RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15852
(661 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 92.4 bits (228), Expect = 3e-22
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A V+ K
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 80
Query: 174 KIEAKK------AKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN 227
+ +++ A KIFVGG+ + ++ ++ +F Q+G I E+ D+ +++
Sbjct: 81 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 140
Query: 228 FCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
F F+TF+ V ++ +N +V+KA K E
Sbjct: 141 FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 178
Score = 57.3 bits (137), Expect = 4e-10
Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 11/170 (6%)
Query: 20 GGAPVSVKDDD-RKLFCPLSSYLELDYLQLWQ---YFDWVSSSFSENCLLEDSIGKPLTV 75
GG D+ R F + + ++ + +++ ++ ++
Sbjct: 12 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK 71
Query: 76 SCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIVHKIT--EELKEHFSKYGEIENVTLKS 133
+ R G + + T L+++F +YG+IE + + +
Sbjct: 72 VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 131
Query: 134 DPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKKIEAKKAKAK 183
D +G+ RGFAF+ F D +S++K + + H +N E +KA +K
Sbjct: 132 DRGSGKKRGFAFVTFDDHDSVDKI-----VIQKYHTVNGHNCEVRKALSK 176
Score = 50.4 bits (119), Expect = 1e-07
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 246 PKQKINDKEVDVKKATPKPEPF 267
K++ + V+ K+A + +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQ 89
Score = 44.2 bits (103), Expect = 1e-05
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 426 LVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKIN 485
+ T+ H+ +I E+ D+ +++ F F+TF+ V ++ +N
Sbjct: 105 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN 164
Query: 486 DKEVDVKKATPKPE 499
+V+KA K E
Sbjct: 165 GHNCEVRKALSKQE 178
Score = 43.5 bits (101), Expect = 2e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Score = 40.4 bits (93), Expect = 2e-04
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 571 CSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDP 629
+ K + GI + E L+++F +YG+IE + + +D
Sbjct: 74 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 133
Query: 630 NTGRSRGFAFIVFKDTESLEKA 651
+G+ RGFAF+ F D +S++K
Sbjct: 134 GSGKKRGFAFVTFDDHDSVDKI 155
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 74.2 bits (182), Expect = 6e-17
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
K+A K+ + V GL + ++++K +F+ FG ++ ++ D K F F+ F
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 61
Query: 238 VVIDLLKNPKQKINDKEVDVKKATPKPEP 266
+ ++ + I+ + D K K
Sbjct: 62 TQVKVMSQ-RHMIDGRWCDCKLPNSKQSQ 89
Score = 56.5 bits (136), Expect = 1e-10
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K TE+ LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K
Sbjct: 15 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV------MS 68
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
H+I+ + + K +K +
Sbjct: 69 QRHMIDGRWCDCKLPNSKQSQ 89
Score = 43.0 bits (101), Expect = 5e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++LKE+FS +GE+ V +K D TG S+GF F+ F + E+ K
Sbjct: 23 QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Score = 41.9 bits (98), Expect = 1e-05
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEP 500
E++ ++ D K F F+ F + ++ + I+ + D K K
Sbjct: 33 GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPNSKQSQ 89
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 73.1 bits (179), Expect = 9e-17
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
KIFVGGLSP+ +E+I+ +F FG + E+P D ++R+ FCFITF+ E V +++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 246 PKQKINDKEVDVKKA 260
+ + ++K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 58.4 bits (141), Expect = 1e-11
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ EE ++E+F +GE+E++ L D T + RGF FI FK+ E ++K + +
Sbjct: 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-----MEK 60
Query: 166 GNHVINNKKIEAKKA 180
H + K E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 44.2 bits (104), Expect = 2e-06
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E+++E+F +GE+E++ L D T + RGF FI FK+ E ++K
Sbjct: 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57
Score = 38.8 bits (90), Expect = 1e-04
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+ E+P D ++R+ FCFITF+ E V +++ + + ++K A
Sbjct: 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 68.5 bits (167), Expect = 3e-15
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + +++K +F++FG +++ + D + + F F+ F+ V ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 246 PKQKINDKEVDVKKA 260
+ K+N K +D K+A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 56.9 bits (137), Expect = 4e-11
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 6/75 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ T++ LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K + +
Sbjct: 6 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-----MDQ 60
Query: 166 GNHVINNKKIEAKKA 180
H +N K I+ K+A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 43.8 bits (103), Expect = 2e-06
Identities = 25/44 (56%), Positives = 38/44 (86%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++LK++FSK+GE+ + TLK DP TGRSRGF F++FK++ES++K
Sbjct: 14 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57
Score = 38.4 bits (89), Expect = 2e-04
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 443 MEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+++ + D + + F F+ F+ V ++ + K+N K +D K+A
Sbjct: 24 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 75
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 69.3 bits (169), Expect = 4e-15
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 176 EAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEH 235
K+ K + K+F+GGLS E +E ++ ++ Q+G + + + D + + + F F+TF
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
Query: 236 ESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+ V + I+ + V+ K+A + E
Sbjct: 72 MAEVDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 53.1 bits (127), Expect = 2e-09
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + TEE L+ ++ ++G++ + + DP + RSRGF F+ F ++ A +A
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA-----MAA 81
Query: 166 GNHVINNKKIEAKKAKAK 183
H I+ + +E K+A A+
Sbjct: 82 RPHSIDGRVVEPKRAVAR 99
Score = 38.9 bits (90), Expect = 2e-04
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ ++ ++G++ + + DP + RSRGF F+ F ++ A
Sbjct: 35 ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Score = 38.9 bits (90), Expect = 2e-04
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 499
+ D + + + F F+TF + V + I+ + V+ K+A + E
Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 101
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 65.8 bits (160), Expect = 3e-14
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS + E ++ +F QFG + E + D + + F F+TF ++ V +L
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 246 PKQKINDKEVDVKKA 260
+ +++ K +D K A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 59.6 bits (144), Expect = 5e-12
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+E+F ++GE++ + DP T RSRGF F+ F D ++K +A+
Sbjct: 7 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-----LAQ 61
Query: 166 GNHVINNKKIEAKKA 180
H +++K I+ K A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 46.5 bits (110), Expect = 2e-07
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+E+F ++GE++ + DP T RSRGF F+ F D ++K
Sbjct: 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 58
Score = 31.9 bits (72), Expect = 0.034
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
E+ E + D + + F F+TF ++ V +L + +++ K +D K A
Sbjct: 26 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 65.4 bits (159), Expect = 5e-14
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
K+F+GGLS E DE +++HF Q+G + + + D + + + F F+T+ V +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 246 PKQKINDKEVDVKKA 260
K++ + V+ K+A
Sbjct: 68 RPHKVDGRVVEPKRA 82
Score = 53.5 bits (128), Expect = 9e-10
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A +
Sbjct: 13 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA-----MNA 67
Query: 166 GNHVINNKKIEAKKAKA 182
H ++ + +E K+A +
Sbjct: 68 RPHKVDGRVVEPKRAVS 84
Score = 41.6 bits (97), Expect = 2e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L+ HF ++G + + + DPNT RSRGF F+ + E ++ A
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Score = 35.4 bits (81), Expect = 0.002
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 446 IETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
+ + D + + + F F+T+ V + K++ + V+ K+A
Sbjct: 34 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 82
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 64.3 bits (156), Expect = 2e-13
Identities = 10/96 (10%), Positives = 36/96 (37%)
Query: 170 INNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFC 229
+ + + +F L+ ++ +++ F+ G + + + D++ + K
Sbjct: 4 VREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIA 63
Query: 230 FITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPE 265
++ F V + Q++ + V+ + +
Sbjct: 64 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN 99
Score = 53.9 bits (129), Expect = 1e-09
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +I L++ FS G++ +V + SD N+ RS+G A++ F + + SV I
