Your job contains 1 sequence.
>psy15852
MTAESQDVEMTTTENGQENGGAPVSVKDDDRKLFCPLSSYLELDYLQLWQYFDWVSSSFS
ENCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIVHKITEELKEHF
SKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKA
KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVI
DLLKNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGY
GGILYKPLLFYELNELGISGRSLVCRTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDEN
PTSRSHPSQNAIKLYLTRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTT
TEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP
KQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGELDYL
QLWQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHP
GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFYS
N
The BLAST search returned 21 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15852
(661 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 484 3.8e-46 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 286 2.0e-24 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 286 2.0e-24 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 286 2.0e-24 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 286 2.0e-24 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 286 2.0e-24 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 284 3.2e-24 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 284 3.2e-24 1
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 284 3.2e-24 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 283 4.2e-24 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 283 4.2e-24 1
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 283 4.2e-24 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 283 4.2e-24 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 283 4.2e-24 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 283 4.2e-24 1
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 283 4.2e-24 1
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 283 4.2e-24 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 282 5.3e-24 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 282 5.3e-24 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 281 6.9e-24 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 281 6.9e-24 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 281 6.9e-24 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 280 8.8e-24 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 280 8.8e-24 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 280 8.8e-24 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 280 8.8e-24 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 279 1.1e-23 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 279 1.1e-23 1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 279 1.1e-23 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 278 1.5e-23 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 277 1.9e-23 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 276 2.4e-23 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 276 2.4e-23 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 273 5.1e-23 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 272 6.6e-23 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 271 8.4e-23 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 269 1.4e-22 1
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 279 4.6e-22 1
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 279 4.6e-22 1
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 279 4.6e-22 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 262 8.0e-22 1
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 259 1.7e-21 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 257 4.8e-20 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 240 2.0e-19 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 259 3.5e-19 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 240 3.9e-19 1
UNIPROTKB|J9NZR9 - symbol:J9NZR9 "Uncharacterized protein... 237 4.2e-19 1
UNIPROTKB|F1SHL4 - symbol:F1SHL4 "Uncharacterized protein... 232 1.5e-18 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 240 3.9e-18 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 245 4.2e-18 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 237 1.1e-17 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 236 1.2e-17 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 239 1.6e-17 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 243 1.9e-17 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 237 2.0e-17 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 236 2.3e-17 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 241 2.3e-17 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 231 2.8e-17 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 235 3.0e-17 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 235 3.0e-17 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 235 3.0e-17 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 235 3.2e-17 1
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 219 3.7e-17 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 238 4.9e-17 1
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 232 6.2e-17 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 226 1.6e-16 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 238 1.7e-16 2
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 228 2.0e-16 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 212 2.1e-16 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 227 3.1e-16 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 229 3.4e-16 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 205 1.2e-15 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 1.5e-15 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 204 1.5e-15 1
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 187 1.7e-15 2
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 203 2.0e-15 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 202 2.5e-15 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 198 6.9e-15 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 206 7.5e-15 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 195 1.4e-14 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 145 1.6e-14 2
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 194 1.9e-14 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 149 2.1e-14 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 206 2.8e-14 1
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 210 3.5e-14 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 206 3.8e-14 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 150 3.9e-14 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 191 3.9e-14 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 4.2e-14 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 4.5e-14 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 4.6e-14 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 205 5.1e-14 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 205 5.1e-14 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 205 5.3e-14 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 6.7e-14 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 6.7e-14 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 204 6.7e-14 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 204 6.7e-14 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 204 6.7e-14 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 204 6.7e-14 1
WARNING: Descriptions of 441 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 95/160 (59%), Positives = 116/160 (72%)
Query: 107 GIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TE EL++HF KYGEIE++ +K+DP TGRSRGFAFIVF +TE+++K S D
Sbjct: 62 GLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD---- 117
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
H+IN+ IFVGGL+ E+ DEEIK +F QFGNI+E EMP+DK KSQR
Sbjct: 118 -EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQR 176
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K FCFITF+ E VV DLLK PKQKI KEVDVK+ATPKPE
Sbjct: 177 KGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 222 (83.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+E EMP+DK KSQRK FCFITF+ E VV DLLK PKQKI KEVDVK+ATPKPE
Sbjct: 162 IVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Score = 177 (67.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
G+ + TE EL++HF KYGEIE++ +K+DP TGRSRGFAFIVF +TE+++K S D +
Sbjct: 62 GLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHII 121
Query: 660 SN 661
++
Sbjct: 122 NS 123
Score = 120 (47.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS E ++E++ HF ++G I + D + + F FI F + + +
Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117
Query: 247 KQKINDKEVDVKKA 260
+ IN K+VD KKA
Sbjct: 118 EHIINSKKVDPKKA 131
Score = 81 (33.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 591 EAKNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
+A++ + G+ +I+ EE+K +F ++G I V + D + +GF FI F D+E +
Sbjct: 132 KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF-DSEQV 189
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK + VI+
Sbjct: 89 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPK 148
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F FITF
Sbjct: 149 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 208 KEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 85 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Score = 119 (46.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ S V +L
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 137 EHRLDGRVIDPKKAMAMKKDP 157
Score = 112 (44.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Score = 86 (35.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 184 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 68 (29.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ S V +L + +++ + +D KKA K +P
Sbjct: 100 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK + VI+
Sbjct: 102 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPK 161
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F FITF
Sbjct: 162 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 220
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 221 KEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 250
Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 98 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 144
Score = 119 (46.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ S V +L
Sbjct: 90 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 149
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 150 EHRLDGRVIDPKKAMAMKKDP 170
Score = 112 (44.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 178 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 228
Score = 86 (35.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 197 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 250
Score = 68 (29.0 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ S V +L + +++ + +D KKA K +P
Sbjct: 113 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 170
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK + VI+
Sbjct: 88 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPK 147
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F FITF
Sbjct: 148 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 206
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 207 KEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 236
Score = 156 (60.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 84 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 130
Score = 119 (46.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ S V +L
Sbjct: 76 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 135
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 136 EHRLDGRVIDPKKAMAMKKDP 156
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 164 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 214
Score = 86 (35.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 183 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 236
Score = 68 (29.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ S V +L + +++ + +D KKA K +P
Sbjct: 99 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 156
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK + VI+
Sbjct: 89 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPK 148
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F FITF
Sbjct: 149 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 208 KEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 85 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Score = 119 (46.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ S V +L
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 137 EHRLDGRVIDPKKAMAMKKDP 157
Score = 112 (44.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Score = 86 (35.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 184 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 68 (29.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ S V +L + +++ + +D KKA K +P
Sbjct: 100 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 59/150 (39%), Positives = 90/150 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK + VI+
Sbjct: 89 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPK 148
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F QFG I E+P D ++R+ F FITF
Sbjct: 149 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 208 KEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 156 (60.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD+ S+EK
Sbjct: 85 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Score = 119 (46.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 24/81 (29%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ S V +L
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 137 EHRLDGRVIDPKKAMAMKKDP 157
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ + ++K
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK 215
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 184 EIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPK 237
Score = 68 (29.0 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ S V +L + +++ + +D KKA K +P
Sbjct: 100 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 284 (105.0 bits), Expect = 3.2e-24, P = 3.2e-24
Identities = 59/150 (39%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 84 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPK 143
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 144 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITF 202
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ I+ + ++K A PK
Sbjct: 203 KEEEPVKKVLEKKFHTISGSKCEIKVAQPK 232
Score = 154 (59.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 80 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEK 126
Score = 118 (46.6 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + + RGF FI FK+ E ++K
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKK 210
Score = 115 (45.5 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQK 131
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 132 EHRLDGRVIDPKKAMAMKKDP 152
Score = 89 (36.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ I+ + ++K A PK
Sbjct: 179 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPK 232
Score = 64 (27.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 95 EVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 284 (105.0 bits), Expect = 3.2e-24, P = 3.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 73
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 74 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITF 133
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 134 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 165
Score = 149 (57.5 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 10 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 56
Score = 117 (46.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 60
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 110 (43.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 95 DTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 141
Score = 88 (36.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 110 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 165
Score = 67 (28.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 25 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 75
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 284 (105.0 bits), Expect = 3.2e-24, P = 3.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 13 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 72
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 73 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITF 132
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 133 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 164
Score = 149 (57.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 9 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 55
Score = 117 (46.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 59
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 60 KEHKLNGKVIDPKRA 74
Score = 110 (43.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 94 DTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 140
Score = 88 (36.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 109 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 164
Score = 67 (28.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 24 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 74
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 109 (43.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 88 (36.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 67 (28.6 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 109 (43.4 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 88 (36.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 109 (43.4 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 88 (36.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 59 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 118
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 119 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 178
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 179 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 210
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 55 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 101
Score = 117 (46.2 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 47 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 105
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 106 KEHKLNGKVIDPKRA 120
Score = 109 (43.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 140 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 186
Score = 88 (36.0 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 155 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 210
Score = 67 (28.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 70 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 120
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 44 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 103
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 104 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 163
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 164 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 195
Score = 149 (57.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 40 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 86
Score = 117 (46.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 32 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 90
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 91 KEHKLNGKVIDPKRA 105
Score = 109 (43.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 125 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 171
Score = 88 (36.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 140 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 195
Score = 67 (28.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 55 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 105
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 15 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 74
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 75 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 134
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 135 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 166
Score = 149 (57.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 11 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 57
Score = 117 (46.2 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 61
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 62 KEHKLNGKVIDPKRA 76
Score = 109 (43.4 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 96 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 142
Score = 88 (36.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 111 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 166
Score = 67 (28.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 26 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 76
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 109 (43.4 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 88 (36.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 172
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 283 (104.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 109 (43.4 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Score = 88 (36.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 207 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
E+++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 122 EVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 282 (104.3 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 57/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S+EK +++ +G +I+
Sbjct: 80 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGK-LIDP 138
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 139 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 198
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 199 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 229
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S+EK
Sbjct: 76 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 122
Score = 115 (45.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 161 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 207
Score = 98 (39.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 68 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 127
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 128 EHKLDGKLIDPKRA 141
Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 176 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 229
Score = 59 (25.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 76 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKL 135
Query: 489 VDVKKA 494
+D K+A
Sbjct: 136 IDPKRA 141
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 282 (104.3 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 57/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S+EK +++ +G +I+
Sbjct: 44 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGK-LIDP 102
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 103 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 162
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 163 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S+EK
Sbjct: 40 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 125 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Score = 98 (39.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 32 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 91
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 92 EHKLDGKLIDPKRA 105
Score = 98 (39.6 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 140 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
Score = 59 (25.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 40 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKL 99
Query: 489 VDVKKA 494
+D K+A
Sbjct: 100 IDPKRA 105
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 281 (104.0 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 58/150 (38%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 84 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 143
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 144 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 154 (59.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 80 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Score = 116 (45.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ E ++K
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Score = 115 (45.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 132 EHRLDGRVIDPKKAMAMKKDP 152
Score = 86 (35.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 64 (27.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 95 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 281 (104.0 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 58/150 (38%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 84 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 143
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 144 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 154 (59.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 80 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Score = 116 (45.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ E ++K
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Score = 115 (45.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 132 EHRLDGRVIDPKKAMAMKKDP 152
Score = 86 (35.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 64 (27.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 95 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 281 (104.0 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 58/150 (38%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 84 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 143
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 144 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 154 (59.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 80 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Score = 116 (45.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + RGF FI FK+ E ++K
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Score = 115 (45.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 132 EHRLDGRVIDPKKAMAMKKDP 152
Score = 86 (35.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 64 (27.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 95 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 280 (103.6 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 109 KDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 168
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 169 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 229 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 146 (56.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 105 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Score = 118 (46.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 23/75 (30%), Positives = 48/75 (64%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG++++ + D + + F F+ F+ ES +D + +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 155
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 109 (43.4 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Score = 88 (36.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 205 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
++++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 120 DVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 170
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 280 (103.6 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 109 KDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 168
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 169 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 229 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 146 (56.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 105 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Score = 118 (46.6 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 23/75 (30%), Positives = 48/75 (64%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG++++ + D + + F F+ F+ ES +D + +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 155
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 109 (43.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Score = 88 (36.0 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 205 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 64 (27.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
++++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 120 DVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 170
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 280 (103.6 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 90 KDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 149
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 150 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 209
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 210 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 241
Score = 146 (56.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 86 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 132
Score = 118 (46.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 23/75 (30%), Positives = 48/75 (64%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG++++ + D + + F F+ F+ ES +D + +
Sbjct: 78 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 136
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 137 KEHKLNGKVIDPKRA 151
Score = 109 (43.4 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 217
Score = 88 (36.0 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 186 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 241
Score = 64 (27.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
