BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15854
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
T D Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+ FGTFPGNYV+
Sbjct: 2 TSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
T D Y ALY+Y PQNDDELELR+G+ V VMEKCDDGW+VG+S+R+ FGTFPGNYV+
Sbjct: 2 TSQDLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ S PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+ FGTFPGNYV
Sbjct: 3 SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVEQQSR 76
G+A AKFNF T +E+S KGE +TL+R+VD NW+EGRI GT R+GIFP+TYV+ R
Sbjct: 7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A +N+ E+ R+GE + ++ + D+ WY G + G FP YV+
Sbjct: 11 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
+A AKFNF T +E+S KGE +TL+R+VD NW+EGRI GT R+GIFP+TYV+
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A +N+ E+ R+GE + ++ + D+ WY G + G FP YV+ S
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
ARAKF+F AQT EL L KG++V + +++D NW+EG R GIFP TY+E
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
P A +++K Q EL L++G+ V++ ++ D WY G + G G FP Y+E S
Sbjct: 9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG--EHHGRVGIFPRTYIELLS 63
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GT-RRGIFPVTYVE 72
L G+A A++ F +ELS KGE + LIR+V+ NW+EGRI GT R+GIFP +YV+
Sbjct: 15 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y +K + EL R+GE + ++ K ++ WY G +G G FP +YV+
Sbjct: 22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
RA ++ + E++L G++V ++ + ++ W+ ++ +RG P +++E P +
Sbjct: 14 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 67
Query: 83 PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
P D+T + + PY A+ Y DE+ L EGE V V+ K DGW+V ++
Sbjct: 68 P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 124
Query: 143 GTFPGNYVERA 153
G FP Y++++
Sbjct: 125 GYFPSMYLQKS 135
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ +Y+ + E+ L G+ V V+EK + GW+ Q G P +++E
Sbjct: 13 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF--CQMKAKRGWIPASFLE 63
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
E+SL++GE V +I ++ + W+ R G FP Y+++ +
Sbjct: 96 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ 137
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
RA ++ + E++L G++V ++ + ++ W+ ++ +RG P +++E P +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83 PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
P D+T + + PY A+ Y DE+ L EGE V V+ K DGW+V ++
Sbjct: 69 P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
G FP Y++++
Sbjct: 126 GYFPSMYLQKS 136
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ +Y+ + E+ L G+ V V+EK + GW+ Q G P +++E
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF--CQMKAKRGWIPASFLE 64
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
E+SL++GE V +I ++ + W+ R G FP Y+++ +
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ 138
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
RA ++ + E++L G++V ++ + ++ W+ ++ +RG P +++E P +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83 PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
P D+T + + PY A+ Y DE+ L EGE V V+ K DGW+V ++
Sbjct: 69 P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
G FP Y++++
Sbjct: 126 GYFPSMYLQKS 136
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ +Y+ + E+ L G+ V V+EK + GW+ Q G P +++E
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF--CQMKAKRGWIPASFLE 64
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY-------VEQQSRATPSGAPVDQT 87
E+SL++GE V +I ++ + W+ R G FP Y V Q R GAP ++
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPPRRS 156
Query: 88 LHIDTHS 94
+ HS
Sbjct: 157 SIRNAHS 163
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
RA ++ + E++L G++V ++ + ++ W+ ++ +RG P +++E P +
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE------PLDS 68
Query: 83 PVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF 142
P D+T + + PY A+ Y DE+ L EGE V V+ K DGW+V ++
Sbjct: 69 P-DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV--IRKDDVT 125
Query: 143 GTFPGNYVERA 153
G FP Y++++
Sbjct: 126 GYFPSMYLQKS 136
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ +Y+ + E+ L G+ V V+EK + GW+ Q G P +++E
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF--CQMKAKRGWIPASFLE 64
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY-------VEQQSRATPSGAPVDQT 87
E+SL++GE V +I ++ + W+ R G FP Y V Q R GAP ++
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPPRRS 156
Query: 88 LHIDTHS 94
+ HS
Sbjct: 157 SIRNAHS 163
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
AR KF+F AQ+ EL+L KG++V + + VD NW EG R GIFP YVE
Sbjct: 10 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++++ Q+ EL L++G+ V++ ++ D W G + G G FP NYVE
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVE 60
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+Y+Y Q++DE+ R+G+ + ++ DDGW G+ QR+G G P NY+E