Sbjct: 25 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ-----SVPLAIGL 79
Query: 166 GNHVINNKKIEAKKAKAKSGKI 187
+ I + ++A+ ++
Sbjct: 80 TGQRLLGVPIIVQASQAEKNRL 101
Score = 41.2 bits (96), Expect = 3e-05
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+L++ FS G++ +V + SD N+ RS+G A++ F + +S+
Sbjct: 33 RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 75
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 62.1 bits (150), Expect = 8e-13
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
KIFVGGLS E++K +F QFG + + + +DK+ ++ + F F+TFE E +V + +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 246 PKQKINDKEVDVKKA 260
+IN+K V+ KKA
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 44.7 bits (105), Expect = 9e-07
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ T E +K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 6 GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-----CEI 60
Query: 166 GNHVINNKKIEAKKA 180
H INNK +E KKA
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 33.9 bits (77), Expect = 0.007
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E++K +F ++G++++ L D T R RGF F+ F+ + +EK
Sbjct: 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57
Score = 30.1 bits (67), Expect = 0.13
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
+ +DK+ ++ + F F+TFE E +V + + +IN+K V+ KKA
Sbjct: 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 62.4 bits (151), Expect = 9e-13
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
KIFVGGL D ++ +F FG+I E + D+ + + + F+T + K+
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 246 PKQKINDKEVDVKKATPKPEPFGVRGGRGG 275
P I+ ++ +V A +P ++ G
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRSLQTGFAI 101
Score = 45.1 bits (106), Expect = 1e-06
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + T+ L+++F +G+IE + +D TG+SRG+ F+ D + E+A +
Sbjct: 17 GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA-----CKD 71
Query: 166 GNHVINNKKIEAKKAKAKS 184
N +I+ +K A +
Sbjct: 72 PNPIIDGRKANVNLAYLGA 90
Score = 31.6 bits (71), Expect = 0.066
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ T+ L+++F +G+IE + +D TG+SRG+ F+ D + E+A
Sbjct: 17 GLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 62.3 bits (151), Expect = 1e-12
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN-FCFITFEHESVV 239
K + KI V + + EI+ F+ FG + +P + + F F+ F +
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 240 ---IDLLKNPKQKINDKEVDVKKATPKPE 265
+ L + + + + ++ A +
Sbjct: 65 KKAFNALCH-STHLYGRRLVLEWADSEVT 92
Score = 54.2 bits (130), Expect = 6e-10
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPN-TGRSRGFAFIVFKDTESLEKASVEDVIA 164
I + + ++E FS +GE++ V L TG RGF F+ F + +KA +
Sbjct: 15 NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA-FNAL-- 71
Query: 165 EGNHVINNKKIEAKKAKAKS 184
+ + +++ + A ++
Sbjct: 72 CHSTHLYGRRLVLEWADSEV 91
Score = 48.4 bits (115), Expect = 7e-08
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 608 EELKEHFSKYGEIENVTLKSDPN-TGRSRGFAFIVFKDTESLEKA 651
E++E FS +GE++ V L TG RGF F+ F + +KA
Sbjct: 23 REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 67
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 61.3 bits (148), Expect = 1e-12
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
KIFVGG+ + ++ ++ +F Q+G I E+ D+ +++ F F+TF+ V ++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 246 PKQKINDKEVDVKKA 260
+N +V+KA
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 44.3 bits (104), Expect = 1e-06
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
GI E L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K + +
Sbjct: 9 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI-----VIQ 63
Query: 166 GNHVINNKKIEAKKA 180
H +N E +KA
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 34.3 bits (78), Expect = 0.005
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKA 494
+ D+ +++ F F+TF+ V ++ +N +V+KA
Sbjct: 34 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 78
Score = 32.8 bits (74), Expect = 0.016
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L+++F +YG+IE + + +D +G+ RGFAF+ F D +S++K
Sbjct: 17 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 62.0 bits (150), Expect = 1e-12
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIET--EMPYDKSKSQRKNFCFITFEHESVV---I 240
++F+GG+ K EEI A+ + K + + F F+ +E
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 241 DLLKNPKQKINDKEVDVKKATPKPEP 266
L + ++ ++ V A P+ +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDV 88
Score = 42.0 bits (98), Expect = 2e-05
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIEN--VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVI 163
GI E + E +K E + S + ++RGFAF+ ++ + A +
Sbjct: 8 GIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR--RKL 65
Query: 164 AEGNHVINNKKIEAKKAKAKS 184
G + +I A+ +
Sbjct: 66 MPGRIQLWGHQIAVDWAEPEI 86
Score = 36.2 bits (83), Expect = 0.002
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 608 EELKEHFSKYGEIEN--VTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EE+ E +K E + S + ++RGFAF+ ++ + A
Sbjct: 16 EEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Score = 35.4 bits (81), Expect = 0.003
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVV---IDLLKNPKQKINDKEVDVKKATPKPEP 500
K + + F F+ +E L + ++ ++ V A P+ +
Sbjct: 35 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 88
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.5 bits (149), Expect = 2e-12
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
+K KS ++VG LS +E+I F++ G+I + M DK K FCF+ + +
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 238 VVIDLLKNP-KQKINDKEVDVKKATPKPEP 266
+ ++ +++D+ + E
Sbjct: 61 DAENAMRYINGTRLDDRIIRTDWDAGFKEG 90
Score = 42.2 bits (99), Expect = 1e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ TEE + E FSK G+I+ + + D + GF F+ + E A +
Sbjct: 14 NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA----MRYI 69
Query: 166 GNHVINNKKIEAKKAKAKS 184
++++ I
Sbjct: 70 NGTRLDDRIIRTDWDAGFK 88
Score = 39.5 bits (92), Expect = 1e-04
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E++ E FSK G+I+ + + D + GF F+ + E A
Sbjct: 22 EQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Score = 26.5 bits (58), Expect = 3.8
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 450 MPYDKSKSQRKNFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEP 500
M DK K FCF+ + + + ++ +++D+ + E
Sbjct: 39 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 90
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 59.7 bits (144), Expect = 8e-12
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
S +FVG + +M ++E++ F+Q+G++++ +P + F F+TF + + L
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFADDQIAQSLC 59
Query: 244 KNPKQKINDKEVDVKKATPKPEPFGVRGGRGGRGG 278
I V + A PK G G
Sbjct: 60 GED-LIIKGISVHISNAEPKHN-----SNSGPSSG 88
Score = 39.6 bits (92), Expect = 7e-05
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+TE+ L+E FS+YG++ +V R FAF+ F D + +
Sbjct: 12 RCTGDMTEDELREFFSQYGDVMDVF-----IPKPFRAFAFVTFADDQIAQSL------CG 60
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
+ +I + A+ K
Sbjct: 61 EDLIIKGISVHISNAEPKHNS 81
Score = 37.3 bits (86), Expect = 6e-04
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 436 EVTEAVPMEIIET--EMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKK 493
++TE E ++ + F F+TF + + L I V +
Sbjct: 16 DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGED-LIIKGISVHISN 74
Query: 494 ATPKPEPFGVRGGRGGRGG 512
A PK G G
Sbjct: 75 AEPKHN-----SNSGPSSG 88
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL+E FS+YG++ +V R FAF+ F D + +
Sbjct: 20 DELREFFSQYGDVMDVF-----IPKPFRAFAFVTFADDQIAQSL 58
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 59.3 bits (143), Expect = 1e-11
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESV 238
++K+ ++ V + +D +++ F QFG I++ E+ +++ S K F F+TFE+ +
Sbjct: 6 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSAD 63
Query: 239 VIDLLKN-PKQKINDKEVDVKKATPKP 264
+ + ++++V AT +
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNATARV 90
Score = 38.1 bits (88), Expect = 3e-04
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
I + + L++ F ++G+I +V + + S+GF F+ F+++ ++A
Sbjct: 18 NIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRA----REKL 71
Query: 166 GNHVINNKKIEAKKAKAK 183
V+ +KIE A A+
Sbjct: 72 HGTVVEGRKIEVNNATAR 89
Score = 28.5 bits (63), Expect = 0.65
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L++ F ++G+I +V + + S+GF F+ F+++ ++A
Sbjct: 26 PDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRA 67
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 58.5 bits (141), Expect = 2e-11
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
+ K+F+GGL + D+++K FG + + D + K + F + +V +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 244 KNP-KQKINDKEVDVKKATPKPE 265
++ DK++ V++A+ +
Sbjct: 61 AGLNGMQLGDKKLLVQRASVGAK 83
Score = 47.7 bits (113), Expect = 1e-07
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ + + ++ +KE + +G ++ L D TG S+G+AF + D ++A +
Sbjct: 8 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA----IAGL 63
Query: 166 GNHVINNKKIEAKKAKAKS 184
+ +KK+ ++A +
Sbjct: 64 NGMQLGDKKLLVQRASVGA 82
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++KE + +G ++ L D TG S+G+AF + D ++A
Sbjct: 16 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 59