++++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 101 DVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 151
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 280 (103.6 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 54/152 (35%), Positives = 89/152 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 109 KDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 168
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF
Sbjct: 169 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ + + ++K A K +
Sbjct: 229 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 146 (56.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 25/47 (53%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+G++ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 105 DTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 151
Score = 118 (46.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 23/75 (30%), Positives = 48/75 (64%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG++++ + D + + F F+ F+ ES +D + +
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 155
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 109 (43.4 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Score = 88 (36.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A K +
Sbjct: 205 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 260
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQ-KINDKEVDVKKA 494
++++ + D + + F F+ F+ ES +D + + K+ K+N K +D K+A
Sbjct: 120 DVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQKEHKLNGKVIDPKRA 170
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 43 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 101
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 102 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 161
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 162 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 39 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 124 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Score = 98 (39.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 31 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 90
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 91 EHKLDGKLIDPKRA 104
Score = 98 (39.6 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 139 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Score = 59 (25.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 39 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 98
Query: 489 VDVKKA 494
+D K+A
Sbjct: 99 IDPKRA 104
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 65 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 123
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 124 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 183
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 184 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 134 (52.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 61 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Score = 115 (45.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 146 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Score = 98 (39.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 53 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 112
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 113 EHKLDGKLIDPKRA 126
Score = 98 (39.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 59 (25.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 61 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 120
Query: 489 VDVKKA 494
+D K+A
Sbjct: 121 IDPKRA 126
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 65 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 123
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 124 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 183
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 184 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 134 (52.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 61 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Score = 115 (45.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 146 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Score = 98 (39.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 53 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 112
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 113 EHKLDGKLIDPKRA 126
Score = 98 (39.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 214
Score = 59 (25.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 61 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 120
Query: 489 VDVKKA 494
+D K+A
Sbjct: 121 IDPKRA 126
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 278 (102.9 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + TLK DP TGRSRGF F++FK+ ES+EK + VI+
Sbjct: 68 KDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPK 127
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGLSP+ +E+I+ +F +G + E+P + ++R+ FCFITF
Sbjct: 128 KAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITF 187
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ E V +++ I + +VK A K +
Sbjct: 188 KEEEPVKKIMEKKYHNIGLSKCEVKVAMSKEQ 219
Score = 148 (57.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + TLK DP TGRSRGF F++FK+ ES+EK
Sbjct: 64 DTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEK 110
Score = 118 (46.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + F F+ F+ V ++
Sbjct: 56 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQK 115
Query: 247 KQKINDKEVDVKKA 260
+ K+N K +D KKA
Sbjct: 116 EHKLNGKVIDPKKA 129
Score = 110 (43.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F YGE+E++ L + T + RGF FI FK+ E ++K
Sbjct: 149 DTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKK 195
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ E+P + ++R+ FCFITF+ E V +++ I + +VK A K +
Sbjct: 164 EVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSKEQ 219
Score = 68 (29.0 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+++ + D + + F F+ F+ V ++ + K+N K +D KKA
Sbjct: 79 EVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKA 129
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 277 (102.6 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 56/150 (37%), Positives = 88/150 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD ES++K +I+
Sbjct: 78 KDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPK 137
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +++I+ +F FG I E+P D ++R+ F FITF
Sbjct: 138 KAMAMKKDPIKK-IFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITF 196
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 197 KEEDPVKKILEKKFHNVSGSKCEIKIAQPK 226
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD ES++K
Sbjct: 74 DTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDK 120
Score = 115 (45.5 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +FA+FG + + + D + + + F FI F+ V +L++
Sbjct: 66 MFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHK 125
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 126 EHRLDGRLIDPKKAMAMKKDP 146
Score = 111 (44.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
++++E+F +GEIE + L DP T + RGF FI FK+ + ++K
Sbjct: 162 DQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 204
Score = 88 (36.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 173 EIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPK 226
Score = 60 (26.2 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+ + + D + + + F FI F+ V +L++ + +++ + +D KKA K +P
Sbjct: 89 EVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDP 146
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 276 (102.2 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 56/150 (37%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FK+ S+EK + +I+
Sbjct: 14 KDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPK 73
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 74 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITF 132
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 133 KEEDPVKKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 149 (57.5 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FK+ S+EK
Sbjct: 10 DTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEK 56
Score = 119 (46.9 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP T + RGF FI FK+ + ++K
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 140
Score = 112 (44.5 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG + + + D + + + F FI F+ V +L+
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 62 EHRLDGRLIDPKKAMAMKKDP 82
Score = 88 (36.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 109 EIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 61 (26.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+ + + D + + + F FI F+ V +L+ + +++ + +D KKA K +P
Sbjct: 25 EVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDP 82
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 276 (102.2 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 56/150 (37%), Positives = 89/150 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FK+ S+EK + +I+
Sbjct: 14 KDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPK 73
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 74 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITF 132
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ ++ + ++K A PK
Sbjct: 133 KEEDPVKKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 149 (57.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FK+ S+EK
Sbjct: 10 DTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEK 56
Score = 119 (46.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP T + RGF FI FK+ + ++K
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKK 140
Score = 112 (44.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG + + + D + + + F FI F+ V +L+
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 62 EHRLDGRLIDPKKAMAMKKDP 82
Score = 88 (36.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 109 EIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPK 162
Score = 61 (26.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+ + + D + + + F FI F+ V +L+ + +++ + +D KKA K +P
Sbjct: 25 EVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDP 82
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 273 (101.2 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 59/151 (39%), Positives = 88/151 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 83 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 142
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEE-IKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
IFVGGL+PE EE I+ +F +FG I E+P D ++R+ F FIT
Sbjct: 143 KAMAMKKDPVKK-IFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFIT 201
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+ E V +L+ ++ + ++K A PK
Sbjct: 202 FKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 79 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Score = 115 (45.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 130
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 131 EHRLDGRVIDPKKAMAMKKDP 151
Score = 112 (44.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
E+++E+F ++GEIE + L DP + RGF FI FK+ E ++K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK 210
Score = 86 (35.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ ++ + ++K A PK
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 232
Score = 64 (27.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 94 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 151
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 272 (100.8 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 53/151 (35%), Positives = 92/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L ++ S++GE+ + T+K+DP TGRSRGF F++FKD ES+++ + + +G +I+
Sbjct: 44 KDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGK-LIDP 102
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP++ +E+++ +F +G I E+P D ++R+ FCF+T
Sbjct: 103 KRAKAIKGKEPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVT 162
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F E V LL+N +I + ++K A PK
Sbjct: 163 FALEEPVQKLLENRYHQIGSGKCEIKVAQPK 193
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L ++ S++GE+ + T+K+DP TGRSRGF F++FKD ES+++
Sbjct: 40 DTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDR 86
Score = 114 (45.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 595 KMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653
K V G+ ITEE L+E+F YGEIE++ L +D T RGF F+ F E ++K +
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKL-L 173
Query: 654 EDVY 657
E+ Y
Sbjct: 174 ENRY 177
Score = 102 (41.0 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCF+TF E V LL+N +I + ++K A PK
Sbjct: 140 EIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPK 193
Score = 94 (38.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 18/74 (24%), Positives = 42/74 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ V +L+
Sbjct: 32 MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLELT 91
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 92 EHKLDGKLIDPKRA 105
Score = 55 (24.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+++ + D + + F F+ F+ V +L+ + K++ K +D K+A
Sbjct: 55 EVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA 105
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 271 (100.5 bits), Expect = 8.4e-23, P = 8.4e-23
Identities = 57/150 (38%), Positives = 88/150 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K PNTGRS+GF FI+FKD S+EK + VI+
Sbjct: 78 KDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 137
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 138 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITF 196
Query: 234 EHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V +L+ I+ + ++K A PK
Sbjct: 197 KEEEPVKKVLEKKFHTISGSKCEIKVAQPK 226
Score = 142 (55.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K PNTGRS+GF FI+FKD S+EK
Sbjct: 74 DTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEK 120
Score = 122 (48.0 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP T + RGF FI FK+ E ++K
Sbjct: 154 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKK 204
Score = 109 (43.4 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + + + K F FI F+ + V +L
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQK 125
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 126 EHRLDGRVIDPKKAMAMKKDP 146
Score = 88 (36.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ F FITF+ E V +L+ I+ + ++K A PK
Sbjct: 173 EIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPK 226
Score = 58 (25.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + + + K F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 89 EVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 146
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 269 (99.8 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 55/151 (36%), Positives = 90/151 (59%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++LK++FSK+GE+ + T+K D NTGRSRGF FI+FK+++S+++ ++ +G + +
Sbjct: 59 KDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQI--D 116
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
IFVGGL+PE +E+I+ +F FG I E+P D S+R+ F FIT
Sbjct: 117 PKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFIT 176
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+ E V +L+ + + ++K A PK
Sbjct: 177 FKEEFAVKKILEKKYHNVCGSKCEIKIAQPK 207
Score = 143 (55.4 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 24/47 (51%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + T+K D NTGRSRGF FI+FK+++S+++
Sbjct: 55 DTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDR 101
Score = 121 (47.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/81 (28%), Positives = 49/81 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F++FG +++ + D + + + F FI F+ V +L+
Sbjct: 47 MFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQK 106
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ +++D K+A K EP
Sbjct: 107 EHRLDGRQIDPKRAMAIKKEP 127
Score = 119 (46.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F +GEIE + L +DP T + RGF FI FK+ +++K
Sbjct: 135 GLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKK 185
Score = 88 (36.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
IET E+P D S+R+ F FITF+ E V +L+ + + ++K A PK
Sbjct: 155 IETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIAQPK 207
Score = 69 (29.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ V +L+ + +++ +++D K+A K EP
Sbjct: 70 EVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEP 127
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 279 (103.3 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 162 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 220
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 221 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 280
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 281 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Score = 115 (45.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 210 EHKLDGKLIDPKRA 223
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 258 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 59 (25.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Query: 489 VDVKKA 494
+D K+A
Sbjct: 218 IDPKRA 223
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 279 (103.3 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 162 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 220
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 221 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 280
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 281 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Score = 115 (45.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 210 EHKLDGKLIDPKRA 223
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 258 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 59 (25.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Query: 489 VDVKKA 494
+D K+A
Sbjct: 218 IDPKRA 223
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 279 (103.3 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K +++ +G +I+
Sbjct: 162 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGK-LIDP 220
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT
Sbjct: 221 KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 280
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ E V LL++ +I + ++K A PK
Sbjct: 281 YTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++L E+ S++GE+ + T+K+DP TGRSRGF F++FKD S++K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Score = 115 (45.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++ + ++FG +++ + D + + F F+ F+ + V +L+
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 247 KQKINDKEVDVKKA 260
+ K++ K +D K+A
Sbjct: 210 EHKLDGKLIDPKRA 223
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL++ +I + ++K A PK
Sbjct: 258 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 59 (25.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 431 DMMHMEVTEAVPM--EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D ++TE + E+++ + D + + F F+ F+ + V +L+ + K++ K
Sbjct: 158 DTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Query: 489 VDVKKA 494
+D K+A
Sbjct: 218 IDPKRA 223
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 262 (97.3 bits), Expect = 8.0e-22, P = 8.0e-22
Identities = 54/131 (41%), Positives = 80/131 (61%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK + VI+
Sbjct: 14 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 73
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
IFVGGL+PE +E+I+ +F +FG I E+P D ++R+ F FITF
Sbjct: 74 KAMAMKKDPVKK-IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITF 132
Query: 234 EHESVVIDLLK 244
+ E V +L+
Sbjct: 133 KEEEPVKKVLE 143
Score = 154 (59.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 10 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 56
Score = 118 (46.6 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F ++GEIE + L DP + + RGF FI FK+ E ++K
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKK 140
Score = 115 (45.5 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F +FG +++ + D + + + F FI F+ + V +L
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 61
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ + +D KKA K +P
Sbjct: 62 EHRLDGRVIDPKKAMAMKKDP 82
Score = 67 (28.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 478
EI E+P D ++R+ F FITF+ E V +L+
Sbjct: 109 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Score = 64 (27.6 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+++ + D + + + F FI F+ + V +L + +++ + +D KKA K +P
Sbjct: 25 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 82
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 259 (96.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 56/170 (32%), Positives = 85/170 (50%)
Query: 99 KNKMVSHPGIVHKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++K + GI ++ E+L HF++YGE+ +K D GRSRGFAF+ F E + A
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Query: 158 SVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP 217
+ A + +FVGGL + ++++++HF QFG + + E P
Sbjct: 87 ----LAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWP 142
Query: 218 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+DK R+NF FI FE E KQ +E DVKKA P+ + F
Sbjct: 143 FDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRF 192
Score = 111 (44.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 593 KNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+NK V G+ +E+ L+ HF ++G+++++ D T R FAFIVF++ ES +KA
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
Query: 652 S 652
S
Sbjct: 168 S 168
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKNPKQKINDKEVDVKKA 494
E+ + ++ YD++ + + F F+ F E + L +Q I K V+VK A
Sbjct: 54 EVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR-EQTIKGKSVEVKPA 104
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 257 (95.5 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 54/142 (38%), Positives = 82/142 (57%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + T+K DPNTGRSRGF FI+FK E + V+ V+A+ H ++
Sbjct: 109 KDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFK-----EPSGVDKVLAQKEHRLDGR 163
Query: 174 XXXXXXXXXXXXX----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
IFVGGL+PE +E I+ +F FG I E+P D ++R+ F
Sbjct: 164 QIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFV 223
Query: 230 FITFEHESVVIDLLKNPKQKIN 251
FITF+ E V +L+ ++
Sbjct: 224 FITFKEEEAVKKILEKKYHNVS 245
Score = 147 (56.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + T+K DPNTGRSRGF FI+FK+ ++K
Sbjct: 105 DTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDK 151
Score = 122 (48.0 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F++FG + + + D + + + F FI F+ S V +L
Sbjct: 97 MFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQK 156
Query: 247 KQKINDKEVDVKKATP-KPEP 266
+ +++ +++D KKA K EP
Sbjct: 157 EHRLDGRQIDPKKAMAMKKEP 177
Score = 120 (47.3 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ + TEE ++E+F +GEIE + L DP + + RGF FI FK+ E+++K
Sbjct: 185 GLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKK 235
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 485
IET E+P D ++R+ F FITF+ E V +L+ ++
Sbjct: 205 IETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVS 245
Score = 70 (29.7 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATP-KPEP 500
E+ + + D + + + F FI F+ S V +L + +++ +++D KKA K EP
Sbjct: 120 EVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEP 177
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 240 (89.5 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 56/163 (34%), Positives = 88/163 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++
Sbjct: 13 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP-----ASVDKVLGQPHHELDSK 67
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 68 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 127
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+ F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 128 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 170
Score = 116 (45.9 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F++FG I E + D + + + F F+TF + V +L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 61 HHELDSKTIDPKVAFPR 77
Score = 109 (43.4 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ + + E++K++F ++G++E+ L D T R RGF F+ F++ + +EK
Sbjct: 86 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK- 144
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 145 -VCEIHFH 151
Score = 96 (38.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501
++ + + +DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 113 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 170
Score = 69 (29.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E + D + + + F F+TF + V +L P +++ K +D K A P+
Sbjct: 24 EIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 77
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 259 (96.2 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T++ LKE+FS++GE++ T+ D TGRSRGF F+ FKD +++ V++ +
Sbjct: 116 GLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLD 175
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G +I+ IFVGG+S E +++ K F QFG +I+ + DK +
Sbjct: 176 GK-IIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRP 234
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+TF+ E+ V L P + I K ++VKKA P+
Sbjct: 235 RGFGFVTFDSEAAVEAALSRPLE-ILGKTIEVKKAQPR 271
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657
+ LKE+FS++GE++ T+ D TGRSRGF F+ FKD +++ V++ Y
Sbjct: 124 QSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEHY 173
Score = 120 (47.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ E D+ +K +F+QFG + E + D + + + F F+TF+ V ++
Sbjct: 112 MFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK- 170
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++ K +D K+A P+ E
Sbjct: 171 EHYLDGKIIDPKRAIPRDE 189
Score = 100 (40.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 591 EAKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
+ K + G+ + TE+ K+ F ++G + + TL D +TGR RGF F+ F D+E+
Sbjct: 190 QEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF-DSEAAV 248
Query: 650 KASV 653
+A++
Sbjct: 249 EAAL 252
Score = 83 (34.3 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+I+ + DK + + F F+TF+ E+ V L P + I K ++VKKA P+
Sbjct: 220 VIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLE-ILGKTIEVKKAQPR 271
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 240 (89.5 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 56/163 (34%), Positives = 88/163 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP-----ASVDKVLGQPHHELDSK 89
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+ F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 116 (45.9 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F++FG I E + D + + + F F+TF + V +L P
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 83 HHELDSKTIDPKVAFPR 99
Score = 109 (43.4 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ + + E++K++F ++G++E+ L D T R RGF F+ F++ + +EK
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK- 166
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 167 -VCEIHFH 173
Score = 96 (38.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501
++ + + +DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 69 (29.3 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E + D + + + F F+TF + V +L P +++ K +D K A P+
Sbjct: 46 EIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 237 (88.5 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 52/144 (36%), Positives = 80/144 (55%)
Query: 123 YGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNXXXXXXXXXX 182
+GE+ + +++DP TGRSRGF F++FK E ASV+ V+ H +++
Sbjct: 34 FGEVVDCIIETDPVTGRSRGFGFVLFK-----EAASVDKVLELKEHKLDSMLIDPKRAKA 88
Query: 183 XXX---XIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
+FVGGLSP+ +E+IK + FG I E+P D ++R+ FCFIT+ E V
Sbjct: 89 LKEPPKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPV 148
Query: 240 IDLLKNPKQKINDKEVDVKKATPK 263
LL+N +I + ++K A PK
Sbjct: 149 KKLLENRYHQIGSGKCEIKVAEPK 172
Score = 107 (42.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657
D E++KE+ +GEIEN+ L D T RGF FI + D + ++K +E+ Y
Sbjct: 104 DTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKL-LENRY 156
Score = 103 (41.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E+P D ++R+ FCFIT+ E V LL+N +I + ++K A PK
Sbjct: 119 EIENIELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKVAEPK 172
Score = 71 (30.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GLS + +++ FG +++ + D + + F F+ F+ + V +L+
Sbjct: 18 MFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLELK 72
Query: 247 KQKINDKEVDVKKATPKPEP 266
+ K++ +D K+A EP
Sbjct: 73 EHKLDSMLIDPKRAKALKEP 92
Score = 59 (25.8 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEP 500
E+++ + D + + F F+ F+ + V +L+ + K++ +D K+A EP
Sbjct: 36 EVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLELKEHKLDSMLIDPKRAKALKEP 92
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 232 (86.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 56/157 (35%), Positives = 86/157 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK +F+K+GE+ + T+K DPNTGRSRGF F++ KD ASVE ++ + H +N
Sbjct: 86 KDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDA-----ASVEKILDQKEHRLNGD 140
Query: 174 XXXXXXXXXXXXX----IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
IFVG L+PE ++ F +FG I E+P D ++R+ F
Sbjct: 141 VIDPEKAKVMKNDPVKKIFVG-LNPEATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFV 197
Query: 230 FITF-EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
FITF E E V +L+ I+ ++ ++K A PK +
Sbjct: 198 FITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKED 234
Score = 142 (55.0 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
++LK +F+K+GE+ + T+K DPNTGRSRGF F++ KD S+EK
Sbjct: 86 KDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEK 128