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 100 HALYNYKPQNDDELELREGETVFV--MEKCD--DGWYVGSSQRSGCFGTFPGNYVERASL 155
+Y Y PQNDDELEL G+ +F+ ME+ +GW G+S +GC G P NY+ +A
Sbjct: 20 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE 79
Query: 156 ALRWVENASK 165
W+ + S
Sbjct: 80 CSTWIFHGSS 89
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
AR KF+F AQ+ EL+L KG++V + + VD NW EG R GIFP YVE
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL 155
++++ Q+ EL L++G+ V++ ++ D W G + G G FP NYVE L
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEG--EHHGRLGIFPANYVEVLPL 58
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+Y+Y +DEL +EG ++V++K DDGWY G +G G FPGNYVE S
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEG--VMNGVTGLFPGNYVESIS 73
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
AP+ E + A +++ ELS +G ++ +I++ D+ W+EG + G+FP YVE
Sbjct: 12 APRSYLE-KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
Query: 73 QQS 75
S
Sbjct: 71 SIS 73
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+Y+Y ++DE+ ++G+T+ +++ DDGW G+ +R+G G P NYVE
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 62 RRGIFPVTYVE----QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELRE 117
++G FP ++V+ RATP+ PV Q + A+Y+Y N+DEL +
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFHPVCQVI------------AMYDYAANNEDELSFSK 55
Query: 118 GETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
G+ + VM K D W+ G + +G G FP NYV+ +
Sbjct: 56 GQLINVMNKDDPDWWQG--EINGVTGLFPSNYVKMTT 90
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
R P Q A +++ A ELS KG+L+ ++ + D +W++G I G+FP Y
Sbjct: 26 RATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY 85
Query: 71 VEQQSRAT 78
V+ + ++
Sbjct: 86 VKMTTDSS 93
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+P + +NY + +DEL L +G V VMEKC DGW+ GS +G G FP NYV
Sbjct: 5 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY--NGQVGWFPSNYV 56
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
A KFN++A+ ELSL+KG V ++ + + W+ G + G FP YV ++
Sbjct: 7 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEE 59
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+A F+F Q EL+ +G+++TLI + D NW+EG++ RRGIFP YV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ EL + G+ + ++ K D W+ G Q + G FP NYV
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYV 54
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+A F+F Q EL+ +G+++TLI + D NW+EG++ RRGIFP YV
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ EL + G+ + ++ K D W+ G Q + G FP NYV
Sbjct: 8 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYV 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+A F+F Q EL+ +G+++TLI + D NW+EG++ RRGIFP YV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ EL + G+ + ++ K D W+ G Q + G FP NYV
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG--QLNNRRGIFPSNYV 54
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+P + +NY + +DEL L +G V VMEKC DGW+ GS +G G FP NYV
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS--YNGQVGWFPSNYV 69
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
A KFN++A+ ELSL+KG V ++ + + W+ G + G FP YV ++
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEE 72
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ A+Y+Y + DE+ ++G+ + ++ D+GW G+ QR+G G P NYVE
Sbjct: 6 FRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
RA ++F + EL +G+++TL ++D NW+EG + G FP+ YVE
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+N+ EL +EG+ + + + D+ WY G G G FP NYVE
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEG--MLHGHSGFFPINYVE 60
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 50.4 bits (119), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+A +F++ AQ EL++ GE++T IR+ D W+EG+I RRG+FP +V +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 103 YNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
++Y+ Q+DDEL + GE + + K D GW+ G Q +G G FP N+V
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGGWWEG--QINGRRGLFPDNFV 53
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
RA ++F + EL +G+++TL ++D NW+EG + + G FP+ YVE
Sbjct: 14 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
SD ALY+++P+N+ EL +EG+ + + + D+ WY G G G FP NYVE
Sbjct: 9 SDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEG--MLHGQSGFFPINYVE 64
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+P + Y + +DEL L +G V VMEKC DGW+ GS +G G FP NYV
Sbjct: 1 IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGS--YNGQIGWFPSNYV 52
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
A KF +VA+ ELSLVKG VT++ + + W+ G + G FP YV ++
Sbjct: 3 AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEE 55
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L + +A ++F + EL +G+L+TL ++D NW+EG + + G FP++YV+