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.5 bits (141), Expect = 2e-11
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+ ++VGGL ++ + + F Q G ++ T MP D+ Q + + F+ F E
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 243 LKN-PKQKINDKEVDVKKATPKPE 265
+K K+ K + V KA+ +
Sbjct: 68 IKIMDMIKLYGKPIRVNKASAHNK 91
Score = 45.8 bits (108), Expect = 6e-07
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ K++E L E F + G + N + D TG+ +G+ F+ F E + A +
Sbjct: 16 GLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA----IKIM 71
Query: 166 GNHVINNKKIEAKKAKAKSGKI 187
+ K I KA A + +
Sbjct: 72 DMIKLYGKPIRVNKASAHNKNL 93
Score = 35.8 bits (82), Expect = 0.002
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L E F + G + N + D TG+ +G+ F+ F E + A
Sbjct: 24 PLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Score = 26.5 bits (58), Expect = 3.1
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 444 EIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN-PKQKINDKEVDVKKATPKPE 499
++ T MP D+ Q + + F+ F E +K K+ K + V KA+ +
Sbjct: 35 PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 58.1 bits (140), Expect = 2e-11
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDK---SKSQRKNFCFITFEHESVVIDLL 243
+F+ L+ +E +K F++ G I + K F F+ ++ L
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 244 KNP-KQKINDKEVDVKKATPKPEP 266
K ++ +++V+ + +P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
Score = 48.5 bits (115), Expect = 6e-08
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 107 GIVHKITEE-LKEHFSKYGEIEN---VTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDV 162
+ TEE LK FSK G I++ K+ S GF F+ +K E +KA +
Sbjct: 5 NLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA----L 60
Query: 163 IAEGNHVINNKKIEAKKAKAKS 184
H ++ K+E + ++ +
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
Score = 39.2 bits (91), Expect = 1e-04
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 608 EELKEHFSKYGEIEN---VTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E LK FSK G I++ K+ S GF F+ +K E +KA
Sbjct: 13 ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 59
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 58.2 bits (140), Expect = 3e-11
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
SG++FV LS +E+++ F+ +G + E P D + K F F+TF +
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 244 KN-PKQKINDKEVDVKKATPKPEPFGVRGGRGGRGG 278
Q + + V +T K E G G
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKKE----ASQSGPSSG 99
Score = 38.2 bits (88), Expect = 4e-04
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ + +EE L++ FS YG + + D T + +GFAF+ F E KA
Sbjct: 15 NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA----YAEV 70
Query: 166 GNHVINNKKIEAKKAKAKS 184
V + + + K
Sbjct: 71 DGQVFQGRMLHVLPSTIKK 89
Score = 28.9 bits (64), Expect = 0.60
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E+L++ FS YG + + D T + +GFAF+ F E KA
Sbjct: 23 EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 57.4 bits (138), Expect = 4e-11
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
++VGGL+ E+ D+ + A F FG+I + ++P D + + F F+ FE + N
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 246 P-KQKINDKEVDVKKATPK 263
+ ++ + + V A P
Sbjct: 67 MNESELFGRTIRVNLAKPM 85
Score = 45.0 bits (106), Expect = 1e-06
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ ++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A +
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA----IDNM 67
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
+ + I AK K
Sbjct: 68 NESELFGRTIRVNLAKPMRIK 88
Score = 34.6 bits (79), Expect = 0.004
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 601 GIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G+ +++ ++ L F +G+I ++ + D T + RGFAF+ F+ E A
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 56.9 bits (137), Expect = 5e-11
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
++VG L P++ + + F+ G I+ + D + + ++ F+ + L
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 246 -PKQKINDKEVDVKKAT 261
I K V + +
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
Score = 49.5 bits (118), Expect = 2e-08
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +TE L E FS G I ++ + D T RS G+A++ F+ E+A +
Sbjct: 7 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA----LDTM 62
Query: 166 GNHVINNKKIEAKKAK 181
VI K + ++
Sbjct: 63 NFDVIKGKPVRIMWSQ 78
Score = 44.5 bits (105), Expect = 1e-06
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L E FS G I ++ + D T RS G+A++ F+ E+A
Sbjct: 15 AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 58
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.7 bits (136), Expect = 1e-10
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
F+G L ++ +E IK F + + K F + FE ++ L
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 76
Query: 246 PKQKINDKEVDVKKATPKPEPFGVRGGRGG 275
++ + +K + V A + G G
Sbjct: 77 NEESLGNKRIRVDVADQAQDK--DSGPSSG 104
Score = 37.8 bits (87), Expect = 5e-04
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ + +TEE +KE F + N R +GF + F+D +SL A ++
Sbjct: 22 NLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA-----LSL 76
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
+ NK+I A K
Sbjct: 77 NEESLGNKRIRVDVADQAQDK 97
Score = 27.4 bits (60), Expect = 2.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E +KE F + N R +GF + F+D +SL A
Sbjct: 30 ESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 55.4 bits (133), Expect = 2e-10
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKS-QRKNFCFITFEHESVV 239
K+ G IF+ L + ++ + F+ FGNI+ ++ D++ S F T E
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 240 IDLLKNPKQKINDKEVDVKKATPKPE 265
I+ + +ND++V V + + E
Sbjct: 65 IEKMNG--MLLNDRKVFVGRFKSRKE 88
Score = 37.7 bits (87), Expect = 4e-04
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ I + L + FS +G I + + D N S+G+ F+ F+ E+ E+A +
Sbjct: 15 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA----IEKM 68
Query: 166 GNHVINNKKIEAKKAKAKS 184
++N++K+ + K++
Sbjct: 69 NGMLLNDRKVFVGRFKSRK 87
Score = 28.8 bits (64), Expect = 0.57
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L + FS +G I + + D N S+G+ F+ F+ E+ E+A
Sbjct: 23 KALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 64
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 55.0 bits (132), Expect = 3e-10
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V L +M D E+ A F G I + D + F+ F E +K
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 246 P-KQKINDKEVDVKKATP 262
+ +K + V A P
Sbjct: 64 LNGITVRNKRLKVSYARP 81
Score = 43.1 bits (101), Expect = 5e-06
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
EL F G I + D TG S G+AF+ F ++A + + NK
Sbjct: 17 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA----IKVLNGITVRNK 72
Query: 174 KIEAKKAK 181
+++ A+
Sbjct: 73 RLKVSYAR 80
Score = 37.3 bits (86), Expect = 5e-04
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EL F G I + D TG S G+AF+ F ++A
Sbjct: 17 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 55.0 bits (132), Expect = 3e-10
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV--- 239
K ++V L + D+++ F ++G+I++ + DK + + F+ +
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 240 IDLLKNPKQKINDKEVDVKKA 260
I L N + + + V+ A
Sbjct: 65 ISALNNVIPEGGSQPLSVRLA 85
Score = 44.6 bits (105), Expect = 1e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ IT++ L F KYG I + D TGR RG AF+ + E ++A
Sbjct: 13 NLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Score = 44.6 bits (105), Expect = 1e-06
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L F KYG I + D TGR RG AF+ + E ++A
Sbjct: 21 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 54.8 bits (131), Expect = 4e-10
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 186 KIFVGGLSPEMKDEE-IKAHFAQFGNIIETEMPYDKSKSQR-KNFCFITFEHESVVIDLL 243
+I + LS E+ DE ++ F FG+I + +P + + F+ FE++ L
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 244 KNPKQKINDKEVDVKKATPKP 264
+ + + ++E+ V A KP
Sbjct: 66 QMNRSLLGNREISVSLADKKP 86
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.0 bits (129), Expect = 7e-10
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
GK+FVGGLS + ++ ++ F+++G I E + D+ + + F F+TFE+ D +
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 244 KN-PKQKINDKEVDVKKATPKPE 265
+ ++ +++ V +A +
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSD 87
Score = 36.6 bits (84), Expect = 9e-04
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ E+ L++ FSKYG+I V + D T RSRGF F+ F++ + + A ++A
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA----MMAM 67
Query: 166 GNHVINNKKIEAKKAKAKS 184
++ ++I +A S
Sbjct: 68 NGKSVDGRQIRVDQAGKSS 86
Score = 29.3 bits (65), Expect = 0.36
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 418 MTTTEHMVLVTG----TDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVV 473
M + E + V G T+ +E + +I E + D+ + + F F+TFE+
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 474 IDLLKN-PKQKINDKEVDVKKATPKPE 499
D + + ++ +++ V +A +
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 25.9 bits (56), Expect = 5.8
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L++ FSKYG+I V + D T RSRGF F+ F++ + + A
Sbjct: 20 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 53.4 bits (128), Expect = 8e-10
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 185 GKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK 244
