Query psy15852
Match_columns 661
No_of_seqs 380 out of 4357
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:02:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.5E-35 2.2E-39 301.7 23.0 248 99-498 41-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1E-34 3.5E-39 299.0 23.5 243 98-499 21-266 (284)
3 3smz_A Protein raver-1, ribonu 100.0 4.2E-34 1.4E-38 294.4 23.9 228 181-658 19-249 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-34 8.7E-39 297.3 21.0 234 182-658 39-276 (292)
5 1l3k_A Heterogeneous nuclear r 100.0 3.7E-30 1.3E-34 249.5 18.6 164 99-267 13-187 (196)
6 4f02_A Polyadenylate-binding p 100.0 2.7E-29 9.3E-34 247.0 17.2 162 98-265 14-183 (213)
7 2cjk_A Nuclear polyadenylated 100.0 2.6E-29 8.8E-34 237.0 13.7 159 100-264 4-167 (167)
8 2qfj_A FBP-interacting repress 100.0 2.1E-28 7E-33 241.0 17.5 164 99-266 28-208 (216)
9 3md3_A Nuclear and cytoplasmic 100.0 2.6E-28 8.9E-33 229.6 17.1 157 101-262 2-166 (166)
10 1b7f_A Protein (SXL-lethal pro 100.0 2.4E-28 8.3E-33 230.5 16.5 157 100-260 4-168 (168)
11 1fxl_A Paraneoplastic encephal 100.0 4.3E-28 1.5E-32 228.4 17.8 157 100-260 3-167 (167)
12 3nmr_A Cugbp ELAV-like family 99.9 7E-27 2.4E-31 221.9 15.9 157 100-261 4-175 (175)
13 1l3k_A Heterogeneous nuclear r 99.9 2.5E-26 8.6E-31 222.5 17.0 178 183-503 12-189 (196)
14 2g4b_A Splicing factor U2AF 65 99.9 5.1E-26 1.7E-30 215.5 15.3 152 99-261 4-172 (172)
15 1fje_B Nucleolin RBD12, protei 99.9 1.6E-26 5.4E-31 219.8 9.2 155 99-264 13-175 (175)
16 1fxl_A Paraneoplastic encephal 99.9 4.4E-25 1.5E-29 207.7 18.8 79 184-262 2-81 (167)
17 2yh0_A Splicing factor U2AF 65 99.9 1.7E-25 6E-30 216.9 15.7 156 99-265 4-196 (198)
18 3tyt_A Heterogeneous nuclear r 99.9 3.6E-25 1.2E-29 215.6 14.3 150 100-260 5-204 (205)
19 2cjk_A Nuclear polyadenylated 99.9 1.6E-25 5.6E-30 210.9 11.4 164 184-497 3-166 (167)
20 3pgw_A U1-A; protein-RNA compl 99.9 1.9E-24 6.5E-29 221.9 18.3 152 98-261 8-281 (282)
21 3nmr_A Cugbp ELAV-like family 99.9 2.1E-24 7.2E-29 204.7 16.3 64 593-657 95-158 (175)
22 2adc_A Polypyrimidine tract-bi 99.9 1.6E-24 5.4E-29 215.4 16.0 152 98-263 33-228 (229)
23 4f02_A Polyadenylate-binding p 99.9 1.6E-24 5.5E-29 212.9 13.3 168 183-499 14-183 (213)
24 1qm9_A Polypyrimidine tract-bi 99.9 1.6E-24 5.3E-29 210.4 11.8 150 100-263 4-197 (198)
25 1b7f_A Protein (SXL-lethal pro 99.9 7E-24 2.4E-28 199.8 15.8 162 184-494 3-168 (168)
26 3sde_A Paraspeckle component 1 99.9 4.4E-24 1.5E-28 216.6 15.2 154 100-265 23-181 (261)
27 3md3_A Nuclear and cytoplasmic 99.9 8.3E-24 2.8E-28 198.7 15.1 164 185-496 1-166 (166)
28 3tyt_A Heterogeneous nuclear r 99.9 2.4E-23 8.2E-28 202.7 17.4 76 183-263 3-80 (205)
29 2qfj_A FBP-interacting repress 99.9 1.6E-23 5.4E-28 206.0 15.9 181 182-500 26-208 (216)
30 3pgw_A U1-A; protein-RNA compl 99.9 3.1E-22 1.1E-26 205.4 25.0 80 182-264 7-91 (282)
31 3sde_A Paraspeckle component 1 99.9 3E-22 1E-26 203.1 15.2 61 594-655 97-157 (261)
32 2g4b_A Splicing factor U2AF 65 99.9 5.3E-22 1.8E-26 187.7 14.8 158 183-495 3-172 (172)
33 2adc_A Polypyrimidine tract-bi 99.9 7.9E-21 2.7E-25 188.7 20.5 79 181-264 31-111 (229)
34 1fje_B Nucleolin RBD12, protei 99.9 2.2E-22 7.4E-27 191.1 8.5 164 181-497 10-174 (175)
35 2yh0_A Splicing factor U2AF 65 99.9 4.4E-21 1.5E-25 185.7 17.7 182 183-499 3-196 (198)
36 2kn4_A Immunoglobulin G-bindin 99.8 5.1E-20 1.8E-24 171.8 12.5 132 128-265 2-152 (158)
37 1qm9_A Polypyrimidine tract-bi 99.8 1E-19 3.5E-24 176.3 14.8 175 390-659 5-182 (198)
38 2kn4_A Immunoglobulin G-bindin 99.7 6.5E-18 2.2E-22 157.5 11.9 67 592-658 69-135 (158)
39 4f25_A Polyadenylate-binding p 99.7 3.7E-18 1.3E-22 150.0 8.4 94 101-200 7-113 (115)
40 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.8E-18 3.3E-22 155.9 11.1 97 170-266 25-122 (156)
41 2i2y_A Fusion protein consists 99.7 6.1E-18 2.1E-22 156.2 8.3 117 138-264 10-149 (150)
42 3pgw_S U1-70K; protein-RNA com 99.7 7.2E-18 2.5E-22 182.2 9.3 147 115-265 8-184 (437)
43 4fxv_A ELAV-like protein 1; RN 99.7 3.6E-17 1.2E-21 139.5 9.3 79 184-262 19-98 (99)
44 2lxi_A RNA-binding protein 10; 99.7 3.4E-17 1.2E-21 137.4 7.6 82 185-266 2-86 (91)
45 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.5E-21 136.6 9.3 79 100-182 19-98 (99)
46 2cqd_A RNA-binding region cont 99.7 6.7E-16 2.3E-20 135.8 13.6 85 182-266 15-99 (116)
47 1whw_A Hypothetical protein ri 99.6 1E-15 3.4E-20 130.6 12.3 84 183-266 7-91 (99)
48 2dgs_A DAZ-associated protein 99.6 1.1E-15 3.6E-20 130.5 12.3 85 182-266 8-92 (99)
49 2lkz_A RNA-binding protein 5; 99.6 1.3E-16 4.6E-21 134.4 6.5 79 184-262 9-94 (95)
50 2dnz_A Probable RNA-binding pr 99.6 8.4E-16 2.9E-20 130.0 11.2 84 182-265 3-87 (95)
51 3s8s_A Histone-lysine N-methyl 99.6 5.1E-16 1.8E-20 134.9 9.8 83 182-264 4-87 (110)
52 1x5t_A Splicing factor 3B subu 99.6 9.4E-16 3.2E-20 129.9 10.7 84 183-266 4-89 (96)
53 2lea_A Serine/arginine-rich sp 99.6 3E-16 1E-20 141.8 7.7 119 143-265 6-129 (135)
54 3s7r_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 127.2 9.6 79 182-260 9-87 (87)
55 3ex7_B RNA-binding protein 8A; 99.6 6.8E-16 2.3E-20 137.9 9.0 84 183-266 21-105 (126)
56 1u6f_A Tcubp1, RNA-binding pro 99.6 1.1E-15 3.9E-20 138.9 10.6 84 183-266 41-125 (139)
57 1x4b_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 133.2 11.0 83 184-266 27-109 (116)
58 2hgn_A Heterogeneous nuclear r 99.6 2.5E-16 8.5E-21 142.3 5.4 123 141-265 1-125 (139)
59 2cq0_A Eukaryotic translation 99.6 1.5E-15 5E-20 130.6 9.9 85 182-266 13-98 (103)
60 2rs2_A Musashi-1, RNA-binding 99.6 2.3E-15 7.8E-20 130.8 11.1 84 182-265 23-106 (109)
61 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.2E-15 4.2E-20 126.6 9.0 81 183-263 5-86 (87)
62 2i2y_A Fusion protein consists 99.6 9E-16 3.1E-20 141.6 9.0 123 456-658 9-133 (150)
63 1x5u_A Splicing factor 3B subu 99.6 2.7E-15 9.2E-20 129.4 11.4 85 182-266 13-98 (105)
64 1x5s_A Cold-inducible RNA-bind 99.6 1.5E-15 5E-20 130.3 9.4 85 182-266 10-95 (102)
65 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.7E-15 5.9E-20 129.9 9.8 85 182-266 10-95 (102)
66 3md1_A Nuclear and cytoplasmic 99.6 1.9E-15 6.6E-20 124.2 9.7 80 185-264 2-82 (83)
67 3s8s_A Histone-lysine N-methyl 99.6 1.6E-15 5.4E-20 131.8 9.6 81 98-182 5-85 (110)
68 2lxi_A RNA-binding protein 10; 99.6 2.9E-16 9.8E-21 131.7 4.3 81 100-184 2-84 (91)
69 3q2s_C Cleavage and polyadenyl 99.6 3.5E-16 1.2E-20 154.5 5.7 81 183-263 67-150 (229)
70 2fy1_A RNA-binding motif prote 99.6 4.1E-15 1.4E-19 130.7 11.9 84 182-266 5-89 (116)
71 2cqg_A TDP-43, TAR DNA-binding 99.6 3.5E-15 1.2E-19 128.2 11.2 85 181-266 12-96 (103)
72 2dgo_A Cytotoxic granule-assoc 99.6 7E-15 2.4E-19 129.0 13.1 85 182-266 13-98 (115)
73 2dnm_A SRP46 splicing factor; 99.6 2.2E-15 7.6E-20 129.4 9.4 84 182-265 11-95 (103)
74 1x4h_A RNA-binding protein 28; 99.6 4.3E-15 1.5E-19 129.5 11.3 85 182-266 13-104 (111)
75 2dh8_A DAZ-associated protein 99.6 1.5E-15 5E-20 131.1 8.2 85 182-266 14-98 (105)
76 2cpf_A RNA binding motif prote 99.6 2.8E-15 9.5E-20 127.5 9.8 85 182-266 3-91 (98)
77 2cph_A RNA binding motif prote 99.6 4.5E-15 1.6E-19 128.4 11.1 85 182-266 13-100 (107)
78 2x1f_A MRNA 3'-END-processing 99.6 3.9E-15 1.3E-19 126.1 10.4 82 184-265 2-84 (96)
79 1wi8_A EIF-4B, eukaryotic tran 99.6 5.2E-15 1.8E-19 127.3 11.3 84 182-266 13-97 (104)
80 2cpz_A CUG triplet repeat RNA- 99.6 2.8E-15 9.7E-20 131.6 9.7 84 183-266 24-108 (115)
81 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.1E-15 1E-19 123.6 9.0 80 182-261 5-85 (85)
82 2dng_A Eukaryotic translation 99.6 5.4E-15 1.8E-19 127.0 10.8 83 182-265 13-95 (103)
83 4f25_A Polyadenylate-binding p 99.6 2.5E-15 8.7E-20 131.8 8.7 81 184-266 5-86 (115)
84 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-15 4.5E-20 133.7 6.9 102 99-210 8-109 (115)
85 2mss_A Protein (musashi1); RNA 99.6 1.7E-15 6E-20 121.9 7.1 75 186-260 1-75 (75)
86 3s7r_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 123.5 9.4 66 592-657 10-75 (87)
87 2e5h_A Zinc finger CCHC-type a 99.6 5.4E-15 1.8E-19 124.7 10.3 80 182-261 14-94 (94)
88 2lkz_A RNA-binding protein 5; 99.6 8.2E-16 2.8E-20 129.6 5.0 81 98-182 8-94 (95)
89 1s79_A Lupus LA protein; RRM, 99.6 2.9E-15 1E-19 128.4 8.5 79 183-262 10-88 (103)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.5E-15 8.6E-20 140.9 8.8 82 185-266 73-155 (165)
91 3ns6_A Eukaryotic translation 99.6 1E-15 3.4E-20 130.8 5.5 81 184-264 6-94 (100)
92 3p5t_L Cleavage and polyadenyl 99.6 8.3E-16 2.8E-20 128.7 4.8 82 185-266 2-86 (90)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-15 5.2E-20 122.9 6.1 76 185-260 1-76 (77)
94 3ucg_A Polyadenylate-binding p 99.6 5.8E-15 2E-19 123.1 9.8 80 184-263 6-85 (89)
95 2do4_A Squamous cell carcinoma 99.6 5.7E-15 2E-19 126.1 10.0 83 182-265 15-98 (100)
96 2dhg_A TRNA selenocysteine ass 99.6 4.5E-15 1.6E-19 127.7 9.4 84 182-266 7-93 (104)
97 1wez_A HnRNP H', FTP-3, hetero 99.6 2.5E-15 8.6E-20 128.7 7.6 80 183-264 14-93 (102)
98 2d9p_A Polyadenylate-binding p 99.6 6E-15 2.1E-19 126.7 9.6 82 183-266 14-96 (103)
99 2dnh_A Bruno-like 5, RNA bindi 99.6 6.5E-15 2.2E-19 127.0 9.9 84 182-266 13-100 (105)
100 2cpe_A RNA-binding protein EWS 99.6 6.9E-15 2.4E-19 128.6 10.1 85 182-266 13-106 (113)
101 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-15 5.7E-20 122.0 5.5 75 186-260 1-75 (75)
102 2jrs_A RNA-binding protein 39; 99.6 3.1E-15 1.1E-19 129.6 7.6 84 181-264 23-107 (108)
103 1s79_A Lupus LA protein; RRM, 99.6 5.5E-15 1.9E-19 126.7 9.0 61 593-654 11-71 (103)
104 2dgp_A Bruno-like 4, RNA bindi 99.6 5.6E-15 1.9E-19 127.6 9.1 84 182-265 11-98 (106)
105 2cqc_A Arginine/serine-rich sp 99.6 5.8E-15 2E-19 124.7 8.8 80 183-262 14-94 (95)
106 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.2E-15 2.1E-19 122.3 8.8 81 99-183 6-86 (87)
107 1x4e_A RNA binding motif, sing 99.6 3.9E-15 1.3E-19 123.0 7.4 66 592-657 4-69 (85)
108 1p27_B RNA-binding protein 8A; 99.6 5.2E-15 1.8E-19 127.8 8.3 81 184-264 23-104 (106)
109 2cqg_A TDP-43, TAR DNA-binding 99.6 8.6E-15 2.9E-19 125.7 9.6 66 592-657 14-79 (103)
110 2rs2_A Musashi-1, RNA-binding 99.6 5.9E-15 2E-19 128.1 8.6 67 591-657 23-89 (109)
111 1sjq_A Polypyrimidine tract-bi 99.6 5.7E-15 2E-19 125.8 8.2 80 181-266 13-95 (105)
112 2div_A TRNA selenocysteine ass 99.6 8.3E-15 2.8E-19 124.8 9.2 67 592-658 8-75 (99)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.3E-15 1.1E-19 120.9 6.3 63 594-656 1-63 (77)
114 4a8x_A RNA-binding protein wit 99.6 8E-15 2.7E-19 121.9 8.8 82 183-264 3-86 (88)
115 1wg5_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 124.8 10.2 83 182-265 13-96 (104)
116 1oo0_B CG8781-PA, drosophila Y 99.6 1E-14 3.4E-19 126.9 9.5 83 183-265 25-108 (110)
117 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.8E-19 119.6 9.3 80 101-184 3-82 (83)
118 2div_A TRNA selenocysteine ass 99.6 6.9E-15 2.4E-19 125.3 8.3 83 182-264 7-95 (99)
119 1x4a_A Splicing factor, argini 99.5 2E-14 6.9E-19 124.8 11.0 81 182-265 20-101 (109)
120 2mss_A Protein (musashi1); RNA 99.5 5.9E-15 2E-19 118.8 7.0 59 595-653 1-59 (75)
121 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.2E-14 7.6E-19 123.1 11.1 83 182-266 13-96 (103)
122 2cq3_A RNA-binding protein 9; 99.5 2.8E-14 9.7E-19 122.5 11.7 83 182-266 13-96 (103)
123 1wez_A HnRNP H', FTP-3, hetero 99.5 6.1E-15 2.1E-19 126.3 7.5 60 593-654 15-74 (102)
124 2cqd_A RNA-binding region cont 99.5 1.6E-14 5.5E-19 126.9 10.2 67 592-658 16-82 (116)
125 2jwn_A Embryonic polyadenylate 99.5 1.7E-14 5.7E-19 128.4 10.0 81 184-264 36-116 (124)
126 1wg5_A Heterogeneous nuclear r 99.5 1.5E-14 5.2E-19 124.4 9.4 62 592-654 14-76 (104)
127 2cpy_A RNA-binding protein 12; 99.5 8E-15 2.7E-19 128.4 7.6 81 183-264 14-95 (114)
128 2hgl_A HNRPF protein, heteroge 99.5 3.1E-15 1.1E-19 134.7 5.1 82 182-264 42-126 (136)
129 2do0_A HnRNP M, heterogeneous 99.5 4.9E-14 1.7E-18 123.4 12.7 82 182-264 13-95 (114)
130 2dis_A Unnamed protein product 99.5 3E-14 1E-18 123.7 11.1 84 183-266 7-95 (109)
131 2kxn_B Transformer-2 protein h 99.5 9.2E-15 3.2E-19 130.9 8.0 83 182-264 44-127 (129)
132 2la6_A RNA-binding protein FUS 99.5 1.2E-14 4.1E-19 123.9 8.3 80 182-261 11-99 (99)
133 1iqt_A AUF1, heterogeneous nuc 99.5 4.9E-15 1.7E-19 119.3 5.6 63 595-657 1-63 (75)
134 3p5t_L Cleavage and polyadenyl 99.5 3.8E-15 1.3E-19 124.6 5.1 79 101-183 3-83 (90)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8.3E-15 2.9E-19 125.1 7.3 82 182-264 17-99 (100)
136 2x1f_A MRNA 3'-END-processing 99.5 1.6E-14 5.6E-19 122.3 8.9 81 100-184 3-83 (96)
137 3n9u_C Cleavage and polyadenyl 99.5 1.2E-14 4.1E-19 134.5 8.7 82 183-264 54-138 (156)
138 3ns6_A Eukaryotic translation 99.5 4.1E-15 1.4E-19 127.0 5.0 81 99-183 6-93 (100)
139 2dnz_A Probable RNA-binding pr 99.5 1.7E-14 5.9E-19 121.8 8.8 82 99-184 5-86 (95)
140 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.3E-14 4.6E-19 119.7 7.9 79 99-181 7-85 (85)
141 2dgu_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 121.2 11.6 77 183-267 10-87 (103)
142 3r27_A HnRNP L, heterogeneous 99.5 2E-14 6.9E-19 121.2 9.1 77 182-264 19-98 (100)
143 2khc_A Testis-specific RNP-typ 99.5 1.4E-14 4.9E-19 127.7 8.6 79 183-261 39-118 (118)
144 2dgx_A KIAA0430 protein; RRM d 99.5 2.2E-14 7.7E-19 121.4 9.4 80 183-265 8-92 (96)
145 1p1t_A Cleavage stimulation fa 99.5 1E-14 3.5E-19 125.5 7.4 82 184-265 8-90 (104)
146 2cq4_A RNA binding motif prote 99.5 1.1E-14 3.9E-19 127.5 7.7 81 184-264 25-105 (114)
147 2krb_A Eukaryotic translation 99.5 1.2E-14 4.2E-19 118.9 7.4 63 594-658 2-70 (81)
148 2cqc_A Arginine/serine-rich sp 99.5 2.4E-14 8.2E-19 120.9 9.4 81 98-182 14-94 (95)
149 2dgv_A HnRNP M, heterogeneous 99.5 1.9E-14 6.4E-19 120.8 8.7 82 182-265 6-88 (92)
150 2ywk_A Putative RNA-binding pr 99.5 1.5E-14 5.3E-19 122.1 8.2 80 182-262 14-94 (95)
151 1x5u_A Splicing factor 3B subu 99.5 1.3E-14 4.4E-19 125.1 7.8 87 98-188 14-100 (105)
152 2dgw_A Probable RNA-binding pr 99.5 2.9E-14 9.8E-19 119.4 9.6 81 183-265 9-89 (91)
153 2e5h_A Zinc finger CCHC-type a 99.5 2.4E-14 8.3E-19 120.6 9.0 80 98-181 15-94 (94)
154 2wbr_A GW182, gawky, LD47780P; 99.5 2.4E-14 8.1E-19 116.3 8.5 70 101-180 9-78 (89)
155 2dgs_A DAZ-associated protein 99.5 2.1E-14 7.3E-19 122.3 8.7 81 99-184 10-90 (99)
156 1whw_A Hypothetical protein ri 99.5 1.8E-14 6.2E-19 122.7 8.2 81 100-184 9-89 (99)
157 2cq0_A Eukaryotic translation 99.5 1.8E-14 6E-19 123.8 8.2 82 99-184 15-96 (103)
158 2cqp_A RNA-binding protein 12; 99.5 8.4E-15 2.9E-19 124.6 6.0 82 182-263 13-95 (98)
159 3ulh_A THO complex subunit 4; 99.5 2.5E-14 8.6E-19 123.7 9.1 79 182-261 27-106 (107)
160 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-14 4E-19 128.5 7.1 64 592-656 22-89 (123)
161 1x4c_A Splicing factor, argini 99.5 6.8E-14 2.3E-18 121.2 11.8 77 183-266 14-96 (108)
162 2cpi_A CCR4-NOT transcription 99.5 2E-14 6.7E-19 125.3 8.1 83 183-265 14-103 (111)
163 2dnn_A RNA-binding protein 12; 99.5 3.2E-14 1.1E-18 123.0 9.3 79 184-264 16-94 (109)
164 2do4_A Squamous cell carcinoma 99.5 3.5E-14 1.2E-18 121.1 9.5 82 98-184 16-97 (100)
165 2cpy_A RNA-binding protein 12; 99.5 1.7E-14 6E-19 126.3 7.5 62 592-654 14-76 (114)
166 2cpz_A CUG triplet repeat RNA- 99.5 2.7E-14 9.2E-19 125.3 8.7 83 98-184 24-106 (115)
167 3ucg_A Polyadenylate-binding p 99.5 3.4E-14 1.1E-18 118.4 8.8 79 100-183 7-85 (89)
168 2ek1_A RNA-binding protein 12; 99.5 8.5E-15 2.9E-19 123.7 5.2 81 182-262 13-94 (95)
169 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 5.8E-19 123.6 7.1 83 98-184 11-93 (102)
170 1x4d_A Matrin 3; structural ge 99.5 3.7E-14 1.3E-18 120.7 9.1 77 183-265 14-94 (102)
171 2ad9_A Polypyrimidine tract-bi 99.5 4.3E-14 1.5E-18 123.5 9.6 79 182-266 29-110 (119)
172 2dnm_A SRP46 splicing factor; 99.5 2E-14 7E-19 123.4 7.4 81 99-183 13-93 (103)
173 2lcw_A RNA-binding protein FUS 99.3 1.4E-15 4.7E-20 133.8 0.0 84 182-265 5-97 (116)
174 2dh8_A DAZ-associated protein 99.5 3.7E-14 1.3E-18 122.2 9.0 80 100-184 16-96 (105)
175 2cq1_A PTB-like protein L; RRM 99.5 6.8E-14 2.3E-18 119.2 10.5 79 182-266 13-94 (101)
176 2fc9_A NCL protein; structure 99.5 6.9E-14 2.4E-18 119.6 10.7 80 182-265 13-93 (101)
177 2dgo_A Cytotoxic granule-assoc 99.5 3.9E-14 1.3E-18 124.2 9.3 81 100-184 16-96 (115)
178 2m2b_A RNA-binding protein 10; 99.5 1.1E-14 3.7E-19 131.0 5.6 82 183-265 22-110 (131)
179 2ki2_A SS-DNA binding protein 99.5 5.5E-15 1.9E-19 123.6 3.5 80 185-265 2-82 (90)
180 1x4h_A RNA-binding protein 28; 99.5 3.8E-14 1.3E-18 123.4 9.0 83 98-184 14-102 (111)
181 1p27_B RNA-binding protein 8A; 99.5 3.2E-14 1.1E-18 122.8 8.3 81 100-184 24-104 (106)
182 2cpf_A RNA binding motif prote 99.5 3.1E-14 1.1E-18 121.0 8.1 83 98-184 4-89 (98)
183 2wbr_A GW182, gawky, LD47780P; 99.5 2.7E-14 9.2E-19 116.0 7.3 73 183-261 6-79 (89)
184 1x5t_A Splicing factor 3B subu 99.5 2E-14 6.7E-19 121.7 6.8 82 99-184 5-87 (96)
185 2jrs_A RNA-binding protein 39; 99.5 3E-14 1E-18 123.4 7.9 82 99-184 26-107 (108)
186 2lea_A Serine/arginine-rich sp 99.5 1.5E-14 5E-19 130.7 6.1 66 593-658 47-112 (135)
187 2dnq_A RNA-binding protein 4B; 99.5 7.3E-14 2.5E-18 116.7 9.9 77 182-266 6-83 (90)
188 2la6_A RNA-binding protein FUS 99.5 3.3E-14 1.1E-18 121.1 7.8 78 99-180 12-98 (99)
189 2hgm_A HNRPF protein, heteroge 99.5 1.8E-14 6.2E-19 127.6 6.3 80 183-264 41-122 (126)
190 2hgl_A HNRPF protein, heteroge 99.5 2.5E-14 8.4E-19 128.8 7.3 64 593-658 44-110 (136)
191 1x5s_A Cold-inducible RNA-bind 99.5 2E-14 7E-19 123.1 6.4 82 99-184 12-93 (102)
192 1wex_A Hypothetical protein (r 99.5 1.1E-13 3.9E-18 118.5 11.0 79 182-266 13-94 (104)
193 2f3j_A RNA and export factor b 99.5 2.4E-13 8.2E-18 128.5 14.4 67 591-658 86-152 (177)
194 2hgm_A HNRPF protein, heteroge 99.5 4E-14 1.4E-18 125.3 8.2 62 593-656 42-105 (126)
195 1x4e_A RNA binding motif, sing 99.5 2E-14 6.7E-19 118.8 5.8 80 98-181 4-83 (85)
196 2dnn_A RNA-binding protein 12; 99.5 4.3E-14 1.5E-18 122.2 8.1 60 593-654 16-75 (109)
197 2lmi_A GRSF-1, G-rich sequence 99.5 2.8E-14 9.5E-19 123.4 7.0 65 592-658 10-77 (107)
198 3n9u_C Cleavage and polyadenyl 99.5 4.2E-14 1.4E-18 130.8 8.5 79 100-182 56-136 (156)
199 2ywk_A Putative RNA-binding pr 99.5 6E-14 2.1E-18 118.4 8.8 78 99-181 16-93 (95)
200 2db1_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 124.8 7.9 64 592-657 16-82 (118)
201 2dnl_A Cytoplasmic polyadenyla 99.5 2.3E-14 7.9E-19 125.5 6.3 64 592-656 7-73 (114)
202 2kxn_B Transformer-2 protein h 99.5 3.9E-14 1.3E-18 126.8 7.9 83 97-183 44-126 (129)
203 2hvz_A Splicing factor, argini 99.5 5.9E-14 2E-18 120.0 8.7 76 185-265 1-77 (101)
204 2dis_A Unnamed protein product 99.5 5.3E-14 1.8E-18 122.1 8.3 65 592-656 7-73 (109)
205 2khc_A Testis-specific RNP-typ 99.5 5.3E-14 1.8E-18 124.0 8.4 78 100-181 40-118 (118)
206 2cph_A RNA binding motif prote 99.5 5.4E-14 1.8E-18 121.6 8.2 83 98-184 14-98 (107)
207 2fc8_A NCL protein; structure 99.5 7.2E-14 2.5E-18 119.7 8.9 81 182-265 13-94 (102)
208 1x5o_A RNA binding motif, sing 99.5 1.1E-13 3.9E-18 121.0 10.4 66 592-658 24-89 (114)
209 1oo0_B CG8781-PA, drosophila Y 99.5 5.6E-14 1.9E-18 122.2 8.3 81 100-184 27-107 (110)
210 2err_A Ataxin-2-binding protei 99.5 5.3E-14 1.8E-18 122.1 8.1 80 183-264 28-108 (109)
211 1wel_A RNA-binding protein 12; 99.5 4.1E-14 1.4E-18 125.9 7.5 67 592-659 24-90 (124)
212 2dng_A Eukaryotic translation 99.5 6.4E-14 2.2E-18 120.2 8.5 80 99-184 15-94 (103)
213 2kt5_A RNA and export factor-b 99.5 7.3E-14 2.5E-18 124.2 9.1 82 183-265 34-116 (124)
214 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 9.3E-14 3.2E-18 126.3 9.9 78 183-260 62-140 (140)
215 2cq4_A RNA binding motif prote 99.5 6.3E-14 2.2E-18 122.7 8.5 79 100-183 26-104 (114)
216 2dha_A FLJ20171 protein; RRM d 99.5 1.9E-14 6.4E-19 127.2 5.0 82 182-264 21-106 (123)
217 2db1_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 124.8 7.0 82 182-264 15-99 (118)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2E-13 6.8E-18 124.1 11.9 67 592-658 62-128 (140)
219 2dhg_A TRNA selenocysteine ass 99.5 8.5E-14 2.9E-18 119.7 8.9 82 98-184 8-91 (104)
220 2nlw_A Eukaryotic translation 99.5 6.4E-14 2.2E-18 120.7 8.1 79 184-264 15-101 (105)
221 3d2w_A TAR DNA-binding protein 99.5 1.1E-13 3.9E-18 115.2 9.3 81 179-265 6-86 (89)
222 2xs2_A Deleted in azoospermia- 99.5 3.3E-14 1.1E-18 121.8 6.2 82 183-266 8-89 (102)
223 3r27_A HnRNP L, heterogeneous 99.5 7E-14 2.4E-18 117.9 7.9 60 591-656 19-78 (100)
224 1sjq_A Polypyrimidine tract-bi 99.5 9.1E-14 3.1E-18 118.4 8.6 76 99-184 15-93 (105)
225 2dnh_A Bruno-like 5, RNA bindi 99.5 9.2E-14 3.1E-18 119.7 8.6 81 99-184 15-98 (105)
226 2hgn_A Heterogeneous nuclear r 99.5 2.7E-14 9.3E-19 128.9 5.4 62 593-657 46-107 (139)
227 2hvz_A Splicing factor, argini 99.5 2.6E-14 8.8E-19 122.3 4.9 84 101-193 2-100 (101)
228 2fy1_A RNA-binding motif prote 99.5 6.4E-14 2.2E-18 123.0 7.5 81 99-184 7-87 (116)
229 2krb_A Eukaryotic translation 99.5 5.8E-14 2E-18 114.8 6.8 71 185-257 2-80 (81)
230 1x4g_A Nucleolysin TIAR; struc 99.5 1.8E-13 6.2E-18 118.7 10.3 80 181-266 22-102 (109)
231 1wi8_A EIF-4B, eukaryotic tran 99.5 7E-14 2.4E-18 120.2 7.5 79 100-184 16-95 (104)
232 2dgp_A Bruno-like 4, RNA bindi 99.5 4.3E-14 1.5E-18 122.0 6.2 81 100-184 14-97 (106)
233 4a8x_A RNA-binding protein wit 99.5 6.6E-14 2.3E-18 116.3 7.1 80 100-183 5-85 (88)
234 2d9p_A Polyadenylate-binding p 99.5 9.5E-14 3.2E-18 119.2 8.2 81 98-184 14-94 (103)
235 1p1t_A Cleavage stimulation fa 99.5 6.1E-14 2.1E-18 120.5 7.0 82 99-184 8-89 (104)
236 3ulh_A THO complex subunit 4; 99.5 1.2E-13 4E-18 119.4 8.9 79 98-181 28-106 (107)
237 2dgt_A RNA-binding protein 30; 99.5 2.2E-13 7.6E-18 114.2 10.2 77 182-266 8-85 (92)
238 2cq1_A PTB-like protein L; RRM 99.5 1.1E-13 3.8E-18 117.8 8.3 58 592-655 14-71 (101)
239 2cpx_A Hypothetical protein FL 99.5 2.8E-14 9.7E-19 125.1 4.7 84 183-266 24-108 (115)
240 1why_A Hypothetical protein ri 99.5 1.7E-13 5.9E-18 116.1 9.4 76 183-264 16-94 (97)
241 2ad9_A Polypyrimidine tract-bi 99.5 8.7E-14 3E-18 121.6 7.7 60 591-656 29-88 (119)
242 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-14 4.3E-19 124.2 2.2 83 183-266 16-98 (101)
243 2cpe_A RNA-binding protein EWS 99.5 8.5E-14 2.9E-18 121.6 7.5 82 99-184 15-104 (113)
244 2jvr_A Nucleolar protein 3; RN 99.5 1.1E-13 3.9E-18 119.8 8.2 78 183-264 27-106 (111)
245 2a3j_A U1 small nuclear ribonu 99.5 1.5E-13 5.3E-18 122.1 9.2 81 182-265 27-112 (127)
246 1x4f_A Matrin 3; structural ge 99.5 9E-14 3.1E-18 120.1 7.3 80 181-266 22-105 (112)
247 2cqp_A RNA-binding protein 12; 99.5 5.2E-14 1.8E-18 119.6 5.7 80 100-183 16-95 (98)
248 2dnp_A RNA-binding protein 14; 99.5 2.4E-13 8.1E-18 113.6 9.7 76 182-265 7-83 (90)
249 2lmi_A GRSF-1, G-rich sequence 99.5 2.7E-14 9.1E-19 123.6 3.9 82 182-264 9-93 (107)
250 1x4f_A Matrin 3; structural ge 99.4 9.8E-14 3.3E-18 119.9 7.4 59 591-655 23-82 (112)
251 1u6f_A Tcubp1, RNA-binding pro 99.4 1.1E-13 3.8E-18 125.7 8.1 81 100-184 43-123 (139)
252 2xs2_A Deleted in azoospermia- 99.4 6.4E-14 2.2E-18 120.0 6.2 60 593-653 9-68 (102)
253 1wf0_A TDP-43, TAR DNA-binding 99.4 1E-13 3.6E-18 115.2 7.2 79 182-266 3-81 (88)
254 2dgv_A HnRNP M, heterogeneous 99.4 1.9E-13 6.6E-18 114.6 8.9 79 100-184 8-87 (92)
255 2ek1_A RNA-binding protein 12; 99.4 5.6E-14 1.9E-18 118.7 5.6 78 100-181 16-93 (95)
256 1x5o_A RNA binding motif, sing 99.4 1.3E-13 4.4E-18 120.7 8.1 81 182-263 23-112 (114)
257 2j76_E EIF-4B, EIF4B, eukaryot 99.4 6.2E-14 2.1E-18 119.6 5.8 79 99-183 18-98 (100)
258 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.8E-13 6.2E-18 126.9 9.4 81 98-182 38-118 (156)
259 2m2b_A RNA-binding protein 10; 99.4 3.5E-14 1.2E-18 127.6 4.4 82 100-186 24-111 (131)
260 1wel_A RNA-binding protein 12; 99.4 1.8E-14 6.3E-19 128.1 2.5 82 183-264 24-105 (124)
261 1wf1_A RNA-binding protein RAL 99.4 1.6E-13 5.5E-18 119.3 8.4 73 184-264 27-101 (110)
