554
No 223
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=42.61 E-value=8.2 Score=43.20 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.7
Q ss_pred HHhhcCC
Q psy15852 118 EHFSKYG 124 (661)
Q Consensus 118 ~~F~~~G 124 (661)
++|..|=
T Consensus 313 ~~L~~ym 319 (556)
T PF05918_consen 313 QLLKKYM 319 (556)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 3333443
No 224
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=42.49 E-value=1.3e+02 Score=34.83 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=23.0
Q ss_pred ceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCC
Q psy15852 461 NFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKAT 495 (661)
Q Consensus 461 g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~ 495 (661)
.|.||+-.... |...+ ...+..+.|+.|.+..+.
T Consensus 527 ~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcChhh-HHHHHHHhccccccCCceEEEECC
Confidence 57788875543 44444 344567899999998775
No 225
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.89 E-value=56 Score=25.61 Aligned_cols=63 Identities=8% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-CccCCeEEEEEeccCCC
Q psy15852 199 EEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKP 264 (661)
Q Consensus 199 ~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~~~~g~~i~V~~a~~k~ 264 (661)
++|++-|.++| ++..+.-+..++++.+...-+|+.....+-.. -+. +.+++++|.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46788888888 88999999888877777778888765432111 122 56889999998765443
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=39.10 E-value=31 Score=26.36 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.0
Q ss_pred HHHHHHHhhcCCCeeEEEEee
Q psy15852 607 TEELKEHFSKYGEIENVTLKS 627 (661)
Q Consensus 607 e~dL~~~F~~~G~I~~v~i~~ 627 (661)
.++||++|+..|+|.-+.|-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 368999999999997666653
No 227
>KOG0804|consensus
Probab=35.30 E-value=86 Score=33.82 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=52.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
..+.+...|..++-.||..+...+=+ |.++++++|.. -++=...|.|.+.++|..- ...+||..+..
T Consensus 75 ~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~F----y~efNGk~Fn~ 142 (493)
T KOG0804|consen 75 TMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTF----YEEFNGKQFNS 142 (493)
T ss_pred cEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHH----HHHcCCCcCCC
Confidence 34555555559999999999887755 99999999743 2444689999999999997 78899987754
No 228
>KOG3424|consensus
Probab=33.19 E-value=1.2e+02 Score=26.30 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCCcCCHHHHHHHhhcCCC-----eeEEEEeeCCCCCCcccEEEEEEeehhhHHH
Q psy15852 107 GIVHKITEELKEHFSKYGE-----IENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156 (661)
Q Consensus 107 ~~~~~te~~L~~~F~~~G~-----I~~v~l~~~~~tg~srG~afV~F~~~e~A~~ 156 (661)
+-+.+..+||++-+++.=. |.-.-+...--.|++.|||.| |.+.+.|.+
T Consensus 31 G~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 31 GKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 3358899999987765322 222223333346789999988 889888887
No 229
>KOG0804|consensus
Probab=32.74 E-value=89 Score=33.71 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN 251 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~ 251 (661)
...|+|=.+|..++-.||-.|+..+- .|.++++++|.. ..+=.++|+|.+.++|..-.+.. |..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56788889999999999999998765 788999999642 23445899999999999998875 44443
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.99 E-value=61 Score=32.94 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=43.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCC-------CCCcccEEEEEEeehhhHHHh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPN-------TGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~-------tg~srG~afV~F~~~e~A~~A 157 (661)
+.+++-+.-.+++-..+...|-+||+|++|.|+.+.. ..+..-...+.|-+.+.+-.-
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 3445555556888999999999999999999998751 123345789999999887654
No 231
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.75 E-value=1.7e+02 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=45.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 595 KMVSHPGIVDKITEELKEHFSK-YG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
+-|+..+..+++..||++.++. || .|.+|+.+.-+. +.- -|||++..-++|...-.+.-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHhhc
Confidence 5788889999999999988876 55 578888776553 433 59999999998887765543
No 232
>KOG4483|consensus
Probab=30.71 E-value=78 Score=33.46 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=43.2
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCC-eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGN-IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
.-|-|.++|.....+||...|+.|+. -.+|+++-|. .||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 35788899999999999999999973 3455555432 489999999999999865
No 233
>KOG4213|consensus
Probab=28.87 E-value=57 Score=30.61 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=45.1
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHh
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTG--RSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg--~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
...+++|.+ |.+..-++|.+|-+ |.+..|.+-+..+ + .-+|--||+|.+.+.|.+.+..