Sbjct: 11 LDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+ND EL REG+ + + + D+ WY G G G FP +YV+
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLH--GQSGFFPLSYVQ 66
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
R ++F + EL +G+++TL ++D NW+EG I G FP+ YVE
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
LY+++P+N EL +EG+ + + + D+ WY G G G FP NYVE
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
L++Y PQN+DELEL G+ + V+E+ ++GW+ G+ G FP N+V+
Sbjct: 10 LFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNK--LGLFPSNFVK 57
Score = 41.2 bits (95), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
Q + F++ Q EL L+ G+++ +I V+ W+ G + + G+FP +V++
Sbjct: 6 QCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKE 58
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
Y ALY+Y QN DEL+L G+ + V+ + +DGW+ + +R+G G PG+Y+E+ S
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWW--TVERNGQRGFVPGSYLEKLS 64
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
RA +++ AQ EL L G+++ +I ++ W+ +RG P +Y+E+ S
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+++ +A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++V+
Sbjct: 171 RMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++V+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++ + DDEL L +G+ V + EK ++GW+ GS +G G FP YVE
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS--LNGKKGHFPAAYVE 60
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+A ++F A+ EL+L KG++V + + + W+ G + ++G FP YVE+
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+++ +A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++V+
Sbjct: 15 RMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+A AKF++V +T ELS KG + L +R ++W+EGR G+ P Y+ Q + PS
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ +P+ A ++Y + EL ++G ++ + ++ D W+ G + +G G P Y+
Sbjct: 5 SSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG--RHNGIDGLIPHQYI 61
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
S +A A ++F + +L KG+++T++++ D N+W+ GR+ R GIFP YVE
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVE 151
ALY++ + +L R+G+ + +++K D + W+ G + +G G FP NYVE
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTG--RVNGREGIFPANYVE 58
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156
L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+ G FP N+V+ +
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK--LGLFPSNFVKELEVT 65
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
Q + F ++ Q EL L G+++ + V+ W+ G + + G+FP +V++
Sbjct: 9 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
Y ALY + PQ +++LE+R G+ + ++E ++ W+ G Q G FP N+V+R S
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDR--IGFFPANFVQRLS 63
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
A + FV Q + +L + G+++TL+ + +W++G+I R G FP +V++ S
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+ G FP N+V+
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK--LGLFPSNFVK 54
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
Q + F ++ Q EL L G+++ + V+ W+ G + + G+FP +V+
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY + PQ D +L L+ G+ V ++EK WY GS +G G FP NYV+ A
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC--NGRTGIFPANYVKPA 57
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A + F Q +L L G+ V L+ ++ W++G R GIFP YV+
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+Y+Y QNDDEL +G+ + V+ K D W+ G + SG G FP NYV+
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG--EVSGQVGLFPSNYVK 55
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
Q +++ AQ EL+ KG+++ ++ + D +W++G + + G+FP YV+ + PS
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQS 75
A A++NF A+ ELSL +G++V + R+ D W++G R G FP TYVE++
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASL 155
A YN+ ++ EL LREG+ V + + D GW+ G + +G G FP YVE +
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET--NGRIGWFPSTYVEEEGI 66
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 46.2 bits (108), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
P AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
Score = 35.0 bits (79), Expect = 0.027, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+A F+F Q EL +G+ + ++ D NW++G + G+FP YV
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++P+ND+EL L EG+ VF+ K GW V ++ G P +V
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
Q A +++ A ELS KG+L+ ++ + D +W++G I G+FP YV+ + + PS
Sbjct: 20 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPS 79
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+Y+Y N+DEL +G+ + VM K D W+ G + +G G FP NYV+ +
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQG--EINGVTGLFPSNYVKMTT 74
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
P AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 210
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y++K DDEL + G+ + V+ E+CD WY ++ +G G P NY+E