Score = 101 (40.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 601 GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G+ + TE+ ++ F ++GEIE + L DP + + RGF FI FK+ E K +E
Sbjct: 161 GLNPEATEKNRD-FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLE 213
Score = 99 (39.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVG LS + +++K +F +FG +I+ + D + + + F F+ + + V +L
Sbjct: 74 MFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQK 133
Query: 247 KQKINDKEVDVKKA-TPKPEP 266
+ ++N +D +KA K +P
Sbjct: 134 EHRLNGDVIDPEKAKVMKNDP 154
Score = 87 (35.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITF-EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
EI E+P D ++R+ F FITF E E V +L+ I+ ++ ++K A PK +
Sbjct: 178 EIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKED 234
Score = 56 (24.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA-TPKPEP 500
E+I+ + D + + + F F+ + + V +L + ++N +D +KA K +P
Sbjct: 97 EVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKNDP 154
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 240 (89.5 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 56/163 (34%), Positives = 88/163 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP-----ASVDKVLGQPHHELDSK 89
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+ F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 116 (45.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F++FG I E + D + + + F F+TF + V +L P
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 83 HHELDSKTIDPKVAFPR 99
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ + + E++K++F ++G++E+ L D T R RGF F+ F++ + +EK
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK- 166
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 167 -VCEIHFH 173
Score = 96 (38.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501
++ + + +DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 69 (29.3 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E + D + + + F F+TF + V +L P +++ K +D K A P+
Sbjct: 46 EIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 245 (91.3 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 57/163 (34%), Positives = 89/163 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+A+ +H +++
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADA-----ASVDKVLAQPHHELDSK 89
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+ F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 117 (46.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F++FG I E + D + + + F F+TF + V +L P
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQP 82
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 83 HHELDSKTIDPKVAFPR 99
Score = 109 (43.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ + + E++K++F ++G++E+ L D T R RGF F+ F++ + +EK
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK- 166
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 167 -VCEIHFH 173
Score = 96 (38.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501
++ + + +DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK F
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 70 (29.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E + D + + + F F+TF + V +L P +++ K +D K A P+
Sbjct: 46 EIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPR 99
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 237 (88.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 57/167 (34%), Positives = 92/167 (55%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E LK++F K+GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 114 (45.2 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E +K +F +FG + E+ + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQT 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 105 (42.0 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K++F ++G++++ L D T R RGF F+ F++ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 95 (38.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE+E VV + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 64 (27.6 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E+ + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 45 EVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR 98
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 236 (88.1 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 6 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 60
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 120
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 121 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 167
Score = 113 (44.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 2 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 61
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 62 RHELDSKTIDPKVAFPR 78
Score = 105 (42.0 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K++F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 87 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 145
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 146 -VCEIHFH 152
Score = 92 (37.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 114 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 167
Score = 61 (26.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 25 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 78
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 239 (89.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 55/163 (33%), Positives = 88/163 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++F K+GEI + DP T RSRGF FI F D S++K V+A+ +H +++
Sbjct: 35 DSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDK-----VLAQPHHELDSK 89
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 90 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 267
+ F F+TFE+E +V + + +IN+K V+ KKA PK F
Sbjct: 150 HRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 119 (46.9 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F +FG I E + D + + + F FITF S V +L P
Sbjct: 23 MFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQP 82
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 83 HHELDSKTIDPKVAFPR 99
Score = 108 (43.1 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 606 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
+ E++K++F ++G++E+ L D T R RGF F+ F++ + +EK V +++F+
Sbjct: 122 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK--VCEIHFH 173
Score = 95 (38.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPF 501
++ + + +DK+ ++ + F F+TFE+E +V + + +IN+K V+ KKA PK F
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Score = 73 (30.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI E + D + + + F FITF S V +L P +++ K +D K A P+
Sbjct: 46 EIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPR 99
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 243 (90.6 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 49/158 (31%), Positives = 88/158 (55%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ TE+ L+E+F KYG + ++ + DP TGRSRGF F+ F+ S+++ I +
Sbjct: 165 GLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD 224
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G VI+ IFVGG+ P+++ +E + F+Q+G II+ ++ DK Q
Sbjct: 225 GK-VIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 283
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+T++ V + +N D+++++K+A P+
Sbjct: 284 RGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
Score = 113 (44.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 20/79 (25%), Positives = 49/79 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ + ++ ++ +F ++G + + ++ D + + + F F++FE S V +++K
Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT- 219
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++ K +D K+A P+ E
Sbjct: 220 QHILDGKVIDPKRAIPRDE 238
Score = 89 (36.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+E +E FS++G I + L D +TG+SRGF F+ + +++++
Sbjct: 257 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 299
Score = 81 (33.6 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
II+ ++ DK Q + F F+T++ V + +N D+++++K+A P+
Sbjct: 269 IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 237 (88.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/154 (34%), Positives = 82/154 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV--- 169
E L+++F +YG+I + DP T RSRGF F+ F D S++K + +G V
Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPK 102
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
+ IFVGGLS E++K++F QFG I + + +DK ++ + F
Sbjct: 103 VAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFG 162
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+TF+ E VV + + +IN+K V+ KKA PK
Sbjct: 163 FVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
Score = 116 (45.9 bits), Expect = 0.00097, P = 0.00097
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657
E L+++F +YG+I + DP T RSRGF F+ F D S++K + +
Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTH 92
Score = 112 (44.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F ++G+I E + D + + + F F+TF + V +L
Sbjct: 31 MFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQG 90
Query: 247 KQKINDKEVDVKKATPK 263
+++ K+VD K A P+
Sbjct: 91 THELDGKKVDPKVAFPR 107
Score = 100 (40.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 583 RTHYFYIVEAKNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIV 641
R H + K V G+ T E++K +F ++G IE+ L D T R RGF F+
Sbjct: 108 RAHPKMVTRTKKIFVG--GLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVT 165
Query: 642 FKDTESLEKASVEDVYFY 659
F+ + ++K V +++F+
Sbjct: 166 FQSEDVVDK--VCEIHFH 181
Score = 90 (36.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 442 PMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
P+E + + +DK ++ + F F+TF+ E VV + + +IN+K V+ KKA PK
Sbjct: 143 PIE--DAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
Score = 62 (26.9 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+I E + D + + + F F+TF + V +L +++ K+VD K A P+
Sbjct: 54 DISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 236 (88.1 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 113 (44.8 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 105 (42.0 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K++F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 61 (26.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 45 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 241 (89.9 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 52/158 (32%), Positives = 84/158 (53%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ TEE L HF KYG I + T+ D TGRSRGF F+ F+D +S++ + + +
Sbjct: 168 GLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKDRHVLD 227
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G +I+ IFVGG+ P + +EE F+QFG II+ ++ DK +
Sbjct: 228 GK-LIDPKRAISKEDQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRS 286
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+T++ + V + N + K ++VK+A P+
Sbjct: 287 RGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
Score = 125 (49.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK 247
F+GGLS + +E + +HF ++GNI++ + D + + + F F+TFE V LLK+ +
Sbjct: 165 FIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD-R 223
Query: 248 QKINDKEVDVKKATPKPE 265
++ K +D K+A K +
Sbjct: 224 HVLDGKLIDPKRAISKED 241
Score = 119 (46.9 bits), Expect = 0.00069, P = 0.00069
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 655
D E L HF KYG I + T+ D TGRSRGF F+ F+D +S++ A ++D
Sbjct: 172 DTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVD-ALLKD 222
Score = 98 (39.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV 653
GI +TEE FS++G+I + L D +TGRSRGF F+ + +++K V
Sbjct: 252 GIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCV 305
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+II+ ++ DK + + F F+T++ + V + N + K ++VK+A P+
Sbjct: 271 KIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 231 (86.4 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 53/159 (33%), Positives = 86/159 (54%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+ H +++
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQSRHELDSK 55
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 56 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR 115
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 116 HRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 154
Score = 103 (41.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 132
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 133 -VCEIHFH 139
Score = 61 (26.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 12 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 65
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 235 (87.8 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 113 (44.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 103 (41.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 45 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 235 (87.8 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 113 (44.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 103 (41.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 45 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 235 (87.8 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QFG + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 113 (44.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 103 (41.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 45 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 235 (87.8 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 49/164 (29%), Positives = 84/164 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ ++ T+E LK HF K+G I +V + DP T RSRGF FI + + +++A +
Sbjct: 37 GLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVG L + ++ I+ +F FGNI++ + D
Sbjct: 97 DGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVID 156
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
K +++ F F+ F+ V ++ + ++N K VDVKKA PK
Sbjct: 157 KETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 150 (57.9 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL DE +KAHF ++GNI++ + D + + F FIT+ H S++ + K+
Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 92
Query: 247 KQKINDKEVDVKKATPKPE 265
KI+ + V+ K+A P+ +
Sbjct: 93 PHKIDGRVVEPKRAVPRQD 111
Score = 94 (38.1 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
D + ++++F +G I ++ + D TG+ RGFAF+ F D + ++K ++
Sbjct: 132 DHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Score = 88 (36.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
I++ + DK +++ F F+ F+ V ++ + ++N K VDVKKA PK
Sbjct: 148 IVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 79 (32.9 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I++ + D + + F FIT+ H S++ + K+ KI+ + V+ K+A P+ +
Sbjct: 57 IVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 219 (82.2 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 43/111 (38%), Positives = 67/111 (60%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 111 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 170
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLSP+ +E+I+ +F FG + E+P D ++
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
Score = 149 (57.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 153
Score = 117 (46.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 157
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 60 (26.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGR 633
D E+++E+F +GE+E++ L D T +
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNK 221
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 238 (88.8 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T++ L+++F ++GE+ + T+ D TGRSRGF F+ FK+ + + + ++ +
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLD 228
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G +I+ +FVGG+ + +EE + F QFG +++ + DK +
Sbjct: 229 GK-IIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP 287
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+T+E+ES V + P I+ K V+VK+ATPK
Sbjct: 288 RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 123 (48.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 22/79 (27%), Positives = 48/79 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ E D+ ++ +F QFG +++ + D + + + F F+TF++ V +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK- 223
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++ K +D K+A P+ E
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 100 (40.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 600 PGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657
PG D EE + F+++G + + TL D +TGR RGF F+ +++ ES +A++ Y
Sbjct: 255 PG--DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPY 309
Score = 98 (39.6 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+++ + DK + + F F+T+E+ES V + P I+ K V+VK+ATPK
Sbjct: 273 VLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 68 (29.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+++ + D + + + F F+TF++ V +++ + ++ K +D K+A P+ E
Sbjct: 188 EVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREE 242
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 232 (86.7 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 56/166 (33%), Positives = 87/166 (52%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV-I 163
G +HK T +HF KYGEI + + D +TG+ RGF FI F D ++K +ED +
Sbjct: 24 GGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IEDTHV 82
Query: 164 AEGNHV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPY 218
G V I IFVGG+ + ++E+K FA++GN++E ++
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 219 DKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPK 263
D ++ + F F+ F+ E VV +LL K + D +V++KKA PK
Sbjct: 143 DHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 125 (49.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IF+GGL + + HF ++G I ++ + D+ Q + F FITF SVV ++++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 247 KQKINDKEVDVKKATPK 263
IN K+V++K+ PK
Sbjct: 81 -HVINGKQVEIKRTIPK 96
Score = 109 (43.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 591 EAKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
+ K K + GI +TE ELK+ F+KYG + + D T RSRGF F++F E ++
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 650 K 650
+
Sbjct: 165 E 165
Score = 82 (33.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI ++ + D+ Q + F FITF SVV ++++ IN K+V++K+ PK
Sbjct: 44 EITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT-HVINGKQVEIKRTIPK 96
Score = 81 (33.6 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPK 497
++E ++ D ++ + F F+ F+ E VV +LL K + D +V++KKA PK
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 226 (84.6 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 53/159 (33%), Positives = 85/159 (53%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
E L+E+F ++GE + + DP T RSRGF F+ F D +A V+ V+A+ H +++
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQSRHELDSK 55
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
IFVGGLS E++K +F QFG + + + +DK+ ++
Sbjct: 56 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 115
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 116 HRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 154
Score = 105 (42.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K++F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 132
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 133 -VCEIHFH 139
Score = 58 (25.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
D + + F F+TF ++ V +L + +++ K +D K A P+
Sbjct: 21 DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 65
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 238 (88.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 55/154 (35%), Positives = 86/154 (55%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVIN 171
+++LKE+F+ +G + +V + DP T RSRGF FI F++ ++EK V +G +
Sbjct: 216 SDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDP 275
Query: 172 NXXXXXXX--XXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
IFVGG+S + EE+KA+F+QFG + ET M D+ + + F
Sbjct: 276 KHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFG 335
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+TFE+E VV + + I +K+V+ KKA PK
Sbjct: 336 FVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
Score = 137 (53.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS + +++K +F FG + + + D + + F FITF+ V +LK P
Sbjct: 205 LFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVP 264
Query: 247 KQKINDKEVDVKKATPKPEP 266
++ K++D K ATPK P
Sbjct: 265 IHTLDGKKIDPKHATPKNRP 284
Score = 104 (41.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 593 KNKMVSHPGIV-DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
K K + G+ D EE+K +FS++G +E + D T R RGF F+ F++ + +++
Sbjct: 289 KTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDR- 347
Query: 652 SVEDVYFYS 660
V +++F++
Sbjct: 348 -VCEIHFHT 355
Score = 90 (36.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 442 PMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
P+E ET M D+ + + F F+TFE+E VV + + I +K+V+ KKA PK
Sbjct: 316 PVE--ETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
Score = 83 (34.3 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 457 SQR-KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEP 500
+QR + F FITF+ V +LK P ++ K++D K ATPK P
Sbjct: 240 TQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRP 284
Score = 43 (20.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 354 NHNSDENPTSRSHPSQNAIKL 374
+HN+ NP S++H + A L
Sbjct: 538 HHNAVSNPASQAHSAAAAAAL 558
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 228 (85.3 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 54/167 (32%), Positives = 90/167 (53%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D +A V+ V+A+
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-----QAGVDKVLAQ 80
Query: 166 GNHVINNXXXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
H +++ IFVGGLS E++K +F QF + + +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAML 140
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
Score = 113 (44.8 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K +D K A P+
Sbjct: 82 RHELDSKTIDPKVAFPR 98
Score = 97 (39.2 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 19/68 (27%), Positives = 41/68 (60%)
Query: 593 KNKMVSHPGI-VDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ K + G+ V+ E++K++F ++ ++++ L D T R RGF F+ F+ + +EK
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK- 165
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 166 -VCEIHFH 172
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA PK
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 52/159 (32%), Positives = 79/159 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD V V+A
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC-----VGTVLAS 70
Query: 166 GNHVINNXXXXX-XXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
H ++ IFVGG+ + E++ +F +FG + E M YD K +
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 130
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F FITFE E V + I K+V+VK+A P+
Sbjct: 131 PRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 169
Score = 100 (40.3 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 88 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 147
Query: 651 A 651
A
Sbjct: 148 A 148
Score = 94 (38.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Score = 85 (35.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 117 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 169
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 227 (85.0 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 52/165 (31%), Positives = 85/165 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T E +F K+GE+ + + +D TG RGF F+ F D+ EK ED + +
Sbjct: 72 GVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVID 131
Query: 166 GNHVI------NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
V IFVGGL P ++++E+K +F +G+IIE ++ YD
Sbjct: 132 DRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYD 191
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPK 263
+ + F F+TF+ E V L + K ++ DK+V++K+A PK
Sbjct: 192 HHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 114 (45.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG+S E E +F +FG ++++ + D+ + F F+TF +S V + +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA-DSAVAEKVLEE 126
Query: 247 KQKINDKEVDVKKATPK 263
I+D++VD+K+ P+
Sbjct: 127 DHVIDDRKVDLKRTLPR 143
Score = 100 (40.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K + + G+ + E ELK +F YG+I + D +TGRSRGF F+ F+ +S+++
Sbjct: 154 SKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
Score = 97 (39.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPK 497
+IIE ++ YD + + F F+TF+ E V L + K ++ DK+V++K+A PK
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 71 (30.1 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E++++ + D+ + F F+TF +S V + + I+D++VD+K+ P+
Sbjct: 91 EVVDSVIMTDRITGNPRGFGFVTFA-DSAVAEKVLEEDHVIDDRKVDLKRTLPR 143
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 229 (85.7 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 53/162 (32%), Positives = 84/162 (51%)
Query: 107 GIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T E +HF KYGEI + + D TG+ RGF F+ + D+ ++K ++ I
Sbjct: 48 GLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIII 107
Query: 166 GNHV-INNXX--XXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G V I IFVGG+ + D+E K F QFG + E ++ D S
Sbjct: 108 GKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHST 167
Query: 223 SQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPK 263
+ + F F+T+E E +V LL K + +++ +V++KKA PK
Sbjct: 168 GRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 120 (47.3 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL+ E E HF ++G I ++ + D+ Q + F F+T+ SVV ++++
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 247 KQKINDKEVDVKKATPK 263
I K+V++K+ P+
Sbjct: 103 NHIIIGKQVEIKRTIPR 119
Score = 99 (39.9 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 593 KNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
K K + GI + + E KE F ++GE++ + D +TGRSRGF F+ ++ + ++
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVD 185
Score = 85 (35.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL-KNPKQKINDKEVDVKKATPK 497
E+ E ++ D S + + F F+T+E E +V LL K + +++ +V++KKA PK
Sbjct: 155 ELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 68 (29.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI ++ + D+ Q + F F+T+ SVV ++++ I K+V++K+ P+
Sbjct: 67 EITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD-NHIIIGKQVEIKRTIPR 119
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 205 (77.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 52/160 (32%), Positives = 81/160 (50%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK--ASVEDVI 163
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD + AS +
Sbjct: 61 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL 120
Query: 164 AEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS 223
+G + I+ IFVGG+ + E++ +F +FG + E M YD K
Sbjct: 121 -DGRN-IDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ 178
Query: 224 QRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ + F FITFE E V + I K+V+VK+A P+
Sbjct: 179 RPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 218
Score = 114 (45.2 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 20/79 (25%), Positives = 46/79 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 57 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 116
Query: 247 KQKINDKEVDVKKATPKPE 265
++ + +D K+ P+ +
Sbjct: 117 PHTLDGRNIDPKQKGPRSD 135
Score = 100 (40.3 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 137 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 196
Query: 651 A 651
A
Sbjct: 197 A 197
Score = 85 (35.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 166 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 218
Score = 65 (27.9 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 12/56 (21%), Positives = 31/56 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K+ P+ +
Sbjct: 80 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSD 135
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 39 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 98
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 99 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 158
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 159 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 204
Score = 115 (45.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 129 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Score = 109 (43.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 93
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 94 RPHKVDGRVVEPKRAVSRED 113
Score = 68 (29.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 150 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 204
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 67 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 113
Score = 39 (18.8 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 50 RSHFEQWGTLTDCVVMRD 67
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 187 (70.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 47/174 (27%), Positives = 83/174 (47%)
Query: 96 MEAKNKMVSHPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 155
ME K ++ P + ++ LK++ SK+G++E+ + D +TGRSRGF ++ F E +
Sbjct: 1 MERKLVVLGIPWDID--SDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK 58
Query: 156 KASVEDVIAEGNHVINNXXXXXXXX----XXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
A + GN ++ IFV + + + + ++HF ++G I
Sbjct: 59 NALKGEHFL-GNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 212 IETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ MP D + Q + FITF V DL+++ + V V +ATPK +
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD-LGGTTVAVDRATPKED 170
Score = 117 (46.2 bits), Expect = 0.00079, P = 0.00079
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVG L E ++++ +F +FG+I + +P D +S + F F+TF E+ V D +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFA-ENGVADRVARR 300
Query: 247 KQKINDKEVDVKKATPKPE 265
+I +EV + ATP E
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
Score = 79 (32.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 644