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhh
Confidence 345667777 66666778888877 8998888876543 3 5679999999999999986664
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.48 E-value=2e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCcCCHHHHHHHhhc-CCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 108 IVHKITEELKEHFSK-YGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 108 ~~~~te~~L~~~F~~-~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
.+.++..+|++.++. ||. |.+|....-+. + .-=|||.+....+|...
T Consensus 29 ~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~v 77 (84)
T PRK14548 29 DRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEI 77 (84)
T ss_pred CCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHH
Confidence 346899999999977 674 88888877542 2 23599999999999884
No 235
>PTZ00146 fibrillarin; Provisional
Probab=27.66 E-value=89 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=7.7
Q ss_pred HHhhc--CCCeeEEEEe
Q psy15852 612 EHFSK--YGEIENVTLK 626 (661)
Q Consensus 612 ~~F~~--~G~I~~v~i~ 626 (661)
+.+.. |-.+..+.+.
T Consensus 257 ~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 257 QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHHHcCCceEEEEecC
Confidence 55554 5455555554
No 236
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=26.47 E-value=93 Score=31.69 Aligned_cols=78 Identities=12% Similarity=0.290 Sum_probs=58.2
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCC-------CCCcCcEEEEEeCCHHHHHHH----HHhC---CCc
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS-------KSQRKNFCFITFEHESVVIDL----LKNP---KQK 249 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-------~g~~~g~afV~f~~~~~A~~A----l~~~---~~~ 249 (661)
.+.|...|+..+++-..+-..|-+||+|++|.++.+.. ..+......+.|-+.+.+..- ++.+ ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999999999999999999987651 123345678999998876543 2333 456
Q ss_pred cCCeEEEEEecc
Q psy15852 250 INDKEVDVKKAT 261 (661)
Q Consensus 250 ~~g~~i~V~~a~ 261 (661)
++...|.+.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 777788777655
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=25.70 E-value=95 Score=27.20 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHH
Q psy15852 111 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156 (661)
Q Consensus 111 ~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~ 156 (661)
++.++|.+.|+.|.++. |+.+.++. -++|++.|+|...-..-+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHH
Confidence 45688999999999974 66666553 588999999998766544
No 238
>KOG4008|consensus
Probab=25.66 E-value=33 Score=33.53 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred eecceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEe
Q psy15852 169 VINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216 (661)
Q Consensus 169 ~i~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i 216 (661)
.++|....-..-..+..+||+-|+|..++++.|..+.++.|-+..+.+
T Consensus 25 Rlhg~f~ke~s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 25 RLHGMFAKEHSNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred hhhhhhhccccccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 344433333333455689999999999999999999999996665544
No 239
>KOG3875|consensus
Probab=24.89 E-value=79 Score=32.37 Aligned_cols=10 Identities=50% Similarity=1.404 Sum_probs=5.1
Q ss_pred CCCCCCCCCC
Q psy15852 529 GYGGGYGELD 538 (661)
Q Consensus 529 ~~g~~~~~~~ 538 (661)
++|+||...+
T Consensus 88 ~fGgGyN~~~ 97 (362)
T KOG3875|consen 88 GFGGGYNRFG 97 (362)
T ss_pred ccCccccccc
Confidence 3555555544
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.47 E-value=2.4e+02 Score=22.10 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=37.4
Q ss_pred EEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCC
Q psy15852 143 FAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFG 209 (661)
Q Consensus 143 ~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G 209 (661)
+.+|.|.+..+|.+| -..+...-+..+-+.+-......|-+-++ ++. -..+.+.++++..+
T Consensus 3 ~~~i~F~st~~a~~~----ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~~-~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 3 YYLITFPSTHDAMKA----EKLLKKNGIPVRLIPTPREISAGCGLALR-FEP-EDLEKIKEILEENG 63 (73)
T ss_pred eEEEEECCHHHHHHH----HHHHHHCCCcEEEeCCChhccCCCCEEEE-ECh-hhHHHHHHHHHHCC
Confidence 789999999999997 44444444455555444444444555443 222 45566777777765
No 241
>KOG2318|consensus
Probab=24.44 E-value=1.8e+02 Score=32.50 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred cCCCcEEEEcCCC-cCCHHHHHHHhhcC----CCeeEEEEeeCCCCCCccc-----------------------------
Q psy15852 97 EAKNKMVSHPGIV-HKITEELKEHFSKY----GEIENVTLKSDPNTGRSRG----------------------------- 142 (661)