GK+ V L + D +I+ FA+FG + + + YD+S + + FE ++ + +K
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSG-RSLGTADVHFERKADALKAMK 59
Query: 245 N-PKQKINDKEVDVKKAT 261
++ + ++++ T
Sbjct: 60 QYNGVPLDGRPMNIQLVT 77
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/77 (14%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +++ ++E F+++G ++ + +GRS G A + F+ KA +
Sbjct: 7 NLDFGVSDADIQELFAEFGTLKKAAVH-YDRSGRSLGTADVHFERKADALKA----MKQY 61
Query: 166 GNHVINNKKIEAKKAKA 182
++ + + + +
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
Score = 33.8 bits (77), Expect = 0.007
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++E F+++G ++ + +GRS G A + F+ KA
Sbjct: 15 ADIQELFAEFGTLKKAAVH-YDRSGRSLGTADVHFERKADALKA 57
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 53.6 bits (128), Expect = 9e-10
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKN-FCFITFE-HESVVIDLLK 244
IF+G L PE+ ++ + F+ FG I++T + + FI F ++ +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 245 NPKQKINDKEVDVKKATPKPE 265
Q + ++ + V A K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 46.7 bits (110), Expect = 2e-07
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVT-LKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIA 164
+ +I E+ L + FS +G I + DP+TG S+G+AFI F ++ + A + A
Sbjct: 5 NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA----IEA 60
Query: 165 EGNHVINNKKIEAKKAKAKSGK 186
+ N+ I A K K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
Score = 36.3 bits (83), Expect = 0.001
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 608 EELKEHFSKYGEIENVT-LKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L + FS +G I + DP+TG S+G+AFI F ++ + A
Sbjct: 13 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 57
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 53.7 bits (128), Expect = 1e-09
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+F+ LS + ++E + QFG++ + K F F + L
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 246 -------PKQKINDKEVDVKKATPKPE 265
K++ +++ V A + E
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 36.3 bits (83), Expect = 0.001
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA--SVEDVI 163
+ EE L E ++G+++ V + P+T S+G AF F E+ +K +
Sbjct: 15 NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEA 74
Query: 164 AEGNHVINNKKIEAKKAKAKS 184
G ++ ++++ A +
Sbjct: 75 EGGGLKLDGRQLKVDLAVTRD 95
Score = 29.0 bits (64), Expect = 0.50
Identities = 9/91 (9%), Positives = 21/91 (23%), Gaps = 17/91 (18%)
Query: 416 VPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVID 475
+ + E + + + K F F +
Sbjct: 16 LSFDSEEEALGEVLQQFGDL----------KYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 476 LLKN-------PKQKINDKEVDVKKATPKPE 499
L K++ +++ V A + E
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 27.9 bits (61), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E L E ++G+++ V + P+T S+G AF F E+ +K
Sbjct: 23 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 66
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.1 bits (127), Expect = 1e-09
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 180 AKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
A + ++V GL M +E++ F+Q+G II + + D+ + FI F+
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 240 IDLLKNPKQKINDKEVD 256
+ +K +N ++
Sbjct: 62 EEAIK----GLNGQKPS 74
Score = 40.0 bits (93), Expect = 6e-05
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
G+ +T++ L++ FS+YG I + D TG SRG FI F E+A
Sbjct: 13 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Score = 39.6 bits (92), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+EL++ FS+YG I + D TG SRG FI F E+A
Sbjct: 21 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 53.7 bits (129), Expect = 1e-09
Identities = 14/88 (15%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 181 KAKSGKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
++ + ++F+G L+ +K +++A F+++G I+ + F F+ + +E
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNA 63
Query: 240 IDLLKN-PKQKINDKEVDVKKATPKPEP 266
+ + I + +D+ A
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLAAEPKVN 91
Score = 46.0 bits (109), Expect = 5e-07
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+++ FSKYG+I ++ +GFAF+ + + + A V E +I +
Sbjct: 31 SDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNARAA----VAGEDGRMIAGQ 78
Query: 174 KIEAKKAKAKSGK 186
++ A
Sbjct: 79 VLDINLAAEPKVN 91
Score = 38.7 bits (90), Expect = 2e-04
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++ FSKYG+I ++ +GFAF+ + + + A
Sbjct: 31 SDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNARAA 66
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 53.3 bits (127), Expect = 2e-09
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ + + ++ + Q + F++E +
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
Query: 246 PKQKINDKEVDVKKATPK-PEPFGVRGGRGGRGG 278
++K+N +E V T + G+ G
Sbjct: 70 HRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
Score = 34.4 bits (78), Expect = 0.008
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
++ + EN N G+ G A + FK+ + K+ +N +
Sbjct: 23 MDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS-----ERLHRKKLNGR 77
Query: 174 KIEAKKAKAKSGK 186
+ + +
Sbjct: 78 EAFVHVVTLEDMR 90
Score = 28.3 bits (62), Expect = 1.2
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++ + EN N G+ G A + FK+ + K+
Sbjct: 23 MDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.7 bits (126), Expect = 2e-09
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
+ I V LS + ++ +++ F FG+I + DK+ Q K F FI+F +
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 244 KN-PKQKINDKEVDVKKATPK 263
+ ++V+ A P
Sbjct: 68 AGVSGFGYDHLILNVEWAKPS 88
Score = 40.4 bits (94), Expect = 4e-05
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ E L+E F +G I + L D TG+S+GFAFI F E +A +
Sbjct: 15 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA----IAGV 70
Query: 166 GNHVINNKKIEAKKAKAKS 184
++ + + AK +
Sbjct: 71 SGFGYDHLILNVEWAKPST 89
Score = 31.9 bits (72), Expect = 0.048
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E F +G I + L D TG+S+GFAFI F E +A
Sbjct: 23 TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 52.7 bits (126), Expect = 2e-09
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241
+ ++VG LS ++ + I F+Q G +M + + +CF+ F
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRDAAA 63
Query: 242 LLKN-PKQKINDKEVDVKKATPKPE 265
L +KI KEV V AT
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSS 88
Score = 38.5 bits (89), Expect = 2e-04
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +TE + + FS+ G ++ + ++ + + F+ F + A + A
Sbjct: 15 NLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAA----LAAM 68
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
I K+++ A S +
Sbjct: 69 NGRKILGKEVKVNWATTPSSQ 89
Score = 29.2 bits (65), Expect = 0.39
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ + FS+ G ++ + ++ + + F+ F + A
Sbjct: 23 VLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAA 64
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.8 bits (128), Expect = 3e-09
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V + + + +++ F ++G I ++ D+ Q + + F+ F+ S +
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103
Query: 246 P-KQKINDKEVDVKKATPKPEPFGVRGGRGGRGG 278
I +K + V A + G+ G G G
Sbjct: 104 LNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
Score = 29.9 bits (66), Expect = 0.45
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
I + E L++ F +YG IE+V + D T +SRG+ F+ F+ S ++A +
Sbjct: 49 YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA----IAGL 104
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
I NK+++ A + +
Sbjct: 105 NGFNILNKRLKVALAASGHQR 125
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.6 bits (123), Expect = 3e-09
Identities = 12/82 (14%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLK- 244
K+++G LSP + ++++ F + ++ + + F+ + ++ I ++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIET 56
Query: 245 -NPKQKINDKEVDVKKATPKPE 265
+ K +++ K ++V + K
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKL 78
Score = 37.0 bits (85), Expect = 5e-04
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +T + L++ F G+AF+ + D +A
Sbjct: 8 NLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIET---LS 58
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
G ++ K +E + +K +
Sbjct: 59 GKVELHGKIMEVDYSVSKKLR 79
Score = 28.5 bits (63), Expect = 0.54
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L++ F G+AF+ + D +A
Sbjct: 16 DDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRA 53
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.7 bits (123), Expect = 5e-09
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP--------YDKSKSQRKNFCFIT 232
+ + I+V GL+ + +++ F Q G + + DK + K ++
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 233 FEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264
+E ++ + ++ V A KP
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
Score = 37.1 bits (85), Expect = 0.001
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKS--------DPNTGRSRGFAFIVFKDTESLEKA 157
G+ +T + L + F + G ++ D TG+ +G A + ++D + + A
Sbjct: 15 GLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 74
Query: 158 SVEDVIAEGNHVINNKKIEAKKAKAK 183
V K++ A+ K
Sbjct: 75 ----VEWFDGKDFQGSKLKVSLARKK 96
Score = 29.0 bits (64), Expect = 0.54