++L+++F ++G I++ + DP RGF F+ F +
Sbjct: 254 DDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
Score = 68 (29.0 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I + +P D +S + F F+TF E+ V D + +I +EV + ATP E
Sbjct: 266 IQDAYIPKDPKRSGHRGFGFVTFA-ENGVADRVARRSHEICGQEVAIDSATPLDE 319
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 203 (76.5 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 40/98 (40%), Positives = 61/98 (62%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + VI+
Sbjct: 13 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK 72
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
IFVGGLSP+ +E+I+ +F FG +
Sbjct: 73 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV 110
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 9 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 55
Score = 117 (46.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 59
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 60 KEHKLNGKVIDPKRA 74
Score = 45 (20.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 604 DKITEELKEHFSKYGEIEN 622
D E+++E+F +GE+E+
Sbjct: 94 DTPEEKIREYFGGFGEVES 112
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 44/166 (26%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 14 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKV 73
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 74 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 133
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 134 SQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQE 179
Score = 119 (46.9 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+ Y
Sbjct: 104 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKI-VDQKYH 162
Query: 659 YSN 661
N
Sbjct: 163 IIN 165
Score = 92 (37.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+ +GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCAR 69
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 70 P-HKVDGRVVEPKRAVSRED 88
Score = 75 (31.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 125 IETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQE 179
Score = 39 (18.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 453 DKSKSQRKNFCFITFEH-ESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ E V + P K++ + V+ K+A + +
Sbjct: 42 DPQTKRSRGFGFVTYSCVEEVDAAVCARP-HKVDGRVVEPKRAVSRED 88
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 198 (74.8 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/166 (25%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT R RGF F+ + E ++ A V
Sbjct: 13 GLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKV 72
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVG + + ++ ++ +F Q+G I E+ D
Sbjct: 73 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTD 132
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ Q++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 133 RGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 115 (45.5 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+E+F +YG+IE + + +D +G+ RGF F+ F D +S++K ++
Sbjct: 103 GSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQ 158
Score = 97 (39.2 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GLS E DE +++HF ++G + + + D + + + F F+T+ V D N
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEV-DAAMNA 67
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 68 RPHKVDGRVVEPKRAVSRED 87
Score = 71 (30.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ Q++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 124 IEVIE--IMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 40 (19.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 41 DPNTKRPRGFGFVTYTTVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 87
Score = 37 (18.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + WG + D +++ D
Sbjct: 24 RSHFERWGTLTDCVVMRD 41
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 206 (77.6 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 15 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKV 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 75 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMED 134
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 135 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 180
Score = 121 (47.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+E+F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 105 GGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 160
Score = 98 (39.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ V +
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 70
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 71 PHKVDGRVVEPKRAVSRED 89
Score = 78 (32.5 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 126 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 180
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ V + K++ + V+ K+A + +
Sbjct: 43 DPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRED 89
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 44/166 (26%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 19 GLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYS-CEEVDAAMCARPHKV 77
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + + ++ +F ++G I E+ D
Sbjct: 78 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMED 137
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 138 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 183
Score = 114 (45.2 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
GI + E L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 109 GIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 163
Score = 108 (43.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V + P
Sbjct: 15 LFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCARP 74
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 75 -HKVDGRVVEPKRAVSRED 92
Score = 78 (32.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 129 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 183
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 145 (56.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL + + E K +F QFG I + + YD + + + F FITF+ E V +L
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 247 KQKINDKEVDVKKATPK 263
++N K V+VK+A PK
Sbjct: 184 FHELNGKMVEVKRAVPK 200
Score = 119 (46.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169
E L+E+F KYG++ + D TGR+RGF FIVF D E+ ++ I +G V
Sbjct: 29 ERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTV 84
Score = 118 (46.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/79 (27%), Positives = 48/79 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GG+S + +E ++ +F ++G+++E + D++ + + F FI F SV ++ +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD- 75
Query: 247 KQKINDKEVDVKKATPKPE 265
K I+ + V+ KKA P+ +
Sbjct: 76 KHIIDGRTVEAKKAVPRDD 94
Score = 110 (43.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
A+ K + G+ ITE E K +F ++G I +V + D NT R RGF FI F ES++
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Score = 85 (35.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
I + + YD + + + F FITF+ E V +L ++N K V+VK+A PK
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 67 (28.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+++E + D++ + + F FI F SV ++ + K I+ + V+ KKA P+ +
Sbjct: 40 DLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD-KHIIDGRTVEAKKAVPRDD 94
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 194 (73.4 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 42/166 (25%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EH K+G + + + +DP T SRGF F+ + E ++ A V
Sbjct: 5 GLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKV 64
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 65 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 124
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 125 RQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQE 170
Score = 115 (45.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K
Sbjct: 95 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 146
Score = 80 (33.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+ +GGLS E D+ ++ H ++G + + + D + F F+T+ E V +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 61 P-HKVDGRVVEPKRAVSRED 79
Score = 78 (32.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 116 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQE 170
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 149 (57.5 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL P + DEE + +F +G + + + YD++ ++ + F F++F+ E V +L
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 247 KQKINDKEVDVKKATPK 263
++ K+V+VK+A PK
Sbjct: 172 FHDLSGKQVEVKRALPK 188
Score = 129 (50.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG+S E +++++ HF +G + + + DK + + F F+ F SV +D +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSV-LDRVLQE 66
Query: 247 KQKINDKEVDVKKATPKPE 265
K I+ +EVDVK+A + E
Sbjct: 67 KHSIDTREVDVKRAMSREE 85
Score = 112 (44.5 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 160
++L+EHF+ YGE+ + D TGR RGF F++F D L++ E
Sbjct: 20 DKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Score = 91 (37.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 593 KNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
K K + G+ +T EE +++F YG + +V + D T R RGF F+ F ++++
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVD 165
Score = 84 (34.6 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ + + YD++ ++ + F F++F+ E V +L ++ K+V+VK+A PK
Sbjct: 136 VTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 74 (31.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+ + + DK + + F F+ F SV +D + K I+ +EVDVK+A + E
Sbjct: 31 EVSQAIVMRDKLTGRPRGFGFVIFSDPSV-LDRVLQEKHSIDTREVDVKRAMSREE 85
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 27 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKV 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMED 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 147 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 192
Score = 121 (47.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+E+F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 117 GGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 172
Score = 98 (39.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ V +
Sbjct: 23 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 83 PHKVDGRVVEPKRAVSRED 101
Score = 78 (32.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 138 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 192
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ V + K++ + V+ K+A + +
Sbjct: 55 DPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRED 101
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 210 (79.0 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 47/166 (28%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ ++ T++ LK HF K+G I +V + DP T RSRGF FI + + ++ A +
Sbjct: 30 GLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKI 89
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E + +FVGGL + +E ++ +F FG I+ + D
Sbjct: 90 DGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSD 149
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K +++ F FI F+ V ++ I +K +DVKKA K +
Sbjct: 150 KDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQD 195
Score = 137 (53.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL D+ +KAHF ++GNI++ + D + + F FIT+ +S +ID +N
Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS-QSYMIDNAQNA 84
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ KI+ + V+ K+A P+ E
Sbjct: 85 RPHKIDGRTVEPKRAVPRQE 104
Score = 117 (46.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYFY 659
G+ D EE L+E+F +G+I +V + SD +TG+ RGFAFI F D + ++K ++ +
Sbjct: 121 GLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI 180
Query: 660 SN 661
N
Sbjct: 181 KN 182
Score = 77 (32.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+I+ + DK +++ F FI F+ V ++ I +K +DVKKA K +
Sbjct: 140 QIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQD 195
Score = 71 (30.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
I++ + D + + F FIT+ +S +ID +N + KI+ + V+ K+A P+ E
Sbjct: 50 IVDVVVMKDPKTKRSRGFGFITYS-QSYMIDNAQNARPHKIDGRTVEPKRAVPRQE 104
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 206 (77.6 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ + +V+KA PK E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Score = 115 (45.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 111 (44.1 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 76 PHKVDGRVVEPKRAVSRED 94
Score = 70 (29.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ + +V+KA PK E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Score = 43 (20.2 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + + F F+T+ V + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 150 (57.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL + +EE K +F QFG I + + YD + + + F FITF+ + V +L
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 247 KQKINDKEVDVKKATPK 263
++N K V+VK+A PK
Sbjct: 172 FHELNGKLVEVKRAVPK 188
Score = 112 (44.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 21/79 (26%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GG+S + +E ++ +F+ +G+++E + D++ + + F FI F V ++ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 247 KQKINDKEVDVKKATPKPE 265
K I+ + V+ KKA P+ +
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
Score = 110 (43.8 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169
E L+++FS YG++ + D TGR+RGF FIVF D E+ ++ I +G V
Sbjct: 20 ERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTV 75
Score = 102 (41.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 593 KNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ K + G+ ITEE K +F ++G I +V + D NT R RGF FI F +++++
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Score = 84 (34.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
I + + YD + + + F FITF+ + V +L ++N K V+VK+A PK
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 61 (26.5 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+++E + D++ + + F FI F V ++ + K I+ + V+ KKA P+ +
Sbjct: 31 DVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD-KHIIDGRTVEAKKAVPRDD 85
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 191 (72.3 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 40/161 (24%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 13 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 72
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E ++ IFVGG+ + ++ ++ +F Q+G E+ D
Sbjct: 73 NGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTD 132
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ +++ F F+TF+ V ++ +N +V+KA
Sbjct: 133 RGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 173
Score = 114 (45.2 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 67
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K+N + V+ K+A + +
Sbjct: 68 RPHKVNGRVVEPKRAVSRED 87
Score = 110 (43.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+ E + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 103 GGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 158
Score = 60 (26.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+IE + D+ +++ F F+TF+ V ++ +N +V+KA
Sbjct: 125 EVIE--IVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 173
Score = 46 (21.3 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K+N + V+ K+A + +
Sbjct: 41 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVNGRVVEPKRAVSRED 87
Score = 39 (18.8 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 24 RSHFEQWGTLTDCVVMRD 41
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 204 (76.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 204 (76.9 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 204 (76.9 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 205 (77.2 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 43/166 (25%), Positives = 81/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ + V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 113 (44.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 69 (29.3 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ + V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00085, Sum P(3) = 0.00085
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEKV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00085, Sum P(3) = 0.00085
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 205 (77.2 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 40 (19.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 453 DKSKSQRKNFCFITFEH-ESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ E V + P K++ + V+ K+A + +
Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSRED 115
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 205 (77.2 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 19 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 79 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 138
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 139 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 184
Score = 118 (46.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 109 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Score = 99 (39.9 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 75 P-HKVDGRVVEPKRAVSRED 93
Score = 78 (32.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 130 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 184
Score = 40 (19.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 453 DKSKSQRKNFCFITFEH-ESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ E V + P K++ + V+ K+A + +
Sbjct: 47 DPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSRED 93
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 204 (76.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 204 (76.9 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 41 (19.5 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 203 (76.5 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 44/154 (28%), Positives = 79/154 (51%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHV--- 169
E L+++F ++GE+ + DP T R+RGF FI F D S++K + + +G +
Sbjct: 59 ENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPK 118
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
+ +F+GGLS E++K +F +G + + + +DK+ + + F
Sbjct: 119 VAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFG 178
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F+TF+ + V + + +IN K V+ KKA PK
Sbjct: 179 FVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 123 (48.4 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + E ++ +F +FG + E + D + + + F FITF S V +L N
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 247 KQKINDKEVDVKKATPK 263
+ +++ K++D K A PK
Sbjct: 107 EHELDGKKIDPKVAFPK 123
Score = 102 (41.0 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 593 KNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
K K V G+ T E++K++F YG++E+ L D T R RGF F+ F E +K
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK- 190
Query: 652 SVEDVYFY 659
V +++F+
Sbjct: 191 -VCEIHFH 197
Score = 80 (33.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ + + +DK+ + + F F+TF+ + V + + +IN K V+ KKA PK
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 76 (31.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+ E + D + + + F FITF S V +L N + +++ K++D K A PK
Sbjct: 70 EVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 206 (77.6 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 39 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKV 98
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 99 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMED 158
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 159 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 204
Score = 121 (47.7 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+E+F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 129 GGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Score = 98 (39.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ V +
Sbjct: 35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 95 PHKVDGRVVEPKRAVSRED 113
Score = 78 (32.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 150 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 204
Score = 39 (18.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ V + K++ + V+ K+A + +
Sbjct: 67 DPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRED 113
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 205 (77.2 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 19 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 79 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 138
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 139 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 184
Score = 118 (46.6 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 109 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Score = 99 (39.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 75 P-HKVDGRVVEPKRAVSRED 93
Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 130 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 184
Score = 40 (19.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 453 DKSKSQRKNFCFITFEH-ESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + F F+T+ E V + P K++ + V+ K+A + +
Sbjct: 47 DPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSRED 93
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 202 (76.2 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TE+ L+ HF ++G++ + + DP RSRGF F+ + ++ A V
Sbjct: 19 GLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTARPHKV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ I+ +F +G I ++ +
Sbjct: 79 DGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEE 138
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+S +++ FCF+TF+ V ++ IN +V+KA PK E
Sbjct: 139 RSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQE 184
Score = 110 (43.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E ++ ++AHF Q+G + + + D + + + F F+T+ S V +
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTAR 74
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 75 PHKVDGRVVEPKRAVSRED 93
Score = 106 (42.4 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE ++E+F YG+IE + + + +TG+ RGF F+ F D ++++K
Sbjct: 109 GGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDK 160
Score = 90 (36.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET ++ ++S +++ FCF+TF+ V ++ IN +V+KA PK E
Sbjct: 130 IETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQE 184
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 43/166 (25%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ K T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 13 GLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 72
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVG + ++ ++ +F Q+G I E+ D
Sbjct: 73 DGRVVEPKRAVSREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTD 129
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 130 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 175
Score = 114 (45.2 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 21/54 (38%), Positives = 38/54 (70%)
Query: 603 VDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
V + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 102 VGEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Score = 105 (42.0 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 9 LFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 67
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 68 RPHKVDGRVVEPKRAVSRED 87
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 121 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 175
Score = 41 (19.5 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 41 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 87
Score = 39 (18.8 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 24 RSHFEQWGTLTDCVVMRD 41
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 202 (76.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQE 185
Score = 115 (45.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQE 185
Score = 41 (19.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + ++ A V
Sbjct: 44 GLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKV 103
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E ++ +FVGG+ + +E ++ +F QFG I E + +
Sbjct: 104 DGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTE 163
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K+ +R+ F FITF+ V ++ +N +V+KA + E
Sbjct: 164 KNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREE 209
Score = 113 (44.8 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE ++AHF Q+G + + + D + + + F F+T+ V +
Sbjct: 40 LFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDAR 99
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 100 PHKVDGRAVEPKRAVSRED 118
Score = 108 (43.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
GI + EE L+E+F ++G+I+ V + ++ N+ + RGFAFI F D +++++ ++
Sbjct: 135 GIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Score = 71 (30.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 430 TDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEV 489
TD H+ +I E + +K+ +R+ F FITF+ V ++ +N
Sbjct: 140 TDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNC 199
Query: 490 DVKKATPKPE 499
+V+KA + E
Sbjct: 200 EVRKALSREE 209
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 44/166 (26%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 161 RQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 131 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Score = 99 (39.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 97 P-HKVDGRVVEPKRAVSRED 115
Score = 78 (32.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 152 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 109 (43.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKVDGRVVEPKRAVSRED 94
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 204 (76.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 41 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 100
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 101 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 160
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 161 RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 206
Score = 115 (45.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 131 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Score = 109 (43.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 95
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 96 RPHKVDGRVVEPKRAVSRED 115
Score = 68 (29.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 152 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 206
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 141 (54.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL + + + K +F QFG + + YD + + + F FIT++ E V +L
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 247 KQKINDKEVDVKKATPK 263
++N K V+VK+A PK
Sbjct: 170 FHELNGKMVEVKRAVPK 186
Score = 127 (49.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GG+S + +E +K +F+ FG +IE + D++ + + F F+ F + V +++
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA-DPAVAEIVITE 66
Query: 247 KQKINDKEVDVKKATPKPE 265
K I+ + V+ KKA P+ +
Sbjct: 67 KHNIDGRLVEAKKAVPRDD 85
Score = 114 (45.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 34/76 (44%), Positives = 44/76 (57%)
Query: 96 MEAKNKMVSHPGIVHKITEE-LKEHFSKYGE-IENVTLKSDPNTGRSRGFAFIVFKDTES 153
M++ N + GI EE LKE+FS +GE IE V LK D TGR+RGF F+VF D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILK-DRTTGRARGFGFVVFADP-- 57
Query: 154 LEKASVEDVIAEGNHV 169
A E VI E +++
Sbjct: 58 ---AVAEIVITEKHNI 70
Score = 96 (38.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G+ +TE + K +F ++G +V + D NT R RGF FI + E++EK
Sbjct: 114 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEK 164
Score = 83 (34.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
YD + + + F FIT++ E V +L ++N K V+VK+A PK
Sbjct: 141 YDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 72 (30.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+IE + D++ + + F F+ F + V +++ K I+ + V+ KKA P+ +
Sbjct: 31 EVIEAVILKDRTTGRARGFGFVVFA-DPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 184 (69.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V
Sbjct: 16 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 75
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVG + + ++ ++ +F Q+G E+ D
Sbjct: 76 DGRVVEPKRAVS-IEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTD 134
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 135 RGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQE 180
Score = 113 (44.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+ E + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 105 GAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Score = 107 (42.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 12 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 70
Query: 247 K-QKINDKEVDVKKA 260
+ K++ + V+ K+A
Sbjct: 71 RPHKVDGRVVEPKRA 85
Score = 67 (28.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 127 EVIE--IVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQE 180
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 27 RSHFEQWGTLTDCVVMRD 44
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKA 494
D + + + F F+T+ V D N + K++ + V+ K+A
Sbjct: 44 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRA 85
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 188 (71.2 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 43/161 (26%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIA 164
G+ + T+E L+ HF ++G + + DPNT RSRGF F+ + E ++ A +
Sbjct: 20 GLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79
Query: 165 EGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
+G V IFVGG+ + ++ ++ + Q+G I E+ D+ +
Sbjct: 80 DGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGK 139
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
++ F F+TF+ V ++ +ND V+KA K E
Sbjct: 140 KRGFAFVTFDDYDSVDKIVIRKYHTVNDHNC-VRKALSKQE 179