262 2ki2_A SS-DNA binding protein 99.4 2.9E-14 9.8E-19 119.2 3.4 79 101-184 3-81 (90)
263 2j8a_A Histone-lysine N-methyl 99.4 8.8E-14 3E-18 120.6 6.5 60 594-653 3-74 (136)
264 2do0_A HnRNP M, heterogeneous 99.4 2.7E-13 9.4E-18 118.6 9.8 80 98-182 14-93 (114)
265 2cpj_A Non-POU domain-containi 99.4 2.1E-13 7.2E-18 116.1 8.7 78 182-265 13-91 (99)
266 1x4b_A Heterogeneous nuclear r 99.4 1.3E-13 4.5E-18 121.0 7.6 80 100-184 28-107 (116)
267 2cqi_A Nucleolysin TIAR; RNA r 99.4 2.3E-13 7.7E-18 116.8 8.9 80 99-184 15-94 (103)
268 2kvi_A Nuclear polyadenylated 99.4 1E-13 3.6E-18 117.3 6.7 77 182-266 8-86 (96)
269 2e5g_A U6 snRNA-specific termi 99.4 3.2E-13 1.1E-17 113.8 9.6 79 183-266 7-85 (94)
270 2cpi_A CCR4-NOT transcription 99.4 1.3E-13 4.6E-18 120.0 7.5 82 99-184 15-102 (111)
271 2dgx_A KIAA0430 protein; RRM d 99.4 1.7E-13 5.8E-18 116.0 7.9 77 101-184 11-91 (96)
272 1wex_A Hypothetical protein (r 99.4 2.1E-13 7.3E-18 116.8 8.6 58 592-655 14-71 (104)
273 3ex7_B RNA-binding protein 8A; 99.4 1.2E-13 4.2E-18 123.1 7.3 81 100-184 23-103 (126)
274 2cpd_A Apobec-1 stimulating pr 99.4 5.3E-13 1.8E-17 113.5 11.0 76 182-265 13-91 (99)
275 2j8a_A Histone-lysine N-methyl 99.4 1.7E-13 6E-18 118.7 7.8 80 101-180 4-93 (136)
276 2cq3_A RNA-binding protein 9; 99.4 3.3E-13 1.1E-17 115.7 9.6 80 99-184 15-94 (103)
277 3lqv_A PRE-mRNA branch site pr 99.4 2E-13 6.9E-18 119.6 8.3 81 181-264 5-86 (115)
278 2cqh_A IGF-II mRNA-binding pro 99.4 1.7E-13 5.9E-18 115.2 7.4 78 182-266 6-86 (93)
279 1nu4_A U1A RNA binding domain; 99.4 1.7E-13 5.8E-18 116.1 7.3 82 181-265 5-91 (97)
280 1x4d_A Matrin 3; structural ge 99.4 9.3E-14 3.2E-18 118.2 5.5 59 592-656 14-73 (102)
281 2jwn_A Embryonic polyadenylate 99.4 2.1E-13 7.2E-18 121.3 7.9 79 100-183 37-115 (124)
282 3d2w_A TAR DNA-binding protein 99.4 2.2E-13 7.6E-18 113.4 7.2 57 592-653 10-66 (89)
283 2la4_A Nuclear and cytoplasmic 99.4 1.9E-13 6.3E-18 116.9 6.9 76 182-263 25-101 (101)
284 2dgw_A Probable RNA-binding pr 99.4 3.6E-13 1.2E-17 112.7 8.3 77 100-183 11-87 (91)
285 2kt5_A RNA and export factor-b 99.4 3.2E-13 1.1E-17 120.1 8.4 79 100-183 36-114 (124)
286 2voo_A Lupus LA protein; RNA-b 99.4 6.9E-13 2.4E-17 127.3 11.3 79 184-263 109-187 (193)
287 2ytc_A PRE-mRNA-splicing facto 99.4 5.6E-13 1.9E-17 109.9 9.2 74 182-261 10-85 (85)
288 1fjc_A Nucleolin RBD2, protein 99.4 1.9E-13 6.4E-18 115.7 6.3 78 183-265 15-93 (96)
289 2xnq_A Nuclear polyadenylated 99.4 7.4E-13 2.5E-17 112.2 9.8 75 181-263 19-95 (97)
290 3beg_B Splicing factor, argini 99.4 3.4E-13 1.1E-17 118.2 7.7 75 183-264 15-95 (115)
291 1x4a_A Splicing factor, argini 99.4 5.4E-13 1.8E-17 115.7 8.8 79 99-184 22-100 (109)
292 2e5j_A Methenyltetrahydrofolat 99.4 2.9E-13 1E-17 114.7 6.9 78 182-264 17-95 (97)
293 2nlw_A Eukaryotic translation 99.4 3.7E-13 1.3E-17 115.9 7.5 78 100-183 16-100 (105)
294 1rk8_A CG8781-PA, CG8781-PA pr 99.4 5.1E-13 1.7E-17 125.1 9.1 80 101-184 74-153 (165)
295 2jvo_A Nucleolar protein 3; nu 99.4 5.7E-13 1.9E-17 115.3 8.7 76 182-265 29-105 (108)
296 2dnl_A Cytoplasmic polyadenyla 99.4 5.6E-13 1.9E-17 116.6 8.6 79 182-262 6-87 (114)
297 1whx_A Hypothetical protein ri 99.4 4.7E-13 1.6E-17 116.4 7.7 75 184-264 10-85 (111)
298 3q2s_C Cleavage and polyadenyl 99.4 2.9E-13 9.9E-18 133.5 7.0 79 100-182 69-149 (229)
299 2f3j_A RNA and export factor b 99.4 5.6E-13 1.9E-17 126.0 8.6 81 183-264 87-168 (177)
300 2err_A Ataxin-2-binding protei 99.4 4.5E-13 1.5E-17 116.2 7.4 78 100-183 30-107 (109)
301 1x5p_A Negative elongation fac 99.4 2.2E-12 7.4E-17 109.3 11.3 75 183-265 14-89 (97)
302 2cq2_A Hypothetical protein LO 99.4 8.9E-13 3.1E-17 113.9 8.8 79 182-266 23-109 (114)
303 2cpx_A Hypothetical protein FL 99.4 2.6E-13 8.9E-18 118.9 5.3 67 592-658 24-90 (115)
304 2pe8_A Splicing factor 45; RRM 99.4 1.3E-12 4.6E-17 112.0 9.1 80 99-182 7-93 (105)
305 2la4_A Nuclear and cytoplasmic 99.4 1.1E-12 3.6E-17 112.1 8.0 73 100-182 28-100 (101)
306 2cq2_A Hypothetical protein LO 99.4 6.3E-13 2.2E-17 114.9 6.4 61 591-657 23-85 (114)
307 2e44_A Insulin-like growth fac 99.4 8.9E-13 3.1E-17 111.4 7.3 78 183-264 14-93 (96)
308 2a3j_A U1 small nuclear ribonu 99.4 7.5E-13 2.6E-17 117.6 7.0 80 98-184 28-111 (127)
309 2lcw_A RNA-binding protein FUS 99.0 8.9E-14 3E-18 122.2 0.0 82 99-184 7-96 (116)
310 2fc9_A NCL protein; structure 99.3 1.2E-12 4.1E-17 111.8 7.0 78 99-184 15-92 (101)
311 1wg1_A KIAA1579 protein, homol 99.3 1.2E-12 4E-17 108.8 6.8 75 183-264 4-79 (88)
312 2jvr_A Nucleolar protein 3; RN 99.3 8.9E-13 3.1E-17 114.2 6.2 77 98-182 26-104 (111)
313 1why_A Hypothetical protein ri 99.3 1.7E-12 5.8E-17 109.9 7.8 77 98-184 16-94 (97)
314 1x4c_A Splicing factor, argini 99.3 2.7E-12 9.3E-17 111.0 8.9 74 100-184 16-94 (108)
315 2ytc_A PRE-mRNA-splicing facto 99.3 2.9E-12 9.8E-17 105.6 8.6 74 98-181 11-85 (85)
316 2dnq_A RNA-binding protein 4B; 99.3 2.3E-12 7.7E-17 107.5 8.0 74 99-184 8-81 (90)
317 1x4g_A Nucleolysin TIAR; struc 99.3 2.2E-12 7.5E-17 111.8 8.2 76 99-184 24-100 (109)
318 1wf0_A TDP-43, TAR DNA-binding 99.3 6E-13 2.1E-17 110.5 4.4 58 592-654 4-61 (88)
319 2fc8_A NCL protein; structure 99.3 2E-12 6.9E-17 110.6 7.8 80 98-184 14-93 (102)
320 3beg_B Splicing factor, argini 99.3 1.3E-12 4.3E-17 114.5 6.5 59 593-658 16-74 (115)
321 1sjr_A Polypyrimidine tract-bi 99.3 3.1E-12 1E-16 117.5 9.0 77 185-265 47-126 (164)
322 1nu4_A U1A RNA binding domain; 99.3 1.2E-12 4.2E-17 110.8 5.9 80 98-184 7-90 (97)
323 2cpj_A Non-POU domain-containi 99.3 1.8E-12 6.2E-17 110.2 6.9 77 98-184 14-90 (99)
324 3egn_A RNA-binding protein 40; 99.3 3.7E-13 1.3E-17 122.8 2.6 83 183-265 44-132 (143)
325 1fj7_A Nucleolin RBD1, protein 99.3 1.6E-13 5.6E-18 117.2 0.0 79 100-184 18-96 (101)
326 3zzy_A Polypyrimidine tract-bi 99.3 4.8E-12 1.6E-16 111.9 9.3 76 185-265 29-108 (130)
327 2voo_A Lupus LA protein; RNA-b 99.3 3.9E-12 1.3E-16 122.1 9.3 64 593-657 109-172 (193)
328 2diu_A KIAA0430 protein; struc 99.3 6.2E-12 2.1E-16 103.1 8.9 73 184-266 8-87 (96)
329 2hzc_A Splicing factor U2AF 65 99.3 4.9E-12 1.7E-16 104.6 8.3 71 183-259 5-86 (87)
330 2pe8_A Splicing factor 45; RRM 99.3 8.4E-12 2.9E-16 107.0 9.9 82 182-263 6-94 (105)
331 2dgu_A Heterogeneous nuclear r 99.3 4E-12 1.4E-16 108.9 7.8 76 97-184 9-84 (103)
332 2xnq_A Nuclear polyadenylated 99.3 5.6E-12 1.9E-16 106.7 8.7 75 97-183 20-95 (97)
333 1x5p_A Negative elongation fac 99.3 7E-12 2.4E-16 106.1 9.2 74 100-184 15-88 (97)
334 2jvo_A Nucleolar protein 3; nu 99.3 4.4E-12 1.5E-16 109.7 8.0 75 98-184 29-104 (108)
335 1whx_A Hypothetical protein ri 99.3 1.6E-12 5.6E-17 113.0 5.3 73 100-182 10-83 (111)
336 2e5j_A Methenyltetrahydrofolat 99.3 2.2E-12 7.5E-17 109.3 5.6 77 99-184 19-95 (97)
337 1fjc_A Nucleolin RBD2, protein 99.3 2.2E-12 7.5E-17 109.0 4.7 76 100-184 17-92 (96)
338 2diu_A KIAA0430 protein; struc 99.3 4.8E-12 1.7E-16 103.7 6.5 77 96-186 5-87 (96)
339 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 4.1E-16 108.9 9.5 74 186-265 27-104 (124)
340 2kvi_A Nuclear polyadenylated 99.3 5.3E-12 1.8E-16 106.7 6.8 76 97-184 8-84 (96)
341 2dgt_A RNA-binding protein 30; 99.3 9.5E-12 3.2E-16 104.2 8.3 73 100-184 11-83 (92)
342 2e5g_A U6 snRNA-specific termi 99.3 1.3E-11 4.6E-16 103.7 8.7 75 100-184 9-83 (94)
343 2cpd_A Apobec-1 stimulating pr 99.3 1.4E-11 4.8E-16 104.7 8.9 75 98-184 14-90 (99)
344 2dnp_A RNA-binding protein 14; 99.2 1.1E-11 3.7E-16 103.4 7.7 75 98-184 8-82 (90)
345 1sjr_A Polypyrimidine tract-bi 99.2 7.4E-12 2.5E-16 115.0 7.1 76 101-184 47-125 (164)
346 1wf1_A RNA-binding protein RAL 99.2 8.7E-12 3E-16 108.2 7.1 71 101-183 28-100 (110)
347 2e5i_A Heterogeneous nuclear r 99.2 2.4E-11 8.3E-16 106.9 9.9 58 595-658 27-85 (124)
348 1wg1_A KIAA1579 protein, homol 99.2 9.7E-12 3.3E-16 103.2 6.9 74 99-183 5-78 (88)
349 3pgw_S U1-70K; protein-RNA com 99.2 9.8E-12 3.4E-16 134.2 8.8 80 100-183 103-182 (437)
350 2cqh_A IGF-II mRNA-binding pro 99.2 6E-12 2.1E-16 105.6 5.4 76 98-184 7-84 (93)
351 3zzy_A Polypyrimidine tract-bi 99.2 1.6E-11 5.4E-16 108.6 8.3 74 102-184 30-107 (130)
352 2bz2_A Negative elongation fac 99.2 1.2E-11 4.3E-16 109.0 7.4 75 183-265 38-113 (121)
353 2e44_A Insulin-like growth fac 99.2 1.1E-11 3.6E-16 104.7 6.4 78 98-183 14-92 (96)
354 3u1l_A PRE-mRNA-splicing facto 99.2 2.2E-11 7.7E-16 119.4 9.3 95 166-266 107-232 (240)
355 3egn_A RNA-binding protein 40; 99.2 3.3E-12 1.1E-16 116.5 2.3 79 98-183 44-130 (143)
356 2bz2_A Negative elongation fac 99.2 1.9E-11 6.6E-16 107.8 6.5 75 99-184 38-112 (121)
357 2hzc_A Splicing factor U2AF 65 99.2 3.2E-11 1.1E-15 99.7 6.7 70 99-179 6-86 (87)
358 3v4m_A Splicing factor U2AF 65 99.1 1.1E-10 3.7E-15 100.1 8.9 81 183-263 4-97 (105)
359 2dit_A HIV TAT specific factor 99.1 2E-10 6.9E-15 99.8 10.7 80 182-265 13-104 (112)
360 3v4m_A Splicing factor U2AF 65 99.1 7.9E-11 2.7E-15 101.0 7.4 67 112-182 28-96 (105)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 3E-10 1E-14 96.1 10.9 66 194-265 27-92 (100)
362 1jmt_A Splicing factor U2AF 35 99.1 7.4E-11 2.5E-15 101.0 6.8 66 110-180 26-103 (104)
363 3ue2_A Poly(U)-binding-splicin 99.1 6.8E-11 2.3E-15 103.4 6.6 78 100-181 20-107 (118)
364 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.7E-10 9.2E-15 96.4 10.1 52 603-659 27-78 (100)
365 2dit_A HIV TAT specific factor 99.1 1.3E-10 4.5E-15 101.0 8.1 63 113-183 40-102 (112)
366 1jmt_A Splicing factor U2AF 35 99.1 5.1E-11 1.8E-15 102.0 4.7 71 189-260 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.1 1.9E-10 6.6E-15 100.5 7.2 81 182-262 18-108 (118)
368 3u1l_A PRE-mRNA-splicing facto 99.1 1.7E-10 6E-15 113.1 7.1 76 99-184 133-230 (240)
369 3tht_A Alkylated DNA repair pr 99.0 2.7E-10 9.1E-15 117.9 7.7 62 590-657 15-78 (345)
370 3tht_A Alkylated DNA repair pr 98.9 2.7E-09 9.1E-14 110.4 8.3 80 176-261 10-97 (345)
371 3s6e_A RNA-binding protein 39; 98.9 1.3E-09 4.3E-14 94.6 4.7 62 112-181 30-91 (114)
372 3s6e_A RNA-binding protein 39; 98.8 9.8E-09 3.3E-13 89.0 6.7 76 184-263 7-93 (114)
373 1owx_A Lupus LA protein, SS-B, 98.7 2.1E-08 7.1E-13 87.1 7.6 59 591-655 16-76 (121)
374 1owx_A Lupus LA protein, SS-B, 98.7 4.9E-08 1.7E-12 84.7 8.1 74 182-261 16-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.6 1.6E-07 5.6E-12 76.2 8.9 75 182-264 5-87 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.5 2.1E-07 7.3E-12 75.5 6.3 56 114-182 30-85 (91)
377 3dxb_A Thioredoxin N-terminall 98.4 2.5E-07 8.5E-12 90.6 5.7 68 110-181 140-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 4.9E-07 1.7E-11 73.7 5.0 73 182-262 13-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.2 1.7E-06 5.9E-11 84.5 7.3 68 195-262 140-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.2 7.4E-07 2.5E-11 72.7 3.7 55 114-181 39-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 97.7 0.00014 4.7E-09 60.5 7.8 69 100-178 22-95 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.5 0.00028 9.5E-09 58.2 7.9 86 99-197 8-99 (104)
383 2dhx_A Poly (ADP-ribose) polym 97.5 0.00076 2.6E-08 55.7 9.7 74 184-265 8-86 (104)
384 2l9w_A U4/U6 snRNA-associated- 97.4 0.00031 1E-08 58.4 7.1 71 184-260 21-97 (117)
385 1whv_A Poly(A)-specific ribonu 96.4 0.0043 1.5E-07 50.5 5.4 52 595-654 17-68 (100)
386 1wwh_A Nucleoporin 35, nucleop 96.3 0.021 7.3E-07 48.6 9.2 73 183-262 23-96 (119)
387 3ctr_A Poly(A)-specific ribonu 96.2 0.0054 1.8E-07 50.1 4.9 51 596-654 8-58 (101)
388 1wey_A Calcipressin 1; structu 96.1 0.011 3.9E-07 48.9 6.4 61 592-658 4-69 (104)
389 1whv_A Poly(A)-specific ribonu 95.9 0.015 5.1E-07 47.4 6.0 52 98-157 14-65 (100)
390 1uw4_A UPF3X; nonsense mediate 95.8 0.029 1E-06 45.6 7.5 61 594-654 2-64 (91)
391 1uw4_A UPF3X; nonsense mediate 95.7 0.043 1.5E-06 44.6 8.3 70 100-173 2-73 (91)
392 1wey_A Calcipressin 1; structu 95.6 0.027 9.4E-07 46.6 6.6 72 100-181 6-82 (104)
393 3ctr_A Poly(A)-specific ribonu 95.3 0.046 1.6E-06 44.7 6.9 50 100-157 6-55 (101)
394 1wwh_A Nucleoporin 35, nucleop 95.1 0.068 2.3E-06 45.5 7.9 62 100-172 24-85 (119)
395 3p3d_A Nucleoporin 53; structu 94.2 0.061 2.1E-06 46.5 5.5 77 185-262 8-98 (132)
396 2l08_A Regulator of nonsense t 94.0 0.068 2.3E-06 43.7 5.0 70 99-172 9-80 (97)
397 3pq1_A Poly(A) RNA polymerase; 92.4 0.047 1.6E-06 58.2 2.3 56 184-245 53-108 (464)
398 2l08_A Regulator of nonsense t 91.8 0.29 9.8E-06 40.0 5.8 63 184-246 9-73 (97)
399 3pq1_A Poly(A) RNA polymerase; 91.2 0.091 3.1E-06 56.0 2.9 57 592-654 52-108 (464)
400 3p3d_A Nucleoporin 53; structu 90.6 0.17 5.8E-06 43.7 3.4 75 100-179 7-95 (132)
401 3d45_A Poly(A)-specific ribonu 76.1 3.7 0.00013 44.4 6.7 53 594-655 441-493 (507)
402 3d45_A Poly(A)-specific ribonu 63.4 11 0.00039 40.6 7.0 51 99-157 439-489 (507)
403 4e8u_A Putative uncharacterize 48.3 21 0.00072 32.2 4.9 51 595-648 14-75 (172)
404 4eyt_A Telomerase associated p 36.9 1.5E+02 0.0052 23.2 7.7 56 183-246 11-66 (129)
405 2pk2_A Cyclin-T1, protein TAT; 29.6 11 0.00039 38.6 0.0 7 401-407 230-236 (358)
406 3lpe_A Putative transcription 23.5 2.7E+02 0.0093 21.9 7.6 63 115-206 28-91 (92)
407 3j21_T 50S ribosomal protein L 20.6 2.4E+02 0.0083 22.1 6.2 59 594-655 23-83 (86)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.5e-35 Score=301.71 Aligned_cols=248 Identities=14% Similarity=0.199 Sum_probs=202.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|+.||+|.+|+|++++. .++|||||+|.+.++|.+| + .+++..+.|+.|.|.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A----~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAA----I-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHH----H-TTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHH----H-HhCCcEeCCcEEEEE
Confidence 44555555556999999999999999999999999875 3689999999999999997 6 689999999999998
Q ss_pred hhhccCCeeEecCCCccCCHHHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 179 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
++ ..++|||+|||+.+++++|+++|++|| .|..|.++.+.. +.++|||||+|.+.++|.+|++.+ +..+.|+.|.
T Consensus 114 ~~--~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 114 HL--TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp EC--CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EC--CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 76 468999999999999999999999999 999999998876 788999999999999999999965 7899999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy15852 257 VKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPP 336 (661)
Q Consensus 257 V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (661)
|.++.++...... .
T Consensus 191 v~~a~~~~~~~~~------------------------------------------------------------------~ 204 (292)
T 2ghp_A 191 TKVSNPLEKSKRT------------------------------------------------------------------D 204 (292)
T ss_dssp EEECCCC-------------------------------------------------------------------------
T ss_pred EEECCCCcccccc------------------------------------------------------------------c
Confidence 9999865432000 0
Q ss_pred CcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCC-cCccchhhhhhccCcc
Q psy15852 337 LAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPS-IRELEIPEAFLTKTTT 415 (661)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-~~~~~l~~~f~~~~~~ 415 (661)
. ......++++.++.+. +++++|+++|..|
T Consensus 205 ~----------------------------------------------~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~--- 235 (292)
T 2ghp_A 205 S----------------------------------------------ATLEGREIMIRNLSTELLDENLLRESFEGF--- 235 (292)
T ss_dssp ------------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG---
T ss_pred c----------------------------------------------cCCCCceEEEECCCcccCCHHHHHHHHhcc---
Confidence 0 0001234566666677 8999999999888
Q ss_pred cccCCcccchhhcccccccchhhccCCceeEEeeeccccc-CCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecC
Q psy15852 416 VPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKS-KSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494 (661)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~-~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a 494 (661)
|.|..+.++.+.. ++.++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 236 ---------------------------G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 236 ---------------------------GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 288 (292)
T ss_dssp ---------------------------SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred ---------------------------CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEe
Confidence 7799999999877 689999999999999999999977778899999999999
Q ss_pred CCCC
Q psy15852 495 TPKP 498 (661)
Q Consensus 495 ~~~~ 498 (661)
.+++
T Consensus 289 ~~k~ 292 (292)
T 2ghp_A 289 DKKP 292 (292)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8863
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-34 Score=298.97 Aligned_cols=243 Identities=13% Similarity=0.201 Sum_probs=207.1
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+..++++.++++++++++|+++|++|| |.+|++ ++++|||||+|.++++|.+| +..+++..+.|++|.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A----~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAA----INAFHQSRLRERELSV 89 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHH----HHHcCCCeeCCeEEEE
Confidence 344555555555999999999999999 999988 45789999999999999999 8899999999999999
Q ss_pred hhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 178 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
.++. ..++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.+ +..+.|+.|.
T Consensus 90 ~~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 90 QLQP-TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp EECC-CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EecC-CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 8864 4579999999999999999999999999999999999989999999999999999999999765 7899999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy15852 257 VKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPP 336 (661)
Q Consensus 257 V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (661)
|.++.++......
T Consensus 169 v~~a~~~~~~~~~------------------------------------------------------------------- 181 (284)
T 3smz_A 169 VHWTDAGQLTPAL------------------------------------------------------------------- 181 (284)
T ss_dssp EEECCGGGCCTTT-------------------------------------------------------------------
T ss_pred EEECCCCCCCccc-------------------------------------------------------------------
Confidence 9998764321000
Q ss_pred CcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCc-CccchhhhhhccCcc
Q psy15852 337 LAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSI-RELEIPEAFLTKTTT 415 (661)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~-~~~~l~~~f~~~~~~ 415 (661)
.-..++++.++.+.+ ++++|+++|+.|
T Consensus 182 -------------------------------------------------~~~~~l~v~nlp~~~~~~~~l~~~f~~~--- 209 (284)
T 3smz_A 182 -------------------------------------------------LHSRCLCVDRLPPGFNDVDALCRALSAV--- 209 (284)
T ss_dssp -------------------------------------------------TSCSEEEEECCCTTCCCHHHHHHHTCSS---
T ss_pred -------------------------------------------------CCccEEEEecCCcccCCHHHHHHHhhCC---
Confidence 001234455444554 889999999888
Q ss_pred cccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecC
Q psy15852 416 VPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKA 494 (661)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a 494 (661)
|.|..+.++.+. +++++|||||+|.+.++|.+|+. +++..++|+.|.|.++
T Consensus 210 ---------------------------G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 210 ---------------------------HSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp ---------------------------SCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ---------------------------CCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 779999998876 78999999999999999999995 7778899999999999
Q ss_pred CCCCC
Q psy15852 495 TPKPE 499 (661)
Q Consensus 495 ~~~~~ 499 (661)
.++..
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 88754
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.2e-34 Score=294.40 Aligned_cols=228 Identities=13% Similarity=0.153 Sum_probs=195.5
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
....++|||+|||+++++++|+++|++|| |.+|.+ ++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34568999999999999999999999999 999988 556899999999999999999875 6889999999988
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy15852 260 ATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAE 339 (661)
Q Consensus 260 a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (661)
+.+.
T Consensus 92 ~~~~---------------------------------------------------------------------------- 95 (284)
T 3smz_A 92 QPTD---------------------------------------------------------------------------- 95 (284)
T ss_dssp CCCS----------------------------------------------------------------------------
T ss_pred cCCC----------------------------------------------------------------------------
Confidence 5421
Q ss_pred cCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccC
Q psy15852 340 VDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMT 419 (661)
Q Consensus 340 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~ 419 (661)
..+++.++.+.+++++|+++|..+
T Consensus 96 -------------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~------- 119 (284)
T 3smz_A 96 -------------------------------------------------ALLCVANLPPSLTQQQFEELVRPF------- 119 (284)
T ss_dssp -------------------------------------------------CEEEEESCCTTCCHHHHHHHHGGG-------
T ss_pred -------------------------------------------------CEEEEcCCCCcCCHHHHHHHHHhc-------
Confidence 123444444558899999999888
Q ss_pred CcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHH-hCCCCcCCCcEEEEecCCCCC
Q psy15852 420 TTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPKP 498 (661)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai-~~~~~~l~g~~i~v~~a~~~~ 498 (661)
|.|..+.++.+..+++++|||||+|.+.++|.+|+ ..++..++|+.|.|.++.+..
T Consensus 120 -----------------------G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 120 -----------------------GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp -----------------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred -----------------------CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 77999999999999999999999999999999999 677788999999998887541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCccccc
Q psy15852 499 EPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLF 578 (661)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 578 (661)
...
T Consensus 177 ~~~----------------------------------------------------------------------------- 179 (284)
T 3smz_A 177 LTP----------------------------------------------------------------------------- 179 (284)
T ss_dssp CCT-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCCCccccccccCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 579 DQNLRTHYFYIVEAKNKMVSHPGIVDK-ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 579 ~~~~~~~~~~~~~~~~~l~v~nlp~~~-te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
.....++|||+|||+++ |+++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|.+|+..++.
T Consensus 180 ----------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 180 ----------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp ----------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred ----------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 00135789999999995 999999999999999999999997 599999999999999999999998665
Q ss_pred c
Q psy15852 658 F 658 (661)
Q Consensus 658 ~ 658 (661)
.