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 608 EELKEHFSKYGEIENVTLKS--------DPNTGRSRGFAFIVFKDTESLEKA 651
++L + F + G ++ D TG+ +G A + ++D + + A
Sbjct: 23 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 74
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 51.9 bits (124), Expect = 6e-09
Identities = 8/83 (9%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
+ +++ L ++ EE+ F ++G I + + + + ++ +E +
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAC 63
Query: 244 KN-PKQKINDKEVDVKKATPKPE 265
+ + ++ + V
Sbjct: 64 DHLSGFNVCNRYLVVLYYNANRA 86
Score = 49.6 bits (118), Expect = 4e-08
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +KIT E + + F KYG I + NT +RG A++V++D + A
Sbjct: 14 NLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAKNA----CDHL 66
Query: 166 GNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP 217
+ N+ + A + + K+E++K ++G I T+ P
Sbjct: 67 SGFNVCNRYLVVLYYNANRAF---QKMDTKKKEEQLKLLKEKYG--INTDPP 113
Score = 38.8 bits (90), Expect = 3e-04
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EE+ + F KYG I + NT +RG A++V++D + A
Sbjct: 22 EEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAKNA 62
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 50.6 bits (120), Expect = 9e-09
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+++ P I+ + + + + F +I + ++
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 246 P-KQKINDKEVDVKKATP 262
KI + K + P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
Score = 34.0 bits (77), Expect = 0.006
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 5/76 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
T+ +++ + SR FA+I E V
Sbjct: 8 NFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY----CVEKL 63
Query: 166 GNHVINNKKIEAKKAK 181
I + K +
Sbjct: 64 NGLKIEGYTLVTKVSN 79
Score = 27.5 bits (60), Expect = 1.4
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEK 650
+++ + SR FA+I E
Sbjct: 16 RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 58
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 50.8 bits (121), Expect = 1e-08
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 167 NHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
+H++ + K A+ + LS + ++E+K F + + K
Sbjct: 1 SHMLEDPCTSKKVRAAR--TLLAKNLSFNITEDELKEVFEDALE-----IRLVSQDGKSK 53
Query: 227 NFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKPEPFGVRGGRG 274
+I F+ E+ L+ +I+ + V + K G RG
Sbjct: 54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK------GGTRG 96
Score = 37.7 bits (87), Expect = 5e-04
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ ITE+ LKE F EI V G+S+G A+I FK EK + +
Sbjct: 23 NLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKN----LEEK 73
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
I+ + + K G
Sbjct: 74 QGAEIDGRSVSLYYTGEKGGT 94
Score = 29.2 bits (65), Expect = 0.45
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ELKE F EI V G+S+G A+I FK EK
Sbjct: 31 DELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKN 69
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 49.7 bits (118), Expect = 2e-08
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 179 KAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESV 238
K K+ +++ G + ++IK G ++ +M K K F+ F+
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK-AFKGSIFVVFDSIES 59
Query: 239 VIDLLKNPKQKINDKEVDVKKA 260
++ P QK + ++ +
Sbjct: 60 AKKFVETPGQKYKETDLLILFK 81
Score = 28.2 bits (62), Expect = 0.81
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 97 EAKNKMVSHPGIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLE 155
+ KN+ V G T + +KE G++ N+ +G F+VF ES +
Sbjct: 3 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAK 61
Query: 156 KASVEDVIAEGNHVINNKKIEAKKAK 181
K + +
Sbjct: 62 KF-----VETPGQKYKETDLLILFKD 82
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.1 bits (119), Expect = 2e-08
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
++K + +F+ L E D+++ F FGN++ ++ DK + K F F+++++
Sbjct: 11 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 70
Query: 237 SVVIDLLKN-PKQKINDKEVDVKKATPKPE 265
+++ +I K + V+ K +
Sbjct: 71 VSAQAAIQSMNGFQIGMKRLKVQLKRSKND 100
Score = 37.4 bits (86), Expect = 7e-04
Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ + ++ L + F +G + + + D T S+ F F+ + + S + A + +
Sbjct: 25 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA----IQSM 80
Query: 166 GNHVINNKKIEAKKAKAKS 184
I K+++ + ++K+
Sbjct: 81 NGFQIGMKRLKVQLKRSKN 99
Score = 28.9 bits (64), Expect = 0.63
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++L + F +G + + + D T S+ F F+ + + S + A
Sbjct: 33 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 49.1 bits (116), Expect = 3e-08
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V L ++ +F G II ++ S + F I F + +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 246 PKQKINDKEVDVKKAT 261
+ + E+ V T
Sbjct: 60 THKVVGQNEIIVSHLT 75
Score = 29.8 bits (66), Expect = 0.18
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 429 GTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE 488
+ + II ++ S + F I F + + + + E
Sbjct: 11 SYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 68
Query: 489 VDVKKAT 495
+ V T
Sbjct: 69 IIVSHLT 75
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 49.6 bits (117), Expect = 3e-08
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 166 GNHVINNKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQR 225
G+H++ + +F+G L+P E+K ++ + + ++
Sbjct: 1 GSHMVEGSEST------TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TN 53
Query: 226 KNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
+ F ++ FE + L+ K+ E+ ++K +
Sbjct: 54 RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91
Score = 36.1 bits (82), Expect = 0.002
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
ELK S+ ++ + TG +R F ++ F+ E LEKA + +
Sbjct: 28 AELKVAISELFAKNDLAVVDV-RTGTNRKFGYVDFESAEDLEKA-----LELTGLKVFGN 81
Query: 174 KIEAKKAKAK 183
+I+ +K K +
Sbjct: 82 EIKLEKPKGR 91
Score = 25.7 bits (55), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
ELK S+ ++ + TG +R F ++ F+ E LEKA
Sbjct: 28 AELKVAISELFAKNDLAVVDV-RTGTNRKFGYVDFESAEDLEKA 70
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 49.3 bits (117), Expect = 3e-08
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN- 245
+FV + E +++EI+ F +G I + D+ K + + +E + +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 246 PKQKINDKEVDVKKATPK 263
+I + + V K
Sbjct: 70 NGAEIMGQTIQVDWCFVK 87
Score = 34.7 bits (79), Expect = 0.005
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
I + E+ ++E F YGEI+N+ L D TG S+G+A + ++ + A A
Sbjct: 14 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA----KEAL 69
Query: 166 GNHVINNKKIEAKKAKAK 183
I + I+ K
Sbjct: 70 NGAEIMGQTIQVDWCFVK 87
Score = 28.5 bits (63), Expect = 0.67
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E++E F YGEI+N+ L D TG S+G+A + ++ + A
Sbjct: 22 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 48.9 bits (116), Expect = 4e-08
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V L M EE ++ F G I ++ DK Q + F+ + +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 246 P-KQKINDKEVDVKKATP 262
++ K + V A P
Sbjct: 64 LNGLRLQTKTIKVSYARP 81
Score = 39.3 bits (91), Expect = 8e-05
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ +T+E + F GEIE+ L D TG+S G+ F+ + D + EKA +
Sbjct: 9 YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA----INTL 64
Query: 166 GNHVINNKKIEAKKAK 181
+ K I+ A+
Sbjct: 65 NGLRLQTKTIKVSYAR 80
Score = 33.2 bits (75), Expect = 0.013
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EE + F GEIE+ L D TG+S G+ F+ + D + EKA
Sbjct: 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.8 bits (116), Expect = 4e-08
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 178 KKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES 237
+K + ++FVG L P++ +EE++ F ++G E + K F FI E +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRT 55
Query: 238 VVIDLLKN-PKQKINDKEVDVKKATPKP 264
+ + K++ V+ A
Sbjct: 56 LAEIAKVELDNMPLRGKQLRVRFACHSA 83
Score = 35.7 bits (82), Expect = 0.002
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ ITEE +++ F KYG+ V + D F FI + E A +
Sbjct: 15 NLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIA----KVEL 64
Query: 166 GNHVINNKKIEAKKAKAKSG 185
N + K++ + A +
Sbjct: 65 DNMPLRGKQLRVRFACHSAS 84
Score = 27.6 bits (61), Expect = 1.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
EE+++ F KYG+ V + D F FI + E A
Sbjct: 23 EEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIA 60
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.0 bits (116), Expect = 4e-08
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMP-----YDKSKSQRKNFCFITFEHESVVI 240
+++VG + + +E + F + +Q KNF F+ F
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 241 DLLKNPKQKINDKEVDVKKATPKPEPFG 268
+ + + +++ G
Sbjct: 63 QAMAFDGIIFQGQSLKIRRPHDYQPLPG 90
Score = 46.7 bits (110), Expect = 3e-07
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKS-----DPNTGRSRGFAFIVFKDTESLEKASVE 160
I ITEE + + F+ + +T + + FAF+ F+ + +A
Sbjct: 8 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQA--- 64
Query: 161 DVIAEGNHVINNKKIEAKKAK 181
+A + + ++ ++
Sbjct: 65 --MAFDGIIFQGQSLKIRRPH 83
Score = 39.0 bits (90), Expect = 1e-04
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 608 EELKEHFSKYGEIENVTLKS-----DPNTGRSRGFAFIVFKDTESLEKA 651