Score = 105 (42.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++ +YG+IE + + +D +G+ RGFAF+ F D +S++K
Sbjct: 105 GGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDK 156
Score = 105 (42.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+ E DE +++HF Q+G + E + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ ++A + +
Sbjct: 75 RPHKVDGRVVEPERAVSRED 94
Score = 62 (26.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +ND V+KA K E
Sbjct: 126 IEVIE--IMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNC-VRKALSKQE 179
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 194 (73.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 45/165 (27%), Positives = 79/165 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS-----VE 160
G+ + TEE L+ HF ++G + + DPNT RSRG F+++ E ++ A V+
Sbjct: 20 GLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNARPHVD 79
Query: 161 DVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK 220
+ E ++ IFVGG+ + ++ ++ +F Q+G I E+ D+
Sbjct: 80 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 139
Query: 221 SKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S +K F F+TF+ V ++ +N +V+KA K E
Sbjct: 140 G-SGKKGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQE 183
Score = 103 (41.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 20/56 (35%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ +GFAF+ F D +S++K ++
Sbjct: 109 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQ 163
Score = 91 (37.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E +++HF Q+G + + D + + + F+ + V D N
Sbjct: 16 LFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEV-DAAMNA 74
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++ + V+ K+A + +
Sbjct: 75 RPHVDGRVVEPKRAVSRED 93
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 195 (73.7 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 50/158 (31%), Positives = 81/158 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
GI IT + + E+F +YG +++V + D T R+RGFAF+ + E+ +
Sbjct: 120 GIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELN 179
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G V + IFVGGL+ + ++++F+ FG I ++ D S R
Sbjct: 180 GKRV-DVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGRSR 238
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F F+ F +E+ V +LK+ + KI DK V+V+KA PK
Sbjct: 239 C-FGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPK 275
Score = 89 (36.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI ++ D S R F F+ F +E+ V +LK+ + KI DK V+V+KA PK
Sbjct: 223 EIDVVQIVLDSSGRSRC-FGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPK 275
Score = 85 (35.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ L+ +FS +GEI+ V + D ++GRSR F F+VF + S+ K
Sbjct: 212 DTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAK 253
Score = 82 (33.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK 247
F+GG+ + + I +F Q+G + + D + + F F+T +L++
Sbjct: 117 FIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTH 176
Query: 248 QKINDKEVDVKK 259
+ +N K VDV++
Sbjct: 177 E-LNGKRVDVRE 187
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 195 (73.7 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 50/158 (31%), Positives = 81/158 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
GI IT + + E+F +YG +++V + D T R+RGFAF+ + E+ +
Sbjct: 120 GIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELN 179
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G V + IFVGGL+ + ++++F+ FG I ++ D S R
Sbjct: 180 GKRV-DVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGRSR 238
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F F+ F +E+ V +LK+ + KI DK V+V+KA PK
Sbjct: 239 C-FGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPK 275
Score = 89 (36.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
EI ++ D S R F F+ F +E+ V +LK+ + KI DK V+V+KA PK
Sbjct: 223 EIDVVQIVLDSSGRSRC-FGFVVFSNENSVAKVLKHKRHKIYDKMVEVRKAEPK 275
Score = 85 (35.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ L+ +FS +GEI+ V + D ++GRSR F F+VF + S+ K
Sbjct: 212 DTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAK 253
Score = 82 (33.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK 247
F+GG+ + + I +F Q+G + + D + + F F+T +L++
Sbjct: 117 FIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTH 176
Query: 248 QKINDKEVDVKK 259
+ +N K VDV++
Sbjct: 177 E-LNGKRVDVRE 187
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 184 (69.8 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 41/162 (25%), Positives = 77/162 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E +++ + E
Sbjct: 27 GLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDRKDHTRWMEE 86
Query: 166 -GN-HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS 223
N ++ IFVGG+ + ++ ++ + Q+G I E+ D+
Sbjct: 87 LWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSG 146
Query: 224 QRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 147 KKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 188
Score = 101 (40.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++ +YG+IE V + +D +G+ GFAF+ F D +S++K ++
Sbjct: 113 GGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQ 168
Score = 89 (36.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+F GGL+ E DE +++HF Q+G + + + D + + + F F+T+
Sbjct: 23 LFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 69
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 195 (73.7 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 45/168 (26%), Positives = 81/168 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+ HF ++G + + + DPNT RSRGF F+ + + + + V
Sbjct: 39 GLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDARPHKV 98
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F QFG I E+ D
Sbjct: 99 DGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVD 158
Query: 220 KSKSQRKNFCFITFE-HESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
++ F F+TF+ H+SV D + K +N +V+KA K E
Sbjct: 159 HKTGNKRGFAFVTFDDHDSV--DRIVIQKYHTVNGHNCEVRKALSKQE 204
Score = 110 (43.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
GI D TEE L+++F ++G+IE V + D TG RGFAF+ F D +S+++ ++
Sbjct: 130 GIKDD-TEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQ 184
Score = 107 (42.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++AHF Q+G + + + D + + + F F+T+ V +
Sbjct: 35 LFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDAR 94
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 95 PHKVDGRLVEPKRAVSRED 113
Score = 63 (27.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
+E++E + D ++ F F+TF+ H+SV D + K +N +V+KA K E
Sbjct: 150 IEVVEIMV--DHKTGNKRGFAFVTFDDHDSV--DRIVIQKYHTVNGHNCEVRKALSKQE 204
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 190 (71.9 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 44/166 (26%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + DPNT RSRGF F++F E ++ A V
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNARPNKV 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E ++ IFVGG+ + ++ E +F Q+G E+ D
Sbjct: 80 NGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHE--DYFEQYGKFEVIEVMTD 137
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF++ V ++ +N +V+KA K E
Sbjct: 138 QGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLKQE 183
Score = 105 (42.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 601 GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE +++F +YG+ E + + +D +G+ RGFAF+ F + +S+++ ++
Sbjct: 110 GGIKEDTEEHEDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQ 163
Score = 90 (36.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GLS E DE +++HF Q+G + + D + + + F F+ F V D N
Sbjct: 16 LFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKK 259
+ K+N + ++ K+
Sbjct: 75 RPNKVNGRVLEPKR 88
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 180 (68.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/161 (26%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ TEE LK + ++G++ +V + D T RSRGF FI + + +++A +
Sbjct: 38 GLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E + +FVGGL +E ++ +F QFGN++ ++ D
Sbjct: 98 DGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTD 157
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
K+ +R+ F F+ F+ V + + I VDVKK+
Sbjct: 158 KTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Score = 130 (50.8 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 25/80 (31%), Positives = 49/80 (61%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL+P +E +K + Q+G +++ + D + + + F FIT+ +S+++D +
Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYT-KSLMVDRAQEN 92
Query: 247 KQKIND-KEVDVKKATPKPE 265
+ I D K V+ K+A P+PE
Sbjct: 93 RPHIIDGKTVEAKRALPRPE 112
Score = 113 (44.8 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ D EE L+E+F ++G + +V L +D TG+ RGFAF+ F D ++++KA
Sbjct: 129 GLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Score = 73 (30.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIND-KEVDVKKATPKPE 499
++++ + D + + + F FIT+ +S+++D + + I D K V+ K+A P+PE
Sbjct: 57 KVVDVVVMRDAATKRSRGFGFITYT-KSLMVDRAQENRPHIIDGKTVEAKRALPRPE 112
Score = 64 (27.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
++ ++ DK+ +R+ F F+ F+ V + + I VDVKK+
Sbjct: 149 VVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 193 (73.0 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 45/167 (26%), Positives = 83/167 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L +F ++G+I + + + +GRSRGF F+ F D +V V+
Sbjct: 13 GLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADP-----TNVNHVLQN 67
Query: 166 GNHVIN---------NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEM 216
G H ++ N +F+GGL + + +++ F ++G + E +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
Query: 217 PYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
YD+ K + + F F++FE ES V + +N K+V++KKA P+
Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
Score = 115 (45.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLS E E + +F +FG+II+ + + + + F F+TF + V +L+N
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K P+
Sbjct: 69 PHTLDGRTIDPKPCNPR 85
Score = 95 (38.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G+ +TE +L+ F++YG++ V + D +SRGF F+ F++ S+E + E
Sbjct: 102 GLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Score = 94 (38.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
++ E + YD+ K + + F F++FE ES V + +N K+V++KKA P+
Sbjct: 121 KVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 134 (52.2 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGL P + +E +A+F +G + + + D++ + + F F++F+ E V +L
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 247 KQKINDKEVDVKKATPK 263
+N K+V+VK+A PK
Sbjct: 172 FHDLNGKQVEVKRALPK 188
Score = 122 (48.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 22/79 (27%), Positives = 48/79 (60%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GG+S + + ++ +F+ FG +++ + +K+ + + F F+ F + VID +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFS-DPAVIDRVLQD 66
Query: 247 KQKINDKEVDVKKATPKPE 265
K I++++VDVK+A + E
Sbjct: 67 KHHIDNRDVDVKRAMSREE 85
Score = 105 (42.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 113 TEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVI 170
T+E L+E+FS +GE+ VT+ + TGR RGF F+ F D A ++ V+ + +H+
Sbjct: 17 TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP-----AVIDRVLQDKHHID 71
Query: 171 N 171
N
Sbjct: 72 N 72
Score = 83 (34.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 593 KNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
+ K + G+ +T +E + +F YG + + + D T R RGF F+ F +S++
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVD 165
Score = 79 (32.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
E+++ + +K+ + + F F+ F + VID + K I++++VDVK+A + E
Sbjct: 31 EVLQVTVMREKATGRPRGFGFVAFS-DPAVIDRVLQDKHHIDNRDVDVKRAMSREE 85
Score = 73 (30.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
D++ + + F F++F+ E V +L +N K+V+VK+A PK
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 185 (70.2 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 42/164 (25%), Positives = 79/164 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVF---KDTESLEKASVEDV 162
G+ + T E L+ HF ++G + + + DPNT SRGF F+ + K+ ++ V+
Sbjct: 20 GLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARSHKVDGR 79
Query: 163 IAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
+ E ++ IFVGG+ + ++ ++ +F Q+G I E+ D+
Sbjct: 80 VVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGS 139
Query: 223 SQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ F +TF+ H+ I + K +N +V+KA K E
Sbjct: 140 GKKRGFASVTFDDHDKDKIVIQKY--YIVNGHNCEVRKALSKQE 181
Score = 98 (39.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVY 657
G + + TEE L+++F +YG+IE + + +D +G+ RGFA + F D + +K ++ Y
Sbjct: 107 GGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKIVIQKYY 164
Score = 94 (38.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E +++HF Q+G + + + D + + F F+T+ V D ++
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEV-DAARS- 73
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+A + +
Sbjct: 74 -HKVDGRVVEPKRAVSRED 91
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 187 (70.9 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 46/168 (27%), Positives = 83/168 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A +
Sbjct: 29 GLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNARPQKM 87
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F Q+G I E+ D
Sbjct: 88 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 147
Query: 220 KSKSQRKNFCFITFE-HESVVIDLLKNPKQKI-NDKEVDVKKATPKPE 265
+ +++ F F+TF+ H+SV D + K N +V+KA K E
Sbjct: 148 RGSGKKRGFAFVTFDDHDSV--DKIVIQKYHTGNGHNCEVRKALSKQE 193
Score = 115 (45.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 118 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 173
Score = 104 (41.7 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGMLTDCVV-MDPNTKRSRGFGFVTYTTVEEV-DAAMNA 82
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ QK++ + V+ K+A + +
Sbjct: 83 RPQKMDGRVVEPKRAVSRED 102
Score = 63 (27.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKNPKQKI-NDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ H+SV D + K N +V+KA K E
Sbjct: 139 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSV--DKIVIQKYHTGNGHNCEVRKALSKQE 193
Score = 44 (20.5 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + QK++ + V+ K+A + +
Sbjct: 56 DPNTKRSRGFGFVTYTTVEEV-DAAMNARPQKMDGRVVEPKRAVSRED 102
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 378 RSSYREWGHVADNLLLCDN 396
RS + +WG + D +++ N
Sbjct: 40 RSHFEQWGMLTDCVVMDPN 58
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 170 (64.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT+ E V LL++
Sbjct: 31 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESR 90
Query: 247 KQKINDKEVDVKKATPK 263
+I + ++K A PK
Sbjct: 91 YHQIGSGKCEIKVAQPK 107
Score = 115 (45.5 bits), Expect = 0.00036, P = 0.00036
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 39 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 85
Score = 113 (44.8 bits), Expect = 0.00060, P = 0.00060
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 43 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 85
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 170 (64.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGLSP+ +E+IK +F FG I E+P D ++R+ FCFIT+ E V LL++
Sbjct: 27 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESR 86
Query: 247 KQKINDKEVDVKKATPK 263
+I + ++K A PK
Sbjct: 87 YHQIGSGKCEIKVAQPK 103
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 35 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 81
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
E++KE+F +GEIEN+ L D T RGF FI + D E ++K
Sbjct: 39 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 81
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 135 (52.6 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E+K +F +FG + E M YD K + + F FITFE E V +
Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 175
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 176 FHDIMGKKVEVKRAEPR 192
Score = 119 (46.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 99 (39.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
ELKE+F+++G + V + D R RGF FI F+D +S+++A
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171
Score = 85 (35.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 140 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192
Score = 70 (29.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 169 (64.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 41/156 (26%), Positives = 71/156 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 82
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 83 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFG 142
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F+ I V+VKKA PK +
Sbjct: 143 FVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 111 (44.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F+ ++ +K
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 154
Query: 651 ASV 653
A+V
Sbjct: 155 AAV 157
Score = 110 (43.8 bits), Expect = 0.00090, P = 0.00089
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 98 AKNKMVSHPGIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F+ ++ +K
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 154
Query: 157 ASV 159
A+V
Sbjct: 155 AAV 157
Score = 64 (27.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 13/80 (16%), Positives = 38/80 (47%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+ +G + + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 69 P-HAVDGNTVELKRAVSRED 87
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 133 (51.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VKKA P+
Sbjct: 175 FHDIMGKKVEVKKAEPR 191
Score = 121 (47.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++ +F+Q+G +++ + DKS +Q + F F+ F+ + V +L
Sbjct: 13 LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTK 72
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 73 PHNLDGRNIDPKPCTPR 89
Score = 101 (40.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D +T +SRGF F+ FKD
Sbjct: 17 GLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKD 61
Score = 91 (37.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 593 KNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
K+K + GI E EL+++F+++G + V + D R RGF FI F+ +S+++A
Sbjct: 111 KSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQA 170
Score = 87 (35.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VKKA P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPR 191
Score = 75 (31.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DKS +Q + F F+ F+ + V +L ++ + +D K TP+
Sbjct: 36 EVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTKPHNLDGRNIDPKPCTPR 89
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 133 (51.9 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 105 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 164
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 165 FHDIMGKKVEVKRAEPR 181
Score = 119 (46.9 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 62 PHTLDGRNIDPKPCTPR 78
Score = 100 (40.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 6 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 50
Score = 100 (40.3 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 100 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Query: 651 A 651
A
Sbjct: 160 A 160
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 129 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 181
Score = 70 (29.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 25 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 182 (69.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 46/167 (27%), Positives = 82/167 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ HF ++G + + DPNT RSRGF F+ + E ++ A V
Sbjct: 20 GLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ E ++ ++ +F ++G I E+ D
Sbjct: 79 DGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIK-ENTEDHLRDYF-EYGKIEVIEIMTD 136
Query: 220 KSKSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ H+SV D + +N +V+KA K E
Sbjct: 137 RGSGKKRGFTFVTFDDHDSV--DKIIQKYHTVNGHNCEVRKALSKQE 181
Score = 104 (41.7 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 601 GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
GI + + L+++F +YG+IE + + +D +G+ RGF F+ F D +S++K
Sbjct: 110 GIKENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDK 158
Score = 94 (38.1 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF ++G + + D + + + F F+T+ V D N
Sbjct: 16 LFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 73
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 74 RPHKVDGRVVEPKRAVSRED 93
Score = 71 (30.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ H+SV D + +N +V+KA K E
Sbjct: 128 IEVIE--IMTDRGSGKKRGFTFVTFDDHDSV--DKIIQKYHTVNGHNCEVRKALSKQE 181
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 133 (51.9 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 105 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 164
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 165 FHDIMGKKVEVKRAEPR 181
Score = 119 (46.9 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 62 PHTLDGRNIDPKPCTPR 78
Score = 100 (40.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 6 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 50
Score = 99 (39.9 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 593 KNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++A
Sbjct: 101 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 129 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 181
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 25 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+ HF ++ + + L DPN+ RSRGF I + E ++ A V
Sbjct: 6 GLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNARPHKV 65
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG + ++ ++ +F Q+G I E+ D
Sbjct: 66 DGRVVEPKVAVSREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTD 125
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ F F+TF+ + V +++ +N +V+KA K E
Sbjct: 126 IGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLKQE 171
Score = 104 (41.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 607 TEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
TEE L+ +F +YG+IE + + +D +G+ RGFAF+ F D +S++ ++
Sbjct: 102 TEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQ 151
Score = 85 (35.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ +++HF Q+ + + + D + + + F I + V D N
Sbjct: 2 LFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEV-DAAMNA 60
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K A + +
Sbjct: 61 RPHKVDGRVVEPKVAVSRED 80
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 183 (69.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 40/158 (25%), Positives = 72/158 (45%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF + G + + + DPNT RSRGF F+ + E ++ A V+ + E
Sbjct: 28 ESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPK 87
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ IF GG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 88 RTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 148 FAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
Score = 115 (45.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 95 (38.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GG S E DE +++HF Q G + + + D + + + F F+T+ V +
Sbjct: 16 LFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHAR 75
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ K+ + K +
Sbjct: 76 PHKVDGRVVEPKRTSSKED 94
Score = 66 (28.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 131 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 133 (51.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 114 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 173
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 174 FHDIMGKKVEVKRAEPR 190
Score = 119 (46.9 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 109 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 168
Query: 651 A 651
A
Sbjct: 169 A 169
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 138 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 190
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 133 (51.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 175 FHDIMGKKVEVKRAEPR 191
Score = 119 (46.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 651 A 651
A
Sbjct: 170 A 170
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 133 (51.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 175 FHDIMGKKVEVKRAEPR 191
Score = 119 (46.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 651 A 651
A
Sbjct: 170 A 170
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 133 (51.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 175 FHDIMGKKVEVKRAEPR 191
Score = 119 (46.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 651 A 651
A
Sbjct: 170 A 170
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 133 (51.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 175 FHDIMGKKVEVKRAEPR 191
Score = 119 (46.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 651 A 651
A
Sbjct: 170 A 170
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 133 (51.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + E++ +F +FG + E M YD K + + F FITFE E V +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 247 KQKINDKEVDVKKATPK 263
I K+V+VK+A P+
Sbjct: 175 FHDIMGKKVEVKRAEPR 191
Score = 119 (46.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL E ++++F+Q+G +++ + DK+ +Q + F F+ F+ + V +L +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 247 KQKINDKEVDVKKATPK 263
++ + +D K TP+
Sbjct: 72 PHTLDGRNIDPKPCTPR 88
Score = 100 (40.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKD 150
G+ T+E L+ +FS+YGE+ + + D T +SRGF F+ FKD
Sbjct: 16 GLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Score = 100 (40.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+K+ + GI E EL+E+F K+G + V + D R RGF FI F+D +S+++
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 651 A 651
A
Sbjct: 170 A 170
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+ E M YD K + + F FITFE E V + I K+V+VK+A P+
Sbjct: 139 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
E+++ + DK+ +Q + F F+ F+ + V +L + ++ + +D K TP+
Sbjct: 35 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGG+ + ++ ++ +F Q+G I E+ D+ +++ F F+TF+ V ++
Sbjct: 58 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 117
Query: 247 KQKINDKEVDVKKATPKPE 265
+N +V+KA K E
Sbjct: 118 YHTVNGHNCEVRKALSKQE 136
Score = 116 (45.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 61 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT 120
Query: 165 EGNH 168
H
Sbjct: 121 VNGH 124
Score = 115 (45.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 61 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Score = 74 (31.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIE 213
+F+GGLS E DE +++HF Q+G + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTD 42
Score = 41 (19.5 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFI--VFKDTE 152
G+ + T+E L+ HF ++G + + P + F+ + +DTE
Sbjct: 20 GLSFETTDESLRSHFEQWGTLTDCVDSQRPGAHLTVKKIFVGGIKEDTE 68
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 46/166 (27%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA- 164
G+ + TE L+EHF+ YG + + + +P T RSR F F+ + E + A A
Sbjct: 34 GLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAASPHAV 93
Query: 165 EGNHV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+GN V ++ +FVGGL ++ + ++ HF+QFG + + E+ D
Sbjct: 94 DGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIAD 153
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K +++ F F+ F++ I V+VKKA PK +
Sbjct: 154 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 199
Score = 108 (43.1 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L +HFS++G +E + +D +G+ RGF F+ F++ ++ +K
Sbjct: 116 AKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 175
Query: 651 ASV 653
A+V
Sbjct: 176 AAV 178
Score = 79 (32.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HFA +G + + + + + + F F+T+ E + +
Sbjct: 30 LFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAAS 89
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 90 P-HAVDGNSVELKRAVSRED 108
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 140 (54.3 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLS +EE K++F +FG + + +D ++ + F F+T++ E V ++++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSN 181
Query: 247 KQKINDKEVDVKKATPK 263
+++DK V+VK+A PK
Sbjct: 182 FHELSDKRVEVKRAIPK 198
Score = 118 (46.6 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGG++ E +E +K +F+++G ++E + +K + + F F+ F ++ V+ L++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 247 KQKINDKEVDVKKATPKPE 265
I K VDV+KA K E
Sbjct: 68 -HFILGKPVDVRKAIRKHE 85
Score = 92 (37.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 590 VEAKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
V ++ K + G+ TEE K +F ++G +V + D T R RGF F+ + +S+
Sbjct: 115 VTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 649 E 649
E
Sbjct: 175 E 175
Score = 90 (36.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
GI + +EE LK++FS+YG + + + TG+ RGF F+ F + + KA
Sbjct: 12 GIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Score = 74 (31.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 452 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 497
+D ++ + F F+T++ E V ++++ +++DK V+VK+A PK
Sbjct: 153 HDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 41/160 (25%), Positives = 77/160 (48%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFI-VFKDTESLEKA------SVEDVIAEG 166
+ L+EHF K+G ++ V ++ D RSR F F+ + + ++ A V+ + E
Sbjct: 32 DSLREHFEKWGTLDCVVMR-DLQIKRSRSFGFVSTYSCVKEVDAAMCARPHKVDGHVVEP 90
Query: 167 NHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
++ IFVGG+ + ++ ++ +F ++G I E+ D+ +++
Sbjct: 91 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKR 150
Query: 227 NFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ H++V D + IN +VKKA K E
Sbjct: 151 GFAFVTFDDHDTV--DKIVQKYHTINGHNYEVKKAVSKQE 188
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K I