T Consensus 249 ~ 249 (284)
T 3smz_A 249 L 249 (284)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.5e-34 Score=297.25 Aligned_cols=234 Identities=16% Similarity=0.205 Sum_probs=189.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||+++++++|+++|++||+|.+|.++++..+ ++|||||+|.+.++|.+|++..+..+.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 44589999999999999999999999999999999988743 5899999999999999999755789999999998863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy15852 262 PKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVD 341 (661)
Q Consensus 262 ~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (661)
..
T Consensus 117 ~~------------------------------------------------------------------------------ 118 (292)
T 2ghp_A 117 EC------------------------------------------------------------------------------ 118 (292)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCc
Q psy15852 342 VTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTT 421 (661)
Q Consensus 342 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~ 421 (661)
.+++.++.+.+++++|+++|..+
T Consensus 119 ------------------------------------------------~l~v~nlp~~~t~~~l~~~f~~~--------- 141 (292)
T 2ghp_A 119 ------------------------------------------------TLWMTNFPPSYTQRNIRDLLQDI--------- 141 (292)
T ss_dssp ------------------------------------------------EEEEECCCTTCCHHHHHHHHHHT---------
T ss_pred ------------------------------------------------EEEEECCCCCCCHHHHHHHHHHh---------
Confidence 23344444558899999999888
Q ss_pred ccchhhcccccccchhhccCCc-eeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCCCCC
Q psy15852 422 EHMVLVTGTDMMHMEVTEAVPM-EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATPKPE 499 (661)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~G-~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~~~ 499 (661)
| +|..+.++.+.. ++++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.+...
T Consensus 142 ---------------------G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 142 ---------------------NVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp ---------------------TCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred ---------------------CCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 7 799999998876 7889999999999999999996 778899999999998886532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCccccccccccCCCCCcccCCCcccccc
Q psy15852 500 PFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFD 579 (661)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 579 (661)
....
T Consensus 200 ~~~~---------------------------------------------------------------------------- 203 (292)
T 2ghp_A 200 SKRT---------------------------------------------------------------------------- 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2100
Q ss_pred CCCCccccccccCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 580 QNLRTHYFYIVEAKNKMVSHPGIVD-KITEELKEHFSKYGEIENVTLKSDPN-TGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~v~nlp~~-~te~dL~~~F~~~G~I~~v~i~~d~~-tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
.......++|||+|||++ +|+++|+++|++||.|.+|+|++++. ||+++|||||+|.+.++|.+|+ .+|.
T Consensus 204 -------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g 275 (292)
T 2ghp_A 204 -------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR 275 (292)
T ss_dssp ----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT
T ss_pred -------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC
Confidence 001123578999999999 99999999999999999999999887 7999999999999999999999 7765
Q ss_pred c
Q psy15852 658 F 658 (661)
Q Consensus 658 ~ 658 (661)
.
T Consensus 276 ~ 276 (292)
T 2ghp_A 276 S 276 (292)
T ss_dssp E
T ss_pred C
Confidence 4
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.7e-30 Score=249.52 Aligned_cols=164 Identities=27% Similarity=0.541 Sum_probs=144.6
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+| + ..++..+.|+.|.|.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----~-~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA----M-NARPHKVDGRVVEPK 87 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----H-HTCSCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHH----H-hcCCCEECCEEeeee
Confidence 34555555555999999999999999999999999999999999999999999999997 5 458999999999998
Q ss_pred hhhcc-----------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC
Q psy15852 179 KAKAK-----------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK 247 (661)
Q Consensus 179 ~~~~~-----------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~ 247 (661)
++.+. .++|||+|||+++++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~ 167 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 167 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCC
Confidence 87543 2789999999999999999999999999999999998889999999999999999999999888
Q ss_pred CccCCeEEEEEeccCCCCCC
Q psy15852 248 QKINDKEVDVKKATPKPEPF 267 (661)
Q Consensus 248 ~~~~g~~i~V~~a~~k~~~~ 267 (661)
..++|+.|.|.++.++.+..
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEETTEECEEEECC------
T ss_pred cEECCEEEEEEecCChhHhc
Confidence 99999999999999987653
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.7e-29 Score=247.03 Aligned_cols=162 Identities=23% Similarity=0.352 Sum_probs=146.4
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+..+|+|.+|++++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++| +..+++..+.|+.|.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A----i~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA----LDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHH----HHHhhhhhcCCccccc
Confidence 445566666666999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred hhhhcc-------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCc
Q psy15852 178 KKAKAK-------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQK 249 (661)
Q Consensus 178 ~~~~~~-------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~ 249 (661)
.++... .++|||+|||+.+++++|+++|++||.|..|+|+++. +.++|||||+|.+.++|.+|++.+ +..
T Consensus 90 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 90 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 776543 3789999999999999999999999999999999875 457999999999999999999876 789
Q ss_pred cCCeEEEEEeccCCCC
Q psy15852 250 INDKEVDVKKATPKPE 265 (661)
Q Consensus 250 ~~g~~i~V~~a~~k~~ 265 (661)
|+|++|.|.++.++.+
T Consensus 168 ~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKE 183 (213)
T ss_dssp ETTEECEEEECCCHHH
T ss_pred ECCEEEEEEEcCCCcc
Confidence 9999999999987653
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.6e-29 Score=237.04 Aligned_cols=159 Identities=33% Similarity=0.664 Sum_probs=143.0
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|++++.+|+++|||||+|.++++|++| +. +++.+.|+.|.+.+
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A----~~--~~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV----VK--TQHILDGKVIDPKR 77 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHH----HH--SCCEETTEECCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHH----Hh--cccccCCeEccccc
Confidence 3444444555999999999999999999999999999999999999999999999998 55 36789999999887
Q ss_pred hhc-----cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeE
Q psy15852 180 AKA-----KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 254 (661)
Q Consensus 180 ~~~-----~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~ 254 (661)
+.+ ..++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++..+..++|++
T Consensus 78 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 78 AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 653 357999999999999999999999999999999999988899999999999999999999996578999999
Q ss_pred EEEEeccCCC
Q psy15852 255 VDVKKATPKP 264 (661)
Q Consensus 255 i~V~~a~~k~ 264 (661)
|.|.++.+++
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999998763
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.1e-28 Score=241.02 Aligned_cols=164 Identities=20% Similarity=0.392 Sum_probs=146.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+| +..+++..+.|+.|.|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA----LEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHH----HHHHSSCCCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHH----HHHccCCeeCCeeEEEe
Confidence 34566665666999999999999999999999999998899999999999999999998 88899999999999997
Q ss_pred hhhcc----------------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q psy15852 179 KAKAK----------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242 (661)
Q Consensus 179 ~~~~~----------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 242 (661)
++... .++|||+|||.++++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 65432 37999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhC-CCccCCeEEEEEeccCCCCC
Q psy15852 243 LKNP-KQKINDKEVDVKKATPKPEP 266 (661)
Q Consensus 243 l~~~-~~~~~g~~i~V~~a~~k~~~ 266 (661)
++.+ +..|+|+.|.|.++.++..+
T Consensus 184 ~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 184 VSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHccCCEeCCcEEEEEEecCCCCC
Confidence 9975 78999999999999987654
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=229.59 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=143.6
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++++.++++++++++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|.+| +..+++..+.|+.|.|.++
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A----~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIA----LQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHH----HHHcCCCccCCCeeEEEEc
Confidence 455555556999999999999999999999999875 78999999999999999999 8899999999999999887
Q ss_pred hcc-------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC
Q psy15852 181 KAK-------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND 252 (661)
Q Consensus 181 ~~~-------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g 252 (661)
.+. .++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.+ +..++|
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 544 368999999999999999999999999999999999889999999999999999999999975 789999
Q ss_pred eEEEEEeccC
Q psy15852 253 KEVDVKKATP 262 (661)
Q Consensus 253 ~~i~V~~a~~ 262 (661)
++|.|.++.+
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999863
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.4e-28 Score=230.49 Aligned_cols=157 Identities=18% Similarity=0.348 Sum_probs=144.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|++++++.+|+++|||||+|.++++|++| +..+++..+.|++|.|.+
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a----~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA----IKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHH----HHhcCCCEeCCcEEEEEe
Confidence 4555555556999999999999999999999999988999999999999999999998 888999999999999998
Q ss_pred hhcc-----CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC-
Q psy15852 180 AKAK-----SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND- 252 (661)
Q Consensus 180 ~~~~-----~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g- 252 (661)
+.+. .++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|++.+ +..+.|
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 8653 479999999999999999999999999999999999888999999999999999999999976 678877
Q ss_pred -eEEEEEec
Q psy15852 253 -KEVDVKKA 260 (661)
Q Consensus 253 -~~i~V~~a 260 (661)
++|.|.+|
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 99999886
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.3e-28 Score=228.37 Aligned_cols=157 Identities=26% Similarity=0.423 Sum_probs=143.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|++++++.+|+++|||||+|.++++|++| +..+++..+.|++|.|.+
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a----~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA----INTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHH----HHHcCCCccCCceEEEEe
Confidence 4555555556999999999999999999999999998899999999999999999999 888999999999999988
Q ss_pred hhcc-----CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe
Q psy15852 180 AKAK-----SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK 253 (661)
Q Consensus 180 ~~~~-----~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~ 253 (661)
+.+. .++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.+ +..+.|+
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 7654 378999999999999999999999999999999999888999999999999999999999976 6889996
Q ss_pred E--EEEEec
Q psy15852 254 E--VDVKKA 260 (661)
Q Consensus 254 ~--i~V~~a 260 (661)
. |.|.||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 4 888875
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=7e-27 Score=221.92 Aligned_cols=157 Identities=22% Similarity=0.344 Sum_probs=136.2
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCC--CcccEEEEEEeehhhHHHhhHHHHHHhCCeeec---cee
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTG--RSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN---NKK 174 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg--~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~---g~~ 174 (661)
.++++.++++++++++|+++|++||+|.+|+|++++.++ +++|||||+|.++++|++| +..+++..+. ++.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA----QNALHNMKVLPGMHHP 79 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHH----HHHHTTTCCCTTCSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHH----HHHhcCcEEccCCccc
Confidence 445555555699999999999999999999999998876 8999999999999999999 8889987775 566
Q ss_pred ehhhhhhcc------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-C
Q psy15852 175 IEAKKAKAK------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-K 247 (661)
Q Consensus 175 i~v~~~~~~------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~ 247 (661)
+.+.++.+. .++|||+|||+.+++++|+++|++||.|.+|.++++.. +.++|||||+|.+.++|.+|++.+ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 80 IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp CEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 666655433 37899999999999999999999999999999999864 899999999999999999999886 4
Q ss_pred CccC---CeEEEEEecc
Q psy15852 248 QKIN---DKEVDVKKAT 261 (661)
Q Consensus 248 ~~~~---g~~i~V~~a~ 261 (661)
..+. +++|.|.+|.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 4444 4999999873
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2.5e-26 Score=222.48 Aligned_cols=178 Identities=22% Similarity=0.372 Sum_probs=145.0
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|.++.+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 34799999999999999999999999999999999999999999999999999999999999988999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
+...... ..
T Consensus 92 ~~~~~~~-------------------------------------------------------------------~~---- 100 (196)
T 1l3k_A 92 REDSQRP-------------------------------------------------------------------GA---- 100 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------cc----
Confidence 5421000 00
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTE 422 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~ 422 (661)
......+++.++.+.+++++|+++|+.|
T Consensus 101 ------------------------------------------~~~~~~l~V~nLp~~~t~~~l~~~F~~~---------- 128 (196)
T 1l3k_A 101 ------------------------------------------HLTVKKIFVGGIKEDTEEHHLRDYFEQY---------- 128 (196)
T ss_dssp --------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTT----------
T ss_pred ------------------------------------------CCCcceEEEeCCCCCCCHHHHHHHHhcC----------
Confidence 0001234555555569999999999888
Q ss_pred cchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCCCCCCC
Q psy15852 423 HMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFG 502 (661)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~~~~~~ 502 (661)
|.|..+.++.+..+++++|||||+|.+.++|.+|+..++..++|+.|.|.++.++.++..
T Consensus 129 --------------------G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 129 --------------------GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp --------------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-------
T ss_pred --------------------CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 789999999999999999999999999999999998888999999999999999877654
Q ss_pred C
Q psy15852 503 V 503 (661)
Q Consensus 503 ~ 503 (661)
.
T Consensus 189 ~ 189 (196)
T 1l3k_A 189 A 189 (196)
T ss_dssp -
T ss_pred c
Confidence 3
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=5.1e-26 Score=215.48 Aligned_cols=152 Identities=18% Similarity=0.370 Sum_probs=136.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCC
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKY----G-------EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN 167 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~ 167 (661)
.+++++.++++++++++|+++|++| | +|.++++.+ ++|||||+|.++++|++| + .+++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A----~-~~~~ 72 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQA----M-AFDG 72 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHH----G-GGTT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHH----H-HhCC
Confidence 3556666666699999999999999 6 777777754 478999999999999998 7 8999
Q ss_pred eeecceeehhhhhhcc-----CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHH
Q psy15852 168 HVINNKKIEAKKAKAK-----SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242 (661)
Q Consensus 168 ~~i~g~~i~v~~~~~~-----~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 242 (661)
..+.|++|.|.++... .++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|
T Consensus 73 ~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp CEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred cEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999999987654 47999999999999999999999999999999999988899999999999999999999
Q ss_pred HHhC-CCccCCeEEEEEecc
Q psy15852 243 LKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 243 l~~~-~~~~~g~~i~V~~a~ 261 (661)
++.+ +..++|++|.|.+|.
T Consensus 153 ~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHcCCCEECCeEEEEEeCC
Confidence 9975 789999999999974
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.6e-26 Score=219.81 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=134.4
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||.|.. .++.+..+++++|||||+|.++++|.+| + .+++..+.|++|.|.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A----~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKA----L-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHH----H-HGGGEEETTEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHH----H-hcCCCEeCCeEEEEe
Confidence 344455555559999999999999998776 3444556789999999999999999998 6 699999999999999
Q ss_pred hhhcc-------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc
Q psy15852 179 KAKAK-------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI 250 (661)
Q Consensus 179 ~~~~~-------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~ 250 (661)
++.++ .++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.+ +..+
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 88753 3789999999999999999999999998776 445889999999999999999999975 6899
Q ss_pred CCeEEEEEeccCCC
Q psy15852 251 NDKEVDVKKATPKP 264 (661)
Q Consensus 251 ~g~~i~V~~a~~k~ 264 (661)
.|+.|.|.++.+++
T Consensus 162 ~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 162 DGRSVSLYYTGEKG 175 (175)
T ss_dssp TTEEEEEEECSSCC
T ss_pred CCeEEEEEecCCCC
Confidence 99999999998763
No 16
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=4.4e-25 Score=207.66 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
+++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999999999999999999999988999999999999999999999864 6889999999887653
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.7e-25 Score=216.89 Aligned_cols=156 Identities=17% Similarity=0.364 Sum_probs=137.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCC
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKY----G-------EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN 167 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~ 167 (661)
.+++++.++++++++++|+++|++| | .|.++.+ ++++|||||+|.++++|++| + .+++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~A----l-~l~g 72 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQA----M-AFDG 72 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHH----G-GGTT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHH----H-HhcC
Confidence 3455666666699999999999999 4 5666655 45689999999999999998 7 8999
Q ss_pred eeecceeehhhhhhc-------------------------cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC
Q psy15852 168 HVINNKKIEAKKAKA-------------------------KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222 (661)
Q Consensus 168 ~~i~g~~i~v~~~~~-------------------------~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 222 (661)
..+.|++|.|.++.. ..++|||+|||..+++++|+++|++||.|..|.+++++.+
T Consensus 73 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred CEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 999999999988753 2379999999999999999999999999999999999888
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCC
Q psy15852 223 SQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 223 g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~ 265 (661)
+.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999975 7899999999999988653
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=3.6e-25 Score=215.60 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=128.6
Q ss_pred CcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++|.+|+ +.+++++|+++|++||.|.+|+|+++ ++|||||+|.++++|++| +..+|+..+.|++|.|.
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~A----i~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRA----ITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHH----HHHhCCCEECCceEEEE
Confidence 344444555 38999999999999999999999875 379999999999999999 99999999999999998
Q ss_pred hhhc------------------------------------------cCCeeEecCCCccCCHHHHHHHHhcCCCe--EEE
Q psy15852 179 KAKA------------------------------------------KSGKIFVGGLSPEMKDEEIKAHFAQFGNI--IET 214 (661)
Q Consensus 179 ~~~~------------------------------------------~~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~v 214 (661)
+++. +.++|||+|||+.+++++|+++|++||.| .++
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v 155 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSV 155 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 7531 12469999999999999999999999999 899
Q ss_pred EeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe----EEEEEec
Q psy15852 215 EMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK----EVDVKKA 260 (661)
Q Consensus 215 ~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~----~i~V~~a 260 (661)
+++.+. +.++|||||+|.+.++|.+||..+ +..+.|+ ++.|++|
T Consensus 156 ~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 998775 556799999999999999999987 5677775 5777765
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=1.6e-25 Score=210.89 Aligned_cols=164 Identities=25% Similarity=0.512 Sum_probs=143.5
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
+++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++. .+.++|+.|.|.++.++
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccch
Confidence 47899999999999999999999999999999999998999999999999999999999996 57899999999887643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCC
Q psy15852 264 PEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVT 343 (661)
Q Consensus 264 ~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (661)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 2cjk_A 82 DEQ----------------------------------------------------------------------------- 84 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCccc
Q psy15852 344 GVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEH 423 (661)
Q Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~ 423 (661)
.....+++.++.+.+++++|+++|+.|
T Consensus 85 ------------------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~----------- 111 (167)
T 2cjk_A 85 ------------------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQW----------- 111 (167)
T ss_dssp ------------------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTT-----------
T ss_pred ------------------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhC-----------
Confidence 001234455555568999999999888
Q ss_pred chhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHhCCCCcCCCcEEEEecCCCC
Q psy15852 424 MVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497 (661)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~~~~~~l~g~~i~v~~a~~~ 497 (661)
|.|..+.++.+..+++++|||||+|.+.++|++|+.+++..++|+.|.|.+|.++
T Consensus 112 -------------------G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 112 -------------------GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -------------------SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred -------------------ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 7799999999999999999999999999999999998778999999999999876
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1.9e-24 Score=221.91 Aligned_cols=152 Identities=20% Similarity=0.311 Sum_probs=134.2
Q ss_pred CCCcEEEEcCCCcCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 98 AKNKMVSHPGIVHKITEELK----EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~----~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
+.++|+|.++++++++++|+ ++|++||.|.+|+|++ ++++||||||+|.+.++|.+| +..+++..|.|+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~ 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNA----LRSMQGFPFYDK 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHH----HHHhcCCeeCCc
Confidence 34555555555699999976 9999999999999986 588999999999999999999 889999999999
Q ss_pred eehhhhhhcc----------------------------------------------------------------------
Q psy15852 174 KIEAKKAKAK---------------------------------------------------------------------- 183 (661)
Q Consensus 174 ~i~v~~~~~~---------------------------------------------------------------------- 183 (661)
.|.|.++...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999776432
Q ss_pred ----------------------------------------------CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEec
Q psy15852 184 ----------------------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP 217 (661)
Q Consensus 184 ----------------------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~ 217 (661)
.++|||+|||..+++++|+++|++||.|.+|+++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 2569999999999999999999999999999998
Q ss_pred cCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC-CeEEEEEecc
Q psy15852 218 YDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN-DKEVDVKKAT 261 (661)
Q Consensus 218 ~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~-g~~i~V~~a~ 261 (661)
.++ +|||||+|.+.++|.+|++.+ +..+. |+.|.|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 653 689999999999999999987 67888 9999999986
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=2.1e-24 Score=204.72 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
.++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|++.+|.
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999999964 99999999999999999999998774
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.6e-24 Score=215.42 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=135.3
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
...++++.++++ ++++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++| +..+++..+.|+.|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~A----i~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLA----MSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHH----HHHHTTCBCSSSBCE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHH----HHHhCCCeECCeEEE
Confidence 345666666667 89999999999999999999999874 78999999999999998 888999999999999
Q ss_pred hhhhhcc----------------------------------------CCeeEecCCCccCCHHHHHHHHhcCC-CeEEEE
Q psy15852 177 AKKAKAK----------------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETE 215 (661)
Q Consensus 177 v~~~~~~----------------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~ 215 (661)
|.++... .++|||+|||..+++++|+++|++|| .|..|.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9877532 36799999999999999999999999 999999
Q ss_pred eccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC-CeEEEEEeccCC
Q psy15852 216 MPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN-DKEVDVKKATPK 263 (661)
Q Consensus 216 i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~-g~~i~V~~a~~k 263 (661)
++.+ .+|||||+|.+.++|.+|++.+ +..+. |+.|.|.|+.++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9653 3789999999999999999976 68888 999999999864
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=1.6e-24 Score=212.90 Aligned_cols=168 Identities=17% Similarity=0.279 Sum_probs=141.9
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+|++.+ +..+.|+.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999886 578999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy15852 262 PKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVD 341 (661)
Q Consensus 262 ~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (661)
......
T Consensus 94 ~~~~~~-------------------------------------------------------------------------- 99 (213)
T 4f02_A 94 RDPSLR-------------------------------------------------------------------------- 99 (213)
T ss_dssp CCTHHH--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 532100
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCc
Q psy15852 342 VTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTT 421 (661)
Q Consensus 342 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~ 421 (661)
. .-...++|.++.+.+++++|+++|..|
T Consensus 100 ------------------------------~-------------~~~~~l~v~nl~~~~t~~~l~~~F~~~--------- 127 (213)
T 4f02_A 100 ------------------------------K-------------SGVGNIFIKNLDKSIDNKALYDTFSAF--------- 127 (213)
T ss_dssp ------------------------------H-------------HCTTEEEEESCCTTCCHHHHHHHHGGG---------
T ss_pred ------------------------------c-------------cccccceECCcccccHHHHHHHHHhhc---------
Confidence 0 001234555555569999999999888
Q ss_pred ccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCCCCC
Q psy15852 422 EHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATPKPE 499 (661)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~~~ 499 (661)
|+|..+.++.|. +.++|||||+|.+.++|++|+. +++..|+|+.|.|.+|.++.+
T Consensus 128 ---------------------G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 128 ---------------------GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp ---------------------SCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred ---------------------CCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 789999999875 3478999999999999999994 677899999999999987643
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=1.6e-24 Score=210.41 Aligned_cols=150 Identities=14% Similarity=0.249 Sum_probs=133.9
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.++++.++++ ++++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A----~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLA----MSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHH----HHHHTTCCCSSCCCEEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHH----HHHhCCCeecCeEEEEE
Confidence 4566666666 89999999999999999999999874 78999999999999998 88899999999999998
Q ss_pred hhhcc----------------------------------------CCeeEecCCCccCCHHHHHHHHhcCC-CeEEEEec
Q psy15852 179 KAKAK----------------------------------------SGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMP 217 (661)
Q Consensus 179 ~~~~~----------------------------------------~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~ 217 (661)
++... .++|||+|||..+++++|+++|++|| .|..|.++
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 76532 46799999999999999999999999 99999997
Q ss_pred cCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC-CeEEEEEeccCC
Q psy15852 218 YDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN-DKEVDVKKATPK 263 (661)
Q Consensus 218 ~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~-g~~i~V~~a~~k 263 (661)
.+ .+|+|||+|.+.++|.+|++.+ +..+. |+.|.|.|+.++
T Consensus 155 ~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 54 2799999999999999999976 67888 999999999764
No 25
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=7e-24 Score=199.79 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=139.5
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||+++++++|+++|++||+|.+|.+++++.++.++|||||+|.+.++|.+|++.+ +..+.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 478999999999999999999999999999999999888999999999999999999999865 7899999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCC
Q psy15852 263 KPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDV 342 (661)
Q Consensus 263 k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (661)
+....
T Consensus 83 ~~~~~--------------------------------------------------------------------------- 87 (168)
T 1b7f_A 83 GGESI--------------------------------------------------------------------------- 87 (168)
T ss_dssp CSSTT---------------------------------------------------------------------------
T ss_pred CcccC---------------------------------------------------------------------------
Confidence 43210
Q ss_pred CccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCcc
Q psy15852 343 TGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTE 422 (661)
Q Consensus 343 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~ 422 (661)
-...+++.++.+.+++++|+++|+.+
T Consensus 88 --------------------------------------------~~~~l~v~nl~~~~t~~~l~~~f~~~---------- 113 (168)
T 1b7f_A 88 --------------------------------------------KDTNLYVTNLPRTITDDQLDTIFGKY---------- 113 (168)
T ss_dssp --------------------------------------------TTCEEEEESCCTTCCHHHHHHHHTSS----------
T ss_pred --------------------------------------------CCCCEEEeCCCCCCCHHHHHHhhhcC----------
Confidence 01123444444558999999999888
Q ss_pred cchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCC--cEEEEecC
Q psy15852 423 HMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKIND--KEVDVKKA 494 (661)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g--~~i~v~~a 494 (661)
|.|..+.++.+..+++++|||||+|.+.++|.+|+. +++..+.| ++|.|.+|
T Consensus 114 --------------------G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 114 --------------------GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp --------------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred --------------------CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 779999999999899999999999999999999995 67788877 89988765
No 26
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=4.4e-24 Score=216.56 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=137.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++|+++|+++|++||+|.+|+|.+ ++|||||+|.+.++|.+| +..+++..+.|+.|.|.+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A----~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIA----KAELDGTILKSRPLRIRF 92 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHH----HHHcCCcEECCceeEeee
Confidence 3455555555999999999999999999999965 368999999999999999 888999999999999999
Q ss_pred hhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-C-CccC---CeE
Q psy15852 180 AKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-K-QKIN---DKE 254 (661)
Q Consensus 180 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~-~~~~---g~~ 254 (661)
+.+ .++|||+|||+.+++++|+++|++||.|..|.++.+ .+|+++|||||+|.+.++|.+|+..+ + ..+. +++
T Consensus 93 a~~-~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 93 ATH-GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CCC-SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ccc-CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 875 569999999999999999999999999999999998 57999999999999999999999997 3 3444 899
Q ss_pred EEEEeccCCCC
Q psy15852 255 VDVKKATPKPE 265 (661)
Q Consensus 255 i~V~~a~~k~~ 265 (661)
|.|.++.+...
T Consensus 171 i~v~~~~~~~~ 181 (261)
T 3sde_A 171 VIVEPMEQFDD 181 (261)
T ss_dssp CEEEECCCEES
T ss_pred EEEeeccccCc
Confidence 99999987643
No 27
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.3e-24 Score=198.68 Aligned_cols=164 Identities=16% Similarity=0.275 Sum_probs=139.1
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||+|||.++++++|+++|++||+|.+|.+++++. ++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 778999999999999999999665 78999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCC
Q psy15852 264 PEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVT 343 (661)
Q Consensus 264 ~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (661)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (166)
T 3md3_A 80 QQSSS--------------------------------------------------------------------------- 84 (166)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 32100
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCCccc
Q psy15852 344 GVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEH 423 (661)
Q Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~~~~ 423 (661)
.-...+++.++.+.+++++|+++|+.|
T Consensus 85 ------------------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~----------- 111 (166)
T 3md3_A 85 ------------------------------------------DDTFNLFVGDLNVNVDDETLRNAFKDF----------- 111 (166)
T ss_dssp ------------------------------------------TTCEEEEEESCCTTCCHHHHHHHHTTS-----------
T ss_pred ------------------------------------------CCCceEEECCCCCCCCHHHHHHHHhcc-----------
Confidence 001134444444558999999999888
Q ss_pred chhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCC
Q psy15852 424 MVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATP 496 (661)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~ 496 (661)
|.|..+.++.+..++.++|||||+|.+.++|.+|+. +++..++|+.|.|.+|.+
T Consensus 112 -------------------G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 112 -------------------PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp -------------------TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred -------------------CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 779999999999999999999999999999999995 777889999999998863
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=2.4e-23 Score=202.69 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=69.3
Q ss_pred cCCeeEecCCC-ccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLS-PEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.+ +..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35789999999 89999999999999999999999865 3899999999999999999976 78999999999998
Q ss_pred cCC
Q psy15852 261 TPK 263 (661)
Q Consensus 261 ~~k 263 (661)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 753
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=1.6e-23 Score=205.98 Aligned_cols=181 Identities=18% Similarity=0.338 Sum_probs=145.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||.|.+|.++++..++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34589999999999999999999999999999999999888999999999999999999999965 78899999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15852 261 TPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEV 340 (661)
Q Consensus 261 ~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (661)
..+.... +.
T Consensus 106 ~~~~~~~--------------------------------------------------------------------~~--- 114 (216)
T 2qfj_A 106 SNIGQAQ--------------------------------------------------------------------PI--- 114 (216)
T ss_dssp SCCGGGH--------------------------------------------------------------------HH---
T ss_pred CCccccc--------------------------------------------------------------------hh---
Confidence 6432100 00
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCC
Q psy15852 341 DVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT 420 (661)
Q Consensus 341 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~ 420 (661)
...... -......+++.++.+.+++++|+++|+.|
T Consensus 115 ----------------------------~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-------- 149 (216)
T 2qfj_A 115 ----------------------------IDQLAE---------EARAFNRIYVASVHQDLSDDDIKSVFEAF-------- 149 (216)
T ss_dssp ----------------------------HHHHHH---------HHTTSCEEEEECCCTTCCHHHHHHHHTTS--------
T ss_pred ----------------------------hhhhhc---------ccCCCcEEEEeCCCCcCCHHHHHHHHhcc--------
Confidence 000000 00112345555555569999999999888
Q ss_pred cccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCCCCC
Q psy15852 421 TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATPKPE 499 (661)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~~~ 499 (661)
|+|..+.++.+..+++++|||||+|.+.++|.+|+. +++..++|+.|.|.++.+++.
T Consensus 150 ----------------------G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 150 ----------------------GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp ----------------------SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred ----------------------CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 789999999999999999999999999999999995 677899999999999988754
Q ss_pred C
Q psy15852 500 P 500 (661)
Q Consensus 500 ~ 500 (661)
.
T Consensus 208 ~ 208 (216)
T 2qfj_A 208 P 208 (216)
T ss_dssp T
T ss_pred C
Confidence 4
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=3.1e-22 Score=205.36 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=72.2
Q ss_pred ccCCeeEecCCCccCCHHHHH----HHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIK----AHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
...++|||+|||+++++++|+ ++|++||.|.+|.+++ +++++|||||+|.+.++|.+|++.+ +..+.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 446899999999999999977 8999999999999986 4788999999999999999999876 6889999999
Q ss_pred EEeccCCC
Q psy15852 257 VKKATPKP 264 (661)
Q Consensus 257 V~~a~~k~ 264 (661)
|.++..+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997544
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=3e-22 Score=203.06 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
++|||+|||+++|+++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|.+|+..+
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 36999999999999999999999999999999999 57999999999999999999999985
No 32
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.87 E-value=5.3e-22 Score=187.71 Aligned_cols=158 Identities=14% Similarity=0.245 Sum_probs=132.6
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcC----C-------CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQF----G-------NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 251 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~ 251 (661)
+.++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+...+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 35799999999999999999999999 7 78888874 4589999999999999999955578999
Q ss_pred CeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC
Q psy15852 252 DKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMV 331 (661)
Q Consensus 252 g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (661)
|+.|.|.++.......
T Consensus 77 g~~i~v~~~~~~~~~~---------------------------------------------------------------- 92 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLP---------------------------------------------------------------- 92 (172)
T ss_dssp TEECEEECCSSCCCCT----------------------------------------------------------------
T ss_pred CceeeecCCcccCCCC----------------------------------------------------------------
Confidence 9999999876432110
Q ss_pred CCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhc
Q psy15852 332 QATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLT 411 (661)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~ 411 (661)
-...+++.++.+.+++++|+++|+.
T Consensus 93 -------------------------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 93 -------------------------------------------------------GAHKLFIGGLPNYLNDDQVKELLTS 117 (172)
T ss_dssp -------------------------------------------------------TTTCEEEECCCTTCCHHHHHHHHHT
T ss_pred -------------------------------------------------------CCCEEEEEcCCCcCCHHHHHHHHHh
Confidence 0113444544455899999999988
Q ss_pred cCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEE
Q psy15852 412 KTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVD 490 (661)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~ 490 (661)
| |.|..+.++.+..+++++|||||+|.+.++|++|+. +++..++|+.|.