Q Consensus 97 ~~~~~~~~~~~~~-~~te~~L~~~F~~~----G~I~~v~l~~~~~tg~srG----------------------------- 142 (661)
..+++|-|+++-| .+.-++|.-+|+.| |.|.+|.|..... |+.|=
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-GkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hHHHhhhhcccCChhhhccccccCcccccchhhh
Q ss_pred -------------------EEEEEEeehhhHHHhhHHHHHHhCCeeec
Q psy15852 143 -------------------FAFIVFKDTESLEKASVEDVIAEGNHVIN 171 (661)
Q Consensus 143 -------------------~afV~F~~~e~A~~A~~~~~~~~~~~~i~ 171 (661)
||.|+|.+.+.|.+. ...++|..+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~v----Ye~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAV----YEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHH----HHhcCcceec
No 242
>KOG2891|consensus
Probab=23.70 E-value=1.8e+02 Score=29.13 Aligned_cols=34 Identities=21% Similarity=0.569 Sum_probs=27.5
Q ss_pred CeeEecCCCcc------------CCHHHHHHHHhcCCCeEEEEecc
Q psy15852 185 GKIFVGGLSPE------------MKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 185 ~~lfV~nLp~~------------~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
.+|++.+||-. -+++-|+..|..||.|..|.|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 57888888742 35678999999999999998874
No 243
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.60 E-value=4.5e+02 Score=28.94 Aligned_cols=8 Identities=0% Similarity=-0.159 Sum_probs=3.6
Q ss_pred CcEEEEEe
Q psy15852 226 KNFCFITF 233 (661)
Q Consensus 226 ~g~afV~f 233 (661)
.|.|++-+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 45554433
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.70 E-value=4.1e+02 Score=21.39 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=36.1
Q ss_pred CCCcCCHHHHHHHhhc-CCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 107 GIVHKITEELKEHFSK-YGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 107 ~~~~~te~~L~~~F~~-~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
-.+.++..+|+..++. ||. |.+|....-+. ..-=|||.+...++|...
T Consensus 21 V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 3457899999999877 564 88887776542 222599999999999884
No 245
>PTZ00146 fibrillarin; Provisional
Probab=22.66 E-value=1.2e+02 Score=31.35 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=8.0
Q ss_pred EEEEEEcCHHHHHHHHH
Q psy15852 637 FAFIVFKDTESLEKASV 653 (661)
Q Consensus 637 ~aFV~F~~~e~A~~A~~ 653 (661)
+.|+....++.+..++.
T Consensus 205 vV~~Dva~pdq~~il~~ 221 (293)
T PTZ00146 205 VIFADVAQPDQARIVAL 221 (293)
T ss_pred EEEEeCCCcchHHHHHH
Confidence 44444444555544443
No 246
>KOG4410|consensus
Probab=21.99 E-value=98 Score=31.19 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=35.3
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCe-EEEEeccCCCCCCcCcEEEEEeCCH
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNI-IETEMPYDKSKSQRKNFCFITFEHE 236 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~ 236 (661)
.-|++.|||.++.-.||+..+.+-+.+ .++.+ .-..|-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 459999999999999999999887733 34444 22467799999764
No 247
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.69 E-value=2.5e+02 Score=23.87 Aligned_cols=47 Identities=15% Similarity=0.369 Sum_probs=29.7
Q ss_pred CcCCHHHHHHHh-hcCCCeeEEEEeeCCC----CCCcccEEEEEEeehhhHHH
Q psy15852 109 VHKITEELKEHF-SKYGEIENVTLKSDPN----TGRSRGFAFIVFKDTESLEK 156 (661)
Q Consensus 109 ~~~te~~L~~~F-~~~G~I~~v~l~~~~~----tg~srG~afV~F~~~e~A~~ 156 (661)
+..+..+|++.+ ..|+.=.+..++..-. .|++.|||.| |.+.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 366778887766 4455422333333222 3578999988 888888887
No 248
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.91 E-value=1.1e+02 Score=23.89 Aligned_cols=61 Identities=15% Similarity=0.306 Sum_probs=43.3
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 114 EELKEHFSKYG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 114 ~~L~~~F~~~G-~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
++|.+-|...| +|..|.-+..+.++...-.-||+.+...+... .++-..+.+..+.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~-------i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE-------IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc-------eeehHhhCCeEEEEecCC
Confidence 57888888889 48888888887667777788888877766444 234445666667666554
No 249
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.59 E-value=2.7e+02 Score=25.44 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSK-YG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
.++.|+.-+...++..+|++.++. |+ .|..|..+.-+. |.- -|||.+..-.+|.....+
T Consensus 81 ~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 346788889999999999998876 65 577888877654 433 599999888887654443
Done!