Sbjct: 114 GGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDK------IV 167
Query: 165 EGNHVIN 171
+ H IN
Sbjct: 168 QKYHTIN 174
Score = 112 (44.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K
Sbjct: 114 GGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDK 165
Score = 64 (27.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFI-TFEHESVVIDLLKN 245
+F+G LS E D+ ++ HF ++G + + + D + ++F F+ T+ V +
Sbjct: 20 LFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAMCA 78
Query: 246 PKQKINDKEVDVKKATPKPE 265
K++ V+ K+A + +
Sbjct: 79 RPHKVDGHVVEPKRAVSRED 98
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 183 (69.5 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 39/166 (23%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 15 GLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +FA++G I E+ D
Sbjct: 75 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITD 134
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 135 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Score = 103 (41.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 18/52 (34%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F++YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Score = 94 (38.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 71 PHSIDGRVVEPKRAVAREE 89
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 186 (70.5 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 54/173 (31%), Positives = 89/173 (51%)
Query: 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSR--GFAFIVFKDTESLEKASVEDVIAEGNHV 169
+TE L+E+F ++GE++ + DP T RSR GF F+ F D +A V+ V+A+ H
Sbjct: 119 VTEGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMD-----QAGVDKVLAQSRHE 173
Query: 170 INNXXXXXX-------------XXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI-IETE 215
+++ IFVGGLS E++K +F QF + ++
Sbjct: 174 LDSKTVQIDPKVAFPRRAQPKVQMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDA 233
Query: 216 M-PYDKSKSQRKN--FCFITFEHESVVIDLLKNPKQKINDK--EVDVKKATPK 263
M +DK+ ++ + F F+TFE E +V + + +IN+K +V+ KKA PK
Sbjct: 234 MLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQVECKKAQPK 286
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 180 (68.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 47/166 (28%), Positives = 81/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIA 164
G+ + T+E L+ HF +YG++ + + + RSR F F+ + TE + A S I
Sbjct: 12 GLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSARPHIV 71
Query: 165 EGNHV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+GN+V + IFVGGL +++DE ++ +F+QFG I + ++ D
Sbjct: 72 DGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITD 131
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K +++ F F+ F+ + I +V+VKKA K E
Sbjct: 132 KDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQE 177
Score = 126 (49.4 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 592 AKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ D I +E L+++FS++G IE + +D +TG+ RGF F+ F D +S +K
Sbjct: 94 AKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADK 153
Query: 651 ASV 653
A V
Sbjct: 154 AVV 156
Score = 99 (39.9 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL+ + DE ++AHF Q+G + + + ++ + + F F+T+ D +
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEA-DAAMSA 66
Query: 247 KQKIND-KEVDVKKATPKPE 265
+ I D VD+K+A + +
Sbjct: 67 RPHIVDGNNVDLKRAVARED 86
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 178 (67.7 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 26 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 85
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 86 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 145
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 146 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 191
Score = 102 (41.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 116 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 167
Score = 97 (39.2 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 82 PHSIDGRVVEPKRAVAREE 100
Score = 64 (27.6 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 137 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 191
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 179 (68.1 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 45/179 (25%), Positives = 89/179 (49%)
Query: 96 MEAKN-KMVSHPGIVHKITEEL-KEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 153
+E +N + + G+ T++L +E +S++GEI ++ + DP T RSRGF F+ F
Sbjct: 17 LEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
Query: 154 LEKASVEDV-IAEGNHV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQ 207
++ A + I +G V + ++V G+ + ++ + +F +
Sbjct: 77 VDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTK 136
Query: 208 FGNIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+G + ++E+ DK+ + + F F+TF+ H+SV +L+ +N DV+K K E
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK-SHMVNGHRCDVRKGLSKDE 194
Score = 93 (37.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 590 VEAKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
V K VS G+ + TE+ L E+F+KYG + + D T + RGF F+ F D +S+
Sbjct: 111 VSTKRLYVS--GVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Query: 649 EKASVE 654
++ ++
Sbjct: 169 DQCVLQ 174
Score = 67 (28.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
EI + + D + + + F F+TF ++ V +K I+ K VD K+A P+ +
Sbjct: 48 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 179 (68.1 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQE 192
Score = 102 (41.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
Score = 65 (27.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQE 192
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 178 (67.7 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 15 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 75 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 134
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 135 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Score = 102 (41.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
Score = 97 (39.2 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 71 PHSIDGRVVEPKRAVAREE 89
Score = 64 (27.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 126 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 45/163 (27%), Positives = 80/163 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE-KASVEDVIA 164
G+ + T+E L+ F + G + + ++ DPN RSRGF F+ + E ++ + V++ +
Sbjct: 20 GLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEVKGRPHVDERVV 79
Query: 165 EGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
E I+ +FVGG+ + ++ ++ +F Q+G I E+ D+ +
Sbjct: 80 EPKWAISREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK 139
Query: 225 RKNFCFITFE-HESVVIDLLKNPKQKI-NDKEVDVKKATPKPE 265
R F FI F+ H+S ID + K N +V+KA K E
Sbjct: 140 R-GFAFILFDDHDS--IDKIVIQKYHTGNGLNCEVRKALSKQE 179
Score = 109 (43.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG IE + + +D +G+ RGFAFI+F D +S++K ++
Sbjct: 105 GGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQ 159
Score = 84 (34.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/79 (24%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++ F Q G + + + D + + + F F+T+ ++ +K
Sbjct: 16 LFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTY----ATVEEVKG- 70
Query: 247 KQKINDKEVDVKKATPKPE 265
+ ++++ V+ K A + +
Sbjct: 71 RPHVDERVVEPKWAISRED 89
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 26 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 85
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 86 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 145
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 146 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 191
Score = 102 (41.0 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 116 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 167
Score = 97 (39.2 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 82 PHSIDGRVVEPKRAVAREE 100
Score = 64 (27.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 137 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 191
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
Score = 102 (41.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
Score = 64 (27.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
Score = 102 (41.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
Score = 64 (27.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
Score = 102 (41.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
Score = 64 (27.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 38/166 (22%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V + IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQE 192
Score = 102 (41.0 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
Score = 63 (27.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V + IN +V+KA + E
Sbjct: 138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQE 192
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 37/132 (28%), Positives = 65/132 (49%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V + E
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPQKVNGRVVEPK 87
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ IFVGG+ E + ++ +F Q+G E+ D+ + +++
Sbjct: 88 RAVSREDSQRPGAHLTVKKIFVGGIK-EDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRG 146
Query: 228 FCFITFE-HESV 238
F F+TF+ H+SV
Sbjct: 147 FAFVTFDDHDSV 158
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+G LS E DE +++HF Q+G + + + D + + + F F+T+ V D N
Sbjct: 16 LFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ QK+N + V+ K+A + +
Sbjct: 75 RPQKVNGRVVEPKRAVSRED 94
Score = 109 (43.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 601 GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
GI + L+++F +YG+ E + + +D G+ RGFAF+ F D +S++K ++
Sbjct: 111 GIKEDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQ 164
Score = 55 (24.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFE-HESV 472
E+IE + D+ + +++ F F+TF+ H+SV
Sbjct: 131 EVIE--IMTDRGRGKKRGFAFVTFDDHDSV 158
Score = 51 (23.0 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + QK+N + V+ K+A + +
Sbjct: 48 DPNTKRSRGFGFVTYATVEEV-DAAMNARPQKVNGRVVEPKRAVSRED 94
Score = 39 (18.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 378 RSSYREWGHVADNLLLCD 395
RS + +WG + D +++ D
Sbjct: 31 RSHFEQWGTLTDCVVMRD 48
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 175 (66.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 37/166 (22%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A ++
Sbjct: 23 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTI 82
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 83 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 142
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 143 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 188
Score = 102 (41.0 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 113 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 164
Score = 96 (38.9 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 79 PHTIDGRVVEPKRAVAREE 97
Score = 64 (27.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
I+T E+ D+ +++ F F+TF+ V ++ IN +V+KA + E
Sbjct: 134 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 188
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 173 (66.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 82
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 83 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 142
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F++ I V+VKKA PK +
Sbjct: 143 FVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 112 (44.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F++ ++ +K
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154
Query: 651 ASV 653
A+V
Sbjct: 155 AAV 157
Score = 82 (33.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 69 P-HAVDGNTVELKRAVSRED 87
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 173 (66.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 28 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 87
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 88 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 147
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F++ I V+VKKA PK +
Sbjct: 148 FVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 183
Score = 112 (44.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F++ ++ +K
Sbjct: 100 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 159
Query: 651 ASV 653
A+V
Sbjct: 160 AAV 162
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 74 P-HAVDGNTVELKRAVSRED 92
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 173 (66.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 82
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 83 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 142
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F++ I V+VKKA PK +
Sbjct: 143 FVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 112 (44.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F++ ++ +K
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154
Query: 651 ASV 653
A+V
Sbjct: 155 AAV 157
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 69 P-HAVDGNTVELKRAVSRED 87
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 28 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 87
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 88 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 147
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F++ I V+VKKA PK +
Sbjct: 148 FVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 183
Score = 112 (44.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F++ ++ +K
Sbjct: 100 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 159
Query: 651 ASV 653
A+V
Sbjct: 160 AAV 162
Score = 82 (33.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 73
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 74 P-HAVDGNTVELKRAVSRED 92
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 36 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 95
Query: 247 KQKINDKEVDVKKATPKPE 265
+ + ++K A K +
Sbjct: 96 YHNVGLSKCEIKVAMSKEQ 114
Score = 109 (43.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 44 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 90
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 48 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 90
Score = 38 (18.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 240 IDLLKNPKQ-KINDKEVDVKKA 260
+D + + K+ K+N K +D K+A
Sbjct: 3 VDKVMDQKEHKLNGKVIDPKRA 24
Score = 38 (18.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 474 IDLLKNPKQ-KINDKEVDVKKA 494
+D + + K+ K+N K +D K+A
Sbjct: 3 VDKVMDQKEHKLNGKVIDPKRA 24
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 35/140 (25%), Positives = 72/140 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+G + + + DP T RSR F+F+ + + ++ A +V
Sbjct: 19 GLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 79 DGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMED 138
Query: 220 KSKSQRKNFCFITFE-HESV 238
+ S ++ F+TF+ H++V
Sbjct: 139 RL-SGKERLLFVTFDDHDTV 157
Score = 94 (38.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++G + + + D + ++F F+T+ V +
Sbjct: 15 LFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQ 74
Query: 247 KQKINDKEVDVKKATPKPE 265
++ + V+ K+A + +
Sbjct: 75 PHNVDGRVVEPKRAVSRED 93
Score = 80 (33.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F KYG+I+ + + D +G+ R F+ F D ++++K
Sbjct: 109 GGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLSGKER-LLFVTFDDHDTVDK 159
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K+ + + + DP T RSRGF F V+ E ++ A V
Sbjct: 19 GLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGF-VYSCVEEVDAAMCARPHKV 76
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E I+ IFVGG+ + ++ ++ +F ++GNI E+ D
Sbjct: 77 DGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKTIEVVED 135
Query: 220 KSKSQRKNFCFITFE-HESV 238
+ +++ F F+TF+ H++V
Sbjct: 136 RQSGKKRGFAFLTFDDHDTV 155
Score = 95 (38.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG I+ + + D +G+ RGFAF+ F D ++++K
Sbjct: 107 GGIKEDTEEYNLRDYF-EYGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDK 157
Score = 73 (30.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF ++ + + + D + + F F+ E V + P
Sbjct: 15 LFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCARP 73
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ V+ K+A + +
Sbjct: 74 -HKVDGHVVEPKRAISRED 91
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 30 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 89
Query: 247 KQKINDKEVDVKKATPKPE 265
+ + ++K A K +
Sbjct: 90 YHNVGLSKCEIKVAMSKEQ 108
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 31 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 90
Query: 247 KQKINDKEVDVKKATPKPE 265
+ + ++K A K +
Sbjct: 91 YHNVGLSKCEIKVAMSKEQ 109
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 172 (65.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 43/166 (25%), Positives = 80/166 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIA 164
G+ + T++ L+ HF +YG++ + + + RSR F F+ + + + A S I
Sbjct: 16 GLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSARPHIL 75
Query: 165 EGNHV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+GN+V + IF+GGL +++++ ++ F+QFG + + E+ D
Sbjct: 76 DGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITD 135
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K +++ F F+ FE + IN +V+VKKA K E
Sbjct: 136 KETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQE 181
Score = 122 (48.0 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ D I E+ L++ FS++G +E + +D TG+ RGF F+ F+D +S +K
Sbjct: 98 AKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADK 157
Query: 651 ASV 653
A V
Sbjct: 158 AVV 160
Score = 87 (35.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 16/79 (20%), Positives = 40/79 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+FVGGL+ + D+ ++ HF Q+G + + + ++ + + F F+T+ +
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSAR 71
Query: 247 KQKINDKEVDVKKATPKPE 265
++ V++K+A + +
Sbjct: 72 PHILDGNNVELKRAVARED 90
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 174 (66.3 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 37/166 (22%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G + E+ D
Sbjct: 87 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F TF+ V ++ IN +V+KA + E
Sbjct: 147 RQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 192
Score = 98 (39.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+++ + + +D +G+ RGF F F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDK 168
Score = 97 (39.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ + V+ K+A + E
Sbjct: 83 PHSIDGRVVEPKRAVAREE 101
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 174 (66.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 107 GIVHKITEE-LKEHFS-------KYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA- 157
G+ + T++ L+EHF K+G + + + DP T RSRGF F+ + E ++ A
Sbjct: 19 GLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYS-CEEVDAAM 77
Query: 158 -----SVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNII 212
V+ + E ++ IFVGG+ + + ++ +F ++G I
Sbjct: 78 CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIE 137
Query: 213 ETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 138 TIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 190
Score = 114 (45.2 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 601 GIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
GI + E L+++F KYG+IE + + D +G+ RGFAF+ F D ++++K V+
Sbjct: 116 GIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 170
Score = 87 (35.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFA-------QFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
+F+GGLS E D+ ++ HF ++G + + + D + + F F+T+ E V
Sbjct: 15 LFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVD 74
Query: 240 IDLLKNPKQKINDKEVDVKKATPKPE 265
+ P K++ + V+ K+A + +
Sbjct: 75 AAMCARP-HKVDGRVVEPKRAVSRED 99
Score = 78 (32.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 446 IET-EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
IET E+ D+ +++ F F+TF+ V ++ IN +VKKA K E
Sbjct: 136 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 190
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 162 (62.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 41/159 (25%), Positives = 78/159 (49%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVE----DVIAEGNH 168
E L+ HF ++G + + + DPNT SR F F+++ E ++ A +V + I +
Sbjct: 28 ESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNVRPHKVNRIGKPKM 87
Query: 169 VINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
++ FVGG+ + ++ ++ +F Q+G I E+ D+ +++ F
Sbjct: 88 AVSREDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGF 147
Query: 229 CFITFE-HESVVIDLLKNPKQK-INDKEVDVKKATPKPE 265
F+T + H+S ID + KQ +N +V++A K E
Sbjct: 148 AFVTCDDHDS--IDKIVIQKQHTVNGHNYEVRRALSKQE 184
Score = 100 (40.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+ +F +YGEI + + +D + + RGFAF+ D +S++K ++
Sbjct: 109 GGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQ 164
Score = 71 (30.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GL+ E +E ++ HF Q+G +++ + D + + F F+ + V D N
Sbjct: 16 LFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKV-DAAVNV 74
Query: 247 K-QKIN 251
+ K+N
Sbjct: 75 RPHKVN 80
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 172 (65.6 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 37/166 (22%), Positives = 78/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TE+ L+ ++ ++G++ + + DP+ RSRGF F+ F ++ A SV
Sbjct: 27 GLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAARPHSV 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + + + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSRQE 192
Score = 106 (42.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F KYG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 117 GGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
Score = 94 (38.1 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGL ++ ++ ++ Q+G + + + D S + + F F+TF + V +
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
++ K VD K+A + E
Sbjct: 83 PHSVDGKVVDPKRAVAREE 101
Score = 54 (24.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D S + + F F+TF + V + ++ K VD K+A + E
Sbjct: 55 DPSNKRSRGFGFVTFSSVAEVDAAMAARPHSVDGKVVDPKRAVAREE 101
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 378 RSSYREWGHVADNLLLCD 395
R+ Y++WG + D ++L D
Sbjct: 38 RNYYQQWGKLTDCVVLRD 55
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 169 (64.5 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 41/156 (26%), Positives = 71/156 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA-EGNHV----- 169
L+ HF +G + + + +P T RSR F F+ + + E + A A +GN V
Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 82
Query: 170 INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
++ +FVGGL ++ + ++ HF+QFG + + E+ DK +++ F
Sbjct: 83 VSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFG 142
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F+ F+ I V+VKKA PK +
Sbjct: 143 FVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 111 (44.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ + E +L EHFS++G +E + +D +G+ RGF F+ F+ ++ +K
Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 154
Query: 651 ASV 653
A+V
Sbjct: 155 AAV 157
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGL+ + + ++ HF FG + + + + + + F F+T+ + E + +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ V++K+A + +
Sbjct: 69 P-HAVDGNTVELKRAVSRED 87
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/163 (24%), Positives = 76/163 (46%)
Query: 109 VHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGN 167
V + L+ +F ++G + + + + RSR F F+ + +E + A + + +G
Sbjct: 17 VQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHVVDGK 76
Query: 168 HV-----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
+V + IFVGGL +++++++ F+QFG I ++E+ DK
Sbjct: 77 NVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDT 136
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ F F+ FE + IN +V+VKKA K E
Sbjct: 137 GKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQE 179
Score = 121 (47.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 592 AKNKMVSHPGIVDKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
AK K + G+ D I E +L E FS++G IE + +D +TG+ RGF F+ F+D +S +K
Sbjct: 96 AKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADK 155
Query: 651 ASV 653
A V
Sbjct: 156 AVV 158
Score = 94 (38.1 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE-HESVVIDLLKN 245
+FVGGL+ + ++ ++++F QFGN+ + + + + + F F+T+ E +
Sbjct: 10 LFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAAR 69
Query: 246 PKQKINDKEVDVKKATPKPE 265
P ++ K V+VK+A + +
Sbjct: 70 P-HVVDGKNVEVKRAVARED 88
Score = 64 (27.6 bits), Expect = 0.00095, Sum P(2) = 0.00094
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 431 DMMHMEVTEAVPM-EIIE-TEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
D+ ++TE +IE +E+ DK +++ F F+ FE + IN +
Sbjct: 109 DIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHK 168
Query: 489 VDVKKATPKPE 499
V+VKKA K E
Sbjct: 169 VEVKKALTKQE 179
Score = 37 (18.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 458 QRKN-FCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
QR F F+T+ E + P ++ K V+VK+A + +
Sbjct: 46 QRSRCFGFVTYSTSEEADAAMAARP-HVVDGKNVEVKRAVARED 88
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 164 (62.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 43/162 (26%), Positives = 76/162 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ HF ++ + + DPNT RSRG F + E ++ A
Sbjct: 25 GLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNARPHKV 84
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
V++ IF+ G+ + ++ ++ +F Q+ I E+ D+ ++
Sbjct: 85 DGRVVSREDSQRPGAHLTVK-IFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKK 143
Query: 226 KNFCFITF-EHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
++F F+TF EH+SV D + K +N +V+KA K E
Sbjct: 144 RDFAFVTFDEHDSV--DKIFIQKYHTVNGHNCEVRKALSKQE 183
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/111 (27%), Positives = 55/111 (49%)
Query: 134 DPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGNHVINNXXXXXXXXXXXXXXI 187
DPNT RSRGF F+ + E ++ A V+ + E ++ I
Sbjct: 3 DPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 62
Query: 188 FVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE-HES 237
FVGG+ + ++ ++ +F Q+G I E+ D+ +++ F F+TF+ H+S
Sbjct: 63 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 113
Score = 105 (42.0 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 647
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S
Sbjct: 65 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 113
Score = 105 (42.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTES 153
G + + TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S
Sbjct: 65 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 113
Score = 41 (19.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 219 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 3 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 49
Score = 41 (19.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 499
D + + + F F+T+ V D N + K++ + V+ K+A + +
Sbjct: 3 DPNTKRSRGFGFVTYATVEEV-DAAMNARPHKVDGRVVEPKRAVSRED 49
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 88 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Score = 146 (56.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 25/43 (58%), Positives = 38/43 (88%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 92 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 23/75 (30%), Positives = 47/75 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ ES +D + +
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 138
Query: 247 KQ-KINDKEVDVKKA 260
K+ K+N K +D K+A
Sbjct: 139 KEHKLNGKVIDPKRA 153
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 41/167 (24%), Positives = 78/167 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVF---KDTESLEKA---SV 159
G+ K T+E L+ H + G + + + DPNT SRGF F + +D +++ A +
Sbjct: 20 GLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNARPHKM 79
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHF-AQFGNIIETEMPY 218
+ + E ++ IFVGG+ + ++ +K +F Q+ I E+
Sbjct: 80 DGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMT 139
Query: 219 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
D+ +++ F F+TF+ V ++ +N + +V+KA K E
Sbjct: 140 DRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRKALSKQE 186
Score = 95 (38.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 601 GIVDKITEE--LKEHF-SKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE LK++F +Y +IE + + +D +G+ RGFAF+ F D + ++K ++
Sbjct: 110 GGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQ 166
Score = 84 (34.6 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GLS + DE +++H Q G +++ + D + + F F T+ V D + N
Sbjct: 16 LFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDV-DAVMNA 74
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 75 RPHKMDGRVVEPKRAVSRED 94
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 41/166 (24%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K G + + + DP T SRGF F+ E ++ A V
Sbjct: 42 GLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKV 101
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G ET +
Sbjct: 102 DGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKT-ET-IEGR 159
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ +++ F F+TF+ + V ++ IN +VK+A K E
Sbjct: 160 QAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQE 205
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF + G + + + D + F F+T E V +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 98 P-HKVDGRVVEPKRAVSRED 116
Score = 88 (36.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+ E T++ RGFAF+ F D ++++K V+
Sbjct: 132 GGIKEDTEEYNLRDYFEKYGKTE--TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 41/166 (24%), Positives = 79/166 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T++ L+EHF K G + + + DP T SRGF F+ E ++ A V
Sbjct: 42 GLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKV 101