T Consensus 118 ~------------------------------G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 118 F------------------------------GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp T------------------------------SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred c------------------------------CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 8 779999999999999999999999999999999995 677889999999
Q ss_pred EecCC
Q psy15852 491 VKKAT 495 (661)
Q Consensus 491 v~~a~ 495 (661)
|.+|.
T Consensus 168 V~~As 172 (172)
T 2g4b_A 168 VQRAS 172 (172)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98874
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.86 E-value=7.9e-21 Score=188.67 Aligned_cols=79 Identities=13% Similarity=0.303 Sum_probs=71.5
Q ss_pred hccCCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEE
Q psy15852 181 KAKSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVK 258 (661)
Q Consensus 181 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~ 258 (661)
.+..++|||+|||+ ++++++|+++|++||.|.+|.+++++ +|||||+|.+.++|.+|++.+ +..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999 99999999999999999999999864 789999999999999999865 789999999999
Q ss_pred eccCCC
Q psy15852 259 KATPKP 264 (661)
Q Consensus 259 ~a~~k~ 264 (661)
++..+.
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 987653
No 34
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.86 E-value=2.2e-22 Score=191.12 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=132.5
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
....++|||+|||.++++++|+++|++||.+.. .++.+..++.++|||||+|.+.++|.+|++..+..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 345689999999999999999999999997766 3445556688999999999999999999975578999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15852 261 TPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEV 340 (661)
Q Consensus 261 ~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (661)
.++.....
T Consensus 89 ~~~~~~~~------------------------------------------------------------------------ 96 (175)
T 1fje_B 89 KGRDSKKV------------------------------------------------------------------------ 96 (175)
T ss_dssp CCSSCSTT------------------------------------------------------------------------
T ss_pred CCcccccc------------------------------------------------------------------------
Confidence 76432100
Q ss_pred CCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhccCcccccCC
Q psy15852 341 DVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT 420 (661)
Q Consensus 341 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~~~~~~~~~~ 420 (661)
.-...+++.++.+.+++++|+++|+.+
T Consensus 97 ---------------------------------------------~~~~~l~v~nlp~~~t~~~l~~~F~~~-------- 123 (175)
T 1fje_B 97 ---------------------------------------------RAARTLLAKNLSFNITEDELKEVFEDA-------- 123 (175)
T ss_dssp ---------------------------------------------GGGGEEEEESCCSSCCHHHHHHHCTTC--------
T ss_pred ---------------------------------------------ccCCEEEEeCCCCCCCHHHHHHHHHhc--------
Confidence 001234455444559999999999887
Q ss_pred cccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEEEecCCCC
Q psy15852 421 TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVDVKKATPK 497 (661)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~ 497 (661)
|+|..+ ..+++++|||||+|.+.++|.+|+. +++..++|+.|.|.++.++
T Consensus 124 ----------------------g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 124 ----------------------LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ----------------------SEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ----------------------CeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 667665 5678899999999999999999996 5778899999999999876
No 35
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=4.4e-21 Score=185.73 Aligned_cols=182 Identities=14% Similarity=0.238 Sum_probs=137.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcC----C-------CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQF----G-------NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 251 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~ 251 (661)
..++|||+|||+++++++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+..++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 35799999999999999999999999 5 6777776 45689999999999999999955578999
Q ss_pred CeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCC
Q psy15852 252 DKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGGILYKPLLFYELNELGISGRSLVCRTGPMV 331 (661)
Q Consensus 252 g~~i~V~~a~~k~~~~~~~~~~~~~g~~~g~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (661)
|+.|.|.++.+.......... + ....+.
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~----------------------------------~-----------------~~~~~~- 104 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSEN----------------------------------P-----------------SVYVPG- 104 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSC----------------------------------S-----------------SCCCTT-
T ss_pred CceEEEeCCCCCCCCCCCcCC----------------------------------C-----------------cCCCCC-
Confidence 999999998765432100000 0 000000
Q ss_pred CCCCCCcccCCCccEEEEecCCCCCCCCCCCCCCCCChhHHHhhhccccccccccccccccccCCCCCcCccchhhhhhc
Q psy15852 332 QATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLT 411 (661)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~l~~~f~~ 411 (661)
... .. -..-...+++.++.+.+++++|+++|..
T Consensus 105 -~~~---~~-------------------------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 105 -VVS---TV-------------------------------------------VPDSAHKLFIGGLPNYLNDDQVKELLTS 137 (198)
T ss_dssp -SSC---CC-------------------------------------------SSCCCCEEEEECCCTTCCHHHHHHHHHT
T ss_pred -Ccc---CC-------------------------------------------CCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 000 00 0001123455555556999999999988
Q ss_pred cCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeCChHHHHHHHh-CCCCcCCCcEEE
Q psy15852 412 KTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK-NPKQKINDKEVD 490 (661)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~~~e~A~~Ai~-~~~~~l~g~~i~ 490 (661)
| |.|..+.++.+..+++++|||||+|.+.++|++|+. +++..++|+.|.
T Consensus 138 ~------------------------------G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 138 F------------------------------GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp B------------------------------SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred c------------------------------CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 8 779999999999999999999999999999999996 677889999999
Q ss_pred EecCCCCCC
Q psy15852 491 VKKATPKPE 499 (661)
Q Consensus 491 v~~a~~~~~ 499 (661)
|.++.++..
T Consensus 188 v~~a~~~~~ 196 (198)
T 2yh0_A 188 VQRASVGAK 196 (198)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999987744
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=5.1e-20 Score=171.79 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=107.2
Q ss_pred EEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe-------eecceeehhh-----------hhhccCCeeEe
Q psy15852 128 NVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH-------VINNKKIEAK-----------KAKAKSGKIFV 189 (661)
Q Consensus 128 ~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~-------~i~g~~i~v~-----------~~~~~~~~lfV 189 (661)
+++|+.+.. +++|||||+|.++++|++| +..+++. .+.+...... ......++|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~a----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKV----FKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHH----HHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHH----HHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEE
Confidence 577888753 6999999999999999998 5444321 1111111110 11123479999
Q ss_pred cCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCC
Q psy15852 190 GGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 190 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~ 265 (661)
+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.++..
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999999999989999999999999999999999986 6789999999999987653
No 37
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.82 E-value=1e-19 Score=176.28 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=124.1
Q ss_pred cccccCCCC-CcCccchhhhhhccCcccccCCcccchhhcccccccchhhccCCceeEEeeecccccCCcccceEEEEeC
Q psy15852 390 NLLLCDNFP-SIRELEIPEAFLTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFE 468 (661)
Q Consensus 390 ~~~~~~~~p-~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~d~~~~~~~g~aFV~F~ 468 (661)
.+++.++.+ .+++++|+++|..| |.|..|.++.+. +|||||+|.
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~------------------------------G~i~~v~i~~~~-----~g~afV~f~ 49 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVY------------------------------GDVQRVKILFNK-----KENALVQMA 49 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTT------------------------------CCCSEEECSTTC-----SSCCEEECT
T ss_pred EEEEeCCCcccCCHHHHHHHHHhc------------------------------CCEEEEEEEeCC-----CCEEEEEEC
Confidence 466666666 69999999999988 779999998864 699999999
Q ss_pred ChHHHHHHHh-CCCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy15852 469 HESVVIDLLK-NPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYLQLWQFFD 547 (661)
Q Consensus 469 ~~e~A~~Ai~-~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~~~~~~~~~~~~~~~ 547 (661)
++++|++|+. +++..+.|+.|.|.++............... + ... . |.
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~-~--------~~~----------~-----~~------- 98 (198)
T 1qm9_A 50 DGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ-G--------LTK----------D-----YG------- 98 (198)
T ss_dssp TTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSS-S--------CEE----------E-----SS-------
T ss_pred CHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccc-c--------ccc----------c-----cc-------
Confidence 9999999995 7788999999999998865432110000000 0 000 0 00
Q ss_pred ccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEe
Q psy15852 548 WISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFSKYG-EIENVTLK 626 (661)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~F~~~G-~I~~v~i~ 626 (661)
.+... ....|. ...........++|||+|||+++++++|+++|++|| .|.+|+|+
T Consensus 99 --~~~~~-------r~~~~~---------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 99 --NSPLH-------RFKKPG---------------SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp --CCCTT-------SSSSCC---------------CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred --CCchh-------hccCcc---------------ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 00000 000000 000011123468999999999999999999999999 99999997
Q ss_pred ecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 627 SDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 627 ~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
.+ ++|+|||+|.+.++|.+|+..+|...
T Consensus 155 ~~-----~~g~afV~f~~~~~A~~A~~~l~g~~ 182 (198)
T 1qm9_A 155 QK-----DRKMALIQMGSVEEAVQALIDLHNHD 182 (198)
T ss_dssp ST-----TSSCEEEECSSHHHHHHHHHHHTSSC
T ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHhcCCc
Confidence 64 37899999999999999999877543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=6.5e-18 Score=157.48 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|.+|++.+|..
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999987654
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=3.7e-18 Score=150.05 Aligned_cols=94 Identities=18% Similarity=0.363 Sum_probs=68.6
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
+|||.+|++++++++|+++|++||+|.+|+|++++ +.+||||||+|.+.++|++| +..+++..|.|++|.|.++
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~A----i~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA----IEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHH----HHHHTTCEETTEECEEEES
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHH----HHHcCCCEECCEEEEEEEC
Confidence 45555555599999999999999999999999985 46899999999999999999 8899999999999999887
Q ss_pred hccC-------------CeeEecCCCccCCHHH
Q psy15852 181 KAKS-------------GKIFVGGLSPEMKDEE 200 (661)
Q Consensus 181 ~~~~-------------~~lfV~nLp~~~te~~ 200 (661)
.++. .+|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 6543 5799999999999863
No 40
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=9.8e-18 Score=155.90 Aligned_cols=97 Identities=23% Similarity=0.329 Sum_probs=81.4
Q ss_pred ecceeehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CC
Q psy15852 170 INNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQ 248 (661)
Q Consensus 170 i~g~~i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~ 248 (661)
+.+............++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+||+.+ +.
T Consensus 25 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 25 FRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp --------CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred cCCChhhhcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 33444444444556789999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred ccCCeEEEEEeccCCCCC
Q psy15852 249 KINDKEVDVKKATPKPEP 266 (661)
Q Consensus 249 ~~~g~~i~V~~a~~k~~~ 266 (661)
.|.|+.|.|.++.++...
T Consensus 105 ~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 105 RLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp EETTEECEEEEESCCCTT
T ss_pred EECCeEEEEEECCCCCCc
Confidence 999999999999876543
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=6.1e-18 Score=156.19 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=105.5
Q ss_pred CCcccEEEEEEeehhhHHHhhHHHHHHh-CCeeecceeehhhhhhc---------------------cCCeeEecCCCcc
Q psy15852 138 GRSRGFAFIVFKDTESLEKASVEDVIAE-GNHVINNKKIEAKKAKA---------------------KSGKIFVGGLSPE 195 (661)
Q Consensus 138 g~srG~afV~F~~~e~A~~A~~~~~~~~-~~~~i~g~~i~v~~~~~---------------------~~~~lfV~nLp~~ 195 (661)
...+|+++|+|.+.++|++| +..+ |+..+.| .+.+.++.. ..++|||+|||++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a----~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKV----FKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTT----HHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHH----HHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 46899999999999999999 8888 8999999 888877653 2379999999999
Q ss_pred CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCC
Q psy15852 196 MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264 (661)
Q Consensus 196 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~ 264 (661)
+++++|+++|++||.|.+|.++++ ++|||||+|.+.++|.+|+..+ +..+.|++|.|.++.++.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999876 5899999999999999999975 788999999999998764
No 42
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=7.2e-18 Score=182.20 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=106.1
Q ss_pred HHHHHhhcCCCeeEEEEe----eCC-CCCCcccEE--EEEEeehhhHHHhhHHHHHHhCCeeecce--------------
Q psy15852 115 ELKEHFSKYGEIENVTLK----SDP-NTGRSRGFA--FIVFKDTESLEKASVEDVIAEGNHVINNK-------------- 173 (661)
Q Consensus 115 ~L~~~F~~~G~I~~v~l~----~~~-~tg~srG~a--fV~F~~~e~A~~A~~~~~~~~~~~~i~g~-------------- 173 (661)
.|.++|.++|+|..|..+ .++ .+....|++ |+.|....++..+ +..++......+
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~----~~~e~~~~~~~~~~~~k~~~~~~~~~ 83 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPP----TRAETREERMERKRREKIERRQQEVE 83 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCccccccc----ccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999887333 222 112223333 8888776655443 111110000000
Q ss_pred -eeh-------hhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 174 -KIE-------AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 174 -~i~-------v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
.+. ........++|||+|||+.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+||+.
T Consensus 84 ~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 84 TELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred HhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 000 001112237999999999999999999999999999999999988999999999999999999999988
Q ss_pred C-CCccCCeEEEEEeccCCCC
Q psy15852 246 P-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 246 ~-~~~~~g~~i~V~~a~~k~~ 265 (661)
+ +..|.|+.|.|.++.++..
T Consensus 164 lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred cCCCEECCEEEEEEEeCCCCC
Confidence 6 6899999999999987654
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=139.49 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||+++|+++|+++|++||+|.+|++++++.+|.++|||||+|.+.++|.+|++.+ +..+.|++|.|.+|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 478999999999999999999999999999999999999999999999999999999999875 7899999999999975
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=137.36 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=76.4
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-C-CccCCeEEEEEecc
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-K-QKINDKEVDVKKAT 261 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~-~~~~g~~i~V~~a~ 261 (661)
++|||+|||+++|+++|+++|++|| +|.+|+|++++.++.++|||||+|.+.++|.+|++.+ + ..++|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999999999999999999999999999999986 3 47999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
+++..
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=136.64 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=72.6
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.|||+|+| ++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.++++|++| +..+|+..+.|++|.|.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A----i~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA----INTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHH----HHHhCCCEECCEEEEEE
Confidence 4455666555 999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhc
Q psy15852 179 KAKA 182 (661)
Q Consensus 179 ~~~~ 182 (661)
+++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9876
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-16 Score=135.80 Aligned_cols=85 Identities=26% Similarity=0.462 Sum_probs=79.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||+++++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.++..+.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 94 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEEST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcc
Confidence 34589999999999999999999999999999999999999999999999999999999999998779999999999998
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++..+
T Consensus 95 ~~~~~ 99 (116)
T 2cqd_A 95 LGAKP 99 (116)
T ss_dssp TTCCC
T ss_pred cCCCc
Confidence 76544
No 47
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=130.57 Aligned_cols=84 Identities=26% Similarity=0.431 Sum_probs=78.6
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999999999988999999999999999999999776 678999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 87 ~~~~~ 91 (99)
T 1whw_A 87 IKKEA 91 (99)
T ss_dssp CCSTT
T ss_pred CCccc
Confidence 87654
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=130.46 Aligned_cols=85 Identities=38% Similarity=0.610 Sum_probs=79.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||.++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++..+..++|+.|.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34589999999999999999999999999999999999999999999999999999999999966789999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 87654
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=134.43 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=72.7
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCC--eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-C----CccCCeEEE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGN--IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-K----QKINDKEVD 256 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~----~~~~g~~i~ 256 (661)
-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|++|++.+ + ..++||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 679999999999999999999999999999999986 3 259999999
Q ss_pred EEeccC
Q psy15852 257 VKKATP 262 (661)
Q Consensus 257 V~~a~~ 262 (661)
|.+|++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999875
No 50
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.4e-16 Score=129.95 Aligned_cols=84 Identities=20% Similarity=0.380 Sum_probs=78.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||.++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999965 78999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 88764
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=134.91 Aligned_cols=83 Identities=10% Similarity=0.152 Sum_probs=77.6
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+++++++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999976 68999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.4e-16 Score=129.93 Aligned_cols=84 Identities=25% Similarity=0.426 Sum_probs=78.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEE-EeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..++|||+|||.++++++|+++|++||.|..| .|++++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 99999889999999999999999999999976 68899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887643
No 53
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3e-16 Score=141.81 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=78.7
Q ss_pred EEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh----hhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEecc
Q psy15852 143 FAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA----KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 143 ~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v----~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
+.|++|.+...|..| +..+++....|+...- .......++|||+|||+++++++|+++|++||.|..|.|+.
T Consensus 6 ~~~~~~~~~~~~~~a----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSH----MASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ---------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhh----hhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 567777777778887 7777665554433211 11122347899999999999999999999999999999999
Q ss_pred CCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCCCC
Q psy15852 219 DKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k~~ 265 (661)
++.+++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.++..
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9888999999999999999999999986 6889999999999987654
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1e-15 Score=127.24 Aligned_cols=79 Identities=29% Similarity=0.630 Sum_probs=75.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|++.++..++|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4568999999999999999999999999999999999999999999999999999999999998888999999999875
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=6.8e-16 Score=137.92 Aligned_cols=84 Identities=19% Similarity=0.369 Sum_probs=78.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.+ +..|+|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 3579999999999999999999999999999999999989999999999999999999999875 789999999999998
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++..+
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 87654
No 56
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=138.93 Aligned_cols=84 Identities=15% Similarity=0.305 Sum_probs=78.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||.++++++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3489999999999999999999999999999999999989999999999999999999999986 678999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++..+
T Consensus 121 ~~~~~ 125 (139)
T 1u6f_A 121 SGHQR 125 (139)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=133.20 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=78.5
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.++..|+|+.|.|.++.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999778999999999999987
Q ss_pred CCC
Q psy15852 264 PEP 266 (661)
Q Consensus 264 ~~~ 266 (661)
...
T Consensus 107 ~~~ 109 (116)
T 1x4b_A 107 EES 109 (116)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 58
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.5e-16 Score=142.31 Aligned_cols=123 Identities=7% Similarity=0.132 Sum_probs=74.0
Q ss_pred ccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee--ehhhhhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEecc
Q psy15852 141 RGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK--IEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPY 218 (661)
Q Consensus 141 rG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~--i~v~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 218 (661)
+|+||.+|..++.+..|..+......+....... -.........++|||+|||+++++++|+++|++|| |.+|.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 3678888888888777622211111111111000 01112233457999999999999999999999999 67999999
Q ss_pred CCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy15852 219 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~~ 265 (661)
++. ++++|||||+|.+.++|++||+.++..|+|+.|.|.++.++..
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 986 9999999999999999999996557899999999999887653
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=130.58 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=79.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 44589999999999999999999999999999999999888999999999999999999999976 68999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987643
No 60
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=130.76 Aligned_cols=84 Identities=29% Similarity=0.508 Sum_probs=78.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||.++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++.++..++|+.|.|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 103 ~~~~ 106 (109)
T 2rs2_A 103 PRRA 106 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=126.62 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=74.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4578999999999999999999999999999999999888999999999999999999999975 789999999999998
Q ss_pred CC
Q psy15852 262 PK 263 (661)
Q Consensus 262 ~k 263 (661)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 62
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=9e-16 Score=141.58 Aligned_cols=123 Identities=16% Similarity=0.067 Sum_probs=92.5
Q ss_pred CCcccceEEEEeCChHHHHHHHhC--CCCcCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15852 456 KSQRKNFCFITFEHESVVIDLLKN--PKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGG 533 (661)
Q Consensus 456 ~~~~~g~aFV~F~~~e~A~~Ai~~--~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gg~~~~g~~ 533 (661)
..+.+|+++|+|.+.++|++|+.. ++..++| .+.+..+..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----------------------------- 58 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----------------------------- 58 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-----------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-----------------------------
Confidence 346689999999999999999944 4578899 99998776432110000
Q ss_pred CCCCCCccccccccccCCCccccccccccCCCCCcccCCCccccccCCCCccccccccCCCeEEEcCCCCCCCHHHHHHH
Q psy15852 534 YGELDYLQLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEH 613 (661)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~dL~~~ 613 (661)
.+. ............++|||+|||+++|+++|+++
T Consensus 59 -------------------------------~~~--------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~ 93 (150)
T 2i2y_A 59 -------------------------------HHH--------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERA 93 (150)
T ss_dssp -------------------------------SSC--------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHH
T ss_pred -------------------------------ccc--------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 000 00000011223689999999999999999999
Q ss_pred hhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 614 FSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 614 F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..+|..
T Consensus 94 F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 94 FGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp HHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred HHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999986 6899999999999999999976653
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=129.37 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=79.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999999999999999999999999999999999989999999999999999999999986 68999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 887653
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=130.33 Aligned_cols=85 Identities=25% Similarity=0.517 Sum_probs=78.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999775 68899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=129.88 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=78.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 34589999999999999999999999999999999999889999999999999999999999875 68899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=1.9e-15 Score=124.25 Aligned_cols=80 Identities=18% Similarity=0.395 Sum_probs=75.8
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
.+|||+|||+++++++|+++|++||+|.++.+++++.++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999999999889999999999999999999999975 78999999999999876
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=131.82 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+.++++|.+|++++++++|+++|++||+|.+|+|++|+.|+++||||||+|.+.++|++| +..+|+..+.|+.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A----i~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKET----VKNLHLTSVMGNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHH----HHHhCCCEECCeEEEE
Confidence 345566666666999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 87754
No 68
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=131.70 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=72.0
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCC-CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHh-CCeeecceeehh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE-GNHVINNKKIEA 177 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G-~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~-~~~~i~g~~i~v 177 (661)
+++++.+|++++||++|+++|++|| +|.+|+|++++.||++||||||+|.++++|++| +..+ ++..+.|++|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A----i~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW----MEANQHSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH----HHTTTTEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH----HHhcCCCeEECCEEEEE
Confidence 4566666666999999999999999 799999999999999999999999999999998 7665 567899999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9988764
No 69
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=3.5e-16 Score=154.46 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=75.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCC--CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFG--NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
..++|||+|||+++++++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+||+.+ +..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999999999999999999999999999999987 6899999999999
Q ss_pred ccCC
Q psy15852 260 ATPK 263 (661)
Q Consensus 260 a~~k 263 (661)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=130.65 Aligned_cols=84 Identities=30% Similarity=0.512 Sum_probs=77.6
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999988 8999999999999999999999986 68999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876643
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=128.19 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=78.9
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+. ++.++|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999995 67899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 987654
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=7e-15 Score=129.03 Aligned_cols=85 Identities=29% Similarity=0.489 Sum_probs=79.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||..+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++|++.+ +..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34579999999999999999999999999999999999888999999999999999999999986 68999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 987654
No 73
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=129.42 Aligned_cols=84 Identities=14% Similarity=0.267 Sum_probs=78.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999975 78999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87654
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=129.50 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=78.9
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-------CCccCCeE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-------KQKINDKE 254 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-------~~~~~g~~ 254 (661)
...++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.+ +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 34589999999999999999999999999999999999999999999999999999999999976 57899999
Q ss_pred EEEEeccCCCCC
Q psy15852 255 VDVKKATPKPEP 266 (661)
Q Consensus 255 i~V~~a~~k~~~ 266 (661)
|.|.++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987654
No 75
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=131.07 Aligned_cols=85 Identities=27% Similarity=0.562 Sum_probs=79.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||+.+++++|+++|++||+|..|.|++++.++.++|||||+|.+.++|++||+..+..|+|+.|.|.++.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 44589999999999999999999999999999999999989999999999999999999999997789999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 94 ~~~~~ 98 (105)
T 2dh8_A 94 PRGMQ 98 (105)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 76
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=127.55 Aligned_cols=85 Identities=18% Similarity=0.351 Sum_probs=77.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCC---CCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS---KSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
+..++|||+|||+++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|.+|++.+ +..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457999999999999999999999999999999998876 6689999999999999999999986 68999999999
Q ss_pred EeccCCCCC
Q psy15852 258 KKATPKPEP 266 (661)
Q Consensus 258 ~~a~~k~~~ 266 (661)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999887643
No 77
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.5e-15 Score=128.40 Aligned_cols=85 Identities=15% Similarity=0.318 Sum_probs=78.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccC-CCCCCcCcEEEEEeCCHHHHHHHHHhC--CCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD-KSKSQRKNFCFITFEHESVVIDLLKNP--KQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Al~~~--~~~~~g~~i~V~ 258 (661)
...++|||+|||..+++++|+++|++||.|..|.|+++ +.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34589999999999999999999999999999999998 778999999999999999999999986 689999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++.++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99987654
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.9e-15 Score=126.11 Aligned_cols=82 Identities=16% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
+++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999999999999999999999989999999999999999999999875 7899999999999988
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 79
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=127.34 Aligned_cols=84 Identities=21% Similarity=0.399 Sum_probs=76.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC-CCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK-SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++|| |..|.|++++.+ ++++|||||+|.+.++|.+||...+..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3458999999999999999999999999 999999999988 99999999999999999999944478999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987643
No 80
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=2.8e-15 Score=131.57 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=78.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||.++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++|++.+ +..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 4589999999999999999999999999999999999988999999999999999999999875 789999999999998
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 104 ~~~~~ 108 (115)
T 2cpz_A 104 SKNDS 108 (115)
T ss_dssp CSCCC
T ss_pred CCCcC
Confidence 87653
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=3.1e-15 Score=123.62 Aligned_cols=80 Identities=25% Similarity=0.533 Sum_probs=74.9
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.+ +..++|++|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999775 78999999999997
Q ss_pred c
Q psy15852 261 T 261 (661)
Q Consensus 261 ~ 261 (661)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=5.4e-15 Score=127.03 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=76.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||+++++++|+++|++|| |..|.|++++.+++++|||||+|.+.++|.+|++.++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 3458999999999999999999999997 999999999999999999999999999999999545789999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=2.5e-15 Score=131.83 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=73.6
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
..+|||+|||+++++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|++||+.+ +..++|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999886 457999999999999999999875 7899999999999987
Q ss_pred CCCC
Q psy15852 263 KPEP 266 (661)
Q Consensus 263 k~~~ 266 (661)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=1.3e-15 Score=133.70 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=89.4
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++++.++++++++++|+++|++||+|.+|+|+++ +.++|||||+|.+.++|.+| +..+++..+.|+.|.|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNA----VDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHH----HHHHTTCBSSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHH----HHHcCCCEECCeEEEEE
Confidence 445555555559999999999999999999999976 55799999999999999999 88899999999999999
Q ss_pred hhhccCCeeEecCCCccCCHHHHHHHHhcCCC
Q psy15852 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGN 210 (661)
Q Consensus 179 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 210 (661)
++.++... ++++...++++|+++|++||-
T Consensus 81 ~a~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF---QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT---TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh---hhhhHhHhHHHHHHHHHHhCC
Confidence 98765433 789999999999999999983
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.7e-15 Score=121.94 Aligned_cols=75 Identities=40% Similarity=0.655 Sum_probs=71.4
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
+|||+|||+++++++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++..+..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998899999999999999999999986688999999999875
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=4e-15 Score=123.54 Aligned_cols=66 Identities=44% Similarity=0.656 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.+++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~ 75 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEH 75 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999999999999999999999999999999987443
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.4e-15 Score=124.70 Aligned_cols=80 Identities=14% Similarity=0.344 Sum_probs=75.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+.+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..+.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 44589999999999999999999999999999999999999999999999999999999999876 67899999999997
Q ss_pred c
Q psy15852 261 T 261 (661)
Q Consensus 261 ~ 261 (661)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=8.2e-16 Score=129.61 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCC--eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe----eec
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGE--IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH----VIN 171 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~--I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~----~i~ 171 (661)
.-+++|+.+|++++|+++|+++|++||. |.+|+|++|+.||++||||||+|.++++|++| +..+|+. .|.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~A----i~~lng~~~~~~i~ 83 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL----LQILQSLHPPLKID 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHH----HHHHHSSSSCEEET
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHH----HHHhcCCCCCceEC
Confidence 3467777778789999999999999995 77999999999999999999999999999999 8888875 699
Q ss_pred ceeehhhhhhc
Q psy15852 172 NKKIEAKKAKA 182 (661)
Q Consensus 172 g~~i~v~~~~~ 182 (661)
|++|.|.+++.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999998864
No 89
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=128.41 Aligned_cols=79 Identities=15% Similarity=0.320 Sum_probs=74.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++|+++|+++|++||+|.+|.|++++. +.++|||||+|.+.++|.+|+..+++.++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 457999999999999999999999999999999999987 9999999999999999999999667899999999998765
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=2.5e-15 Score=140.87 Aligned_cols=82 Identities=17% Similarity=0.337 Sum_probs=76.2
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.+ +..|.|+.|.|.|+.++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 67999999999999999999999999999999999989999999999999999999999975 68899999999999887
Q ss_pred CCC
Q psy15852 264 PEP 266 (661)
Q Consensus 264 ~~~ 266 (661)
...
T Consensus 153 ~~~ 155 (165)
T 1rk8_A 153 GPK 155 (165)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1e-15 Score=130.82 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCeeEecCCCc------cCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC-eEE
Q psy15852 184 SGKIFVGGLSP------EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND-KEV 255 (661)
Q Consensus 184 ~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g-~~i 255 (661)
.++|||+|||. ++++++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|.+|++.+ +..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 9999999999999999999999999999999999999999999999999875 789999 999
Q ss_pred EEEeccCCC
Q psy15852 256 DVKKATPKP 264 (661)
Q Consensus 256 ~V~~a~~k~ 264 (661)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998653
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=8.3e-16 Score=128.65 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=70.7
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCC--CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFG--NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.+|||+|||+++++++|+++|++|| .|.+|.++.++.+|+++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999876 689999999999998
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++..+
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 86543
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=122.95 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=73.3
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
++|||+|||+++++++|+++|++||+|..|.+++++.+++++|||||+|.+.++|.+|++.++..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999889999999999987
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=5.8e-15 Score=123.11 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=75.0
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|+..++..+.|+.|.|.++.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 47899999999999999999999999999999999988999999999999999999999944578999999999999764
No 95
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.7e-15 Score=126.10 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=76.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||..+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345899999999999999999999999999999999988 7999999999999999999999875 68899999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88754
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=127.71 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=77.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhc-CCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCc-cCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQ-FGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQK-INDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~-~~g~~i~V~ 258 (661)
...++|||+|||+++++++|+++|++ ||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.+ +.. ++|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999998 8999999999999999999999987 567 999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876644
No 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=128.71 Aligned_cols=80 Identities=9% Similarity=0.180 Sum_probs=73.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.+ .|.|++++ +++++|||||+|.+.++|++||+.++..|+|+.|.|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 45799999999999999999999999955 99999998 79999999999999999999997667899999999999886
Q ss_pred CC
Q psy15852 263 KP 264 (661)
Q Consensus 263 k~ 264 (661)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=126.72 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=76.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999987 6899999999999999999999975 788999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 99
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=6.5e-15 Score=126.96 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=76.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC---eEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND---KEVDV 257 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g---~~i~V 257 (661)
+..++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.+ +..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999987 6999999999999999999999976 677787 99999
Q ss_pred EeccCCCCC
Q psy15852 258 KKATPKPEP 266 (661)
Q Consensus 258 ~~a~~k~~~ 266 (661)
.++.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999987754
No 100
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.9e-15 Score=128.62 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=78.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeE--------EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNII--------ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g 252 (661)
...++|||+|||.++++++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|.+|++.+ +..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3458999999999999999999999999999 6999999889999999999999999999999975 789999
Q ss_pred eEEEEEeccCCCCC
Q psy15852 253 KEVDVKKATPKPEP 266 (661)
Q Consensus 253 ~~i~V~~a~~k~~~ 266 (661)
+.|.|.++.++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999887643
No 101
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.7e-15 Score=122.04 Aligned_cols=75 Identities=37% Similarity=0.758 Sum_probs=72.0
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
+|||+|||+++++++|+++|++||+|.+|.+++++.++.++|||||+|.+.++|.+|++.+++.+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998889999999999875
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=129.64 Aligned_cols=84 Identities=20% Similarity=0.404 Sum_probs=78.2
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
.+..++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999999889999999999999999999999865 7899999999999
Q ss_pred ccCCC
Q psy15852 260 ATPKP 264 (661)
Q Consensus 260 a~~k~ 264 (661)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 103
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=126.70 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
.++|||+|||+++|+++|+++|++||.|.+|+|++|+. |+++|||||+|.+.++|.+|++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHc
Confidence 57899999999999999999999999999999999988 99999999999999999999994
No 104
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=5.6e-15 Score=127.59 Aligned_cols=84 Identities=21% Similarity=0.419 Sum_probs=77.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc---CCeEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI---NDKEVDV 257 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~---~g~~i~V 257 (661)
...++|||+|||..+++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.+ +..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999976 5566 8899999
Q ss_pred EeccCCCC
Q psy15852 258 KKATPKPE 265 (661)
Q Consensus 258 ~~a~~k~~ 265 (661)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99988654
No 105
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=124.74 Aligned_cols=80 Identities=18% Similarity=0.379 Sum_probs=75.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.+ +..++|++|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3578999999999999999999999999999999999999999999999999999999999975 689999999999987
Q ss_pred C
Q psy15852 262 P 262 (661)
Q Consensus 262 ~ 262 (661)
+
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=122.33 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA----IQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHcCCCEECCeEEEEE
Confidence 34455555555999999999999999999999999988999999999999999999999 88899999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++.++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 88764
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=123.05 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..++|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999999999999999999999999997553
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=127.83 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.+
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 478999999999999999999999999999999999999999999999999999999999975 7899999999999987
Q ss_pred CC
Q psy15852 263 KP 264 (661)
Q Consensus 263 k~ 264 (661)
+.