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIE 54
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
+A AK++F A ELS +G+++ ++ D NW++ + + G P Y+E +
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
+A F+F Q EL +G+ + ++ D NW++G + G+FP YV +R
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
++Y PQNDDELEL+ G+ + V+ + ++GW+ G +G G FP N+++ S
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIKELS 74
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
+ F+++ Q EL L G+++ ++ V+ W+EG + + G+FP ++++ S
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
+A+FNF ELS+ KG+++ + R + W+EG + R G FP YV + + SG
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSG 72
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A +N+K N+DEL + +G+ ++V + GW+ G+ +G G FP NYV
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT--LNGRTGWFPSNYV 62
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
++Y PQNDDELEL+ G+ + V+ + ++GW+ G +G G FP N+++ S
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIKELS 63
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
+ + F+++ Q EL L G+++ ++ V+ W+EG + + G+FP ++++ S
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
S+ + F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+
Sbjct: 8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G + +G G FP N+V+
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 64
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++P+ND+EL L EG+ VF+ K GW V ++ G P +V
Sbjct: 6 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY ++P+ DEL + EG+ +++ + D W+ G+S+ G G P NYV
Sbjct: 17 FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSK--GRTGLIPSNYV 66
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGA 82
RA + F +T EL + +G+++ + D NW++G R G+ P YV +Q+ +
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAES----- 72
Query: 83 PVDQTLH 89
+D LH
Sbjct: 73 -IDNPLH 78
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
RAKFNF ELS KG+++ + R + W+EG + R G FP YV +
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVRE 62
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 91 DTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
D ++ + A +N++ N+DEL +G+ + V + GW+ G+ +G G FP NYV
Sbjct: 3 DNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--LNGRTGWFPSNYV 60
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQS 75
+ F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+ S
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G + +G G FP N+V+ S
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVKLLS 65
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVER 152
Y ALY ++ +N DE+ G+ + V EK + GW GS Q G FG FP NYVE+
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVEK 61
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+P + Y + +DEL L G V V E C DGW+ GS +G G FP NYV
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGS--YNGQIGWFPSNYV 53
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
A F +VA+ ELSLV G VT+ + W+ G + G FP YV ++
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLEE 56
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A+A N+ + +L KG+++ L R++D NW++G I GIFP + VE
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL NY+ +N +L+ +G+ + + + D+ WY G + +G G FP + VE
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQG--EINGVSGIFPASSVE 60
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
+ ALY ++P+ DEL EG+ +++ + D W+ G+S+ G G P NYV S
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAEQS 63
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
RA + F +T EL +G+++ + D NW++G R G+ P YV +QS
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQ 73
G A+A+++F A+ ELSL +G+++ ++ ++ W+ G I R G FP YVE+
Sbjct: 6 GTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y++ ++ EL L+EG+ + ++ +K GW+ G + G G FP NYVE
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRG--EIYGRIGWFPSNYVE 59
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+ Y +EL+L++GE + V+ K DGW G S +G G FP +YV
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG--RIGTRRGIFPVTYV 71
A + A EL L KGE + ++ + + W +G + R GIFP YV
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
+ F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G + +G G FP N+V+
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 57
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY ++P+ DEL EG+ +++ + D W+ G+S+ G G P NYV
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYV 55
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
RA + F +T EL +G+++ + D NW++G R G+ P YV +Q
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ DDE+ + + +E DDGW+ G + G +G FP NYVE
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A A +++ A E+S +++T I +D+ W+ G R G+FP YVE
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
S+ + F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+