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVGG+ + ++ ++ +F ++G ET +
Sbjct: 102 DGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKT-ET-IEGR 159
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+++ +++ F F+TF+ + V ++ IN +VK+A K E
Sbjct: 160 QAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQE 205
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D+ ++ HF + G + + + D + F F+T E V +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K++ + V+ K+A + +
Sbjct: 98 P-HKVDGRVVEPKRAVSRED 116
Score = 88 (36.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+ E T++ RGFAF+ F D ++++K V+
Sbjct: 132 GGIKEDTEEYNLRDYFEKYGKTE--TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQ 185
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/107 (33%), Positives = 54/107 (50%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+ L+++FSK+GEI + DP T RSRGF F+ F D ASV+ V+ + +H +++
Sbjct: 31 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP-----ASVDKVLGQPHHELDSK 85
Query: 174 XXXXXXXX---------XXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
IFVGGLS E++K +F QFG +
Sbjct: 86 TIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 132
Score = 116 (45.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + + ++ +F++FG I E + D + + + F F+TF + V +L P
Sbjct: 19 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 78
Query: 247 KQKINDKEVDVKKATPK 263
+++ K +D K A P+
Sbjct: 79 HHELDSKTIDPKVAFPR 95
Score = 114 (45.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+ L+++FSK+GEI + DP T RSRGF F+ F D S++K
Sbjct: 31 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 43/166 (25%), Positives = 75/166 (45%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ K T+E L+ HF ++G + + ++ DPN SRGF F+ + E L+ A V
Sbjct: 20 GLSFKTTDESLRSHFEQWGTLTDCVMR-DPNNKISRGFGFVTYTTVEELDAAMNARPHKV 78
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IFVG +K++ HF Q+G I E+ D
Sbjct: 79 DGGVVEPKRAVSREDSPRPGAHLTVKKIFVG-----VKEDTEGHHFEQYGKIEVIEIMTD 133
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ +N +V+KA E
Sbjct: 134 RGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSNQE 179
Score = 102 (41.0 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 613 HFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
HF +YG+IE + + +D +G+ RGFAF+ F D +S++ ++
Sbjct: 118 HFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQ 159
Score = 94 (38.1 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + DE +++HF Q+G + + M +K R F F+T+ +D N
Sbjct: 16 LFIGGLSFKTTDESLRSHFEQWGTLTDCVMRDPNNKISR-GFGFVTYTTVEE-LDAAMNA 73
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ V+ K+A + +
Sbjct: 74 RPHKVDGGVVEPKRAVSRED 93
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 40/168 (23%), Positives = 70/168 (41%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS------V 159
G+ + T E L+ HF + G + + DPNT SRGF F+ + E ++ A+ V
Sbjct: 34 GLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNARPHKV 93
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEE--IKAHFAQFGNIIETEMP 217
+ V+ V + EE ++ +F Q+G I E+
Sbjct: 94 DRVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDDNNTEEYHLRDYFEQYGKIEVIEIM 153
Query: 218 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 154 TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 201
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 604 DKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
D TEE L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K ++
Sbjct: 129 DNNTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 181
Score = 96 (38.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E +++HF Q G + + D + + F F+T+ V D N
Sbjct: 30 LFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEV-DAATNA 88
Query: 247 KQKINDKEVDVKKATPKPE 265
+ D+ V+ K+A + +
Sbjct: 89 RPHKVDRVVEPKRAVSRED 107
Score = 68 (29.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+E+IE + D+ +++ F F+TF+ V ++ +N +V+KA K E
Sbjct: 147 IEVIE--IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 201
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 171 (65.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 45/150 (30%), Positives = 77/150 (51%)
Query: 114 EELKEHFSKYGEI-ENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV-IN 171
E LK++FS +GE+ E++ +K+ +SRGF F+ F D +++ + + EG +V I
Sbjct: 120 EILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVILINHSIEGKNVEIR 179
Query: 172 NXXXXXXXXXX-XXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCF 230
+FVGGL + ++ +F++FG I E + +K+ + K F F
Sbjct: 180 RAIPKEEMTEEPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKNGTI-KGFGF 238
Query: 231 ITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
I F+ ESV +L + I K VD++ A
Sbjct: 239 ICFKDESVNEIILNEQQHIILGKRVDIRIA 268
Score = 110 (43.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK-SQRKNFCFITFEHESVVIDLLKN 245
IFVGGL +E +K +F+ FG + E+ + K S+ + F F+TF SV+ +++
Sbjct: 108 IFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVILI 167
Query: 246 PKQKINDKEVDVKKATPKPE 265
I K V++++A PK E
Sbjct: 168 -NHSIEGKNVEIRRAIPKEE 186
Score = 87 (35.7 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 591 EAKNKMVSHPGIVDKIT-EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 649
E K + + G+ IT ++ +FS++GEI L ++ N G +GF FI FKD ES+
Sbjct: 190 EPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICFKD-ESVN 247
Query: 650 K 650
+
Sbjct: 248 E 248
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 164 (62.8 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 44/168 (26%), Positives = 76/168 (45%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDT--ESLEKA------ 157
G+ +IT E L+ H ++G + + ++ DPNT SRGF FI E ++ A
Sbjct: 20 GLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAAMNARPH 79
Query: 158 SVEDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP 217
V+ + E ++ FVGG+ + ++ ++ +F Q+G I E+
Sbjct: 80 KVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 139
Query: 218 YDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
D +R +F F+TF+ V ++ +N +VKKA K E
Sbjct: 140 IDPGSGKR-SFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKKALSKQE 186
Score = 106 (42.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F +YG+IE + + DP +G+ R FAF+ F D +S++K ++
Sbjct: 112 GGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQ 166
Score = 95 (38.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV-IDLLKN 245
+F+GGLS E+ +E +++H Q+G + + + D + + F FIT +V +D N
Sbjct: 16 LFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAAMN 75
Query: 246 PK-QKINDKEVDVKKATPKPE 265
+ K++ + V+ K+A + +
Sbjct: 76 ARPHKVDGRVVEPKRAVSRED 96
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 163 (62.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 42/162 (25%), Positives = 74/162 (45%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ HF ++ + + DPNT RSRG F + E ++ A
Sbjct: 21 GLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNARPHKV 80
Query: 166 GNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
V++ V G+ + ++ ++ +F Q+ I E+ D+ ++
Sbjct: 81 DGRVVSREDSQRPGAHLTVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKK 140
Query: 226 KNFCFITF-EHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
++F F+TF EH+SV D + K +N +V+KA K E
Sbjct: 141 RDFAFVTFDEHDSV--DKIFIQKYHTVNGHNCEVRKALSKQE 180
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 164 (62.8 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 41/167 (24%), Positives = 83/167 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A S+
Sbjct: 15 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAARPHSI 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E + +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 75 DGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 134
Query: 220 KSKSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +S ++ F F+TF+ H+ V +L+ K N +V+KA + E
Sbjct: 135 R-QSGKRGFGFVTFDDHDPVDKIVLQKYHTK-NGHNAEVRKALSRQE 179
Score = 97 (39.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV-IDLLKN 245
+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF + V + +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR 70
Query: 246 PKQKINDKEVDVKKATPKPE 265
P I+ + V+ K+A + E
Sbjct: 71 P-HSIDGRVVEPKRAVAREE 89
Score = 93 (37.8 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F +YG+I+ + + +D +G+ RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDK 155
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 118 (46.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 39/161 (24%), Positives = 80/161 (49%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV---IAEGNHVI-- 170
L EHFS +G+I + + SD + G S+G+AF+ F++ + ++A +E++ + +G V
Sbjct: 114 LYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRA-IEEMNGKLLKGCKVFVG 170
Query: 171 -----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
+ +++ +M DE +K F+++G + ++ D S +
Sbjct: 171 RFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS-GKS 229
Query: 226 KNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K F F++F+ HE+ + + + IN + + V +A K E
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Score = 115 (45.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 36/146 (24%), Positives = 70/146 (47%)
Query: 98 AKNKMVS-HPGIVHK-ITEELK-EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 154
AK +M S + G +H +TE+L FS G + ++ + D T RS G+A++ F
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 EKA--SVEDVIAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
+KA ++ I +G + + +F+ L + ++ + HF+ FG I
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKI 124
Query: 212 IETEMPYDKSKSQRKNFCFITFEHES 237
+ +++ D S K + F+ F+++S
Sbjct: 125 LSSKVMSDDQGS--KGYAFVHFQNQS 148
Score = 97 (39.2 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D E LK+ FSKYG+ +V + +D ++G+S+GF F+ F E+ +KA VE++
Sbjct: 200 DMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA-VEEM 250
Score = 96 (38.9 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
E LK+ FSKYG+ +V + +D ++G+S+GF F+ F E+ +KA VE++
Sbjct: 204 ERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA-VEEM 250
Score = 77 (32.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L+ FS +G I V + + G+S+GF I F E KA E
Sbjct: 307 EKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 161 (61.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 39/140 (27%), Positives = 66/140 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ K T E L+ HF ++ + + DPNT RSRGF F+ + E ++ A V
Sbjct: 11 GLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKV 70
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E ++ I VGG+ + ++ ++ +F +G I E+ D
Sbjct: 71 DGSFVEPKRAVSREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTD 130
Query: 220 KSKSQRKNFCFITFE-HESV 238
+ S +K F F+TF+ H+SV
Sbjct: 131 RG-SGKKEFAFVTFDDHDSV 149
Score = 96 (38.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 595 KMVSHPGIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
K +S GI + TEE L+++F YG+IE + + +D +G+ FAF+ F D +S++K
Sbjct: 96 KEISVGGIKED-TEEHHLRDYFEHYGKIEVIEIMTDRGSGKKE-FAFVTFDDHDSVDKIV 153
Query: 653 VE 654
++
Sbjct: 154 IQ 155
Score = 86 (35.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS + +E +++HF Q+ + + D + + + F F+T+ V D N
Sbjct: 7 LFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEV-DAAMNA 65
Query: 247 K-QKINDKEVDVKKATPKPE 265
+ K++ V+ K+A + +
Sbjct: 66 RPHKVDGSFVEPKRAVSRED 85
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 162 (62.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 37/160 (23%), Positives = 73/160 (45%)
Query: 107 GIVHKITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+ L+EHF K+G + + + DP SRGF+F+ + E + V
Sbjct: 43 GLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCARPHKV 102
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ E ++ IFVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 103 VGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMED 162
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKK 259
+ +++ F F+TF++ V D + +N +VK+
Sbjct: 163 RQSGKKRGFAFVTFDNHDTV-DKVVQKYHTVNGHNCEVKE 201
Score = 110 (43.8 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+++F KYG+IE + + D +G+ RGFAF+ F + ++++K
Sbjct: 133 GGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDK 184
Score = 86 (35.3 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH-ESVVIDLLKN 245
+F+GGLS E D ++ HF ++G + + + D + + F F+T+ E V +
Sbjct: 39 LFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCAR 98
Query: 246 PKQKINDKEVDVKKATPKPE 265
P K+ V+ K+A + +
Sbjct: 99 P-HKVVGCVVEPKRAVSRED 117
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 160 (61.4 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLS E++K +F QFG + + + +DK+ ++ + F F+TFE+E VV + +
Sbjct: 51 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 110
Query: 247 KQKINDKEVDVKKATPKPEPF 267
+IN+K V+ KKA PK F
Sbjct: 111 FHEINNKMVECKKAQPKEVMF 131
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 157 (60.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 38/161 (23%), Positives = 71/161 (44%)
Query: 111 KITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIA 164
K E L+ HF ++G + N + DPNT RS GF F+ + E ++ A V++ +
Sbjct: 11 KTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNERPHKVDERVL 70
Query: 165 EGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
E ++ IFVG + + ++ ++ +F Q+G I + + +
Sbjct: 71 EPKRAVSREDSERTGTHLTVKKIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWK 122
Query: 225 RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
++ FCF TF+ V ++ + +V+K K E
Sbjct: 123 KEGFCFFTFDDHDSVDKIVIQKYHTVGGHTCEVRKPLSKQE 163
Score = 104 (41.7 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++HF Q+G + + + D + + F F+T+ V +
Sbjct: 2 LFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNER 61
Query: 247 KQKINDKEVDVKKATPKPE 265
K++++ ++ K+A + +
Sbjct: 62 PHKVDERVLEPKRAVSRED 80
Score = 70 (29.7 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G+V + TEE L+++F +YG+I+ K GF F F D +S++K ++
Sbjct: 96 GVVKEDTEEHHLRDYFEQYGKIQRQWKKE--------GFCFFTFDDHDSVDKIVIQ 143
Score = 51 (23.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 452 YDKSKSQ--RKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
Y K + Q ++ FCF TF+ V ++ + +V+K K E
Sbjct: 114 YGKIQRQWKKEGFCFFTFDDHDSVDKIVIQKYHTVGGHTCEVRKPLSKQE 163
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 131 (51.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 42/173 (24%), Positives = 84/173 (48%)
Query: 105 HPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
HP I +K L + FS +G+I + + +D N G+S+GF F+ F++ + ++A ++ +
Sbjct: 134 HPDIDNKA---LYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGM 189
Query: 163 IAEGNHVI-------NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETE 215
+ G + ++V ++ E DE+ + FA+FG I+
Sbjct: 190 LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSAS 249
Query: 216 MPYDKSKSQRKNFCFITFE-HESVV--IDLLKNPKQKINDKEVDVKKATPKPE 265
+ D + + K F F+ +E HE V ++ L + ++N +++ V +A K E
Sbjct: 250 LEKD-ADGKLKGFGFVNYEKHEDAVKAVEALND--SELNGEKLYVGRAQKKNE 299
Score = 102 (41.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 38/149 (25%), Positives = 69/149 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVI---AEGNHV-IN 171
L + FS G + ++ + D T S G+A++ F D E+ KA +E + +G I
Sbjct: 54 LYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA-IEQLNYTPIKGRLCRIM 112
Query: 172 NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFI 231
IF+ L P++ ++ + F+ FG+I+ +++ D++ + K F F+
Sbjct: 113 WSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFV 171
Query: 232 TFEHESVV---IDLLKNPKQKINDKEVDV 257
FE E ID L +N +E+ V
Sbjct: 172 HFEEEGAAKEAIDALNG--MLLNGQEIYV 198
Score = 84 (34.6 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L+E F+ YG I + + N G+S+GF F+ F E KA E
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITE 381
Score = 74 (31.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E+ +E F+K+G I + +L+ D + G+ +GF F+ ++ E KA
Sbjct: 233 EQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKA 275
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 156 (60.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLS E++K +F QFG + + + +DK+ ++ + F F+TFE E +V + +
Sbjct: 43 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 102
Query: 247 KQKINDKEVDVKKATPK 263
+IN+K V+ KKA PK
Sbjct: 103 FHEINNKMVECKKAQPK 119
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 118 (46.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 39/161 (24%), Positives = 80/161 (49%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV---IAEGNHVI-- 170
L EHFS +G+I + + SD + G S+G+AF+ F++ + ++A +E++ + +G V
Sbjct: 172 LYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRA-IEEMNGKLLKGCKVFVG 228
Query: 171 -----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
+ +++ +M DE +K F+++G + ++ D S +
Sbjct: 229 RFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS-GKS 287
Query: 226 KNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
K F F++F+ HE+ + + + IN + + V +A K E
Sbjct: 288 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
Score = 115 (45.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 36/146 (24%), Positives = 70/146 (47%)
Query: 98 AKNKMVS-HPGIVHK-ITEELK-EHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 154
AK +M S + G +H +TE+L FS G + ++ + D T RS G+A++ F
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 EKA--SVEDVIAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
+KA ++ I +G + + +F+ L + ++ + HF+ FG I
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKI 182
Query: 212 IETEMPYDKSKSQRKNFCFITFEHES 237
+ +++ D S K + F+ F+++S
Sbjct: 183 LSSKVMSDDQGS--KGYAFVHFQNQS 206
Score = 97 (39.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D E LK+ FSKYG+ +V + +D ++G+S+GF F+ F E+ +KA VE++
Sbjct: 258 DMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA-VEEM 308
Score = 96 (38.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
E LK+ FSKYG+ +V + +D ++G+S+GF F+ F E+ +KA VE++
Sbjct: 262 ERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA-VEEM 308
Score = 77 (32.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L+ FS +G I V + + G+S+GF I F E KA E
Sbjct: 365 EKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 409
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 109 (43.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D E LKE FSKYG+ +V + +DP TG+S+GF F+ F+ E KA VE++
Sbjct: 201 DMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA-VEEM 251
Score = 108 (43.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
E LKE FSKYG+ +V + +DP TG+S+GF F+ F+ E KA VE++
Sbjct: 205 ERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA-VEEM 251
Score = 107 (42.7 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 38/165 (23%), Positives = 76/165 (46%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H +TE L E FS G + ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G + I +F+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
S K + F+ FE + ++ +ND++V V + + E
Sbjct: 136 GS--KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 103 (41.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 37/160 (23%), Positives = 71/160 (44%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+AF+ F+ ++ ++A + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+++ +M DE +K F+++G + ++ D + + K
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSK 231
Query: 227 NFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F++FE HE + + + IN K V V +A K E
Sbjct: 232 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
Score = 79 (32.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Score = 62 (26.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+++ L + DE+++ F+ FG+I ++ + +S K F F+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFVCF 340
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 326 RTGPMVQATPPLAEVDVTGVIMILLGAKNHNSDENPTSRSHPSQNAIKLYLTRSSYRE 383
R P++QA P +TG+++ + ++ + E+P S + A+ + + +E
Sbjct: 561 RLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 618
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 160 (61.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M ++E++ F+Q+G++++ +P K
Sbjct: 170 GRWCDCKLPNSKQSQDEPLRSRK-VFVGRCTEDMTEDELREFFSQYGDVMDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + + L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQIAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 160 (61.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M ++E++ F+Q+G++++ +P K
Sbjct: 170 GRWCDCKLPNSKQSQDEPLRSRK-VFVGRCTEDMTEDELREFFSQYGDVMDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + + L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQIAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 162 (62.1 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 45/159 (28%), Positives = 74/159 (46%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
+ L+EHF K G + + + DP T SRGF F+ + E ++ A V+ + E
Sbjct: 46 DSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCAWLHKVDGRVVEPK 105
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
++ FVGG+ + ++ +K +F ++G I ETE + +S R+
Sbjct: 106 KAVSREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKI-ETE-GMENRQSGRRG 163
Query: 228 FCFITF-EHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F F +H+ I + K+ IN +VKKA K E
Sbjct: 164 FAFAIFGDHDVDKIVVQKH--HTINGHNCEVKKALSKLE 200
Score = 87 (35.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E D+ ++ HF + G + + + D + F F+T+ V +
Sbjct: 34 LFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCAW 93
Query: 247 KQKINDKEVDVKKATPKPE 265
K++ + V+ KKA + +
Sbjct: 94 LHKVDGRVVEPKKAVSRED 112
Score = 86 (35.3 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE LK++F KYG+IE +++ +GR RGFAF +F D + ++K V+
Sbjct: 128 GGIKEDTEEYNLKDYFEKYGKIETEGMENR-QSGR-RGFAFAIFGDHD-VDKIVVQ 180
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 163 (62.4 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 49/161 (30%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F D E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ FAQ+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELQQFFAQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 163 (62.4 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 49/161 (30%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F D E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ FAQ+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELQQFFAQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 160 (61.4 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 37/135 (27%), Positives = 66/135 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK-ASVEDVIA 164
G+ +IT+E L+ HF ++G + + + DPNT SRGF + D + V +
Sbjct: 20 GLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNSRPCKVGRRVL 79
Query: 165 EGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQ 224
E ++ IFVGG+ + ++ ++ +F Q+G I E D+ +
Sbjct: 80 EPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGK 139
Query: 225 RKNFCFITFE-HESV 238
++ F F+TF+ H+SV
Sbjct: 140 KRGFAFVTFDDHDSV 154
Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164
G + + TEE L+++F +YG+IE + +D +G+ RGFAF+ F D +S++K ++ A
Sbjct: 105 GGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHA 164
Query: 165 EGNH 168
H
Sbjct: 165 ANGH 168
Score = 112 (44.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVYF 658
G + + TEE L+++F +YG+IE + +D +G+ RGFAF+ F D +S++K ++ Y
Sbjct: 105 GGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK-YH 163
Query: 659 YSN 661
+N
Sbjct: 164 AAN 166
Score = 69 (29.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNF 228
+F+ GLS E+ DE ++ HF Q+G + + + D + + F
Sbjct: 16 LFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGF 57
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 160 (61.4 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/152 (26%), Positives = 72/152 (47%)
Query: 122 KYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGNHVINNXXX 175
K+G + + + DPNT SRGF F+ + E ++ A V++ + E ++
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 176 XXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE- 234
IFVGG+ + + ++ +F +G I E+ D+ +++F F+TF+
Sbjct: 62 QRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDA 121
Query: 235 HESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
H+SV D + K +N +V+KA K E
Sbjct: 122 HDSV--DKIVIQKYHTVNGHNCEVRKALLKQE 151
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/156 (23%), Positives = 75/156 (48%)
Query: 117 KEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGNHVI 170
+ HF + G + + ++ DPNT RSRGF F+ + E ++ A V+ + E N +
Sbjct: 17 RSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDARVVEPNRAV 76
Query: 171 NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCF 230
+ FV G+ + ++ ++ ++ Q+G I E+ D+ ++++F F
Sbjct: 77 SREDSQRPG--------FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAF 128
Query: 231 ITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEP 266
+TF H+ + +++ ++ +V+KA K P
Sbjct: 129 VTF-HDHDLDEIVLQKYHNVHGYNCEVRKALSKQSP 163
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 120 (47.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 35/149 (23%), Positives = 70/149 (46%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASV--------EDVIAEGN 167
L + F+ +G I + + D N G S+G+ F+ ++ E+ +A E + G+
Sbjct: 165 LHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 168 HVIN-NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
H+ + I+V ++PE+ D+E + F ++G++ + + D+ + +
Sbjct: 224 HIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSR 283
Query: 227 NFCFITF-EHESVVIDLLKNPKQKINDKE 254
F F+ F HE D K Q++N+KE
Sbjct: 284 GFGFVNFTSHE----DASK-AVQELNEKE 307
Score = 116 (45.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 39/159 (24%), Positives = 73/159 (45%)
Query: 112 ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE--DVIAEGNH 168
+TE L E FS+ G + ++ + D T RS G+A++ + T EKA E + +G
Sbjct: 72 VTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRP 131
Query: 169 V-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
I +F+ L + ++ + FA FGNI+ ++ D++ + K
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNS-KG 190
Query: 228 FCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
+ F+ +E + +K+ +N+K+V V PK +
Sbjct: 191 YGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKD 229
Score = 99 (39.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 599 HPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
+P + D +E + F KYG++ + +L D TG+SRGF F+ F E KA E
Sbjct: 250 NPEVTD---DEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
EE + SK E E KS G+S+GF F+ F + + KA E
Sbjct: 406 EEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAE 452
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 159 (61.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/161 (22%), Positives = 76/161 (47%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE L++++ ++GE+ + + D + RSRG F+ F ++ A S+
Sbjct: 15 GLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAARPHSI 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E I +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 75 DGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITD 134
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ +++ F F+TF+ V ++ IN +V+KA
Sbjct: 135 RQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
Score = 110 (43.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
G + + TEE L+E+F KYG+I+ + + +D +GR RGF F+ F D + ++K
Sbjct: 105 GGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDK 156
Score = 86 (35.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC-FITFEHESVVIDLLKN 245
+F+GGLS + +E ++ ++ Q+G + + + D + SQR C F+TF + V +
Sbjct: 11 LFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFA-SQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 246 PKQKINDKEVDVKKATPK 263
I+ + ++ ++A P+
Sbjct: 70 RPHSIDGRVLEPRRAIPR 87
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/166 (21%), Positives = 77/166 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + TEE LK ++ ++GE+ + + + +SRGF F+ F ++ A S+
Sbjct: 27 GLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAARPHSI 86
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + + ++ +FVGG+ + ++ ++ +F ++G I E+ D
Sbjct: 87 DGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITD 146
Query: 220 KSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ +++ F F+TF+ V ++ IN +V KA + E
Sbjct: 147 RQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQE 192
Score = 108 (43.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+E+F KYG+I+ + + +D +G+ RGF F+ F D + ++K ++
Sbjct: 117 GGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Score = 94 (38.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E +E +K ++ Q+G + + + + + + F F+TF + V +
Sbjct: 23 LFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPK 263
I+ + VD K+A +
Sbjct: 83 PHSIDGRVVDPKRAVSR 99
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 46/161 (28%), Positives = 78/161 (48%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M ++E++ F+Q+G++++ +P K
Sbjct: 170 GRWCDCKLPNSKQSQDEPLRSRK-VFVGRCTEDMTEDELREFFSQYGDVMDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + + L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQIAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 43 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMID 102
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ F Q+G +++ +P K
Sbjct: 103 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELQQFFCQYGEVVDVFIP----K 157
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 158 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 196
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 97 (39.2 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFE--HESVVIDLLK 244
+ + LS + +D+E+K F++FG ++ET +P K ++K F F+ F+ E+
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPL-KPDGKKKGFAFVQFKCVSEAEKARAAM 184
Query: 245 NPKQKINDKEVDVKKATPKPE 265
N K I D+ V+V T E
Sbjct: 185 NRKA-IRDRPVEVDWTTSNTE 204
Score = 88 (36.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ELK+ FSK+G + + P+ G+ +GFAF+ FK EKA
Sbjct: 138 DELKQIFSKFGTVLETRIPLKPD-GKKKGFAFVQFKCVSEAEKA 180
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH--ESVVIDLLK 244
+ + LS + +++++K F++FG ++E ++P K +++ F F+ F+ E+
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPL-KPDGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 245 NPKQKINDKEVDVKKATPK 263