T Consensus 103 ~~ 104 (106)
T 1p27_B 103 RG 104 (106)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 109
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.6e-15 Score=125.74 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..++|||+|||+++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|+++.|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~ 79 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHM 79 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCe
Confidence 467899999999999999999999999999999999999999999999999999999999997543
No 110
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=5.9e-15 Score=128.12 Aligned_cols=67 Identities=30% Similarity=0.464 Sum_probs=61.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
...++|||+|||+++|+++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~ 89 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 89 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999998653
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=125.83 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=72.0
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEE
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDV 257 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V 257 (661)
.+..++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.+ +..+.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999864 799999999999999999964 36899999999
Q ss_pred EeccCCCCC
Q psy15852 258 KKATPKPEP 266 (661)
Q Consensus 258 ~~a~~k~~~ 266 (661)
.++.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999887654
No 112
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=124.84 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIE-NVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~-~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++++++|+++|++||.|. +|+|++|+.||+++|||||+|.+.++|++|++.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999 9999999999999999999999999999999987653
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-15 Score=120.90 Aligned_cols=63 Identities=32% Similarity=0.503 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
++|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999999999999999999999999999999999877
No 114
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=8e-15 Score=121.93 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCC-cCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ-RKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+.++|||+|||.++++++|+++|++||.|.+|.++.+..++. ++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999887665 8999999999999999999975 78999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 115
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=124.78 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=76.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEE-EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIE-TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|++||+.++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 34589999999999999999999999999997 888888 6799999999999999999999999788999999999998
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 87553
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1e-14 Score=126.91 Aligned_cols=83 Identities=17% Similarity=0.342 Sum_probs=77.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 3478999999999999999999999999999999999989999999999999999999999975 789999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 105 ~~~~ 108 (110)
T 1oo0_B 105 VKGP 108 (110)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 7653
No 117
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.1e-14 Score=119.60 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=72.8
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|.++
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a----~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA----MDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH----HHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHH----HHHhcCCeeCCcEEEEEec
Confidence 455555556999999999999999999999999989999999999999999999999 8889999999999999998
Q ss_pred hccC
Q psy15852 181 KAKS 184 (661)
Q Consensus 181 ~~~~ 184 (661)
.++.
T Consensus 79 ~~~~ 82 (83)
T 3md1_A 79 AKLE 82 (83)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7653
No 118
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=125.31 Aligned_cols=83 Identities=17% Similarity=0.351 Sum_probs=76.9
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeE-EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeE----E
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNII-ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKE----V 255 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~----i 255 (661)
...++|||+|||+++++++|+++|++||.|. +|.+++++.++.++|||||+|.+.++|++|++.+ +..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468999999999999999999999999999 9999999989999999999999999999999976 68899999 9
Q ss_pred EEEeccCCC
Q psy15852 256 DVKKATPKP 264 (661)
Q Consensus 256 ~V~~a~~k~ 264 (661)
+|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998653
No 119
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=124.78 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=73.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34589999999999999999999999999999999764 557999999999999999999775 68999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=5.9e-15 Score=118.80 Aligned_cols=59 Identities=29% Similarity=0.545 Sum_probs=57.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q psy15852 595 KMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~ 653 (661)
+|||+|||+++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999998
No 121
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=123.13 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=74.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+ ++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34589999999999999999999999999999999998643 6899999999999999999965 67899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 886543
No 122
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=122.46 Aligned_cols=83 Identities=20% Similarity=0.458 Sum_probs=75.4
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|++.+ +..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999998864 38999999999999999999975 78999999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987654
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.1e-15 Score=126.30 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
..+|||+|||+++||+||+++|++|| |++|+|++|+ +|+++|||||+|.+.++|++||+.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 57999999999999999999999999 4599999998 799999999999999999999964
No 124
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=126.91 Aligned_cols=67 Identities=24% Similarity=0.417 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+|++.+++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 82 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 82 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999987763
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.7e-14 Score=128.44 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=75.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||.++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++.++..|+|+.|.|.++.+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 47999999999999999999999999999999999988899999999999999999999944478999999999999865
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=124.43 Aligned_cols=62 Identities=31% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIEN-VTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~-v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
...+|||+|||+++|++||+++|++||.|.+ |+|+.+ .||+++|||||+|.+.++|.+||..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh
Confidence 4679999999999999999999999999987 999998 6899999999999999999999998
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8e-15 Score=128.43 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=76.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCe-EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNI-IETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+++++++|+++|++||.| ..|.|++++ +++++|||||+|.+.++|.+||+.++..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 45799999999999999999999999999 899999998 8999999999999999999999997789999999999998
Q ss_pred CCC
Q psy15852 262 PKP 264 (661)
Q Consensus 262 ~k~ 264 (661)
++.
T Consensus 93 ~~~ 95 (114)
T 2cpy_A 93 LED 95 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=3.1e-15 Score=134.70 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=75.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCC---eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGN---IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
...++|||+|||+++|+++|+++|++||. |.+|.|++++. |+++|||||+|.+.++|++||+.++..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 44589999999999999999999999999 89999999987 999999999999999999999955689999999999
Q ss_pred eccCCC
Q psy15852 259 KATPKP 264 (661)
Q Consensus 259 ~a~~k~ 264 (661)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987643
No 129
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.9e-14 Score=123.37 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=75.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345899999999999999999999999999999999987 4899999999999999999999975 78999999999998
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7644
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=123.69 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=77.5
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCC-eEEEEec-cCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGN-IIETEMP-YDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDV 257 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V 257 (661)
..++|||+|||+++++++|+++|++||. |.+|.++ .+..++.++|||||+|.+.++|.+|++.+ +..++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 88888999999999999999999999986 37899999999
Q ss_pred EeccCCCCC
Q psy15852 258 KKATPKPEP 266 (661)
Q Consensus 258 ~~a~~k~~~ 266 (661)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987654
No 131
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=9.2e-15 Score=130.87 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=77.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+++++++|+++|++||+|..|.+++++.+++++|||||+|.+.++|++|++.+ +..|+|++|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44589999999999999999999999999999999999999999999999999999999999975 68999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 132
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=123.89 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=74.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIE--------TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g 252 (661)
+..++|||+|||.++++++|+++|++||.|.. |.++.++.+++++|||||+|.+.++|.+|++.+ +..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 44589999999999999999999999999999 999999999999999999999999999999875 789999
Q ss_pred eEEEEEecc
Q psy15852 253 KEVDVKKAT 261 (661)
Q Consensus 253 ~~i~V~~a~ 261 (661)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=4.9e-15 Score=119.25 Aligned_cols=63 Identities=32% Similarity=0.524 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 595 KMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
+|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++...+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 589999999999999999999999999999999999999999999999999999999997443
No 134
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=3.8e-15 Score=124.58 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=69.0
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCC--CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYG--EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G--~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
++++.++++++++++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|++| +..+|+..+.|+.|.|.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~A----i~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL----MDLLPKRELHGQNPVVT 78 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHH----HHHGGGSCSSSCCCEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHH----HHHcCCCeeCCEEEEEE
Confidence 455555556999999999999999 999999999999999999999999999999999 88999999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++.+.
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 88764
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-15 Score=125.10 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=73.9
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCC-CCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK-SKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++|| |.+|.|++++ .+++++|||||+|.+.++|.+|+...+..++|+.|.|.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 3458999999999999999999999999 9999999998 6899999999999999999999944478999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8764
No 136
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.53 E-value=1.6e-14 Score=122.27 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=73.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
+++++.++++++++++|+++|++||+|.+|+|+.++.+|+++|||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA----VRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHH----HHHhCCCeECCeEEEEEE
Confidence 4555555556999999999999999999999999998999999999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 87654
No 137
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=134.46 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=76.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCC--CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFG--NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
..++|||+|||+++++++|+++|++|| .|.+|.|+.|+.+|+++|||||+|.+.++|.+||+.+ +..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999999999999999999999999999999996 6899999999999
Q ss_pred ccCCC
Q psy15852 260 ATPKP 264 (661)
Q Consensus 260 a~~k~ 264 (661)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 138
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=4.1e-15 Score=127.01 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=73.7
Q ss_pred CCcEEEEcCCC------cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 99 KNKMVSHPGIV------HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 99 ~~~~~~~~~~~------~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
.+++||.++++ ++++++|+++|++||+|.+|+|++++.||++||||||+|.+.++|++| +..+|+..+.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A----i~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKI----IKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH----HHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHH----HHHhCCcccCC
Confidence 34566666777 899999999999999999999999999999999999999999999999 88999999999
Q ss_pred -eeehhhhhhcc
Q psy15852 173 -KKIEAKKAKAK 183 (661)
Q Consensus 173 -~~i~v~~~~~~ 183 (661)
+.|.|.++.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999988754
No 139
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=121.83 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA----LEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHH----HHHHTTCCSSSSCCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHH----HHHhCCCeeCCcEEEEE
Confidence 34555555555999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 987654
No 140
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1.3e-14 Score=119.74 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|.
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA----IDNMNESELFGRTIRVN 82 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHH----HHHhCCCEECCcEEEEE
Confidence 34455555555999999999999999999999999988999999999999999999999 88999999999999998
Q ss_pred hhh
Q psy15852 179 KAK 181 (661)
Q Consensus 179 ~~~ 181 (661)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 763
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=4.5e-14 Score=121.21 Aligned_cols=77 Identities=19% Similarity=0.430 Sum_probs=70.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45799999999999999999999999999999986 569999999999999999975 688999999999998
Q ss_pred CCCCCC
Q psy15852 262 PKPEPF 267 (661)
Q Consensus 262 ~k~~~~ 267 (661)
++....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 876543
No 142
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=121.16 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCC-C--ccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-Q--KINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~-~--~~~g~~i~V~ 258 (661)
+++++|||+|||+++++++|+++|++||.|.+|.+++ .||||||+|.+.++|.+|++.++ . .+.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4568999999999999999999999999999999975 37999999999999999999863 3 5899999999
Q ss_pred eccCCC
Q psy15852 259 KATPKP 264 (661)
Q Consensus 259 ~a~~k~ 264 (661)
+++++.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.4e-14 Score=127.68 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=74.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|++.+ +..++|+.|+|.+++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3479999999999999999999999999999999999989999999999999999999999986 689999999999874
No 144
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=121.42 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=73.3
Q ss_pred cCCeeEecCCCccCCHHHHH----HHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIK----AHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDV 257 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V 257 (661)
..++|||+|||+++++++|+ ++|++||+|.+|.|+.++.+ +|||||+|.+.++|++|++.+ +..++|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999 99999999999999998765 899999999999999999976 67899999999
Q ss_pred EeccCCCC
Q psy15852 258 KKATPKPE 265 (661)
Q Consensus 258 ~~a~~k~~ 265 (661)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987654
No 145
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=125.45 Aligned_cols=82 Identities=18% Similarity=0.481 Sum_probs=77.0
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 478999999999999999999999999999999999888999999999999999999999876 6889999999999988
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 654
No 146
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=127.49 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=75.9
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..++..|+|+.|.|.++.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 37999999999999999999999999999999999999999999999999999999999944578999999999999876
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 105 ~ 105 (114)
T 2cq4_A 105 K 105 (114)
T ss_dssp H
T ss_pred c
Confidence 5
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=118.85 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=58.3
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 594 NKMVSHPGIVDK------ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 594 ~~l~v~nlp~~~------te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
++|||+|||+++ |+++|+++|++||.|.+|+|+ +.||+++|||||+|.+.++|.+|++.++..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 689999999999 789999999999999999988 367999999999999999999999987654
No 148
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=120.90 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA----KERANGMELDGRRIRV 89 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHH----HHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHH----HHHhCCCEECCEEEEE
Confidence 345566666666999999999999999999999999999999999999999999999999 8889999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 88764
No 149
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=1.9e-14 Score=120.81 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=75.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||.++++++|+++|++||.|..|.++++ ++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999874 6889999999999999999999975 68899999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 150
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=122.11 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=74.0
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+.+++++|+++|++||+|.+|.++.++. ++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3457999999999999999999999999999999999886 899999999999999999999965 78999999999998
Q ss_pred cC
Q psy15852 261 TP 262 (661)
Q Consensus 261 ~~ 262 (661)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 151
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=125.07 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA----IKIMDMIKLYGKPIRV 89 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHH----HHHSSSCBCSSCBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHH----HHHhCCCeECCeEEEE
Confidence 334555555555999999999999999999999999998999999999999999999999 8889999999999999
Q ss_pred hhhhccCCeeE
Q psy15852 178 KKAKAKSGKIF 188 (661)
Q Consensus 178 ~~~~~~~~~lf 188 (661)
.++.++..+..
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 1x5u_A 90 NKASAHNKNLS 100 (105)
T ss_dssp EETTTTSCCCC
T ss_pred EECCCCCcCCC
Confidence 99988765543
No 152
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=119.43 Aligned_cols=81 Identities=12% Similarity=0.314 Sum_probs=74.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++| .|..|.|+++ .+++++|||||+|.+.++|.+|++.++..++|+.|.|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 45799999999999999999999999 9999999998 679999999999999999999999446899999999999988
Q ss_pred CCC
Q psy15852 263 KPE 265 (661)
Q Consensus 263 k~~ 265 (661)
++.
T Consensus 87 ~~~ 89 (91)
T 2dgw_A 87 GPS 89 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 153
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=120.62 Aligned_cols=80 Identities=30% Similarity=0.405 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++| +..+++..+.|++|.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC----TRAINNKQLFGRVIKA 90 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHH----HHHTTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH----HHHcCCCeeCCcEEEE
Confidence 345666666666999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred hhhh
Q psy15852 178 KKAK 181 (661)
Q Consensus 178 ~~~~ 181 (661)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 154
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.4e-14 Score=116.32 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=63.0
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
-+++.++.+.+||++|+++|.+||+|.++++.. +||||||+|.++++|++| +..+|+..+.|++|.|..+
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~A----i~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKA----QMALNNCVLANTTIFAESP 78 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHH----HHHHTTEEETTEEEEEECC
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHH----HHHhcCCEECCcEEEEEEC
Confidence 355555556999999999999999999999975 689999999999999999 9999999999999998766
No 155
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=122.29 Aligned_cols=81 Identities=35% Similarity=0.490 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +. +++..+.|+.|.|.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA----VN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHH----HH-HCCCBSSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHH----HH-hCCCEECCeEEEEE
Confidence 34555555556999999999999999999999999999999999999999999999998 66 89999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 987654
No 156
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=122.71 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=72.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA----YAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHH----HHHTTTEESSSCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHH----HHHhCCCEECCcEEEEEE
Confidence 4455555555999999999999999999999999998899999999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87654
No 157
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=123.78 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA----IAGVSGFGYDHLILNVE 90 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH----HHHTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHH----HHHcCCCeeCCcEEEEE
Confidence 34455555555999999999999999999999999998999999999999999999999 88899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987654
No 158
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.4e-15 Score=124.56 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=75.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998888888888999999999999999999999887 58999999999998
Q ss_pred cCC
Q psy15852 261 TPK 263 (661)
Q Consensus 261 ~~k 263 (661)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 159
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=2.5e-14 Score=123.69 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=74.1
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345899999999999999999999999999999999998 8999999999999999999999975 78999999999998
Q ss_pred c
Q psy15852 261 T 261 (661)
Q Consensus 261 ~ 261 (661)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 160
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=128.51 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=58.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEI----ENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I----~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
...+|||+||||++|++||+++|++||.| .+|+|++|+ +|+++|||||+|.+.++|.+||.+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCC
Confidence 35799999999999999999999999985 699999995 79999999999999999999999733
No 161
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.8e-14 Score=121.20 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=70.5
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC-----eEEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND-----KEVD 256 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g-----~~i~ 256 (661)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.+ +..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4589999999999999999999999999999999875 89999999999999999987 578899 9999
Q ss_pred EEeccCCCCC
Q psy15852 257 VKKATPKPEP 266 (661)
Q Consensus 257 V~~a~~k~~~ 266 (661)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999986643
No 162
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=125.30 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=75.2
Q ss_pred cCCeeEecCCCccCCHHHHH---HHHhcCCCeEEEEeccCCCCC---CcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIK---AHFAQFGNIIETEMPYDKSKS---QRKNFCFITFEHESVVIDLLKNP-KQKINDKEV 255 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i 255 (661)
..++|||+|||+++++++|+ ++|++||+|..|.|+++..++ .++|||||+|.+.++|++|++.+ +..++|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 999999999999999887654 55699999999999999999985 688999999
Q ss_pred EEEeccCCCC
Q psy15852 256 DVKKATPKPE 265 (661)
Q Consensus 256 ~V~~a~~k~~ 265 (661)
.|.++.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999998763
No 163
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=123.04 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||+++++++|+++|++| .|.+|.|++++. |+++|||||+|.+.++|++||+.++..|+||.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 3689999999999999999999999 899999999876 99999999999999999999976678999999999988764
Q ss_pred C
Q psy15852 264 P 264 (661)
Q Consensus 264 ~ 264 (661)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 164
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=121.14 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|+.++ +++++|||||+|.+.++|++| +..+++..+.|+.|.|
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQA----VMKMDGMTIKENIIKV 90 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH----HHHHTTEESSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHH----HHHhCCCEECCEEEEE
Confidence 34566666666699999999999999999999999998 799999999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987654
No 165
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=126.26 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEI-ENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I-~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
..++|||+|||+++|+++|+++|++||.| .+|+|++|+ ||+++|||||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh
Confidence 35799999999999999999999999999 899999998 899999999999999999999988
No 166
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.7e-14 Score=125.27 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...+++|.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA----IQSMNGFQIGMKRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHH----HHHcCCCEECCEEEEE
Confidence 345566666666999999999999999999999999998999999999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 9987654
No 167
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=3.4e-14 Score=118.42 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=71.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
+++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| + .+++..+.|+.|.|.+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a----~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS----L-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHH----G-GGTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH----H-hcCCCEECCcEEEEEE
Confidence 4555555556999999999999999999999999998999999999999999999998 7 9999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+++.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8764
No 168
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=8.5e-15 Score=123.73 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=73.6
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.+ +..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44589999999999999999999999999999999988888999999999999999999999975 78999999999987
Q ss_pred cC
Q psy15852 261 TP 262 (661)
Q Consensus 261 ~~ 262 (661)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 169
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=123.61 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA----IDNMNESELFGRTIRV 86 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHH----HHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH----HHHhCCCEECCcEEEE
Confidence 345666666666999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2cqb_A 87 NLAKPMR 93 (102)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9987654
No 170
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=120.70 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=69.3
Q ss_pred cCCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEEE
Q psy15852 183 KSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDVK 258 (661)
Q Consensus 183 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V~ 258 (661)
+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.+ ...+.|++|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 457899999999 9999999999999999999999864 689999999999999999976 246999999999
Q ss_pred eccCCCC
Q psy15852 259 KATPKPE 265 (661)
Q Consensus 259 ~a~~k~~ 265 (661)
++..+..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9987553
No 171
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=123.50 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=71.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V~ 258 (661)
++.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.+ +..+.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 44689999999999999999999999999999999864 799999999999999999976 367999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++.++...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99887654
No 172
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=123.36 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA----EAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHH----HHHHSSCCBTTBCCEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHH----HHHcCCCEECCcEEEEE
Confidence 44555555555999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++.+.
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98754
No 173
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-15 Score=133.82 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=77.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEE--------EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIE--------TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g 252 (661)
+..++|||+|||..+++++|+++|++||.|.. |.++.++.+++++|||||+|.+.++|.+|++.+ +..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999999 999999888999999999999999999999976 688999
Q ss_pred eEEEEEeccCCCC
Q psy15852 253 KEVDVKKATPKPE 265 (661)
Q Consensus 253 ~~i~V~~a~~k~~ 265 (661)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999988764
No 174
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=122.21 Aligned_cols=80 Identities=26% Similarity=0.510 Sum_probs=71.3
Q ss_pred CcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.||++|+ +++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +.. ++..|.|+.|.|.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a----~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV----LAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH----HHH-CSEEETTEEEBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH----HHh-CCCeECCEEEEEE
Confidence 444555555 5999999999999999999999999999999999999999999999998 777 9999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 987654
No 175
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.8e-14 Score=119.15 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=71.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V~ 258 (661)
++.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ +..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45689999999999999999999999999999998764 899999999999999999864 468999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99887654
No 176
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.9e-14 Score=119.55 Aligned_cols=80 Identities=19% Similarity=0.362 Sum_probs=71.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 345899999999999999999999999987 56665 56899999999999999999999976 67899999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88654
No 177
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=3.9e-14 Score=124.23 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=72.8
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+|+|.++++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA----IQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHTTTCEETTEECEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH----HHHhCCCEECCEEEEEEE
Confidence 3455555555999999999999999999999999988999999999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87654
No 178
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=131.00 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=75.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEE--EEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CC----ccCCeEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIE--TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQ----KINDKEV 255 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~----~~~g~~i 255 (661)
..++|||+|||+++++++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+|+..+ +. .++|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3479999999999999999999999999977 99999999999999999999999 999999987 56 8999999
Q ss_pred EEEeccCCCC
Q psy15852 256 DVKKATPKPE 265 (661)
Q Consensus 256 ~V~~a~~k~~ 265 (661)
.|.++.++..
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 179
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=5.5e-15 Score=123.56 Aligned_cols=80 Identities=28% Similarity=0.553 Sum_probs=72.0
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||+|||.++++++|+++|++||+|.+|.+++++.++.++|||||+|.+.+ |.+|+..+ +..++|+.|.|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999987 68899999999999886
Q ss_pred CC
Q psy15852 264 PE 265 (661)
Q Consensus 264 ~~ 265 (661)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 180
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.8e-14 Score=123.39 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhC------Ceeec
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG------NHVIN 171 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~------~~~i~ 171 (661)
...++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..++ +..|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC----LAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHH----HHHHCTTTTTCCEESS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHH----HHHhccccccCCcEEc
Confidence 345666666666999999999999999999999999999999999999999999999999 88899 99999
Q ss_pred ceeehhhhhhccC
Q psy15852 172 NKKIEAKKAKAKS 184 (661)
Q Consensus 172 g~~i~v~~~~~~~ 184 (661)
|+.|.|.++.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999987654
No 181
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=122.83 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=72.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|+.++.+|+++|||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA----MEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHH----HHHHTTCBSSSSBCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHH----HHHhcCCEECCcEEEEEe
Confidence 3444444445999999999999999999999999999999999999999999999999 888999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87653
No 182
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=121.01 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCC---CCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPN---TGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~---tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~ 174 (661)
+..++++.++++++++++|+++|++||+|.+|+|++++. |++++|||||+|.+.++|++| +..+++..|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA----LKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHH----HHHSTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHH----HHHhCCCeeCCeE
Confidence 345666666666999999999999999999999999876 669999999999999999999 8889999999999
Q ss_pred ehhhhhhccC
Q psy15852 175 IEAKKAKAKS 184 (661)
Q Consensus 175 i~v~~~~~~~ 184 (661)
|.|.++.++.
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999987654
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=2.7e-14 Score=116.01 Aligned_cols=73 Identities=5% Similarity=0.121 Sum_probs=67.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.+ +..+.|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999954 5999999999999999999997 579999999999985
No 184
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=121.71 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEE-EEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENV-TLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v-~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..++++.++++++++++|+++|++||+|.+| +|++++.+++++|||||+|.+.++|++| +..+++..+.|++|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA----IEAMNGQYLCNRPITV 80 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHH----HHTTTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHH----HHHcCCCEECCEEEEE
Confidence 3455555555599999999999999999999 9999988999999999999999999999 8889999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9987654
No 185
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=123.41 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|++| +..+++..+.|++|.|.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A----i~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA----LEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHH----HHHHTTCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH----HHHcCCCEECCEEEEEE
Confidence 34455555555999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 887653
No 186
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.5e-14 Score=130.67 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=62.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.++..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999976643
No 187
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.3e-14 Score=116.68 Aligned_cols=77 Identities=26% Similarity=0.557 Sum_probs=70.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345799999999999999999999999999999996 689999999999999999876 67899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887653
No 188
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=121.07 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIEN--------VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~--------v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
..+.+|++|+| ++++++|+++|++||.|.+ |+|++++.+|+++|||||+|.+.++|++| +..+++..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A----i~~l~g~~ 87 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA----IDWFDGKE 87 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHH----HHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHH----HHHhCCCE
Confidence 34455555555 9999999999999999999 99999999999999999999999999999 88899999
Q ss_pred ecceeehhhhh
Q psy15852 170 INNKKIEAKKA 180 (661)
Q Consensus 170 i~g~~i~v~~~ 180 (661)
+.|+.|.|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999998875
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=1.8e-14 Score=127.58 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeE--EEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNII--ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a 260 (661)
..++|||+|||+++++++|+++|++| .|. +|.|++++. |+++|||||+|.+.++|++||+.++..|+||.|.|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 45789999999999999999999999 677 999999987 99999999999999999999998889999999999988
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.++.
T Consensus 119 ~~~e 122 (126)
T 2hgm_A 119 SQEE 122 (126)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7543
No 190
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=2.5e-14 Score=128.79 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGE---IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
.++|||+|||+++||+||+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++|++ ++..
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~ 110 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE 110 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 578999999999999999999999999 89999999988 9999999999999999999999 6543
No 191
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=123.12 Aligned_cols=82 Identities=28% Similarity=0.495 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++| +..+++..|.|++|.|.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA----MMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHH----HHHHTTCCTTSCCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH----HHHhCCCEECCeEEEEE
Confidence 34455555555999999999999999999999999998999999999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987654
No 192
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=118.53 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=70.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~V~ 258 (661)
++.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ ...+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999998753 799999999999999999875 356999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++..+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99886643
No 193
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=2.4e-13 Score=128.54 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=62.8
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
...++|||.|||+++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.++..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 346899999999999999999999999999999999998 8999999999999999999999977654
No 194
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=4e-14 Score=125.33 Aligned_cols=62 Identities=31% Similarity=0.332 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIE--NVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~--~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
.++|||+|||+++||+||+++|++| .|+ +|+|++|+. |+++|||||+|.+.++|.+||+...
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC
Confidence 5789999999999999999999999 677 999999988 9999999999999999999998643
No 195
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=118.76 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+..++++.++++++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++| +..+|+..+.|+.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA----VTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHH----HHHHHHHTCCEESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHH----HHHhcCCeEeeEEEee
Confidence 344555655556999999999999999999999999999999999999999999999999 8889999999999998
Q ss_pred hhhh
Q psy15852 178 KKAK 181 (661)
Q Consensus 178 ~~~~ 181 (661)
.++.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 196
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=122.20 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
..+|||+|||+++||+||+++|++| .|.+|+|++|+. |+++|||||+|.+.++|.+||..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~ 75 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKR 75 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhc
Confidence 4689999999999999999999999 899999999986 99999999999999999999954
No 197
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=123.43 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGE---IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
...+|||+|||+++|++||+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|.+||+ +|..
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 4679999999999999999999999998 99999999988 9999999999999999999999 5543
No 198
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=130.81 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=71.8
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCC--CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYG--EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G--~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
.+++|.+|++++++++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A----i~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL----LELLPGKVLNGEKVDV 131 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH----HHHSTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHcCCCEECCeEeEE
Confidence 4555555555999999999999999 999999999999999999999999999999999 8999999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++.+
T Consensus 132 ~~a~~ 136 (156)
T 3n9u_C 132 RPATR 136 (156)
T ss_dssp EECCH
T ss_pred EEcCC
Confidence 88764
No 199
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=6e-14 Score=118.45 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|++| +..+++..+.|++|.|.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYA----IALLNGIRLYGRPINVS 90 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHH----HHHhCCCEECCCEEEEE
Confidence 34455555555999999999999999999999999986 99999999999999999999 88899999999999998
Q ss_pred hhh
Q psy15852 179 KAK 181 (661)
Q Consensus 179 ~~~ 181 (661)
+++
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 200
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=3.9e-14 Score=124.78 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGE---IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..++|||+|||+++|++||+++|++||. |.+|+|++++. |+++|||||+|.+.++|.+||+ +|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 4678999999999999999999999999 89999999987 9999999999999999999999 554
No 201
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=125.48 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNT---GRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~t---g~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
..++|||+|||+++|+++|+++|++||.|. +.++.++.| |+++|||||+|.+.++|.+||+.++
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 357899999999999999999999999999 999999887 8999999999999999999999764
No 202
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=3.9e-14 Score=126.76 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=75.1
Q ss_pred cCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 97 EAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 97 ~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++..+++|.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..|.|++|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A----i~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA----KERANGMELDGRRIR 119 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHH----HHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHhCCCEECCEEEE
Confidence 3455666666666999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred hhhhhcc
Q psy15852 177 AKKAKAK 183 (661)
Q Consensus 177 v~~~~~~ 183 (661)
|.++.++
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998764
No 203
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=5.9e-14 Score=119.98 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=70.7
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccCC
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPK 263 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~k 263 (661)
++|||+|||+++++++|+++|++||+|..|.++.+ ++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999976 68899999999999887
Q ss_pred CC
Q psy15852 264 PE 265 (661)
Q Consensus 264 ~~ 265 (661)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 204
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.3e-14 Score=122.07 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGE-IENVTLK-SDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~-I~~v~i~-~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
..++|||+|||+++|+++|+++|++||. |.+|+|+ .++.||+++|||||+|.+.++|.+|++.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 3579999999999999999999999998 9999999 888899999999999999999999999875
No 205
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=5.3e-14 Score=123.96 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=69.6
Q ss_pred CcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.||++|+ +++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA----IKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHH----HHHCCCCEETTEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHH----HHHcCCCEECCEEEEEE
Confidence 344555555 5999999999999999999999999998999999999999999999999 88999999999999998
Q ss_pred hhh
Q psy15852 179 KAK 181 (661)
Q Consensus 179 ~~~ 181 (661)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 753
No 206
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=121.58 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCcccEEEEEEeehhhHHHhhHHHHHHh-CCeeecceee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSD-PNTGRSRGFAFIVFKDTESLEKASVEDVIAE-GNHVINNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~-~~tg~srG~afV~F~~~e~A~~A~~~~~~~~-~~~~i~g~~i 175 (661)
...++++.++++++++++|+++|++||+|.+|+|+++ +.+++++|||||+|.+.++|++| +..+ ++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA----FNALCHSTHLYGRRL 89 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHH----HHHHHTCCBSSSCBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHH----HHHhccCCeECCCEE
Confidence 3455666666669999999999999999999999998 77899999999999999999999 8889 9999999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999987654
No 207
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=119.67 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=72.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++|+ .|.++.++.++.++|||||+|.+.++|.+||+.+ +..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3458999999999999999999999874 5777778888999999999999999999999975 78999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 98764
No 208
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=121.00 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.+|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45899999999999999999999999999999999998 8999999999999999999999976653
No 209
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=5.6e-14 Score=122.18 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=72.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|+.++.+|+++|||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA----KEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH----HHHcCCCEECCcEEEEEE
Confidence 3444444455999999999999999999999999998999999999999999999999 888999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87653
No 210
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.3e-14 Score=122.08 Aligned_cols=80 Identities=21% Similarity=0.484 Sum_probs=73.3
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||.++++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35899999999999999999999999999999999886 458999999999999999999975 789999999999998
Q ss_pred CCC
Q psy15852 262 PKP 264 (661)
Q Consensus 262 ~k~ 264 (661)
++.