E + + F+ + +T + + FAF+ F+ + +A
Sbjct: 16 EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQA 64
Score = 25.9 bits (56), Expect = 6.0
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 445 IIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEVDVKKATPKPEPFG 502
+Q KNF F+ F + + + +++ G
Sbjct: 33 QAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG 90
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 49.2 bits (117), Expect = 4e-08
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 171 NNKKIE----AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRK 226
N K++ ++ K+ ++ GG++ + D+ ++ F+ FG I+E + K
Sbjct: 1 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP------EK 54
Query: 227 NFCFITFEHESVVIDLLKNP-KQKINDKEVDVKKATPKP 264
+ F+ F + + I V P
Sbjct: 55 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 93
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
GI +T++ +++ FS +G+I + + +G++F+ F ES A +++
Sbjct: 25 GIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA----IVSV 74
Query: 166 GNHVINNKKIEAKKAKAK 183
I ++ K
Sbjct: 75 NGTTIEGHVVKCYWGKES 92
Score = 31.5 bits (71), Expect = 0.063
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ +++ FS +G+I + + +G++F+ F ES A
Sbjct: 33 QLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 70
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 49.5 bits (117), Expect = 4e-08
Identities = 14/91 (15%), Positives = 36/91 (39%)
Query: 173 KKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFIT 232
K+ ++ +++ GL E +++ + F + + ++ + F+
Sbjct: 7 KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 66
Query: 233 FEHESVVIDLLKNPKQKINDKEVDVKKATPK 263
F +E+ L KQ + ++ + V T K
Sbjct: 67 FRNEADYKAALCRHKQYMGNRFIQVHPITKK 97
Score = 36.4 bits (83), Expect = 0.002
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 115 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNKK 174
+ + F K +E+ + G++ G F+ F++ + A + + N+
Sbjct: 34 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA-----LCRHKQYMGNRF 88
Query: 175 IEAKKAKAK 183
I+ K
Sbjct: 89 IQVHPITKK 97
Score = 36.0 bits (82), Expect = 0.002
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 430 TDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKEV 489
+ H+ + ++ + F+ F +E+ L KQ + ++ +
Sbjct: 30 AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 89
Query: 490 DVKKATPK 497
V T K
Sbjct: 90 QVHPITKK 97
Score = 27.2 bits (59), Expect = 3.0
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 609 ELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ + F K +E+ + G++ G F+ F++ + A
Sbjct: 34 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 76
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.1 bits (116), Expect = 5e-08
Identities = 15/84 (17%), Positives = 32/84 (38%)
Query: 181 KAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVI 240
A G + + GL EEI F+ + + + F+ F + +
Sbjct: 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 71
Query: 241 DLLKNPKQKINDKEVDVKKATPKP 264
LK K++I + +++ K++
Sbjct: 72 KALKKHKERIGHRYIEIFKSSRAE 95
Score = 38.3 bits (88), Expect = 4e-04
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
EE+ + FS + N GRS G AF+ F E EKA + + I ++
Sbjct: 30 EEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA-----LKKHKERIGHR 84
Query: 174 KIEAKKAKAK 183
IE K+
Sbjct: 85 YIEIFKSSRA 94
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.6 bits (115), Expect = 7e-08
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
+ +++ LSP + + ++ + FA+F + + + + FITF ++ + L
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 244 KNP-KQKINDKEVDVKKATPKPE 265
K+ K + ++ K +
Sbjct: 78 HLVNGYKLYGKILVIEFGKNKKQ 100
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 48.0 bits (114), Expect = 7e-08
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V G I FAQ+GNI++ M N+ I ++ + L
Sbjct: 6 WVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK 58
Query: 246 PKQKINDKE-VDVKKATPK 263
+ + + VK K
Sbjct: 59 DGRIFGESIMIGVKPCIDK 77
Score = 37.6 bits (87), Expect = 3e-04
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 107 GIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166
G + F++YG I + + I ++ KA +++
Sbjct: 11 GFPQASASYILLQFAQYGNILKH------VMSNTGNWMHIRYQSKLQARKA-----LSKD 59
Query: 167 NHVINNKKI 175
+ +
Sbjct: 60 GRIFGESIM 68
Score = 34.1 bits (78), Expect = 0.005
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 436 EVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKINDKE-VDVKKA 494
+ ++ + S N+ I ++ + L + + + VK
Sbjct: 15 ASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 74
Query: 495 TPK 497
K
Sbjct: 75 IDK 77
Score = 33.8 bits (77), Expect = 0.008
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 601 GIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
G + F++YG I + + I ++ KA
Sbjct: 11 GFPQASASYILLQFAQYGNILKH------VMSNTGNWMHIRYQSKLQARKA 55
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 47.4 bits (112), Expect = 1e-07
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ V GLS + +++ F+++G I + + YD+ + + F F+ FE+ + +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 246 P-KQKINDKEVDV 257
+++ + + V
Sbjct: 71 ANGMELDGRRIRV 83
Score = 38.9 bits (90), Expect = 1e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ TE L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 16 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA----KERA 71
Query: 166 GNHVINNKKIE 176
++ ++I
Sbjct: 72 NGMELDGRRIR 82
Score = 35.8 bits (82), Expect = 0.002
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L+E FSKYG I +V++ D + RSRGFAF+ F++ + ++A
Sbjct: 24 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 67
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 47.4 bits (112), Expect = 2e-07
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 180 AKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV 239
A +I+VG L P+++ ++I+ F ++G I + ++ + F
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 240 IDLLKNPKQKINDKEVDVKKATPK 263
+ + + V+
Sbjct: 70 VYGRDG--YDYDGYRLRVEFPRSG 91
Score = 36.2 bits (83), Expect = 0.001
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
+ I + +++ F KYG I ++ LK+ FAF+ F+D E A V
Sbjct: 21 NLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPRDAEDA----VYGR 73
Query: 166 GNHVINNKKIEAKKAKAKSG 185
+ + ++ + ++ G
Sbjct: 74 DGYDYDGYRLRVEFPRSGRG 93
Score = 29.6 bits (66), Expect = 0.27
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+++++ F KYG I ++ LK+ FAF+ F+D E A
Sbjct: 29 KDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPRDAEDA 69
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 46.9 bits (111), Expect = 2e-07
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241
+ ++V L +E I+ F + + +++ F+ F + ++
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK------KIRDYAFVHFSNREDAVE 59
Query: 242 LLKN-PKQKINDKEVDVKKATPKP 264
+K + ++ ++V A P
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKPVD 83
Score = 35.4 bits (81), Expect = 0.002
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
++ +EE +++ F+ + R +AF+ F + E +A + A
Sbjct: 15 NLMLSTSEEMIEKEFNNIKPGAV------ERVKKIRDYAFVHFSNREDAVEA----MKAL 64
Query: 166 GNHVINNKKIEAKKAKAK 183
V++ IE AK
Sbjct: 65 NGKVLDGSPIEVTLAKPV 82
Score = 26.9 bits (59), Expect = 2.6
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
E +++ F+ + R +AF+ F + E +A
Sbjct: 23 EMIEKEFNNIKPGAV------ERVKKIRDYAFVHFSNREDAVEA 60
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.1 bits (111), Expect = 2e-07
Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+FVG + E +E++K F++ G ++ + YD+ + K + F ++ + + ++N
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 246 -PKQKINDKEVDVKKATPKPEPFGVRGGRGGR 276
++ + + + V A + ++ G
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 101
Score = 30.5 bits (68), Expect = 0.17
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
I ++ TEE LK+ FS+ G + + L D TG+ +G+ F ++D E+ A +
Sbjct: 15 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA----MRNL 70
Query: 166 GNHVINNKKIEAKKAKAKSGK 186
+ + + A ++ K
Sbjct: 71 NGREFSGRALRVDNAASEKNK 91
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 45.8 bits (108), Expect = 5e-07
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 184 SGKIFVGGLSPEMKDEEIKAH-FAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+ I++ L+ ++K +E+K A F + + + F+ F+ S +
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 243 LKN-PKQKINDKEVDVKKATPKPEP 266
L++ DK + ++ A +
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDSDI 87
Score = 36.6 bits (84), Expect = 9e-04
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 107 GIVHKITEE-----LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVED 161
+ KI ++ L FS++G+I ++ + RG AF++FK+ S A
Sbjct: 10 NLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK---MRGQAFVIFKEVSSATNA---- 62
Query: 162 VIAEGNHVINNKKIEAKKAKAKSGKI 187
+ + +K + + AK S I
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDSDII 88
Score = 26.9 bits (59), Expect = 2.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D++ + L FS++G+I ++ + RG AF++FK+ S A
Sbjct: 18 DELKKSLHAIFSRFGQILDILVSRSLK---MRGQAFVIFKEVSSATNA 62
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 44.3 bits (104), Expect = 2e-06
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
A K I V + + +EI F + I + K + FE
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 61
Query: 237 SVVIDLLKN-PKQKINDKEVDVKKA 260
+ + + I ++V +