N K KI D++V V A K
Sbjct: 297 NGK-KIKDRQVAVDWAIAK 314
Score = 85 (35.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D E L+E ++GE+ V + +P+TG S+G AF FK E+ EK
Sbjct: 449 DSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEK 495
Score = 79 (32.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++LK+ FS++G + + P+ G+ RGFAF++FK KA
Sbjct: 250 DDLKQIFSEFGTVLEAKIPLKPD-GKKRGFAFVLFKRMPEAGKA 292
Score = 60 (26.2 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 160
E L E FS+ G ++N + D + RGF ++ F + ++A E
Sbjct: 18 EHLAEIFSEIGPLKNCFVVCDKEK-KCRGFGYVTFSMEDDAQRALKE 63
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 109 (43.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 39/165 (23%), Positives = 76/165 (46%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H ITE L E FS G + ++ + D T RS G+A++ F+ E+A ++
Sbjct: 17 GDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 76
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G + I +F+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 77 VVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 136
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
S K + F+ FE + ++ +ND++V V + + E
Sbjct: 137 GS--KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 179
Score = 102 (41.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D + LKE F KYG+ +V + +DP TG+SRGF F+ ++ E KA VE++
Sbjct: 202 DMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKA-VEEM 252
Score = 79 (32.9 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTE 353
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 39/159 (24%), Positives = 71/159 (44%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SVEDVIAEGN 167
+ L+EHF ++ + + + DP T RSR F F+ + + ++ A V+ + E
Sbjct: 27 DSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAAMCARPHKVDGCVVEPK 85
Query: 168 HVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETE-MPYDKSKSQRK 226
IF+GG+ + ++ ++ +F ++G I E M D+ +++
Sbjct: 86 RPFREDSVKPVVCLLAKK-IFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKR 144
Query: 227 NFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ IN DVKKA K E
Sbjct: 145 GFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKKAPSKQE 183
Score = 106 (42.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTL-KSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F KYG+IE + + + D +G RGFAF+ F D +++K V+
Sbjct: 107 GGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQ 163
Score = 71 (30.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF 233
+F+GGLS E D+ ++ HF Q+ + + ++K R F F+T+
Sbjct: 15 LFIGGLSFETSDDSLREHFEQWDMLTHCVVMDPQTKRSRV-FGFVTY 60
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LK++FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M EE++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTAEELQQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 149 (57.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 35/140 (25%), Positives = 65/140 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G++ K T E L+ HF K+G + + DPNT RSR F+ + E ++ A +
Sbjct: 29 GLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNARPQKM 88
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + + ++ IF GG+ + ++ ++ +F +G I E+ D
Sbjct: 89 DGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMIEIMTD 148
Query: 220 KSKSQRKNFCFITFE-HESV 238
+S S +K F + + H+SV
Sbjct: 149 RS-SGKKEFALVPLDDHDSV 167
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 111 (44.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 37/151 (24%), Positives = 69/151 (45%)
Query: 112 ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNH 168
+TE L E FS G++ ++ + D T RS G+A++ + DT E+A + + +G
Sbjct: 53 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKP 112
Query: 169 V-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
I +F+ L + ++ + FA FGNI+ ++ D+ K
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKG 171
Query: 228 FCFITFEHESVVIDLLKNPK-QKINDKEVDV 257
+ F+ +E + +K+ +NDK+V V
Sbjct: 172 YGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202
Score = 100 (40.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
EE ++ F K+GEI + TL D + G+SRGF F+ F ES + A+VE++
Sbjct: 237 EEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQ-AAVEEM 283
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 156 (60.0 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 41/160 (25%), Positives = 73/160 (45%)
Query: 113 TEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHV- 169
TEE L ++ ++G + + L DP + +SR F FI F L+ A + +G V
Sbjct: 33 TEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVM 92
Query: 170 ----INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
+ +FVGG++ +MK+ ++ +F ++G I E+ D ++
Sbjct: 93 PKRAVPREDHGKLGALITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKK 152
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ F FITF+ V ++ IN +V+KA + E
Sbjct: 153 RGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKALSRQE 192
Score = 119 (46.9 bits), Expect = 0.00042, P = 0.00042
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 112 ITEELKEH-----FSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166
ITE++KEH F KYG+I + + +D +G+ RGF FI F D + ++K ++ +
Sbjct: 119 ITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDK-----IVLQK 173
Query: 167 NHVIN 171
NH IN
Sbjct: 174 NHTIN 178
Score = 108 (43.1 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 603 VDKITEELKEH-----FSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
V ITE++KEH F KYG+I + + +D +G+ RGF FI F D + ++K
Sbjct: 116 VGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDK 168
Score = 84 (34.6 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+G LS E +E + ++ Q+G + + + D + + + F FITF + + +
Sbjct: 23 LFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAAR 82
Query: 247 KQKINDKEVDVKKATPKPE 265
I+ K V K+A P+ +
Sbjct: 83 PHFIDGKMVMPKRAVPRED 101
Score = 47 (21.6 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 381 YREWGHVADNLLLCD 395
YR+WG++ D +L+ D
Sbjct: 41 YRQWGYLTDCVLIRD 55
Score = 43 (20.2 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 453 DKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
D + + + F FITF + + + I+ K V K+A P+ +
Sbjct: 55 DPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPRED 101
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
D ++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 92 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 138
Score = 152 (58.6 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 26/43 (60%), Positives = 37/43 (86%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 156
++LK++F+K+GE+ + T+K DPNTGRSRGF FI+FKD S+EK
Sbjct: 96 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 138
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G+ + T+E L+ H S + +DPNT SRGF F+ + E ++ A V
Sbjct: 19 GLSFETTDESLRSHCSHSPSC----VMTDPNTKCSRGFRFVTYATVEEVDAAMNARPHKV 74
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + E ++ IF GG+ + ++ ++ +F + G I E+ D
Sbjct: 75 DRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTD 134
Query: 220 KSKSQRKNFCFITFE-HESV 238
S +++ F F+TF+ H+SV
Sbjct: 135 PSSGKKRGFAFVTFDDHDSV 154
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 107 GIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164
G + + TEE L+++F K G+IE + + +DP++G+ RGFAF+ F D +S++K ++
Sbjct: 105 GGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHT 164
Query: 165 EGNH 168
H
Sbjct: 165 VNGH 168
Score = 120 (47.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 22/56 (39%), Positives = 40/56 (71%)
Query: 601 GIVDKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
G + + TEE L+++F K G+IE + + +DP++G+ RGFAF+ F D +S++K ++
Sbjct: 105 GGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 160
Score = 73 (30.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+GGLS E DE +++H + + + T+ P K + F F+T+ V D N
Sbjct: 15 LFIGGLSFETTDESLRSHCSHSPSCVMTD-PNTKCS---RGFRFVTYATVEEV-DAAMNA 69
Query: 247 K-QKINDKEVDVKKATPK 263
+ K++ + V+ K+ +
Sbjct: 70 RPHKVDRRVVEPKRGVSR 87
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 46/161 (28%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LK++FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELRQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 263
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 124 (48.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 50/204 (24%), Positives = 88/204 (43%)
Query: 70 GKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIVHKITEELKEHFSKYGEIENV 129
GKP+ V SH D +R + KN S I HK L + FS +G I +
Sbjct: 104 GKPIRVMYSHR----DPSVRRSGAGNIFIKNLDES---IDHKA---LHDTFSSFGNIVSC 153
Query: 130 TLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHV-----INNXXXXXXXXXX 182
+ D ++G+S+G+ F+ + + ES +KA + ++ V +
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 183 XXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
++V L+ D+++K F ++G I + D + + K F F+ FE+
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARA 271
Query: 243 LKNPK-QKINDKEVDVKKATPKPE 265
+++ K +DKE V +A K E
Sbjct: 272 VESLNGHKFDDKEWYVGRAQKKSE 295
Score = 95 (38.5 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 36/151 (23%), Positives = 67/151 (44%)
Query: 112 ITE-ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE-DVIA-EGNH 168
+T+ +L + F + G + V + D T RS G+ ++ F + + +A E + I G
Sbjct: 47 VTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKP 106
Query: 169 V-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ + IF+ L + + + F+ FGNI+ ++ D S Q K
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSS-GQSKG 165
Query: 228 FCFITFEHE-SVVIDLLKNPKQKINDKEVDV 257
+ F+ + +E S + K +NDK+V V
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 83 (34.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 578 FDQNLRTHYFYIVEAKNKMVSH--PGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSR 635
++QNL+ ++ N V + P I D E+LKE FS +G + + + DPN G S+
Sbjct: 304 YEQNLKEAADKF-QSSNLYVKNLDPSISD---EKLKEIFSPFGTVTSSKVMRDPN-GTSK 358
Query: 636 GFAFIVFKDTESLEKA 651
G F+ F E +A
Sbjct: 359 GSGFVAFATPEEATEA 374
Score = 79 (32.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
++LK F +YG+I + + D G+S+GF F+ F++ + +A VE +
Sbjct: 229 DDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARA-VESL 275
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 156 (60.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELRQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 134 (52.2 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 29/127 (22%), Positives = 58/127 (45%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA------SV 159
G++ K T E L+ HF K+G + + DPNT RSR F+ + E ++ A +
Sbjct: 39 GLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNARPQKM 98
Query: 160 EDVIAEGNHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYD 219
+ + + ++ IF GG+ + ++ ++ +F +G I E+ D
Sbjct: 99 DGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMIEIMTD 158
Query: 220 KSKSQRK 226
+S +++
Sbjct: 159 RSSGKKE 165
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 151 (58.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 40/155 (25%), Positives = 69/155 (44%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVIN---- 171
L HF ++G + + + DPNT RSRGF F+ + E ++ A G +
Sbjct: 32 LTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVGGRAVEPKRA 91
Query: 172 -NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCF 230
+ IFVGG+ + ++ ++ + Q G TE+ D+ +R +F F
Sbjct: 92 GSKDSQRPGAHLTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGKR-DFAF 150
Query: 231 ITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+TF++ I + K +N +V+KA K E
Sbjct: 151 VTFDNSVDKIVIQKY--STVNGHNCEVRKALSKQE 183
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 109 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMID 168
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ F Q+G +++ +P K
Sbjct: 169 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELQQFFCQYGEVVDVFIP----K 223
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 224 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 262
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LK++FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M EE++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTAEELQQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 151 (58.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 42/140 (30%), Positives = 69/140 (49%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LK++FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M EE++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTAEELQQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDL 242
R F F+TF + V L
Sbjct: 225 PFRA-FAFVTFADDKVAQSL 243
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 118 (46.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 44/165 (26%), Positives = 78/165 (47%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H +TE L E FS G I ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G V I IF+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S K + F+ FE HE+ + K +ND++V V + + E
Sbjct: 136 GS--KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 109 (43.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 41/162 (25%), Positives = 73/162 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+ F+ F+ E+ E+A + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+++ +M DE++K F ++G + + D S + K
Sbjct: 173 FKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSK 231
Query: 227 NFCFITFE-HESV--VIDLLKNPKQKINDKEVDVKKATPKPE 265
F F++FE HE +D + N K+ +N K+V V +A K E
Sbjct: 232 GFGFVSFERHEDAQRAVDEM-NGKE-MNGKQVYVGRAQKKGE 271
Score = 87 (35.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D E+LKE F KYG ++ + +D ++G+S+GF F+ F+ E ++A
Sbjct: 201 DMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Score = 77 (32.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 109 (43.4 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 38/165 (23%), Positives = 76/165 (46%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H +TE L E FS G + ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G + I +F+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
S K + F+ FE + ++ +ND++V V + + E
Sbjct: 136 GS--KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 107 (42.7 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 38/160 (23%), Positives = 72/160 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+AF+ F+ E+ +KA + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+++ E+ DE +K F+QFG + ++ D + + K
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSK 231
Query: 227 NFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+++E HE + + ++I+ K + V +A K E
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 96 (38.9 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
E LKE FS++G+ +V + DPN G+S+GF F+ ++ E KA VE++
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA-VEEM 251
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
E LKE FS++G+ +V + DPN G+S+GF F+ ++ E KA VE++
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA-VEEM 251
Score = 79 (32.9 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 111 (44.1 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 43/165 (26%), Positives = 78/165 (47%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H+ +TE L E FS G I ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G V I IF+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S K + F+ FE E+ + K +ND++V V + + E
Sbjct: 136 GS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 105 (42.0 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 39/162 (24%), Positives = 74/162 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+ F+ F+ E+ E+A + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+++ +M D+++K F+++GN + + D++ R
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSR- 231
Query: 227 NFCFITFE-HESV--VIDLLKNPKQKINDKEVDVKKATPKPE 265
F F++FE HE +D + N K+ +N K + V +A K E
Sbjct: 232 GFGFVSFERHEDAQRAVDEM-NGKE-MNGKLIYVGRAQKKVE 271
Score = 94 (38.1 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D ++LK+ FSKYG ++ + +D N G+SRGF F+ F+ E ++A
Sbjct: 201 DMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRA 247
Score = 93 (37.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++LK+ FSKYG ++ + +D N G+SRGF F+ F+ E ++A
Sbjct: 205 DKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRA 247
Score = 81 (33.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E L++ FS +G I + + D GRS+GF F+ F E KA E
Sbjct: 308 ERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 110 (43.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 43/165 (26%), Positives = 78/165 (47%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H+ +TE L E FS G I ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G V I IF+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
S K + F+ FE E+ + K +ND++V V + + E
Sbjct: 136 GS--KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKE 178
Score = 105 (42.0 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 42/163 (25%), Positives = 71/163 (43%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+ F+ F+ E+ E+A + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETE-MPYDKSKSQR 225
+++ +M DE +K F ++G + + M D KS
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-- 230
Query: 226 KNFCFITFE-HESV--VIDLLKNPKQKINDKEVDVKKATPKPE 265
K F F++FE HE +D + N K +N K + V +A K E
Sbjct: 231 KGFGFVSFERHEDAQKAVDEM-NGKD-MNGKSMFVGRAQKKVE 271
Score = 95 (38.5 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D E LKE F KYG +V + +D N G+S+GF F+ F+ E +KA
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKA 247
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E L++ F +G I + + + GRS+GF F+ F E KA E
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 102 (41.0 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITF-EHESVVIDLLKN 245
IF+GGLS + E ++ F+QFG + + + D + + F F+T+ + +SV I
Sbjct: 34 IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRAR 93
Query: 246 PKQKINDKEVDVKKATPKPE 265
P I++K V+ K A P+ +
Sbjct: 94 P-HTIDNKIVETKHALPRQD 112
Score = 99 (39.9 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 610 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++E+FS++G + +V L D TGR R F F+ F D S EKA
Sbjct: 152 VREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKA 193
Score = 97 (39.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 187 IFVGGLSPEMKDEEI-KAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
IF+GGL E DE I + +F+QFG + ++ D+ +++ F F+ F S L
Sbjct: 138 IFLGGLK-EYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP 196
Query: 246 PKQKINDKEVDVKKATPKPE 265
K I V+VK++T K +
Sbjct: 197 RKHWILQTLVEVKRSTQKAD 216
Score = 85 (35.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE---KA---SVEDVIAEGN 167
E L+ FS++G + + + DP + SRGF F+ + D +S+E +A ++++ I E
Sbjct: 46 ETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTIDNKIVETK 105
Query: 168 HVI 170
H +
Sbjct: 106 HAL 108
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 109 (43.4 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 38/165 (23%), Positives = 76/165 (46%)
Query: 107 GIVHK-ITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDV 162
G +H +TE L E FS G + ++ + D T RS G+A++ F+ E+A ++
Sbjct: 16 GDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 75
Query: 163 IAEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKS 221
+ +G + I +F+ L + ++ + F+ FGNI+ ++ D++
Sbjct: 76 VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 135
Query: 222 KSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
S K + F+ FE + ++ +ND++V V + + E
Sbjct: 136 GS--KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 178
Score = 107 (42.7 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 38/160 (23%), Positives = 72/160 (45%)
Query: 116 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVIAEGNHVI--- 170
L + FS +G I + + D N G S+G+AF+ F+ E+ +KA + ++ V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 171 ----NNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+++ E+ DE +K F+QFG + ++ D + + K
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSK 231
Query: 227 NFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+++E HE + + ++I+ K + V +A K E
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 96 (38.9 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
E LKE FS++G+ +V + DPN G+S+GF F+ ++ E KA VE++
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA-VEEM 251
Score = 96 (38.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
E LKE FS++G+ +V + DPN G+S+GF F+ ++ E KA VE++
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA-VEEM 251
Score = 79 (32.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
E+L++ FS +G I + + + GRS+GF F+ F E KA E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/161 (28%), Positives = 75/161 (46%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LK++FS +GE+ V +K D TG S+GF F+ F + E+ K + + +
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMID 169
Query: 166 GNHV---INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSK 222
G + N +FVG + +M +E++ F Q+G +++ +P K
Sbjct: 170 GRWCDCKLPNSKQSPDEPLRSRK-VFVGRCTEDMTADELRQFFCQYGEVVDVFIP----K 224
Query: 223 SQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
R F F+TF + V L I V + A PK
Sbjct: 225 PFRA-FAFVTFADDQVAQSLC-GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 136 (52.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 35/122 (28%), Positives = 56/122 (45%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
EELK F GEIE+ L D TG+S G+ F+ + D + EKA + + + I
Sbjct: 81 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKV 140
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
++V GL M +E++ F+Q+G II + + D+ + FI
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIR 200
Query: 233 FE 234
F+
Sbjct: 201 FD 202
Score = 60 (26.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 610 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L + F +G + NV + D NT + +GF F+ + + A
Sbjct: 321 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 362
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 139 (54.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 46/160 (28%), Positives = 71/160 (44%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNX 173
+EL F K G I ++ L DP TG +RG+AF+ F E+ ++A V NH I +
Sbjct: 175 DELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEA----VKLYNNHEIRSG 230
Query: 174 XXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQF--G--NIIETEMPYDKSKSQRKNFC 229
+FVG + E+I F++ G ++I P DK K+ + FC
Sbjct: 231 KHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKN--RGFC 288
Query: 230 FITFEHESVVIDL---LKNPKQKINDKEVDVKKATPKPEP 266
F+ +E L + K K+ V V+ A P +P
Sbjct: 289 FLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDP 328
Score = 63 (27.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 590 VEAKNKMVSHPGIVDKITEELKEH-FSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESL 648
V AK K++ + + +TEE+ E FS++G++E V D +AFI F + +
Sbjct: 332 VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGA 383
Query: 649 EKASVE 654
KA E
Sbjct: 384 VKAMEE 389
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 103 (41.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
++L E FS++GEIE L D TGR +GFA V++ ES +KA E
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Score = 97 (39.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFV GL + K + + F Q+G I + + DK Q K + FI F+ S + LK P
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 247 KQKINDKEVDVKKATPKP 264
++KI + + A+ P
Sbjct: 190 QKKIGTRMTACQLASIGP 207
Score = 64 (27.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 498
EI + + DK Q K + FI F+ S + LK P++KI + + A+ P
Sbjct: 153 EIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGP 207
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
IFVGGLS E++K +F QFG + + +D+ K + F F+TFE E +V + +
Sbjct: 22 IFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCEIH 81
Query: 247 KQKINDKEVDVKKATPK 263
+IN+K V+ KKA PK
Sbjct: 82 FHEINNKMVECKKAQPK 98
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 102 (41.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 31/116 (26%), Positives = 50/116 (43%)
Query: 152 ESLEKASVEDVIAEG--NHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQF 208
E K V ++ E HV + N IFV GL + K E + F Q+
Sbjct: 104 EPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQY 163
Query: 209 GNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKP 264
G I + + +DK + K + FI ++ S + LK P++KI + + A+ P
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 593 KNKMVSHPGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS 652
K VS+ G + ++L FSK+GEIE L D TGR +GF V+K +ES ++A
Sbjct: 245 KKIYVSNVG-AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
Query: 653 VE 654
E
Sbjct: 304 EE 305
Score = 88 (36.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
TE L E F +YGEIE+ D +G+S+G+ FI++K A
Sbjct: 153 TETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
Score = 87 (35.7 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
I+V + E+ +++ F++FG I E + DK + K FC ++ L+ P
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 247 KQKINDKEVDVKKATPKPEP 266
+ + +KA P+P
Sbjct: 307 HKTFEGHILHCQKAIDGPKP 326
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 121 (47.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 105 HPGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV-- 162
HP I +K L + FS +G+I + + +D G+S+ F F+ ++ E+ E A++E+V
Sbjct: 148 HPAIDNKA---LHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAE-AAIENVNG 202
Query: 163 -------IAEGNHVIN-NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIET 214
+ G H+ + I+V + +E + F+ FG I
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSI 262
Query: 215 EMPYDKSKSQRKNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ D+ + K F F+ FE HES V + + ++IN +++ V +A K E
Sbjct: 263 YLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE 313
Score = 108 (43.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 43/175 (24%), Positives = 78/175 (44%)
Query: 98 AKNKMVSHPGIVHKITEE--LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 155
A+N + G ++ E L E FS G++ ++ + D + +S G+A++ + E E
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 156 KASVEDVI---AEGNHV-INNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNI 211
KA +E++ EG I IF+ L P + ++ + F+ FG I
Sbjct: 108 KA-IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 212 IETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPK-QKINDKEVDVKKATPKPE 265
+ ++ D+ Q K F F+ +E ++N +ND+EV V K K +
Sbjct: 167 LSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKD 220
Score = 91 (37.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
E ++ FS +G+I ++ L+ D + G+S+GF F+ F+D ES KA VE++
Sbjct: 247 ESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKA-VEEL 293
Score = 80 (33.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 607 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
+E+L+E F +G I + + D G+S+GF F+ F E KA E
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITE 395
Score = 56 (24.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 448 TEMPYDKSKSQR-KNFCFITFE-HESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
T + +K + + K F F+ FE HES V + + ++IN +++ V +A K E
Sbjct: 260 TSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE 313
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 146 (56.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 39/159 (24%), Positives = 70/159 (44%)
Query: 112 ITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKAS-----VEDVIAEG 166
I E L HF + G+ + + PNT SRGF F+ SL + V++ + E
Sbjct: 38 IDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNARPHKVDERVVEP 96
Query: 167 NHVINNXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
++ IFVGG+ ++ ++ +F Q+G I + E+ D+ +++
Sbjct: 97 KRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKR 155
Query: 227 NFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F TF+ V ++ +N +V++A K E
Sbjct: 156 GFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREALSKQE 194
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 135 (52.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA-SVEDVIAEGNHVINN 172
EELK F GEIE+ L D TG+S G+ F+ + + + EKA + + + I
Sbjct: 82 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKV 141
Query: 173 XXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
++V GL M +E++ F+QFG II + + D+ + FI
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIR 201
Query: 233 FEHESVVIDLLK 244
F+ + +K
Sbjct: 202 FDRRVEAEEAIK 213
Score = 59 (25.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 610 LKEHFSKYGEIENVTLKSDPNTGRSRGFAFI 640
L + F +G + NV + D NT + +GF F+
Sbjct: 321 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 351
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 35/155 (22%), Positives = 65/155 (41%)
Query: 113 TEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE-DVIAEGNHVIN 171
TE L+ FS YG++E + D TG+S+G+ F+ F + A E +G +
Sbjct: 88 TEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVT 147
Query: 172 ------NXXXXXXXXXXXXXXIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
N I+V + +M + + HF +G++ E + +DK +
Sbjct: 148 QLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKS 207
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 260
+ F ++ L +P + I+ K ++ K A
Sbjct: 208 RGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 100 (40.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 656
D + L HF YG++E L D TG+SRGFA V+K E + A + V
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229
Score = 97 (39.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+F+ GL+ + E +++ F+ +G++ E + DK + K + F+TF H + LK P
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 247 KQKINDK 253
+KI+ +
Sbjct: 137 SKKIDGR 143
WARNING: HSPs involving 291 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 661 567 0.00079 120 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 541
No. of states in DFA: 617 (66 KB)
Total size of DFA: 326 KB (2163 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.24u 0.08s 47.32t Elapsed: 00:00:29
Total cpu time: 47.29u 0.09s 47.38t Elapsed: 00:00:29
Start: Thu Aug 15 14:34:59 2013 End: Thu Aug 15 14:35:28 2013
WARNINGS ISSUED: 2