T Consensus 106 ~~~ 108 (109)
T 2err_A 106 ARV 108 (109)
T ss_dssp CSC
T ss_pred CCc
Confidence 753
No 211
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.1e-14 Score=125.86 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
...+|||+|||+++|+++|+++|++||.|.+|.++.+..||+++|||||+|.+.++|.+||+ +|..+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~ 90 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY 90 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe
Confidence 45799999999999999999999999999998888888899999999999999999999999 66543
No 212
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=6.4e-14 Score=120.23 Aligned_cols=80 Identities=16% Similarity=0.359 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++|| |.+|+|++++.+++++|||||+|.+.++|++| + .+++..|.|+.|.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A----~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA----L-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH----G-GGTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHH----H-hhCCCeECCeEEEEE
Confidence 34455555555999999999999997 99999999999999999999999999999998 7 899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987654
No 213
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=124.25 Aligned_cols=82 Identities=18% Similarity=0.398 Sum_probs=76.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||..+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34799999999999999999999999999999999998 8999999999999999999999965 678999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
+...
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 214
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=9.3e-14 Score=126.29 Aligned_cols=78 Identities=26% Similarity=0.543 Sum_probs=73.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..++|||+|||..+++++|+++|++||+|..|.+++++.+++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4589999999999999999999999999999999999999999999999999999999999876 57899999999875
No 215
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=122.67 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=71.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+++|.++++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++| + .+++..|.|+.|.|.+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A----~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA----I-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHH----H-HHTTEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHH----H-HcCCCEeCCeEEEEEe
Confidence 4555555555999999999999999999999999999999999999999999999998 8 9999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 7654
No 216
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=127.20 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=74.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCe----EEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNI----IETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDV 257 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V 257 (661)
...++|||+|||+++++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|++||+.+++.+.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 445899999999999999999999999975 689999884 799999999999999999999998788999999999
Q ss_pred EeccCCC
Q psy15852 258 KKATPKP 264 (661)
Q Consensus 258 ~~a~~k~ 264 (661)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887544
No 217
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=3.8e-14 Score=124.85 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=75.4
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCC---eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGN---IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
...++|||+|||+++++++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||+..+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 34578999999999999999999999999 89999999887 999999999999999999999966789999999999
Q ss_pred eccCCC
Q psy15852 259 KATPKP 264 (661)
Q Consensus 259 ~a~~k~ 264 (661)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=124.08 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.++..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999987653
No 219
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=119.66 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhc-CCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee-ecceee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSK-YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV-INNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~-~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~-i~g~~i 175 (661)
+..++++.++++++++++|+++|++ ||+|.+|+|++++ +++++|||||+|.+.++|.+| +..+++.. +.|+.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA----LTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHH----HHHTTTCCSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHH----HHHccCCcccCCEeE
Confidence 3456666666669999999999999 9999999999998 899999999999999999999 88899999 999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 83 ~v~~a~~~~ 91 (104)
T 2dhg_A 83 RLSVAIPKA 91 (104)
T ss_dssp CCCBCCCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 220
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=6.4e-14 Score=120.70 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCeeEecCCCccC------CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe-EE
Q psy15852 184 SGKIFVGGLSPEM------KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK-EV 255 (661)
Q Consensus 184 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~-~i 255 (661)
.++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|++.+ +..+.|+ +|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 5799999999999 789999999999999999998 456899999999999999999999986 6789998 99
Q ss_pred EEEeccCCC
Q psy15852 256 DVKKATPKP 264 (661)
Q Consensus 256 ~V~~a~~k~ 264 (661)
.|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999998654
No 221
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=115.19 Aligned_cols=81 Identities=27% Similarity=0.532 Sum_probs=64.0
Q ss_pred hhhccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 179 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
...+...+|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.++ ......+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEE
Confidence 34456689999999999999999999999999999999874 699999999999999853 222455779999999
Q ss_pred eccCCCC
Q psy15852 259 KATPKPE 265 (661)
Q Consensus 259 ~a~~k~~ 265 (661)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9988654
No 222
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=3.3e-14 Score=121.77 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=75.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|.+|++ .+..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 45799999999999999999999999999999999998 89999999999999999999999 78899999999999987
Q ss_pred CCCC
Q psy15852 263 KPEP 266 (661)
Q Consensus 263 k~~~ 266 (661)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 7643
No 223
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.47 E-value=7e-14 Score=117.86 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=54.8
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
.+.++|||+|||+++|++||+++|++||.|.+|+|++ +||||||+|.+.++|.+|++.++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999985 47899999999999999998654
No 224
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.1e-14 Score=118.39 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhC--Ceeecceee
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG--NHVINNKKI 175 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~--~~~i~g~~i 175 (661)
..+.|||+|+| ++++++|+++|++||+|.+|+|+++ ||||||+|.+.++|++| +..++ +..|.|++|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~A----i~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTM----VNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHH----HHHHTTSCCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHH----HHHhccCCceECCEEE
Confidence 34556666665 9999999999999999999999974 68999999999999999 77765 578999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 85 ~V~~A~~~~ 93 (105)
T 1sjq_A 85 YIQFSNHKE 93 (105)
T ss_dssp CBCCCSSSS
T ss_pred EEEEcCCCC
Confidence 999987654
No 225
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=9.2e-14 Score=119.68 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc---eee
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN---KKI 175 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g---~~i 175 (661)
..++++.++++++++++|+++|++||+|.+|+|++++ +++++|||||+|.+.++|++| +..+++..+.+ +.|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAA----IHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHH----HHHHSSCCCCTTCSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHH----HHHHcCCccCCCCCccE
Confidence 3455555555599999999999999999999999988 699999999999999999999 88999999998 999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999887654
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=2.7e-14 Score=128.93 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=57.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..+|||+|||+++||+||+++|++|| |++|+|++|+. |+++|||||+|.+.++|++|| +++.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g 107 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDR 107 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCC
Confidence 57899999999999999999999999 77999999987 999999999999999999999 4443
No 227
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=122.26 Aligned_cols=84 Identities=26% Similarity=0.363 Sum_probs=73.4
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++++.++++++++++|+++|++||+|.+|+|+++ ++|||||+|.+.++|++| +..+++..+.|+.|.|.++
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDA----VRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHH----HHHHHHSCSSSCCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHH----HHHHCCCeECCcEEEEEEc
Confidence 3455555559999999999999999999999986 789999999999999999 8889999999999999988
Q ss_pred hccC---------------CeeEecCCC
Q psy15852 181 KAKS---------------GKIFVGGLS 193 (661)
Q Consensus 181 ~~~~---------------~~lfV~nLp 193 (661)
.++. .+|||+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 6542 579999986
No 228
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=6.4e-14 Score=123.00 Aligned_cols=81 Identities=31% Similarity=0.385 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..+++|.++++++++++|+++|++||+|.+|+|+.++ +++++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~A----i~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNA----AKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHH----HHHCSSCBCSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHH----HHHhCCCEECCEEEEEE
Confidence 3455555555599999999999999999999999998 799999999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 887543
No 229
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=5.8e-14 Score=114.80 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=65.0
Q ss_pred CeeEecCCCccC------CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCe-EEE
Q psy15852 185 GKIFVGGLSPEM------KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDK-EVD 256 (661)
Q Consensus 185 ~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~-~i~ 256 (661)
++|||+|||..+ ++++|+++|++||+|.+|.++ +.+|+++|||||+|.+.++|.+|++.+ +..+.|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999988 457899999999999999999999986 6889998 876
Q ss_pred E
Q psy15852 257 V 257 (661)
Q Consensus 257 V 257 (661)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 230
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=118.69 Aligned_cols=80 Identities=19% Similarity=0.423 Sum_probs=72.7
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
.+..++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.+ +..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 344689999999999999999999999999999999875 899999999999999999875 7899999999999
Q ss_pred ccCCCCC
Q psy15852 260 ATPKPEP 266 (661)
Q Consensus 260 a~~k~~~ 266 (661)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887654
No 231
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7e-14 Score=120.23 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=70.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCC-CCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNT-GRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~t-g~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++|.++++++++++|+++|++|| |.+|+|++++.+ ++++|||||+|.+.++|++| + .+++..|.|+.|.|.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A----~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA----L-SLNEESLGNKRIRVD 89 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH----H-GGGTCEETTEECEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH----H-hcCCCEeCCcEEEEE
Confidence 4455555555999999999999999 999999999988 99999999999999999998 7 999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987654
No 232
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.46 E-value=4.3e-14 Score=122.00 Aligned_cols=81 Identities=28% Similarity=0.320 Sum_probs=72.0
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee---cceeeh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI---NNKKIE 176 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i---~g~~i~ 176 (661)
.++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +..+++..+ .+++|.
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA----QSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHH----HHHHTTTCCCTTCSSCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHH----HHHhcCCcccCCCCceEE
Confidence 3444545555999999999999999999999999999999999999999999999999 889999887 899999
Q ss_pred hhhhhccC
Q psy15852 177 AKKAKAKS 184 (661)
Q Consensus 177 v~~~~~~~ 184 (661)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987654
No 233
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=6.6e-14 Score=116.31 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=70.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCC-cccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGR-SRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~-srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.++++.++++++++++|+++|++||+|.+|+|+.++.++. ++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA----LKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHH----HHHcCCCeECCeEEEEE
Confidence 3455555555999999999999999999999999887766 999999999999999999 88899999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++.++
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88654
No 234
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.5e-14 Score=119.16 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|+.+ +++++|||||+|.+.++|++| +..+++..+.|+.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA----VTEMNGRIVATKPLYV 87 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHH----HHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHH----HHHhCCCEeCCcEEEE
Confidence 3455666666669999999999999999999999998 799999999999999999999 8889999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2d9p_A 88 ALAQRKE 94 (103)
T ss_dssp EECSSCC
T ss_pred EEecccc
Confidence 9987654
No 235
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=120.55 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+++++.++++++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA----MRNLNGREFSGRALRVD 83 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHH----HHHSSSBSCSSSCBEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHH----HHHhCCCeeCCcEEEEE
Confidence 35666666666999999999999999999999999988999999999999999999999 88899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 887653
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.46 E-value=1.2e-13 Score=119.42 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++.+++++|+++|++||+|.+|+|+.++ +|+++|||||+|.+.++|++| +..+++..+.|+.|.|
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKA----MKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHH----HHHhCCCEeCCcEEEE
Confidence 34455555555599999999999999999999999998 799999999999999999999 8889999999999999
Q ss_pred hhhh
Q psy15852 178 KKAK 181 (661)
Q Consensus 178 ~~~~ 181 (661)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 237
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=114.23 Aligned_cols=77 Identities=23% Similarity=0.549 Sum_probs=69.5
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345799999999999999999999999999999996 449999999999999999875 68899999999999
Q ss_pred cCCCCC
Q psy15852 261 TPKPEP 266 (661)
Q Consensus 261 ~~k~~~ 266 (661)
.++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 887643
No 238
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=117.82 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
..++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|++.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999864 799999999999999999864
No 239
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-14 Score=125.10 Aligned_cols=84 Identities=17% Similarity=0.301 Sum_probs=71.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||.++++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4589999999999999999999999999843322222226889999999999999999999986 688999999999999
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87653
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=116.14 Aligned_cols=76 Identities=21% Similarity=0.409 Sum_probs=69.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccC--CeEEEEEe
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIN--DKEVDVKK 259 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~--g~~i~V~~ 259 (661)
..++|||+|||.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.+ +..+. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4589999999999999999999999999999999753 789999999999999999975 68899 99999999
Q ss_pred ccCCC
Q psy15852 260 ATPKP 264 (661)
Q Consensus 260 a~~k~ 264 (661)
+.++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98865
No 241
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.7e-14 Score=121.58 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=55.2
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 591 EAKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 591 ~~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
...++|||+|||+++||+||+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999975 7999999999999999998643
No 242
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-14 Score=124.23 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=74.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+|++.++..+.|+.|.|.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 3579999999999999999999999999888 677777789999999999999999999999447899999999999988
Q ss_pred CCCC
Q psy15852 263 KPEP 266 (661)
Q Consensus 263 k~~~ 266 (661)
+...
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6643
No 243
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.5e-14 Score=121.64 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCee--------EEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIE--------NVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~--------~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i 170 (661)
..+++|.++++++++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++| +..+++..|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~ 90 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA----VEWFDGKDF 90 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHH----HHHHTTCEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHH----HHHcCCCcc
Confidence 34455555555999999999999999999 699999988999999999999999999999 888999999
Q ss_pred cceeehhhhhhccC
Q psy15852 171 NNKKIEAKKAKAKS 184 (661)
Q Consensus 171 ~g~~i~v~~~~~~~ 184 (661)
.|+.|.|.++.++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999987654
No 244
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=1.1e-13 Score=119.78 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=69.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCC-CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFG-NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 9999998643 47999999999999999999886 67899999999998
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=122.09 Aligned_cols=81 Identities=11% Similarity=0.242 Sum_probs=72.3
Q ss_pred ccCCeeEecCCCccCCHHHHH----HHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIK----AHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
+..++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.+ +..+.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345799999999999999876 6999999999998864 4788999999999999999999887 6899999999
Q ss_pred EEeccCCCC
Q psy15852 257 VKKATPKPE 265 (661)
Q Consensus 257 V~~a~~k~~ 265 (661)
|.|+..+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 246
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=9e-14 Score=120.09 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=70.8
Q ss_pred hccCCeeEecCCCcc-CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC---CCccCCeEEE
Q psy15852 181 KAKSGKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP---KQKINDKEVD 256 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~---~~~~~g~~i~ 256 (661)
.+..++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|.+|++.+ +..+.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 344689999999998 99999999999999999999964 4899999999999999999975 3579999999
Q ss_pred EEeccCCCCC
Q psy15852 257 VKKATPKPEP 266 (661)
Q Consensus 257 V~~a~~k~~~ 266 (661)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876643
No 247
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5.2e-14 Score=119.62 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+++++.++.+|+++|||||+|.+.++|++| +..+++..|.|+.|.|.+
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A----i~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA----VIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHH----HHHTTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHH----HHHhCCCeeCCeEEEEEE
Confidence 3444444555999999999999999999999999888999999999999999999999 889999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7654
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=113.57 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=69.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 345899999999999999999999999999999997 449999999999999999975 78999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88654
No 249
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-14 Score=123.57 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=75.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCC---eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGN---IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
...++|||+|||+++++++|+++|++||. |..|.|++++. |+++|||||+|.+.++|.+||+..+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 34578999999999999999999999998 89999999987 999999999999999999999955789999999999
Q ss_pred eccCCC
Q psy15852 259 KATPKP 264 (661)
Q Consensus 259 ~a~~k~ 264 (661)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987654
No 250
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=9.8e-14 Score=119.88 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=54.3
Q ss_pred cCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 591 EAKNKMVSHPGIVD-KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 591 ~~~~~l~v~nlp~~-~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
...++|||+|||++ +|++||+++|++||.|.+|+|++ +||||||+|.+.++|.+|++.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHh
Confidence 34689999999998 99999999999999999999974 4799999999999999999964
No 251
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=125.71 Aligned_cols=81 Identities=25% Similarity=0.394 Sum_probs=73.0
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
++++|.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|.+| +..+++..|.|+.|.|.+
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA----IAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHH----HHHTTTEECSSCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH----HHHhCCCEECCeEEEEEE
Confidence 4455555555999999999999999999999999999999999999999999999999 888999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 252
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.45 E-value=6.4e-14 Score=120.00 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~ 653 (661)
.++|||+|||+++++++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|.+|++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 5789999999999999999999999999999999998 89999999999999999999999
No 253
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=115.21 Aligned_cols=79 Identities=25% Similarity=0.555 Sum_probs=68.4
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKAT 261 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~ 261 (661)
...++|||+|||.++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999864 689999999999999865433 456799999999998
Q ss_pred CCCCC
Q psy15852 262 PKPEP 266 (661)
Q Consensus 262 ~k~~~ 266 (661)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 254
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.45 E-value=1.9e-13 Score=114.57 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=69.8
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.|+++|+| ++++++|+++|++||+|.+|+|+++ +++++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a----~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERA----CRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHH----HHHHTTCCBTTBCCCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHH----HHHhCCCEECCcEEEEE
Confidence 3445555555 9999999999999999999999984 689999999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 887643
No 255
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=5.6e-14 Score=118.65 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=69.6
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+++++.++.+++++|||||+|.++++|++| +..+++..|.|++|.|.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A----i~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA----VIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHH----HHHhCCCeECCcEEEEEe
Confidence 3444444555999999999999999999999999988999999999999999999999 888999999999999987
Q ss_pred hh
Q psy15852 180 AK 181 (661)
Q Consensus 180 ~~ 181 (661)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 256
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=120.69 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=73.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc--------CC
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI--------ND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~--------~g 252 (661)
...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.+ +..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345899999999999999999999999999999999998 8999999999999999999999976 5666 68
Q ss_pred eEEEEEeccCC
Q psy15852 253 KEVDVKKATPK 263 (661)
Q Consensus 253 ~~i~V~~a~~k 263 (661)
++|.|.++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 257
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=6.2e-14 Score=119.64 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=69.6
Q ss_pred CCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 99 KNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDP-NTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 99 ~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~-~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
..+.|+++|++ ++++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|.+| + .+++..+.|+.|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A----i-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA----L-SLNEESLGNRRIR 91 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHH----H-HTTTCCBTTBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHH----H-hcCCCEECCeEEE
Confidence 34555555555 999999999999999 9999999998 5899999999999999999998 7 8999999999999
Q ss_pred hhhhhcc
Q psy15852 177 AKKAKAK 183 (661)
Q Consensus 177 v~~~~~~ 183 (661)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9988765
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=1.8e-13 Score=126.89 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...+|+|.++++++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA----MRYINGTRLDDRIIRT 113 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH----HHHTTTSEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHhCCCEECCeEEEE
Confidence 334555555555999999999999999999999999999999999999999999999999 8889999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++.+
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 98875
No 259
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=127.61 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=72.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeE--EEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe----eecce
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIEN--VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH----VINNK 173 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~--v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~----~i~g~ 173 (661)
.+++|.+|++++++++|+++|++||.|.. |+|++|+.||++||||||+|.+. +|.+| +..+++. .+.|+
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~A----i~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQL----LQILQALHPPLTIDGK 98 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHH----HHHHTTCCCSCCGGGC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHH----HHHhcCCCCCccCCCE
Confidence 44444444459999999999999999977 99999999999999999999999 99999 9999999 99999
Q ss_pred eehhhhhhccCCe
Q psy15852 174 KIEAKKAKAKSGK 186 (661)
Q Consensus 174 ~i~v~~~~~~~~~ 186 (661)
.|.|.++.+..+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 260
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-14 Score=128.14 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=74.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+.++..|+|+.|.|.++.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 34799999999999999999999999999886666667789999999999999999999999557899999999999876
Q ss_pred CC
Q psy15852 263 KP 264 (661)
Q Consensus 263 k~ 264 (661)
+.
T Consensus 104 ~~ 105 (124)
T 1wel_A 104 KG 105 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 261
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=1.6e-13 Score=119.25 Aligned_cols=73 Identities=15% Similarity=0.455 Sum_probs=67.4
Q ss_pred CCeeEecCCCcc-CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 184 SGKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 184 ~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
.++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.+ +..++|+.|.|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 379999999999 999999999999999999998 4899999999999999999775 789999999999998
Q ss_pred CCC
Q psy15852 262 PKP 264 (661)
Q Consensus 262 ~k~ 264 (661)
++.
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 262
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=2.9e-14 Score=119.16 Aligned_cols=79 Identities=24% Similarity=0.419 Sum_probs=69.5
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.+ |.+| +..+++..+.|++|.|.++
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a----~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEA----IAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHH----HHTSCSSCCSSSSCSEEEC
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHH----HHHhCCCEECCeEEEEEEc
Confidence 4555555669999999999999999999999999999999999999999999 9999 8999999999999999998
Q ss_pred hccC
Q psy15852 181 KAKS 184 (661)
Q Consensus 181 ~~~~ 184 (661)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7643
No 263
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=8.8e-14 Score=120.56 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=55.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH
Q psy15852 594 NKMVSHPG----IVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD----TES----LEKASV 653 (661)
Q Consensus 594 ~~l~v~nl----p~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~----~e~----A~~A~~ 653 (661)
++|||+|| |+.++|++|+++|++||+|.+|+++.|+.||+|+|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 9999999999999999999999999999999999999999996 444 788877
No 264
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=118.55 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...+++|.++++++++++|+++|++||+|.+|+|+.++ +++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQA----ISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHH----HHHhCCCEeCCCEEEE
Confidence 34566666666699999999999999999999999987 499999999999999999999 8889999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++..
T Consensus 89 ~~a~~ 93 (114)
T 2do0_A 89 KMDER 93 (114)
T ss_dssp EECSC
T ss_pred EEccc
Confidence 98764
No 265
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=116.08 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=70.9
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+.+++++|+++|++||+|..|.++++ +|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34579999999999999999999999999999999753 899999999999999999875 68899999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88654
No 266
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=121.05 Aligned_cols=80 Identities=26% Similarity=0.513 Sum_probs=71.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+++|.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| +.. ++..|.|+.|.|.+
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A----i~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA----MAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHH----HTS-CSEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHH----HHh-CCcEECCEEEEEEE
Confidence 4555555555999999999999999999999999999999999999999999999997 665 99999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 87654
No 267
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=116.79 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++. .++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAA----LAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHH----HHHHTTEEETTEEEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHH----HHHhCCCCcCCCeEEEE
Confidence 34555555555999999999999999999999999854 4799999999999999999 88899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 987654
No 268
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1e-13 Score=117.26 Aligned_cols=77 Identities=19% Similarity=0.461 Sum_probs=69.2
Q ss_pred ccCCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 182 AKSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 182 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
+..++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.+ +..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999998 99999999999999999999983 789999999999999999975 6889999999999
Q ss_pred ccCCCCC
Q psy15852 260 ATPKPEP 266 (661)
Q Consensus 260 a~~k~~~ 266 (661)
+.++..+
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 269
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=113.77 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=68.4
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP 262 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~ 262 (661)
..++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+|++..+..++|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 34799999999999999999999999999987 44555444 99999999999999999447899999999999877
Q ss_pred CCCC
Q psy15852 263 KPEP 266 (661)
Q Consensus 263 k~~~ 266 (661)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=119.97 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCcCCHHHHH---HHhhcCCCeeEEEEeeCCCCC---CcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 99 KNKMVSHPGIVHKITEELK---EHFSKYGEIENVTLKSDPNTG---RSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~---~~F~~~G~I~~v~l~~~~~tg---~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
..++++.++++++++++|+ ++|++||+|.+|+|++++.++ +++|||||+|.+.++|++| +..+|+..|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~A----i~~lng~~~~g 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA----IQCVNNVVVDG 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHH----HHHHTTEEETT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHH----HHHhCCCEECC
Confidence 4567777777799999999 999999999999999987654 5669999999999999999 89999999999
Q ss_pred eeehhhhhhccC
Q psy15852 173 KKIEAKKAKAKS 184 (661)
Q Consensus 173 ~~i~v~~~~~~~ 184 (661)
++|.|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 271
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=115.96 Aligned_cols=77 Identities=21% Similarity=0.174 Sum_probs=68.2
Q ss_pred cEEEEcCCCcCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 101 KMVSHPGIVHKITEELK----EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~----~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
++++.++++++++++|+ ++|++||+|.+|+|+.++.+ ||||||+|.+.++|++| +..+|+..+.|++|.
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~A----i~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGA----VNSLHRYKIGSKKIL 83 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHH----HHHHTTEEETTEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHH----HHHhCCCEECCeEEE
Confidence 44444445599999999 99999999999999998764 89999999999999999 899999999999999
Q ss_pred hhhhhccC
Q psy15852 177 AKKAKAKS 184 (661)
Q Consensus 177 v~~~~~~~ 184 (661)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99987654
No 272
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=116.78 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
+.++|||+|||++++|++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|++.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999863 789999999999999999864
No 273
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.44 E-value=1.2e-13 Score=123.12 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=72.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+|+|.++++++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++| +..+++..|.|+.|.|.+
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA----MEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHH----HHHHTTCBSSSSBCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHhCCCeeCCeEEEEEE
Confidence 3444445555999999999999999999999999998999999999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87653
No 274
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.3e-13 Score=113.54 Aligned_cols=76 Identities=16% Similarity=0.369 Sum_probs=68.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcC--CCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQF--GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~ 258 (661)
...++|||+|||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|++.+ +..+.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345899999999999999999999999 999999874 679999999999999999965 688999999999
Q ss_pred eccCCCC
Q psy15852 259 KATPKPE 265 (661)
Q Consensus 259 ~a~~k~~ 265 (661)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 275
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.7e-13 Score=118.73 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=65.0
Q ss_pred cEEEEcC----CCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEee----hhhHHHhhHHHHH--HhCCeee
Q psy15852 101 KMVSHPG----IVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD----TESLEKASVEDVI--AEGNHVI 170 (661)
Q Consensus 101 ~~~~~~~----~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~----~e~A~~A~~~~~~--~~~~~~i 170 (661)
+++|.++ ++.+++++|+++|++||+|.+|.++.|+.||+++|||||+|.+ +++|.+|...++. .+++..|
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 4566666 6799999999999999999999999999999999999999997 5553322222277 6899999
Q ss_pred cceeehhhhh
Q psy15852 171 NNKKIEAKKA 180 (661)
Q Consensus 171 ~g~~i~v~~~ 180 (661)
.|++|.|..-
T Consensus 84 ~Gr~irV~ln 93 (136)
T 2j8a_A 84 MGFKFEVILN 93 (136)
T ss_dssp TTEEEEEEEC
T ss_pred cCcEEEEEEC
Confidence 9999998643
No 276
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.3e-13 Score=115.70 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|++++. .++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRA----REKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHH----HHHhCCCEECCEEEEEE
Confidence 34455555555999999999999999999999999864 4999999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 987654
No 277
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=2e-13 Score=119.63 Aligned_cols=81 Identities=10% Similarity=0.206 Sum_probs=73.4
Q ss_pred hccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEe
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKK 259 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~ 259 (661)
.+..++|||+|||+.+++++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|++.+ +..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999876 455999999999999999999965 7899999999999
Q ss_pred ccCCC
Q psy15852 260 ATPKP 264 (661)
Q Consensus 260 a~~k~ 264 (661)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98754
No 278
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=115.15 Aligned_cols=78 Identities=14% Similarity=0.358 Sum_probs=68.4
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCC-eEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-C-CccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGN-IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-K-QKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~-~~~~g~~i~V~ 258 (661)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.+ + ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34579999999999999999999999999 6666652 4899999999999999999876 6 78999999999
Q ss_pred eccCCCCC
Q psy15852 259 KATPKPEP 266 (661)
Q Consensus 259 ~a~~k~~~ 266 (661)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99887543
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=1.7e-13 Score=116.12 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=73.6
Q ss_pred hccCCeeEecCCCccCCHHHHH----HHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEE
Q psy15852 181 KAKSGKIFVGGLSPEMKDEEIK----AHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEV 255 (661)
Q Consensus 181 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i 255 (661)
.+..++|||+|||.++++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|++.+ +..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999999874 4778999999999999999999975 789999999
Q ss_pred EEEeccCCCC
Q psy15852 256 DVKKATPKPE 265 (661)
Q Consensus 256 ~V~~a~~k~~ 265 (661)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 280
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=9.3e-14 Score=118.23 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCC
Q psy15852 592 AKNKMVSHPGIV-DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656 (661)
Q Consensus 592 ~~~~l~v~nlp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~ 656 (661)
+.++|||+|||+ ++||+||+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHc
Confidence 467899999999 9999999999999999999999975 4799999999999999999654
No 281
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=2.1e-13 Score=121.25 Aligned_cols=79 Identities=24% Similarity=0.433 Sum_probs=71.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++| + .+++..|.|+.|.|.+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A----~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA----V-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHH----H-TTTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHH----H-hcCCCeECCeEEEEEE
Confidence 4555555556999999999999999999999999988999999999999999999998 7 8999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.+.
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 282
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=2.2e-13 Score=113.43 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=52.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~ 653 (661)
..++|||+|||+++||++|+++|++||.|.+|+|+++ +||||||+|.+.++|.++..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~ 66 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC
Confidence 4689999999999999999999999999999999974 79999999999999996543
No 283
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.9e-13 Score=116.86 Aligned_cols=76 Identities=12% Similarity=0.299 Sum_probs=69.2
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||.++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|+..+ +..++|+.|.|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 345899999999999999999999999999999996 35899999999999999999875 78999999999998
Q ss_pred cCC
Q psy15852 261 TPK 263 (661)
Q Consensus 261 ~~k 263 (661)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 284
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=112.65 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=68.8
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++| .|.+|+|+++ .+|+++|||||+|.+.++|++| +. +++..|.|+.|.|.+
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A----~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQA----LK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHH----HH-SCSEEETTEEEEEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHH----HH-hCCceeCCcEEEEEE
Confidence 445555555599999999999999 9999999998 6799999999999999999998 77 999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8765
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=3.2e-13 Score=120.10 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=70.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|+.++ +|+++|||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKA----MKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHH----HHHHTTEESSSCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHH----HHHcCCCEECCcEEEEEE
Confidence 344444445599999999999999999999999998 899999999999999999999 888999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.+.
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8754
No 286
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=6.9e-13 Score=127.27 Aligned_cols=79 Identities=14% Similarity=0.297 Sum_probs=74.0
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k 263 (661)
.++|||+|||+++++++|+++|++||+|..|.++++.. +.++|||||+|.+.++|.+|++.++..++|+.|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 37899999999999999999999999999999998764 88999999999999999999998888999999999998764
No 287
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=109.91 Aligned_cols=74 Identities=24% Similarity=0.458 Sum_probs=67.7
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC--CCccCCeEEEEEe
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP--KQKINDKEVDVKK 259 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~--~~~~~g~~i~V~~ 259 (661)
+..++|||+|||..+++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|++.+ +..++|++|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 4458999999999999999999999999999999986 3899999999999999999975 5789999999999
Q ss_pred cc
Q psy15852 260 AT 261 (661)
Q Consensus 260 a~ 261 (661)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 288
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=1.9e-13 Score=115.65 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=69.7
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 35799999999999999999999999988766 335889999999999999999999976 578999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 289
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=7.4e-13 Score=112.18 Aligned_cols=75 Identities=19% Similarity=0.435 Sum_probs=68.6
Q ss_pred hccCCeeEecCCCc-cCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEE
Q psy15852 181 KAKSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVK 258 (661)
Q Consensus 181 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~ 258 (661)
.+..++|||+|||. ++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.+ +..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44568999999998 99999999999999999999983 799999999999999999976 678999999999
Q ss_pred eccCC
Q psy15852 259 KATPK 263 (661)
Q Consensus 259 ~a~~k 263 (661)
++.++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98765
No 290
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=3.4e-13 Score=118.19 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=64.5
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeE-----EE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKE-----VD 256 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~-----i~ 256 (661)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.+ +..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3579999999999999999999999999999999764 99999999999999999976 68899988 77
Q ss_pred EEeccCCC
Q psy15852 257 VKKATPKP 264 (661)
Q Consensus 257 V~~a~~k~ 264 (661)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77766543
No 291
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=115.71 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..+++|.++++++++++|+++|++||+|.+|+|+.+ ++++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDA----VYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHH----HHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHH----HHHcCCCEECCeEEEEE
Confidence 344555555559999999999999999999999764 56899999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 987653
No 292
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=114.73 Aligned_cols=78 Identities=10% Similarity=0.299 Sum_probs=69.3
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
+..++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999996 66654 467999999999999999999875 78999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 293
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=115.91 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=67.3
Q ss_pred CcEEEEcCCCcC------CHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 100 NKMVSHPGIVHK------ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 100 ~~~~~~~~~~~~------te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
.++++.++++.+ ++++|+++|++||+|.+|+|+ +.+|+++|||||+|.+.++|.+| +..+|+..+.|+
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~A----i~~l~g~~~~g~ 89 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDA----VKNADGYKLDKQ 89 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHH----HHHCSSEECSTT
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHH----HHHhCCcccCCC
Confidence 344444444577 789999999999999999998 35799999999999999999999 899999999998
Q ss_pred -eehhhhhhcc
Q psy15852 174 -KIEAKKAKAK 183 (661)
Q Consensus 174 -~i~v~~~~~~ 183 (661)
+|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999888653
No 294
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=5.1e-13 Score=125.07 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=72.2
Q ss_pred cEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhh
Q psy15852 101 KMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA 180 (661)
Q Consensus 101 ~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~ 180 (661)
+|+|.+|++.+++++|+++|++||+|.+|.|+.++.+|+++|||||+|.+.++|++| +..+++..|.|+.|.|.++
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA----KEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHH----HHHhCCCEECCEEEEEEEe
Confidence 445555555999999999999999999999999999999999999999999999999 8899999999999999998
Q ss_pred hccC
Q psy15852 181 KAKS 184 (661)
Q Consensus 181 ~~~~ 184 (661)
.++.