Sbjct: 62 DEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 36.6 bits (84), Expect = 9e-04
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+E+ + F Y I G G A + F+ + A VI + I ++
Sbjct: 24 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA----VIDLNDRPIGSR 79
Query: 174 KIEAKKA 180
K++
Sbjct: 80 KVKLVLG 86
Score = 32.7 bits (74), Expect = 0.022
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+E+ + F Y I G G A + F+ + A
Sbjct: 24 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.6 bits (102), Expect = 4e-06
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 7/93 (7%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
+ + GL + +I F+ + + + F + +
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEFATHEDAVAAMAK 74
Query: 246 PKQKINDKEVDVKKATPKPEPFGVRGGRGGRGG 278
K + + V++ + G G G
Sbjct: 75 DKANMQHRYVELFLNSTAG-----TSGSGPSSG 102
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.8 bits (98), Expect = 2e-05
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 106 PGIVHKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
P ++++I E+L+ SK+G+I + G A + F+D E +
Sbjct: 26 PLVLNEIREDLRVECSKFGQIRKL----LLFDRHPDGVASVSFRDPEEADYCIQT----L 77
Query: 166 GNHVINNKKIEAKKAKAKS 184
++I A+ +
Sbjct: 78 DGRWFGGRQITAQAWDGTT 96
Score = 39.1 bits (91), Expect = 2e-04
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 600 PGIVDKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVE 654
P ++++I E+L+ SK+G+I + G A + F+D E +
Sbjct: 26 PLVLNEIREDLRVECSKFGQIRKL----LLFDRHPDGVASVSFRDPEEADYCIQT 76
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.3 bits (96), Expect = 3e-05
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
AK+ + +++ L M ++E++ FG +I T + D S + R E
Sbjct: 11 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTE 70
Query: 237 SVVIDLLKNPKQKINDKEVDVKKATPKP-EPFGVR 270
+ N K + P EP +
Sbjct: 71 KC-----EAVIGHFNGKFIKTPPGVSAPTEPLLCK 100
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 40.1 bits (93), Expect = 3e-05
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
+++ GL P D+++ +G I+ T+ DK+ ++ K + F+ F+ S +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT-- 58
Query: 247 KQKINDKEVDVKKA 260
+ V + A
Sbjct: 59 --ALKASGVQAQMA 70
Score = 27.4 bits (60), Expect = 1.2
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 107 GIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAE 165
G+ T++ L + YG+I + D T + +G+ F+ F + +KA +
Sbjct: 5 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA-----VTA 59
Query: 166 GNHVINNKKIEAKKAK 181
+ ++A+ AK
Sbjct: 60 ----LKASGVQAQMAK 71
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 39.4 bits (91), Expect = 1e-04
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 186 KIFVGGLSPEMKDEEIKAHF---AQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+FV GLS + D E+ +FG I + + S + + + D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 243 LKNPKQKINDKEVD 256
L+ Q +N+ VD
Sbjct: 70 LRA-IQCVNNVVVD 82
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 37.7 bits (87), Expect = 4e-04
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
+ +++VGGL P + F +FG+I + + + + +
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD---SFAYIQYESLDAAQAACAKM 73
Query: 244 KNPKQKINDKEVDVKKATPKP 264
+ D+ + V A P
Sbjct: 74 RGFPLGGPDRRLRVDFAKSGP 94
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 36.0 bits (82), Expect = 0.001
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
++ V GL P +++K H + G++ ++ D F+ E + + L N
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDN 57
Query: 246 PKQKINDKEVDVKKATPKPEPFGVRGGRGGRGGR 279
K E + K + G R GR
Sbjct: 58 --TKFRSHEGETAYIRVKVD-----GPRSPSYGR 84
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.2 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 602 IVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
D+ EE E KYGE+E + D G ++ F+ E EKA
Sbjct: 35 HYDEFFEEVFTEMEEKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKA 84
Score = 36.2 bits (83), Expect = 0.002
Identities = 9/88 (10%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 172 NKKIEAKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFI 231
N A ++ + + E +E ++G + E + + ++
Sbjct: 15 NSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYV 73
Query: 232 TFEHESVVIDLLKNP-KQKINDKEVDVK 258
F E + + + N + + +
Sbjct: 74 KFRREEDAEKAVIDLNNRWFNGQPIHAE 101
Score = 35.8 bits (82), Expect = 0.003
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 108 IVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEG 166
+ EE E KYGE+E + D G ++ F+ E EKA VI
Sbjct: 35 HYDEFFEEVFTEMEEKYGEVEEMN-VCDNLGDHLVGNVYVKFRREEDAEKA----VIDLN 89
Query: 167 NHVINNKKIEAK 178
N N + I A+
Sbjct: 90 NRWFNGQPIHAE 101
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 182 AKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVID 241
+ S + V GL + + ++ +FG I M K ++ F + +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK---RQALVEFENIDSAKECVT 69
Query: 242 LLKNPKQKINDKEVDVKKATPKP 264
+ I ++ +T K
Sbjct: 70 FAADVPVYIAGQQAFFNYSTSKR 92
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.9 bits (82), Expect = 0.002
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
S I V L + +E+ + + Y + + E I +
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDL----KYCYVDRNKRTAFVTLLNGEQAQNAIQM 59
Query: 243 LKNPKQKINDKEVDVKKATPKP 264
K++ V+
Sbjct: 60 FHQ--YSFRGKDLIVQLQPTDA 79
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 35.5 bits (81), Expect = 0.002
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
++ V GL P +++K H + G++ ++ D ++ E + L +
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD----GMGMVEYLRKEDMEYALRKLDD 72
Query: 246 PKQKINDKEVDVKKATPKPEPFGVRGGRGGRG 277
K E + PE R G
Sbjct: 73 --TKFRSHEGETSYIRVYPE----RSSGPSSG 98
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 35.4 bits (81), Expect = 0.003
Identities = 7/81 (8%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHES---VVIDL 242
+I V L + + + F++FG +++ + + + +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKLS 64
Query: 243 LKNPKQKINDKEVDVKKATPK 263
L + + +
Sbjct: 65 LDGQNIYNACCTLRIDFSKLT 85
Score = 30.0 bits (67), Expect = 0.29
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 110 HKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
+ +T + L + FSK+G + + T ++ A + + D S + A
Sbjct: 17 YPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQYADPVSAQHA 61
Score = 30.0 bits (67), Expect = 0.30
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ L + FSK+G + + T ++ A + + D S + A
Sbjct: 22 DVLHQIFSKFGTVLKIIT----FTKNNQFQALLQYADPVSAQHA 61
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 35.6 bits (81), Expect = 0.004
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
F G L + E++ F+ G I + + + N
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL--FKEKAKEALGKAKDANNG 71
Query: 247 KQKINDKEVDVKKATPKPEP 266
++ +KEV + + E
Sbjct: 72 NLQLRNKEVTWEVLEGEVEK 91
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 34.2 bits (78), Expect = 0.005
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
L+ FS +G I ++ + R AF+ ++ ES ++A V + +
Sbjct: 18 TLLRGAFSPFGNIIDL------SMDPPRNCAFVTYEKMESADQA----VAELNGTQVESV 67
Query: 174 KIEAKKAKAK 183
+++ A+ +
Sbjct: 68 QLKVNIARKQ 77
Score = 27.3 bits (60), Expect = 1.5
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
L+ FS +G I ++ + R AF+ ++ ES ++A
Sbjct: 18 TLLRGAFSPFGNIIDL------SMDPPRNCAFVTYEKMESADQA 55
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.0 bits (77), Expect = 0.009
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLL 243
S + + + P + +E++K F+ G +++ + + + I + L
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQAL 65
Query: 244 KNPKQK 249
+
Sbjct: 66 IDLHNH 71
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 33.5 bits (76), Expect = 0.011
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 4/89 (4%)
Query: 178 KKAKAKSGKIFVGGLSP-EMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
K + + + ++ FG I + +++ T E
Sbjct: 2 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAF---IEMATTEDA 58
Query: 237 SVVIDLLKNPKQKINDKEVDVKKATPKPE 265
+D + K V V +
Sbjct: 59 QAAVDYYTTTPALVFGKPVRVHLSQKYKR 87
Score = 27.7 bits (61), Expect = 1.4
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 114 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHVINNK 173
+L + +G I N + + N AFI TE + A D ++ K
Sbjct: 24 YQLLQLVEPFGVISNHLILNKIN------EAFIEMATTEDAQAA--VDYYTTTPALVFGK 75
Query: 174 KIEAKKAKAK 183
+ ++
Sbjct: 76 PVRVHLSQKY 85
Score = 26.2 bits (57), Expect = 4.1
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+L + +G I N + + N AFI TE + A
Sbjct: 24 YQLLQLVEPFGVISNHLILNKIN------EAFIEMATTEDAQAA 61
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.5 bits (73), Expect = 0.028
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 184 SGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVV---I 240
S + + L E+ + E+ A F + + KN F+ E +
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMV 61
Query: 241 DLLKNPKQKINDKEVDVKKATPK 263
+ + ++ + ++ + K
Sbjct: 62 NYYSAVTPHLRNQPIYIQYSNHK 84
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 32.8 bits (74), Expect = 0.030
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 110 HKITEELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKASVEDVIAEGNHV 169
+ + + F Y + +S I F + S A +
Sbjct: 21 SETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSAADA----RLRLHKTE 70
Query: 170 INNKKIEAKKAKAKS 184