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7653
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=5.7e-13 Score=115.28 Aligned_cols=76 Identities=16% Similarity=0.396 Sum_probs=69.4
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
...++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345899999999999999999999999999999996 799999999999999999975 78999999999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
.++..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87653
No 296
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=116.61 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=68.8
Q ss_pred ccCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCC---CCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK---SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
...++|||+|||+++++++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|++||+.+ ..++|+.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3468999999999999999999999999999 888888877 799999999999999999999987 34677777776
Q ss_pred eccC
Q psy15852 259 KATP 262 (661)
Q Consensus 259 ~a~~ 262 (661)
.+.+
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5443
No 297
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.7e-13 Score=116.43 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|++.+ +..+.|+.|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999999864 4889999999999999999976 6889999999999987
Q ss_pred CC
Q psy15852 263 KP 264 (661)
Q Consensus 263 k~ 264 (661)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 298
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=2.9e-13 Score=133.53 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=71.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCC--CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYG--EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G--~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
.+|||.+|++++|+++|+++|++|| .|.+|+|++++.++++||||||+|.+.++|++| +..+|+..|.|+.|.|
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~A----i~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL----MDLLPKRELHGQNPVV 144 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHH----HTTSTTSCBTTBCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHH----HHHcCCCeECCEEeEE
Confidence 3455555555999999999999999 999999999999999999999999999999999 8889999999999999
Q ss_pred hhhhc
Q psy15852 178 KKAKA 182 (661)
Q Consensus 178 ~~~~~ 182 (661)
.++.+
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 88764
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=5.6e-13 Score=126.03 Aligned_cols=81 Identities=19% Similarity=0.391 Sum_probs=75.8
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35799999999999999999999999999999999988 8999999999999999999999976 689999999999998
Q ss_pred CCC
Q psy15852 262 PKP 264 (661)
Q Consensus 262 ~k~ 264 (661)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 754
No 300
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.5e-13 Score=116.17 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=68.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|++++ +.++|||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRA----REKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHH----HHHHTTCEETTEECEEEE
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHH----HHHcCCCEECCEEEEEEE
Confidence 444454455599999999999999999999999985 45999999999999999999 888999999999999998
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.2e-12 Score=109.29 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=67.9
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|| ++++++|+++|++||+|..|.|. .++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4579999996 89999999999999999999984 46899999999999999999886 678999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 302
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.9e-13 Score=113.91 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=69.1
Q ss_pred ccCCeeEe--cCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc-----CCe
Q psy15852 182 AKSGKIFV--GGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI-----NDK 253 (661)
Q Consensus 182 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~-----~g~ 253 (661)
.+.++||| +||++.+++++|+++|++||.|.+|.++. .+|||||+|.+.++|++|++.+ +..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 44678999 67999999999999999999999998864 2799999999999999999987 5666 689
Q ss_pred EEEEEeccCCCCC
Q psy15852 254 EVDVKKATPKPEP 266 (661)
Q Consensus 254 ~i~V~~a~~k~~~ 266 (661)
+|.|.++...+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999999876543
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.6e-13 Score=118.89 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|||+|||+++|+++|+++|++||.|.+|.+..+..+|+++|||||+|.+.++|.+|++.++..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999954444433337999999999999999999999987654
No 304
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=1.3e-12 Score=112.00 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCcEEEEcCCC------cCCHHHHHHHhhcCCCeeEEEEeeCCCC-CCcccEEEEEEeehhhHHHhhHHHHHHhCCeeec
Q psy15852 99 KNKMVSHPGIV------HKITEELKEHFSKYGEIENVTLKSDPNT-GRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN 171 (661)
Q Consensus 99 ~~~~~~~~~~~------~~te~~L~~~F~~~G~I~~v~l~~~~~t-g~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~ 171 (661)
..++|++.|+. +-++++|+++|++||+|.+|+|++++.+ ++++|||||+|.++++|.+| +..+|+..+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~A----i~~lnG~~~~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKA----VVDLNGRYFG 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHH----HHHHTTCEET
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHH----HHHHCCCEEC
Confidence 34566666664 2378999999999999999999998764 68999999999999999999 9999999999
Q ss_pred ceeehhhhhhc
Q psy15852 172 NKKIEAKKAKA 182 (661)
Q Consensus 172 g~~i~v~~~~~ 182 (661)
|+.|.|.++.+
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999987754
No 305
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.1e-12 Score=112.09 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=64.2
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||.|.+|+++ +++|||||+|.+.++|.+| +..+++..+.|+.|.|.+
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVC----IVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHH----HHHHTTCEETTEECCCCB
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHH----HHHhCCCeECCeEEEEEe
Confidence 344444444599999999999999999999998 3578999999999999999 889999999999999998
Q ss_pred hhc
Q psy15852 180 AKA 182 (661)
Q Consensus 180 ~~~ 182 (661)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 306
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=6.3e-13 Score=114.86 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=54.8
Q ss_pred cCCCeEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 591 EAKNKMVS--HPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 591 ~~~~~l~v--~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
++.++||| +|||+++|+++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC
Confidence 34678999 66999999999999999999999998874 278999999999999999998775
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.9e-13 Score=111.42 Aligned_cols=78 Identities=12% Similarity=0.218 Sum_probs=70.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEE-EeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEec
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKA 260 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a 260 (661)
..++|||+|||+++++++|+++|++||.|..| .++.++.++ .|||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999 588876543 3999999999999999965 78999999999999
Q ss_pred cCCC
Q psy15852 261 TPKP 264 (661)
Q Consensus 261 ~~k~ 264 (661)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=7.5e-13 Score=117.63 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCcCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 98 AKNKMVSHPGIVHKITEELK----EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~----~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
+..+++|.+|++.+++++|+ ++|++||+|.+|.+.+ ++++||||||+|.+.++|.+| +..+|+..|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~A----i~~lng~~l~gr 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAF----VEAFQGYPFQGN 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHH----HHHSTTCCCTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHH----HHHHCCCEeCCC
Confidence 34455555555699999876 7999999999998864 588999999999999999999 999999999999
Q ss_pred eehhhhhhccC
Q psy15852 174 KIEAKKAKAKS 184 (661)
Q Consensus 174 ~i~v~~~~~~~ 184 (661)
+|.|.++..+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999987654
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=8.9e-14 Score=122.15 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeE--------EEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeee
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIEN--------VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~--------v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i 170 (661)
..++++.++++++++++|+++|++||+|.+ |+|+.++.+++++|||||+|.+.++|++| +..+++..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A----i~~l~g~~~ 82 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA----IDWFDGKEF 82 (116)
Confidence 344555555559999999999999999999 99999988999999999999999999999 888999999
Q ss_pred cceeehhhhhhccC
Q psy15852 171 NNKKIEAKKAKAKS 184 (661)
Q Consensus 171 ~g~~i~v~~~~~~~ 184 (661)
.|++|.|.++.++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999988764
No 310
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=111.76 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..+++|.++++++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++| +..+++..|.|+.|.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEA----LNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHH----HHHTSSEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHH----HHHhCCCEeCCeEEEEE
Confidence 3455555555599999999999999977 66776 5699999999999999999999 88899999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 987654
No 311
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.34 E-value=1.2e-12 Score=108.79 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=68.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|||+++++++|+++|++| .|.+|.+. +++|||||+|.+.++|++|++.+ +..+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35789999999999999999999999 99999884 56999999999999999999976 678999999999997
Q ss_pred CCC
Q psy15852 262 PKP 264 (661)
Q Consensus 262 ~k~ 264 (661)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 312
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.34 E-value=8.9e-13 Score=114.15 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCcEEEEcCC-CcCCHHHHHHHhhcCC-CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 98 AKNKMVSHPGI-VHKITEELKEHFSKYG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~-~~~te~~L~~~F~~~G-~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
.....|+|+|+ +++++++|+++|++|| +|..|.|+. +.++|||||+|.+.++|++| +..+|+..+.|+.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~A----i~~lng~~l~Gr~i 97 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEA----LERLNNIEFRGSVI 97 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHH----HHHTTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHH----HHHcCCCEECCeEE
Confidence 34445555555 5999999999999999 899999864 35899999999999999999 89999999999999
Q ss_pred hhhhhhc
Q psy15852 176 EAKKAKA 182 (661)
Q Consensus 176 ~v~~~~~ 182 (661)
.|.++..
T Consensus 98 ~V~~a~~ 104 (111)
T 2jvr_A 98 TVERDDN 104 (111)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9988754
No 313
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=109.94 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeec--ceee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN--NKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~--g~~i 175 (661)
+..++++.++++++++++|+++|++||+|.+|+++.+ +|||||+|.+.++|++| +..+++..+. |+.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A----~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAA----CAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHH----HHHHTTCBCSSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHH----HHHHCCCEeCCCCcEE
Confidence 4456666666669999999999999999999999864 68999999999999999 8889999999 9999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999987754
No 314
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.7e-12 Score=111.02 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=65.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc-----ee
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN-----KK 174 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g-----~~ 174 (661)
.+++|.+|++++++++|+++|++||+|.+|+|+.+ |||||+|.+.++|++| +..+|+..|.| +.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~A----i~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYA----VRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHH----HHHSSSEEEECTTSCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHH----HHHHCcCCccCCcCcceE
Confidence 44555555559999999999999999999999986 7999999999999999 89999999999 99
Q ss_pred ehhhhhhccC
Q psy15852 175 IEAKKAKAKS 184 (661)
Q Consensus 175 i~v~~~~~~~ 184 (661)
|.|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987654
No 315
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=105.58 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHh-CCeeecceeeh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE-GNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~-~~~~i~g~~i~ 176 (661)
...++++.++++++++++|+++|++||+|.+|++++ ++|||||+|.+.++|++| +..+ ++..+.|++|.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a----~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVA----AEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHH----HHTTTTTCEETTEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHH----HHHhcCCeeECCCEEE
Confidence 345566666666999999999999999999999997 378999999999999998 8878 99999999999
Q ss_pred hhhhh
Q psy15852 177 AKKAK 181 (661)
Q Consensus 177 v~~~~ 181 (661)
|.+++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98763
No 316
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=107.54 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|.+|+|+ +|||||+|.+.++|++| +..+++..+.|++|.|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDA----IRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHH----HHHHTTCBCSSCBCEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHH----HHHhcCCccCCcEEEEE
Confidence 3445555555599999999999999999999998 57999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 987654
No 317
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.2e-12 Score=111.81 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=66.5
Q ss_pred CCcEEEEcCC-CcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 99 KNKMVSHPGI-VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 99 ~~~~~~~~~~-~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
..+.||++|+ +++++++|+++|++||+|.+|+|+++ +|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHA----IVSVNGTTIEGHVVKC 93 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHH----HHHcCCCEECCcEEEE
Confidence 3444555555 59999999999999999999999985 78999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 318
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6e-13 Score=110.55 Aligned_cols=58 Identities=28% Similarity=0.454 Sum_probs=53.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC
Confidence 3589999999999999999999999999999999965 789999999999999987654
No 319
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=110.55 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|+.|+ +|+++.++.+++++|||||+|.+.++|++| +..+++..|.|+.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAA----KEAMEDGEIDGNKVTL 86 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHH----HHHhCCCeECCeEEEE
Confidence 445666666666999999999999873 788899888899999999999999999999 8889999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9987754
No 320
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.3e-12 Score=114.51 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
.++|||.|||+++|++||+++|++||.|.+|+|+.+ |||||+|.+.++|.+||++++..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999976 89999999999999999986654
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=3.1e-12 Score=117.53 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=68.5
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC--eEEEEEecc
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND--KEVDVKKAT 261 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g--~~i~V~~a~ 261 (661)
.+|||+||++.+++++|+++|++||+|.+|.|..+ .++|||||+|.+.++|.+|++.+ +..|.| +.|+|.|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 57899999999999999999999999999998653 25889999999999999999987 677855 999999999
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8653
No 322
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=1.2e-12 Score=110.77 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCcCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 98 AKNKMVSHPGIVHKITEELK----EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~----~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
+..++++.++++++++++|+ ++|++||+|.+|++++ ++.++|||||+|.+.++|.+| +..+++..+.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~ 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNA----LRSMQGFPFYDK 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHH----HHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHH----HHHhCCCEECCc
Confidence 34555555555699999999 9999999999999984 478999999999999999999 889999999999
Q ss_pred eehhhhhhccC
Q psy15852 174 KIEAKKAKAKS 184 (661)
Q Consensus 174 ~i~v~~~~~~~ 184 (661)
.|.|.++.++.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987654
No 323
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=110.22 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
+..++++.++++++++++|+++|++||+|.+|+|+++ +|||||+|.+.++|++| +..+++..+.|++|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a----~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIA----KVELDNMPLRGKQLRV 83 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHH----HHHHTTCCBTTBCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHH----HHHhCCCEeCCceEEE
Confidence 3445556556669999999999999999999999864 68999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9988754
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=122.83 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=70.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEE--eccC---CCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETE--MPYD---KSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~--i~~~---~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
..++|||+|||+.+++++|+++|++||.|..+. ++.+ ..+++++|||||+|.+.++|.+|++.+ +..+.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457999999999999999999999999987641 1111 235889999999999999999999975 6899999999
Q ss_pred EEeccCCCC
Q psy15852 257 VKKATPKPE 265 (661)
Q Consensus 257 V~~a~~k~~ 265 (661)
|.++.+...
T Consensus 124 V~~a~~~~~ 132 (143)
T 3egn_A 124 VQFARSARP 132 (143)
T ss_dssp EEECCCSCC
T ss_pred EEECCCCCC
Confidence 999987543
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.31 E-value=1.6e-13 Score=117.21 Aligned_cols=79 Identities=24% Similarity=0.252 Sum_probs=68.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++| +. +++..+.|+.|.|.+
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A----~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKA----LE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHH----HH-GGGCCBTTBCCEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHH----Hh-cCCcEECCcEEEEEE
Confidence 44555555559999999999999999988 7777777899999999999999999998 76 999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87654
No 326
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.31 E-value=4.8e-12 Score=111.94 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=68.1
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcE-EEEEeCCHHHHHHHHHhC-CCccCC--eEEEEEec
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF-CFITFEHESVVIDLLKNP-KQKIND--KEVDVKKA 260 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~~-~~~~~g--~~i~V~~a 260 (661)
-+|||+||++.+|+++|+++|++||.|.+|.++.+ .+|| |||+|.+.++|.+|++.+ +..|.| +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46889999999999999999999999999988753 3688 999999999999999997 678887 99999999
Q ss_pred cCCCC
Q psy15852 261 TPKPE 265 (661)
Q Consensus 261 ~~k~~ 265 (661)
+++.-
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 327
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=3.9e-12 Score=122.06 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 593 ~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
.++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|++..++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999875 99999999999999999999987654
No 328
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.2e-12 Score=103.05 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCe-eEecCCCccCCHHH----HHHHHhcC-CCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEE
Q psy15852 184 SGK-IFVGGLSPEMKDEE----IKAHFAQF-GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVD 256 (661)
Q Consensus 184 ~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~ 256 (661)
..+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.+ +..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999987 55899999 499988 23 99999999999999999986 7899999999
Q ss_pred EEeccCCCCC
Q psy15852 257 VKKATPKPEP 266 (661)
Q Consensus 257 V~~a~~k~~~ 266 (661)
|.+|+.+.+-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999987653
No 329
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=4.9e-12 Score=104.63 Aligned_cols=71 Identities=15% Similarity=0.406 Sum_probs=64.2
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcC----C-------CeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQF----G-------NIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 251 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~ 251 (661)
..++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+..++..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 45799999999999999999999999 8 9999999654 89999999999999999944478999
Q ss_pred CeEEEEEe
Q psy15852 252 DKEVDVKK 259 (661)
Q Consensus 252 g~~i~V~~ 259 (661)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 330
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=8.4e-12 Score=107.02 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=71.4
Q ss_pred ccCCeeEecCCCc-----cCCHHHHHHHHhcCCCeEEEEeccCCCC-CCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeE
Q psy15852 182 AKSGKIFVGGLSP-----EMKDEEIKAHFAQFGNIIETEMPYDKSK-SQRKNFCFITFEHESVVIDLLKNP-KQKINDKE 254 (661)
Q Consensus 182 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~ 254 (661)
..+++|+|+||.. +.++++|+++|++||+|.+|.|++++.+ ++++|||||+|.+.++|.+|++.+ +..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999963 2478999999999999999999988654 688999999999999999999986 68999999
Q ss_pred EEEEeccCC
Q psy15852 255 VDVKKATPK 263 (661)
Q Consensus 255 i~V~~a~~k 263 (661)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998753
No 331
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=4e-12 Score=108.94 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=66.5
Q ss_pred cCCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 97 EAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 97 ~~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
.+..+++|.++++++++++|+++|++||+|.+|+|++ |||||+|.+.++|++| +..+++..|.|+.|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKA----MEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHH----HHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHH----HHHHCCCccCCCEEE
Confidence 3445666666666999999999999999999999874 4999999999999999 888999999999999
Q ss_pred hhhhhccC
Q psy15852 177 AKKAKAKS 184 (661)
Q Consensus 177 v~~~~~~~ 184 (661)
|.++.++.
T Consensus 77 v~~a~~~~ 84 (103)
T 2dgu_A 77 IVFAKPPD 84 (103)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99987654
No 332
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.30 E-value=5.6e-12 Score=106.72 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=65.8
Q ss_pred cCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 97 EAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 97 ~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
....++++.++++ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|.+| +..+++..+.|+.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l 87 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDA----IEXESQEMNFGKKL 87 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHH----HHHHTTSEETTEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHH----HHHcCCCEECCEEE
Confidence 3455666666666 89999999999999999999983 68999999999999999 88899999999999
Q ss_pred hhhhhhcc
Q psy15852 176 EAKKAKAK 183 (661)
Q Consensus 176 ~v~~~~~~ 183 (661)
.|.++.++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99988764
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=7e-12 Score=106.15 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=65.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+.||++|+ ++++++|+++|++||+|.+|+|. +++|||||+|.+.++|++| +..+++..+.|++|.|.+
T Consensus 15 ~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~A----i~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 15 GNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQA----VAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CSEEEEECS-SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHH----HHHTTTEEETTEEEEEEC
T ss_pred CCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHH----HHHhCCCeECCeEEEEEE
Confidence 455666664 99999999999999999999995 4688999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 334
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.29 E-value=4.4e-12 Score=109.67 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
...+.||++|+| ++++++|+++|++||+|.+|+|+ +|||||+|.+.++|++| +..+++..+.|+.|.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKA----IEEVHGKSFANQPLE 96 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHH----HHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHH----HHHcCCCEECCeEEE
Confidence 344556666665 99999999999999999999998 68999999999999999 889999999999999
Q ss_pred hhhhhccC
Q psy15852 177 AKKAKAKS 184 (661)
Q Consensus 177 v~~~~~~~ 184 (661)
|.++.++.
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987654
No 335
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=1.6e-12 Score=113.00 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=64.4
Q ss_pred CcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 100 NKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 100 ~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
.+.||++|+| ++++++|+++|++||+|.+|.|+. ++|||||+|.+.++|++| +..+|+..+.|+.|.|.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~A----i~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKA----FRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHH----HHHHTTCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHH----HHHhCCCEECCeEEEEE
Confidence 3455555555 999999999999999999999874 578999999999999999 99999999999999999
Q ss_pred hhhc
Q psy15852 179 KAKA 182 (661)
Q Consensus 179 ~~~~ 182 (661)
++..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 9875
No 336
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=109.29 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++||+|. ++++. ++++|||||+|.+.++|++| +..+|+..+.|+.|.|.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQA----VSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHH----HHHHTTCCSSSSCCEEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHH----HHHhCCCEECCcEEEEE
Confidence 34555555555999999999999999997 77775 46899999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 987654
No 337
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=2.2e-12 Score=109.00 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=65.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+| +..+++..+.|+.|.|.+
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKN----LEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHH----HHHTTEEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHH----HHHhCCCEECCeEEEEEE
Confidence 445555555599999999999999988766 34589999999999999999999 888999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87654
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.8e-12 Score=103.70 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=66.9
Q ss_pred ecCCCcEEEEcCCC-cCCHHH----HHHHhhcC-CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 96 MEAKNKMVSHPGIV-HKITEE----LKEHFSKY-GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 96 ~~~~~~~~~~~~~~-~~te~~----L~~~F~~~-G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
.++..++|||+|+| .+++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+| +..+++..
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A----~~~l~G~~ 70 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERA----QKRMENED 70 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHH----HHHHTTCC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHH----HHHhcCCc
Confidence 34567779888888 999888 55899999 599988 34 9999999999999999 99999999
Q ss_pred ecceeehhhhhhccCCe
Q psy15852 170 INNKKIEAKKAKAKSGK 186 (661)
Q Consensus 170 i~g~~i~v~~~~~~~~~ 186 (661)
+.||+|.|.+++.++.-
T Consensus 71 l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 71 VFGNRIIVSFTPKNREL 87 (96)
T ss_dssp SSSSCCEEESSCCSCCC
T ss_pred cCCceEEEEecCCCcce
Confidence 99999999999876643
No 339
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=1.2e-11 Score=108.92 Aligned_cols=74 Identities=8% Similarity=0.044 Sum_probs=65.6
Q ss_pred eeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcE-EEEEeCCHHHHHHHHHhC-CCccCC--eEEEEEecc
Q psy15852 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF-CFITFEHESVVIDLLKNP-KQKIND--KEVDVKKAT 261 (661)
Q Consensus 186 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~~-~~~~~g--~~i~V~~a~ 261 (661)
.|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|.+|++.+ +..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 5789999999999999999999999999998642 386 999999999999999986 678877 699999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 340
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.3e-12 Score=106.67 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=66.0
Q ss_pred cCCCcEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 97 EAKNKMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 97 ~~~~~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
++..++++.++++ ++++++|+++|++||+|.+|+|. +|||||+|.+.++|++| +..+++..+.|++|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDA----IECESQEMNFGKKL 75 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHH----HHHHTCSSCBTTTB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHH----HHHcCCCeeCCcEE
Confidence 3445666666666 89999999999999999999994 68999999999999999 88899999999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 999987643
No 341
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=9.5e-12 Score=104.17 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=64.1
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+|+|+++ ||||+|.+.++|++| +..+++..+.|+.|.|.+
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEA----IRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHH----HHHHTTEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHH----HHHhCCCeeCCcEEEEEE
Confidence 44555555559999999999999999999999853 999999999999999 889999999999999999
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87654
No 342
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=103.71 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=63.4
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.++++.++++++++++|+++|++||+|.+| +.++.+++ ||||+|.+.++|++| +. +++..|.|+.|.|.+
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~a----i~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAV----LS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHH----HT-CSCCEETTEECCCBC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHH----Hh-cCCeEECCEEEEEEE
Confidence 455555555599999999999999999987 55566565 999999999999998 77 999999999999998
Q ss_pred hhccC
Q psy15852 180 AKAKS 184 (661)
Q Consensus 180 ~~~~~ 184 (661)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86543
No 343
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.4e-11 Score=104.66 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcC--CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKY--GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~--G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i 175 (661)
...++++.++++++++++|+++|++| |.|.+|+++ +|||||+|.+.++|++| +..+++..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEA----MKALNGKVLDGSPI 81 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHH----HHHHSSEEETTEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHH----HHHhCCCEeCCcEE
Confidence 34455555555599999999999999 899999875 46999999999999999 88899999999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 344
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=103.37 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
...++++.++++++++++|+++|++||+|.+|+|+++ ||||+|.+.++|++| +..+++..+.|+.|.|
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A----~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAA----IAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHH----HHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHH----HHHhCCCEECCcEEEE
Confidence 3455666666669999999999999999999999853 999999999999999 8899999999999999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++.+..
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987653
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.25 E-value=7.4e-12 Score=114.98 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=66.9
Q ss_pred cEEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc--eeehh
Q psy15852 101 KMVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN--KKIEA 177 (661)
Q Consensus 101 ~~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g--~~i~v 177 (661)
..|||+|++ .+++++|+++|++||+|.+|+|..+ +++|||||+|.+.++|++| +..+++..|.| ++|.|
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~A----i~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHA----KLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHH----HHHSTTBCSSSSCSCEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHH----HHHhCCCEecCCCcEEEE
Confidence 346677766 9999999999999999999999753 3689999999999999999 99999999966 99999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.+++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.24 E-value=8.7e-12 Score=108.18 Aligned_cols=71 Identities=20% Similarity=0.412 Sum_probs=62.9
Q ss_pred cEEEEcCCC-c-CCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 101 KMVSHPGIV-H-KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 101 ~~~~~~~~~-~-~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
+.||++++| + +++++|+++|++||+|.+|+| ++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A----~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAA----VLGENGRVLAGQTLDIN 95 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHH----HHHHTTCEETTEECCEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHH----HHHcCCCEECCeEEEEE
Confidence 455555555 8 999999999999999999999 578999999999999999 88999999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++.++
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98743
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=2.4e-11 Score=106.94 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=52.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHhCCcc
Q psy15852 595 KMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGF-AFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~-aFV~F~~~e~A~~A~~~~~~~ 658 (661)
.|||.|||+.+|+++|+++|++||.|.+|+|+.. +|| |||+|.+.++|.+|++.++.+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999752 286 999999999999999987654
No 348
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.24 E-value=9.7e-12 Score=103.21 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..++++.++++++++++|+++|++| +|.+|+|. +++|||||+|.++++|++| +..+++..+.|++|.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~A----i~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNA----IQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHH----HHHHTTEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHH----HHHhCCCeECCcEEEEE
Confidence 3556666666699999999999999 99999985 5799999999999999999 88999999999999999
Q ss_pred hhhcc
Q psy15852 179 KAKAK 183 (661)
Q Consensus 179 ~~~~~ 183 (661)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88653
No 349
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.24 E-value=9.8e-12 Score=134.17 Aligned_cols=80 Identities=16% Similarity=0.395 Sum_probs=71.6
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKK 179 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~ 179 (661)
.+|||.+|++.+|+++|+++|++||+|..|.|+.++.+++++|||||+|.+.++|.+| +..+|+..|.|+.|.|.+
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A----i~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA----YKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH----HHHcCCCEECCEEEEEEE
Confidence 3444444445999999999999999999999999998999999999999999999999 889999999999999988
Q ss_pred hhcc
Q psy15852 180 AKAK 183 (661)
Q Consensus 180 ~~~~ 183 (661)
+.+.
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 7753
No 350
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=6e-12 Score=105.61 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCC-eeecceee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGE-IENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN-HVINNKKI 175 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~-I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~-~~i~g~~i 175 (661)
...++++.++++++++++|+++|++||. |..+.+. ++|||||+|.+.++|++| +..+++ ..+.|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A----~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRA----IETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHH----HHHHTTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHH----HHHccCCeeECCEEE
Confidence 3456666666669999999999999999 6666663 578999999999999999 889999 99999999
Q ss_pred hhhhhhccC
Q psy15852 176 EAKKAKAKS 184 (661)
Q Consensus 176 ~v~~~~~~~ 184 (661)
.|.++.++.
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999987654
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.23 E-value=1.6e-11 Score=108.61 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=65.5
Q ss_pred EEEEcCCC-cCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccE-EEEEEeehhhHHHhhHHHHHHhCCeeecc--eeehh
Q psy15852 102 MVSHPGIV-HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGF-AFIVFKDTESLEKASVEDVIAEGNHVINN--KKIEA 177 (661)
Q Consensus 102 ~~~~~~~~-~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~-afV~F~~~e~A~~A~~~~~~~~~~~~i~g--~~i~v 177 (661)
.||++|++ .+|+++|+++|++||+|.+|+|+.+ ++|| |||+|.+.++|++| +..+||..|.| +.|+|
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~A----i~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHA----KLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHH----HHHHTTCEEETTEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHH----HHHcCCCeecCCCcEEEE
Confidence 45566665 9999999999999999999999863 3688 99999999999999 99999999988 89999
Q ss_pred hhhhccC
Q psy15852 178 KKAKAKS 184 (661)
Q Consensus 178 ~~~~~~~ 184 (661)
.++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=1.2e-11 Score=109.04 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=67.6
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~ 261 (661)
..++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4589999996 69999999999999999999985 46899999999999999999875 789999999999998
Q ss_pred CCCC
Q psy15852 262 PKPE 265 (661)
Q Consensus 262 ~k~~ 265 (661)
++..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8654
No 353
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=104.73 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEE-EEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeeh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENV-TLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIE 176 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v-~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~ 176 (661)
...++++.++++++++++|+++|++||+|.+| .|+.++.++ .|||+|.+.++|++| +..+++..+.|++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~A----i~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQA----LDKLNGFQLENFTLK 85 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHH----HHHHTTCBCSSCBCE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHH----HHHhCCCEECCcEEE
Confidence 34566777677799999999999999999999 488876543 399999999999999 889999999999999
Q ss_pred hhhhhcc
Q psy15852 177 AKKAKAK 183 (661)
Q Consensus 177 v~~~~~~ 183 (661)
|.++.++
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9988765
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=2.2e-11 Score=119.43 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=75.3
Q ss_pred CCeeecceeehhhhh---------hccCCeeEecCCCccC---------CHHHHHHHHhcCCCeEEEEeccCCCCCCcCc
Q psy15852 166 GNHVINNKKIEAKKA---------KAKSGKIFVGGLSPEM---------KDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227 (661)
Q Consensus 166 ~~~~i~g~~i~v~~~---------~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g 227 (661)
+...+.|+....... ....++|||+||+..+ ++++|+++|++||+|.+|.|+. ++|
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG 180 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKN 180 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGT
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCC
Confidence 445555665544332 2345899999999998 7999999999999999999975 489
Q ss_pred EEEEEeCCHHHHHHHHHhC-CCcc------------CCeEEEEEeccCCCCC
Q psy15852 228 FCFITFEHESVVIDLLKNP-KQKI------------NDKEVDVKKATPKPEP 266 (661)
Q Consensus 228 ~afV~f~~~~~A~~Al~~~-~~~~------------~g~~i~V~~a~~k~~~ 266 (661)
||||+|.+.++|++|++.+ +..| .|+.|.|+||.+.+.+
T Consensus 181 ~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 181 CGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999999999987 5777 8999999999887654
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.20 E-value=3.3e-12 Score=116.54 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEE--------EEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENV--------TLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v--------~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
+..+++|.++++++++++|+++|++||.|.+| ++. .+++++|||||+|.+.++|.+| +..+|+..