K+++ A+
Sbjct: 71 FLGKEMKLYFAQTLH 85
Score = 32.1 bits (72), Expect = 0.053
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 608 EELKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
+ + F Y + +S I F + S A
Sbjct: 25 AKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSAADA 62
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.4 bits (73), Expect = 0.036
Identities = 9/60 (15%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 99 KNKMVSHPGIVHKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 157
++ +V++ G+ + ++ L K G ++ + + + ++F ++ TE ++A
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRA 72
Score = 31.6 bits (71), Expect = 0.058
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 183 KSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+S + GGL + ++ + G + MP K + F +
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEES--- 69
Query: 243 LKNPKQKINDKEVDVKKATPKP 264
K +N KEV
Sbjct: 70 -KRAYVTLNGKEVVDDLGQKIT 90
Score = 31.6 bits (71), Expect = 0.069
Identities = 9/60 (15%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 593 KNKMVSHPGIVDKITEE-LKEHFSKYGEIENVTLKSDPNTGRSRGFAFIVFKDTESLEKA 651
++ +V++ G+ + ++ L K G ++ + + + ++F ++ TE ++A
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRA 72
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.3 bits (73), Expect = 0.041
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 112 ITEELKEHFSKYGEIENVTLKSDPNTGR--SRGFAFIVFKDTESLEKASVEDVIAEGNHV 169
I E++++ SKYG ++++ + + G F+ F +KA +
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA----MQGLTGRK 82
Query: 170 INNKKIEAKKA 180
N+ + K
Sbjct: 83 FANRVVVTKYC 93
Score = 32.3 bits (73), Expect = 0.044
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 604 DKITEELKEHFSKYGEIENVTLKSDPNTGR--SRGFAFIVFKDTESLEKA 651
++I E++++ SKYG ++++ + + G F+ F +KA
Sbjct: 25 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA 74
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 30.3 bits (67), Expect = 0.11
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 187 IFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNP 246
I + GL ++ ++E+ + + + K F+T + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 247 KQK-INDKEVDVKKATPKP 264
Q + ++E+ V+
Sbjct: 54 HQSRLRERELSVQLQPTDA 72
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 30.1 bits (67), Expect = 0.23
Identities = 10/104 (9%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 184 SGKIFVGGLSPE-MKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDL 242
+ + V L+PE + + + F +G++ ++ + +K + +
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF-----NKKENALVQMADGNQAQLA 56
Query: 243 LKNP-KQKINDKEVDVKKATPKPEPFGVRGGRGGRGGRGGRGGR 285
+ + K++ K + + + + G +
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSP 100
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 31.1 bits (69), Expect = 0.36
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 377 TRSSYREWGHVADNLLLCDNFPSIRELEIPEAFLTKTTTVPMTTTEHMVLVTG 429
T ++ V F IRE + A ++ V++ G
Sbjct: 5 TPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVG 57
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
{Escherichia coli [TaxId: 562]}
Length = 140
Score = 29.6 bits (66), Expect = 0.53
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 502 GVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGYGEL 537
G+ G G GGRG +G + G G G+ GG L
Sbjct: 19 GIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPL 54
Score = 29.2 bits (65), Expect = 0.89
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 270 RGGRGGRGGRGGRGGR-MAGGYGGYGGYGGGYGGILYKPLLFY 311
R GRG G G GGR G GG PL
Sbjct: 15 RLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 57
Score = 28.5 bits (63), Expect = 1.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 268 GVRGGRGGRGGRGGRGGRMAGGYGGYGGYGGGY 300
G+ G G GGRG +G + G G G+ GG
Sbjct: 19 GIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQ 51
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 28.8 bits (63), Expect = 0.81
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 186 KIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKN 245
I L EI+ F++FG++ +P + F ++
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRH 65
Query: 246 -PKQKINDKEVDVKKATPKPEP 266
K + + ++ A
Sbjct: 66 LAYSKFHHVPLYLEWAPIGVFG 87
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 27.5 bits (60), Expect = 1.4
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 177 AKKAKAKSGKIFVGGLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHE 236
A+ + + +F+ L E + + F QF E + R + F+ F E
Sbjct: 1 AQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP-----NRHDIAFVEFTTE 55
Query: 237 SVVIDLLKNPKQKINDKEVD 256
K+ + ++
Sbjct: 56 LQS----NAAKEALQGFKIT 71
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
thermophilus [TaxId: 274]}
Length = 146
Score = 28.4 bits (63), Expect = 1.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 268 GVRGGRGGRGGRGGRGGR-MAGGYGGYGGYGGGY 300
G G G RG +G + +GG + GG
Sbjct: 18 GPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGR 51
Score = 28.4 bits (63), Expect = 1.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 502 GVRGGRGGRGGRGGRGGR-MAGGYGGYGGYGGGY 534
G G G RG +G + +GG + GG
Sbjct: 18 GPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGR 51
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 157
Score = 28.4 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 269 VRGGRGGRGG---RGGRGGRMAGGYGGYGGYGG 298
V+GG GG G R + G GG GG GG
Sbjct: 10 VKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGG 42
Score = 28.4 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 503 VRGGRGGRGG---RGGRGGRMAGGYGGYGGYGG 532
V+GG GG G R + G GG GG GG
Sbjct: 10 VKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGG 42
>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.1 bits (62), Expect = 1.6
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 62 NCLLEDSIGKPLTVSCSHHYYLFDQILRTHFFYIMEAKNKMVSHPGIVHKITEELKEHFS 121
+ L+ +S S S + H+ P I + L +H+S
Sbjct: 37 SFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYS 96
Query: 122 K 122
K
Sbjct: 97 K 97
Score = 26.6 bits (58), Expect = 4.0
Identities = 12/61 (19%), Positives = 19/61 (31%)
Query: 556 NCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFYIVEAKNKMVSHPGIVDKITEELKEHFS 615
+ L+ +S S S + HY P I + L +H+S
Sbjct: 37 SFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYS 96
Query: 616 K 616
K
Sbjct: 97 K 97
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 156
Score = 27.2 bits (60), Expect = 4.7
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 269 VRGGRGGRGG---RGGRGGRMAGGYGGYGGYGG 298
V GRGG G R + G GG GG GG
Sbjct: 10 VAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGG 42
Score = 27.2 bits (60), Expect = 4.7
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 503 VRGGRGGRGG---RGGRGGRMAGGYGGYGGYGG 532
V GRGG G R + G GG GG GG
Sbjct: 10 VAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGG 42
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 27.5 bits (61), Expect = 4.7
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 546 FDWISSSFSENCLLEDSIGKPLTVSCSHYHYLFDQNLRTHYFY 588
W S +++ + + F QN++ HY
Sbjct: 128 IKWEKGSVGWWWKFPEAL-SDMGL--------FGQNMQYHYLG 161
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 26.5 bits (58), Expect = 6.6
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 270 RGGRGGRGGRGG--RGGRMAGGYGGYGGYGGGYGGILYKPL 308
RG R GG RG GG G G + ++PL
Sbjct: 8 RGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHN--HEPL 46
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 27.2 bits (60), Expect = 6.9
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 410 LTKTTTVPMTTTEHMVLVTGTDMMHMEVTEAVPMEIIETEMPYDKSKSQRKNFCFITFEH 469
LT + + + D+ + E + + + Y + QR + E
Sbjct: 150 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEV 209
Query: 470 ESVVIDLLKNP 480
+S++ID + P
Sbjct: 210 DSILIDEARTP 220
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 25.4 bits (55), Expect = 7.7
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 191 GLSPEMKDEEIKAHFAQFGNIIETEMPYDKSKSQRKNFCFITFEHESVVIDLLKNPKQKI 250
G P ++K + + + + + C F +L N + K
Sbjct: 23 GADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK- 81
Query: 251 NDKEVDVKKATP 262
K+ D++++ P
Sbjct: 82 --KKYDLQRSGP 91
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.8 bits (58), Expect = 9.1
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 209 GNIIETEMPYDKSKSQRKNFCFITFEH-----ESVVIDLLKNPKQKIN-DKEVDVKKATP 262
++E ++ E VID + K I D E V A P
Sbjct: 210 RKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGP 269
Query: 263 KPEPFGVRGGRGGRGGRGGRGG 284
P R GR GR +
Sbjct: 270 MPVTHSSAAQRRGRVGRNPKNE 291
>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 307
Score = 26.8 bits (59), Expect = 9.5
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 543 WQFFDWISSSFSENCLLEDSIGKPLTVSCSHYHY-LFDQNLRTHYFY 588
++ DW S+ + PL S +F LR HY
Sbjct: 116 FKVNDWTSTQKPFEYI-----RIPLPHVLSGEDGGVFGATLRRHYLV 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,612,568
Number of extensions: 132033
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 262
Length of query: 661
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 570
Effective length of database: 1,158,166
Effective search space: 660154620
Effective search space used: 660154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)