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~A----i~~lng~~ 116 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKA----LKEANGYV 116 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHH----HHHHTTBE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHH----HHHhCCCE
Confidence 44455555555699999999999999998774 333 3589999999999999999999 88999999
Q ss_pred ecceeehhhhhhcc
Q psy15852 170 INNKKIEAKKAKAK 183 (661)
Q Consensus 170 i~g~~i~v~~~~~~ 183 (661)
|.|+.|.|.++.+.
T Consensus 117 ~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 117 LFGKPMVVQFARSA 130 (143)
T ss_dssp ETTEECEEEECCCS
T ss_pred eCCcEEEEEECCCC
Confidence 99999999988653
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.19 E-value=1.9e-11 Score=107.80 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAK 178 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~ 178 (661)
..+.|||+|+ ++++++|+++|++||+|.+|+|. +++|||||+|.+.++|++| +..+++..+.|+.|.|.
T Consensus 38 ~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~A----i~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 38 KGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQA----VAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHH----HHHHTTCBCSSCBCEEE
T ss_pred CCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHH----HHHhCCCEECCeEEEEE
Confidence 3456666664 79999999999999999999996 4689999999999999999 88999999999999999
Q ss_pred hhhccC
Q psy15852 179 KAKAKS 184 (661)
Q Consensus 179 ~~~~~~ 184 (661)
++.++.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 987653
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.17 E-value=3.2e-11 Score=99.65 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCC
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKY----G-------EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGN 167 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~----G-------~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~ 167 (661)
.+++++.++++++++++|+++|++| | +|.+|++.++ +|||||+|.++++|.+| + .+++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A----~-~l~g 74 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQA----M-AFDG 74 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHH----G-GGTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHH----H-hcCC
Confidence 3455555555699999999999999 8 9999999864 78999999999999998 8 9999
Q ss_pred eeecceeehhhh
Q psy15852 168 HVINNKKIEAKK 179 (661)
Q Consensus 168 ~~i~g~~i~v~~ 179 (661)
..+.|+.|.|.+
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999998864
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=1.1e-10 Score=100.13 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=69.1
Q ss_pred cCCeeEecCC--CccCC--------HHHHHHHHhcCCCeEEEEeccCCCC--CCcCcEEEEEeCCHHHHHHHHHhC-CCc
Q psy15852 183 KSGKIFVGGL--SPEMK--------DEEIKAHFAQFGNIIETEMPYDKSK--SQRKNFCFITFEHESVVIDLLKNP-KQK 249 (661)
Q Consensus 183 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~~-~~~ 249 (661)
+++.|.|.|+ |..+. +++|++.|++||+|.+|.|++++.+ ++++|+|||+|.+.++|.+|++.+ +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899998 43443 4699999999999999999988764 468999999999999999999987 689
Q ss_pred cCCeEEEEEeccCC
Q psy15852 250 INDKEVDVKKATPK 263 (661)
Q Consensus 250 ~~g~~i~V~~a~~k 263 (661)
++||.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2e-10 Score=99.84 Aligned_cols=80 Identities=9% Similarity=0.232 Sum_probs=67.3
Q ss_pred ccCCeeEecCCCccC-----------CHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCc
Q psy15852 182 AKSGKIFVGGLSPEM-----------KDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQK 249 (661)
Q Consensus 182 ~~~~~lfV~nLp~~~-----------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~ 249 (661)
..+++|+|+||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.+ +..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 346899999994332 26899999999999999966 443 37999999999999999999887 689
Q ss_pred cCCeEEEEEeccCCCC
Q psy15852 250 INDKEVDVKKATPKPE 265 (661)
Q Consensus 250 ~~g~~i~V~~a~~k~~ 265 (661)
++|++|.|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999988654
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=7.9e-11 Score=100.96 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=60.4
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCC--CCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhc
Q psy15852 112 ITEELKEHFSKYGEIENVTLKSDPNT--GRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKA 182 (661)
Q Consensus 112 te~~L~~~F~~~G~I~~v~l~~~~~t--g~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~ 182 (661)
.+++|++.|++||+|.+|+|++++.+ ++++|||||+|.++++|.+| +..+|+..+.||.|.|.++..
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~A----i~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA----MQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHH----HHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHH----HHHhCCCEeCCCEEEEEEeCH
Confidence 45799999999999999999998764 36899999999999999999 999999999999999887643
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-10 Score=96.08 Aligned_cols=66 Identities=9% Similarity=0.224 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy15852 194 PEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265 (661)
Q Consensus 194 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~~a~~k~~ 265 (661)
..+++++|+++|++||+|.+|.|+ ++++|||||+|.+.++|.+|++.+ ..+.+++|.|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCC
Confidence 568999999999999999999997 357999999999999999999984 446799999999987653
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.12 E-value=7.4e-11 Score=100.99 Aligned_cols=66 Identities=30% Similarity=0.481 Sum_probs=58.1
Q ss_pred cCCHHHHHHHh------------hcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehh
Q psy15852 110 HKITEELKEHF------------SKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEA 177 (661)
Q Consensus 110 ~~te~~L~~~F------------~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v 177 (661)
.+++++|+++| ++||+|.+|+|++++. ++++|||||+|.++++|.+| +..+|+..+.|++|.|
T Consensus 26 ~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A----~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKA----VIDLNNRWFNGQPIHA 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHH----HHHHTTCEETTEECCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHH----HHHHCCCEECCEEEEE
Confidence 55666666555 9999999999999865 89999999999999999999 9999999999999988
Q ss_pred hhh
Q psy15852 178 KKA 180 (661)
Q Consensus 178 ~~~ 180 (661)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 754
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=6.8e-11 Score=103.40 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=65.9
Q ss_pred CcEEEEcCCC---c---CCHHHHHHHhhcCCCeeEEEEeeCCC----CCCcccEEEEEEeehhhHHHhhHHHHHHhCCee
Q psy15852 100 NKMVSHPGIV---H---KITEELKEHFSKYGEIENVTLKSDPN----TGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169 (661)
Q Consensus 100 ~~~~~~~~~~---~---~te~~L~~~F~~~G~I~~v~l~~~~~----tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~ 169 (661)
.++|+..|.. + -.+++|++.|++||+|.+|+|++++. +++++||+||+|.++++|.+| +..+|+..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~A----i~~LnGr~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA----IQALNGRW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHH----HHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHH----HHHHCCCE
Confidence 4455555553 2 24789999999999999999999864 467899999999999999999 99999999
Q ss_pred ecceeehhhhhh
Q psy15852 170 INNKKIEAKKAK 181 (661)
Q Consensus 170 i~g~~i~v~~~~ 181 (661)
+.||.|.+.++.
T Consensus 96 f~GR~i~v~~~~ 107 (118)
T 3ue2_A 96 FAGRKVVAEVYD 107 (118)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCcEEEEEEcC
Confidence 999999987764
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-10 Score=96.40 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCccc
Q psy15852 603 VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659 (661)
Q Consensus 603 ~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~~ 659 (661)
.++|+++|+++|++||.|.+|+|+ ++++|||||+|.+.++|.+|++..+.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~ 78 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLV 78 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCC
Confidence 468999999999999999999998 5789999999999999999999877654
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.3e-10 Score=101.02 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhcc
Q psy15852 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAK 183 (661)
Q Consensus 113 e~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~ 183 (661)
+++|+++|++||+|.+|.| .++ .++|||||+|.+.++|++| +..+|+..+.|++|.|.++.++
T Consensus 40 e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~A----i~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYC----IQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHH----HHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHH----HHHcCCCEECCcEEEEEEeCCC
Confidence 6899999999999999966 443 3899999999999999999 9999999999999999998764
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=5.1e-11 Score=101.97 Aligned_cols=71 Identities=14% Similarity=0.311 Sum_probs=61.2
Q ss_pred ecCCCccCCHHHHHHHH------------hcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEE
Q psy15852 189 VGGLSPEMKDEEIKAHF------------AQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEV 255 (661)
Q Consensus 189 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i 255 (661)
+.+||..+++++|++.| ++||+|.+|.|+++.. ++++|||||+|.+.++|.+|++.+ +..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777766655 9999999999998765 789999999999999999999986 689999999
Q ss_pred EEEec
Q psy15852 256 DVKKA 260 (661)
Q Consensus 256 ~V~~a 260 (661)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.06 E-value=1.9e-10 Score=100.49 Aligned_cols=81 Identities=11% Similarity=0.164 Sum_probs=69.8
Q ss_pred ccCCeeEecCCCc--cC---CHHHHHHHHhcCCCeEEEEeccCCC----CCCcCcEEEEEeCCHHHHHHHHHhC-CCccC
Q psy15852 182 AKSGKIFVGGLSP--EM---KDEEIKAHFAQFGNIIETEMPYDKS----KSQRKNFCFITFEHESVVIDLLKNP-KQKIN 251 (661)
Q Consensus 182 ~~~~~lfV~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~ 251 (661)
+++++|+|+|+-. ++ .++||++.|++||+|.+|.|++++. +++++|++||+|.+.++|.+|++.+ +..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4678999999932 22 3689999999999999999998764 4577899999999999999999997 68999
Q ss_pred CeEEEEEeccC
Q psy15852 252 DKEVDVKKATP 262 (661)
Q Consensus 252 g~~i~V~~a~~ 262 (661)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.05 E-value=1.7e-10 Score=113.09 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=64.4
Q ss_pred CCcEEEEcCCC-cC---------CHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCe
Q psy15852 99 KNKMVSHPGIV-HK---------ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNH 168 (661)
Q Consensus 99 ~~~~~~~~~~~-~~---------te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~ 168 (661)
..+.|||++++ .+ +|++|+++|++||+|.+|+|+. +||||||+|.+.++|+.| +..+++.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A----~~am~g~ 202 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFA----KEAMSNQ 202 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHH----HHHHTTC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHH----HHHhCCC
Confidence 34555556655 76 7999999999999999999985 479999999999999999 9999999
Q ss_pred ee------------cceeehhhhhhccC
Q psy15852 169 VI------------NNKKIEAKKAKAKS 184 (661)
Q Consensus 169 ~i------------~g~~i~v~~~~~~~ 184 (661)
.| .|+.|.|.|+....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEeccccccccccCCCCEEEEEEccCCC
Confidence 99 89999999997654
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=2.7e-10 Score=117.88 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=55.3
Q ss_pred ccCCCeEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCc
Q psy15852 590 VEAKNKMVSHP--GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657 (661)
Q Consensus 590 ~~~~~~l~v~n--lp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~ 657 (661)
..+.++|||+| |++.+||++|+++|++||+|.+|.|++ +||||||+|.+.++|++||+.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC
Confidence 34568999999 578999999999999999999988864 479999999999999999998875
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.87 E-value=2.7e-09 Score=110.41 Aligned_cols=80 Identities=9% Similarity=0.134 Sum_probs=65.8
Q ss_pred hhhhhhccCCeeEecC--CCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCcc--
Q psy15852 176 EAKKAKAKSGKIFVGG--LSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKI-- 250 (661)
Q Consensus 176 ~v~~~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~-- 250 (661)
.|.....+.++|||+| |+..+++++|+++|++||+|.+|.++. +||||||+|.+.++|++|++.+ +..+
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3455566778999999 578999999999999999999998854 4899999999999999999998 4544
Q ss_pred -CCe--EEEEEecc
Q psy15852 251 -NDK--EVDVKKAT 261 (661)
Q Consensus 251 -~g~--~i~V~~a~ 261 (661)
.|+ .|.|.++.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 345 56777764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=1.3e-09 Score=94.64 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=55.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 112 te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
.+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+| +..+||..+.|+.|.|.++.
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~A----i~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAA----VNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHH----HHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHH----HHHhCCCEECCEEEEEEEEc
Confidence 356899999999999999997752 599999999999999999 99999999999999987764
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.76 E-value=9.8e-09 Score=88.99 Aligned_cols=76 Identities=5% Similarity=0.073 Sum_probs=63.4
Q ss_pred CCeeEecCCCcc----------CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCC
Q psy15852 184 SGKIFVGGLSPE----------MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKIND 252 (661)
Q Consensus 184 ~~~lfV~nLp~~----------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g 252 (661)
++.|.++|+-.. -.++||++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.+ +..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467888887322 2246899999999999999997753 4899999999999999999987 689999
Q ss_pred eEEEEEeccCC
Q psy15852 253 KEVDVKKATPK 263 (661)
Q Consensus 253 ~~i~V~~a~~k 263 (661)
|.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998653
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=2.1e-08 Score=87.07 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred cCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHhC
Q psy15852 591 EAKNKMVSHPGIVD-KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD-TESLEKASVED 655 (661)
Q Consensus 591 ~~~~~l~v~nlp~~-~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~-~e~A~~A~~~~ 655 (661)
..+.-|+|.||+++ +++++|+++|++||.|.+|.+.++.. .|||.|.+ .++|..|+.++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHh
Confidence 35788999999999 99999999999999999999999876 69999999 79999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.9e-08 Score=84.71 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=65.2
Q ss_pred ccCCeeEecCCCcc-CCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCC-HHHHHHHHHhC---CCccCCeEEE
Q psy15852 182 AKSGKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKNP---KQKINDKEVD 256 (661)
Q Consensus 182 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Al~~~---~~~~~g~~i~ 256 (661)
++.+-|+|+||+.. +++++|+++|++||+|.+|.+.++.. .|||+|.+ .++|.+|++.+ +..|+|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45678999999999 99999999999999999999988754 49999999 88999999986 4689998888
Q ss_pred EEecc
Q psy15852 257 VKKAT 261 (661)
Q Consensus 257 V~~a~ 261 (661)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.6e-07 Score=76.20 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=62.3
Q ss_pred ccCCeeEecCCCc----cCCH----HHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCe
Q psy15852 182 AKSGKIFVGGLSP----EMKD----EEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDK 253 (661)
Q Consensus 182 ~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~ 253 (661)
|+..+|+|.-++. ++-+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++.++..+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 4456888877662 2323 5799999999999999998763 8999999999999999668999999
Q ss_pred EEEEEeccCCC
Q psy15852 254 EVDVKKATPKP 264 (661)
Q Consensus 254 ~i~V~~a~~k~ 264 (661)
.|+|+.+.+.-
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999998754
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.1e-07 Score=75.51 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhc
Q psy15852 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKA 182 (661)
Q Consensus 114 ~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~ 182 (661)
.+|.+.|++||+|..++++.++ +||+|.+.++|.+| +. +|+..+.|+.|+|..+.+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaA----i~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNV----LS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHG----GG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHH----Hh-cCCeEeCCeEEEEEeCCC
Confidence 6799999999999999999873 89999999999998 65 999999999999988765
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=2.5e-07 Score=90.58 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=60.5
Q ss_pred cCCHHHHHHHhhcCCCeeEEEEeeCCC----CCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 110 HKITEELKEHFSKYGEIENVTLKSDPN----TGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 110 ~~te~~L~~~F~~~G~I~~v~l~~~~~----tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
+-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+| +..+||..+.||.|.+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a----~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA----IQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHH----HHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHH----HHHhcCceECCeEEEEEEcC
Confidence 456789999999999999999996544 458999999999999999999 99999999999999887654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=4.9e-07 Score=73.71 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=61.0
Q ss_pred ccCCeeEecCCCcc-----CCH----HHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCC
Q psy15852 182 AKSGKIFVGGLSPE-----MKD----EEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIND 252 (661)
Q Consensus 182 ~~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g 252 (661)
|+..+|+|.-++.. +-+ .+|.+.|++||+|..+++..++ +||+|.+.++|.+||+..+..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 55679999887632 222 4689999999999999998764 999999999999999966899999
Q ss_pred eEEEEEeccC
Q psy15852 253 KEVDVKKATP 262 (661)
Q Consensus 253 ~~i~V~~a~~ 262 (661)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999987653
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.21 E-value=1.7e-06 Score=84.51 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHhcCCCeEEEEeccCC----CCCCcCcEEEEEeCCHHHHHHHHHhC-CCccCCeEEEEEeccC
Q psy15852 195 EMKDEEIKAHFAQFGNIIETEMPYDK----SKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATP 262 (661)
Q Consensus 195 ~~te~~L~~~F~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~Al~~~-~~~~~g~~i~V~~a~~ 262 (661)
.-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|++.+ +..+.||.|.+.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34568999999999999999998543 44589999999999999999999997 6899999999999764
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=7.4e-07 Score=72.69 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhh
Q psy15852 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAK 181 (661)
Q Consensus 114 ~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~ 181 (661)
.+|.+.|++||.|..|+++.++ +||+|.+.++|.+| +. +++..+.|+.|+|....
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~A----I~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSV----LD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHH----HH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHH----Hh-cCCeeeCCeEEEEeccC
Confidence 5699999999999999999873 99999999999998 65 99999999999987653
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00014 Score=60.47 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=59.7
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcC-----CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKY-----GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~-----G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~ 174 (661)
+++-+-+++..+++..|+.+.+++ |.|..|.+..|.. =|+|+|.+...|-+| .+.++|..|.|++
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKa----sLaL~G~ef~gr~ 91 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKM----LMILNGSQFQGKV 91 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHH----HHHHSSEEETTEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHH----HhhcCCeeecCeE
Confidence 444444555589999999999999 9999999998854 599999999999999 9999999999999
Q ss_pred ehhh
Q psy15852 175 IEAK 178 (661)
Q Consensus 175 i~v~ 178 (661)
|.+.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00028 Score=58.24 Aligned_cols=86 Identities=15% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcC-----CCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKY-----GEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~-----G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
..++.+.++++++.++.|.-+|+.- |+|.+|.... +-|+|+|.+.+.|++ +++...+.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~r-----VL~k~~H~L~~~ 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAER-----VLAQADHELHGA 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHH-----HHTCSCCBSSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHH-----HhcCCcceecCe
Confidence 4566677777799999999999872 5799998865 269999999999999 788889999999
Q ss_pred eehhhhhhcc-CCeeEecCCCccCC
Q psy15852 174 KIEAKKAKAK-SGKIFVGGLSPEMK 197 (661)
Q Consensus 174 ~i~v~~~~~~-~~~lfV~nLp~~~t 197 (661)
++.|.+..+. ..+|++.+|++.++
T Consensus 75 ~LsV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCCCCCcceEeeecCCCCCC
Confidence 9999876554 47999999998875
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00076 Score=55.66 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=64.4
Q ss_pred CCeeEecCCCccCCHHHHHHHHhc-----CCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQ-----FGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVK 258 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g~~i~V~ 258 (661)
.++|.|.|||+.+.++.|+-+|++ =|+|.+++... +-|+|+|.+.+.|++.|+...+.|++.+|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 368999999999999999999987 25899988753 45999999999999999998999999999999
Q ss_pred eccCCCC
Q psy15852 259 KATPKPE 265 (661)
Q Consensus 259 ~a~~k~~ 265 (661)
...++..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 8777653
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00031 Score=58.41 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=62.5
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcC-----CCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQF-----GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN-PKQKINDKEVDV 257 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~-~~~~~~g~~i~V 257 (661)
.++|-+-|||..+++..|+.+..++ |.|..+.+..|. +-|+|+|.+...|-||.-. .+..|.|++|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 5789999999999999999999999 999999998763 4599999999999998755 478999999999
Q ss_pred Eec
Q psy15852 258 KKA 260 (661)
Q Consensus 258 ~~a 260 (661)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 653
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.40 E-value=0.0043 Score=50.49 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=44.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 595 KMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 595 ~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
.||+-..|.+|--.||.++|++||.| .|+=+-|- -|||.|.+++.|..|++.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 35555999999999999999999976 66777654 599999999999999984
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.27 E-value=0.021 Score=48.64 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=60.1
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhCCCccCC-eEEEEEecc
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIND-KEVDVKKAT 261 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~~~~~~g-~~i~V~~a~ 261 (661)
..+.|.|-+.|+.. ...|...|++||.|.+.... ....+-.|+|.++.+|++||.+++..+.+ -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 34678898999986 45677899999999988872 23678999999999999999999988874 778888865
Q ss_pred C
Q psy15852 262 P 262 (661)
Q Consensus 262 ~ 262 (661)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.21 E-value=0.0054 Score=50.12 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=43.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 596 MVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 596 l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
||+-..|.+|--.||.++|++||.| .|+=+-|- -|||.|.+++.|..|++.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 4555999999999999999999955 66666654 599999999999999984
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.011 Score=48.91 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhCCcc
Q psy15852 592 AKNKMVSHPGIVDK-I----TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658 (661)
Q Consensus 592 ~~~~l~v~nlp~~~-t----e~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~~~~ 658 (661)
..++|+|.||+.++ + .+.++++|..|+++.+....+.-. =..|.|.++++|.+|-.++|.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccc
Confidence 46899999998844 2 357899999999999999987654 4689999999999999998864
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.86 E-value=0.015 Score=47.37 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=44.2
Q ss_pred CCCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 98 AKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 98 ~~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
....+|++.-|+++...||.++|+.||-| .|+++-|- .|||.|.+++.|..|
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~a 65 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIA 65 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHH
Confidence 34568888777799999999999999965 67788763 699999999999997
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.78 E-value=0.029 Score=45.60 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=48.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHh
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGR--SRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~--s~G~aFV~F~~~e~A~~A~~~ 654 (661)
+||.||+||+..||+++.+..+++..+....-+..+.+.. .-.-|+|.|.+.+++..-.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999999999887777665433211 224699999999888877664
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.73 E-value=0.043 Score=44.62 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=54.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCC--cccEEEEEEeehhhHHHhhHHHHHHhCCeeecce
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGR--SRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~--srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~ 173 (661)
.|+++..|||.+||+++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++..- ....+|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f----~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF----RDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHH----HHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHH----HHHhCCcEEEcC
Confidence 4788999999999999999999998877666665443222 223599999999999986 778898887543
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.56 E-value=0.027 Score=46.61 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=56.7
Q ss_pred CcEEEEcCCCcC-----CHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeeccee
Q psy15852 100 NKMVSHPGIVHK-----ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174 (661)
Q Consensus 100 ~~~~~~~~~~~~-----te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~ 174 (661)
+++++.++.+++ -.+.++++|..|+++.+....+.-. =..|.|.++++|.+| -..+++..+.|+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~A----R~~Lh~~~f~g~~ 75 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADA----RLRLHKTEFLGKE 75 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHH----HHTSTTSEETTEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHH----HHHhccceecCce
Confidence 456666665433 2367899999999988887776432 478999999999999 8999999999998
Q ss_pred ehhhhhh
Q psy15852 175 IEAKKAK 181 (661)
Q Consensus 175 i~v~~~~ 181 (661)
+++-.+.
T Consensus 76 ~r~YFgq 82 (104)
T 1wey_A 76 MKLYFAQ 82 (104)
T ss_dssp CEEECCC
T ss_pred eEEEecC
Confidence 8775554
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.046 Score=44.67 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=42.5
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
..+|+++-|+++...||.++|+.||-| .|+++-|- .|||.|.+++.|..|
T Consensus 6 ~HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~a 55 (101)
T 3ctr_A 6 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIA 55 (101)
T ss_dssp EEEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHH
Confidence 346778777799999999999999944 78888763 699999999999997
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.13 E-value=0.068 Score=45.55 Aligned_cols=62 Identities=15% Similarity=0.304 Sum_probs=47.9
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
.+-|.|-..|.-....|...|++||.|.+...... ...-.|.|.++.+|++| +..|+..|.+
T Consensus 24 ~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rA-----L~kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQASASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKA-----LSKDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHH-----HTTTTCEETT
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHH-----HHhCCeEecC
Confidence 33444445554468889999999999998887332 23899999999999995 7789999875
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.25 E-value=0.061 Score=46.46 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=56.4
Q ss_pred CeeEecCCCccCCHHHHHHHHhcCCCeEE-EEeccCC--------CCC-----CcCcEEEEEeCCHHHHHHHHHhCCCcc
Q psy15852 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIE-TEMPYDK--------SKS-----QRKNFCFITFEHESVVIDLLKNPKQKI 250 (661)
Q Consensus 185 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~--------~~g-----~~~g~afV~f~~~~~A~~Al~~~~~~~ 250 (661)
..|.|-+.|+.... .+-+.|++||.|.+ ....+.. ... .......|+|+++.+|.+||..++..+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 45777788877665 56678999999866 2222100 000 125677999999999999999999999
Q ss_pred CCeEEEEEeccC
Q psy15852 251 NDKEVDVKKATP 262 (661)
Q Consensus 251 ~g~~i~V~~a~~ 262 (661)
.|.-|-|.+..+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999999988754
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.97 E-value=0.068 Score=43.73 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=48.2
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCC--cccEEEEEEeehhhHHHhhHHHHHHhCCeeecc
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGR--SRGFAFIVFKDTESLEKASVEDVIAEGNHVINN 172 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~--srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g 172 (661)
..++++..|||.+||+++.+.++.+=++.....+..+.+.. .-.-|||.|.+.++...- ....++..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F----~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLF----RDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHH----HHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHH----HHHcCCcEEEe
Confidence 46899999999999999888877654442222222111111 112489999999999986 77888887754
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.43 E-value=0.047 Score=58.22 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=42.8
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHh
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 245 (661)
.+.|+|. .|..+++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3789997 79999999999999999999999886542 46999999999999988765
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.84 E-value=0.29 Score=40.01 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=44.2
Q ss_pred CCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCc--CcEEEEEeCCHHHHHHHHHhC
Q psy15852 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR--KNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 184 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~Al~~~ 246 (661)
+-+|-|+.||+.+||+++.+.++..=++....+...+.+.+. -.-|||.|.+.++...-.+..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 357999999999999999988887655544333332222111 123899999999988877764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.25 E-value=0.091 Score=56.01 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHh
Q psy15852 592 AKNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654 (661)
Q Consensus 592 ~~~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~ 654 (661)
..+.|||. .|.+.++++|.+.|++||.|.++.+-.+. | =||.|+|.+.++|.+++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 35679997 89999999999999999999998877543 3 4999999999999988764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.62 E-value=0.17 Score=43.70 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=50.6
Q ss_pred CcEEEEcCCCcCCHHHHHHHhhcCCCeeE-EEEeeCC--------CCC-----CcccEEEEEEeehhhHHHhhHHHHHHh
Q psy15852 100 NKMVSHPGIVHKITEELKEHFSKYGEIEN-VTLKSDP--------NTG-----RSRGFAFIVFKDTESLEKASVEDVIAE 165 (661)
Q Consensus 100 ~~~~~~~~~~~~te~~L~~~F~~~G~I~~-v~l~~~~--------~tg-----~srG~afV~F~~~e~A~~A~~~~~~~~ 165 (661)
..-|+|=..|......+.+.|++||.|.+ +.+.+.. ... .....-.|+|.++.+|.+| +..
T Consensus 7 e~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA-----L~~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA-----LLE 81 (132)
T ss_dssp -CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH-----HTT
T ss_pred ceEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH-----HHh
Confidence 34455555577778889999999999866 3222100 000 1245779999999999995 788
Q ss_pred CCeeecceeehhhh
Q psy15852 166 GNHVINNKKIEAKK 179 (661)
Q Consensus 166 ~~~~i~g~~i~v~~ 179 (661)
||..|.|.-|-|.+
T Consensus 82 NG~ii~G~mIGV~P 95 (132)
T 3p3d_A 82 NGAVFNGVLLGVIP 95 (132)
T ss_dssp TTCEETTEECEEEE
T ss_pred CCeEeCcEEEEEEE
Confidence 99999986444433
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.14 E-value=3.7 Score=44.43 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
..++| ..|..|...+|.++|+.||.| +|+-+-|. .|||.|.+.+.|..++...
T Consensus 441 ~vl~v-~f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 441 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GEEEE-ECCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cEEEE-eCCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 34455 489999999999999999965 77766443 6999999999999888753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.43 E-value=11 Score=40.61 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCcCCHHHHHHHhhcCCCeeEEEEeeCCCCCCcccEEEEEEeehhhHHHh
Q psy15852 99 KNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157 (661)
Q Consensus 99 ~~~~~~~~~~~~~te~~L~~~F~~~G~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A 157 (661)
...+++++.++.+...+|.++|+.||.| +|+++.+. .|||.|.+.+.|..+
T Consensus 439 R~~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~ 489 (507)
T 3d45_A 439 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIA 489 (507)
T ss_dssp GGGEEEEECCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHH
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHH
Confidence 3458888877799999999999999964 67766542 699999999999997
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.33 E-value=21 Score=32.20 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=38.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hcCCCeeEEEEeecCCCCCcccEEEEEEcCHHHH
Q psy15852 595 KMVSHPGIV-D--------KITEELKEHF--SKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648 (661)
Q Consensus 595 ~l~v~nlp~-~--------~te~dL~~~F--~~~G~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A 648 (661)
..+|.|+|. . ...++|++.| +.|.++ .|+.+.++. -++|+|.|.|.+--..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~--Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL--GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS--BEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC--CCceeEEEEecCChHH
Confidence 578888887 3 2237999988 999987 577777764 4789999999875443
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.89 E-value=1.5e+02 Score=23.20 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=45.5
Q ss_pred cCCeeEecCCCccCCHHHHHHHHhcCCCeEEEEeccCCCCCCcCcEEEEEeCCHHHHHHHHHhC
Q psy15852 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246 (661)
Q Consensus 183 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~~ 246 (661)
..|-|-|-|+|..+-..++.-.....|---.|..+ .|-|.+.|.+.++..-|+..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 34667788999999988887777778877777775 355999999999999999874
No 405
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=29.55 E-value=11 Score=38.64 Aligned_cols=7 Identities=14% Similarity=-0.135 Sum_probs=2.6
Q ss_pred Cccchhh
Q psy15852 401 RELEIPE 407 (661)
Q Consensus 401 ~~~~l~~ 407 (661)
++++|.+
T Consensus 230 t~~~l~~ 236 (358)
T 2pk2_A 230 TLELLDE 236 (358)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 3333333
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.51 E-value=2.7e+02 Score=21.88 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHHhhcCC-CeeEEEEeeCCCCCCcccEEEEEEeehhhHHHhhHHHHHHhCCeeecceeehhhhhhccCCeeEecCCC
Q psy15852 115 ELKEHFSKYG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAKSGKIFVGGLS 193 (661)
Q Consensus 115 ~L~~~F~~~G-~I~~v~l~~~~~tg~srG~afV~F~~~e~A~~A~~~~~~~~~~~~i~g~~i~v~~~~~~~~~lfV~nLp 193 (661)
.|.+.....| .|.+|.++.. ..||.||++...++...+ +....+. +=||++
T Consensus 28 ~L~~~~~~~~l~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~----I~~t~gV-----------------~gfvg~-- 79 (92)
T 3lpe_A 28 LMASRAEKEQLDVYSILASES-----LKGYVLVEAETKGDVEEL----IKGMPRV-----------------RGIVPG-- 79 (92)
T ss_dssp HHHHHHHHTTCCEEEEEECTT-----STTEEEEEESSHHHHHHH----HTTCTTE-----------------EEECSS--
T ss_pred HHHHHHHhcCCcEEEEEEecc-----cCCEEEEEEecchhHHHH----HHCCCCc-----------------eEeCCC--
Confidence 3444333334 3777777652 789999999988887775 4333222 223443
Q ss_pred ccCCHHHHHHHHh
Q psy15852 194 PEMKDEEIKAHFA 206 (661)
Q Consensus 194 ~~~te~~L~~~F~ 206 (661)
.++++++..++.
T Consensus 80 -pl~~~Ev~~il~ 91 (92)
T 3lpe_A 80 -TIAIEEIEPLLT 91 (92)
T ss_dssp -CCCHHHHHHHHC
T ss_pred -CCCHHHHHHHhC
Confidence 677778777764
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.62 E-value=2.4e+02 Score=22.08 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHhC
Q psy15852 594 NKMVSHPGIVDKITEELKEHFSK-YG-EIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655 (661)
Q Consensus 594 ~~l~v~nlp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~tg~s~G~aFV~F~~~e~A~~A~~~~ 655 (661)
++-|+..+..++++-+|++.+.. |+ .|.+|..+.-+. |.- -|+|++..-++|.....+.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~K--KA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEK--KAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCE--EEEEEECTTSCHHHHHHHS
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cce--EEEEEcCCCCcHHHHHHhh
Confidence 45678888899999999988875 66 578888877553 433 4999999888887665543
Done!