Sbjct: 2 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 102 LYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G + +G G FP N+V+
Sbjct: 9 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG--ELNGRRGVFPDNFVK 58
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ DDE+ + + +E DDGW+ G + G +G FP NYVE
Sbjct: 15 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 63
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A A +++ A E+S +++T I +D+ W+ G R G+FP YVE
Sbjct: 13 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A Y+Y D+EL E + + +E DD W++G ++ G G FP NYV
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYV 71
A A++++ A EL+ V+ + + I VD++W+ G + +G+FP YV
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
RAKFNF ELS KG+++ + R + W+EG R G FP YV +
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A +N++ N+DEL +G+ + V + GW+ G+ +G G FP NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
+A F+F Q EL +G+ + ++ D NW++G + G+FP YV +R
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 59
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYV 71
A A +NF + +L+ KG+++T++++ D N+W+ GR + GIFP YV
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 36.2 bits (82), Expect = 0.012, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYV 150
ALYN+ + +L ++G+ + +++K D + W+ G + +G G FP NYV
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRT--NGKEGIFPANYV 57
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 54
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
+A F+F Q EL +G+ + ++ D NW++G + G+FP YV +R
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 59
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYV 52
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
G +A F+F Q EL +G+ + ++ D NW++G + G+FP YV
Sbjct: 1 GSVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y Q DEL +EG+T+ V +K GW+ G + +G G P NYV+
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYVQ 57
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
Q +A +++ AQT EL+ +G+ + + ++ W+EG + +RG P YV+
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ D+EL + GE + V++ D W+ G + R G FP N+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG--IGLFPSNFV 69
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ RA ++F A EL+ GE++ ++ D NW++G G+FP +V
Sbjct: 19 KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE 78
Query: 81 GAPV 84
A V
Sbjct: 79 AAAV 82
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 43.5 bits (101), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A Y+Y D+EL E + + +E DD W++G ++ G G FP NYV
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
Score = 30.4 bits (67), Expect = 0.57, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYV 71
A A++++ A EL+ V+ + + I VD++W+ G + +G+FP YV
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
RAKFNF ELS KG+++ + R + W+EG R G FP YV +
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A +N++ N+DEL +G+ + V + GW+ G+ +G G FP NYV
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y Q DEL +EG+T+ V +K GW+ G + +G G P NYV+
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG--ELNGKRGWVPANYVQ 56
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
Q +A +++ AQT EL+ +G+ + + ++ W+EG + +RG P YV+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ DDE+ + + +E DDGW+ G + G +G FP NYVE
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 70
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
A A +++ A E+S +++T I +D+ W+ G R G+FP YVE + SG
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSSG 79
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 43.5 bits (101), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A Y+Y D+EL E + + +E DD W++G ++ G G FP NYV
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
Score = 30.4 bits (67), Expect = 0.63, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYV 71
A A++++ A EL+ V+ + + I VD++W+ G + +G+FP YV
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 43.5 bits (101), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY+Y P N ++L+LR+G+ F++E+ + W+ + ++G G P NYV A
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNLPWW-RARDKNGQEGYIPSNYVTEA 57
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
RAKFNF ELS KG+++ + R + W+EG R G FP YV +
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A +N++ N+DEL +G+ + V + GW+ G+ +G G FP NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT--HNGRTGWFPSNYV 58
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY+Y P N ++L+LR+G+ F++E+ + W+ + ++G G P NYV A
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWW-RARDKNGQEGYIPSNYVTEA 64
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
+AR +++ A ELSL+ E++T+ V D++W G G ++G P+TY+E +
Sbjct: 19 KARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP 78
Query: 79 PSG 81
SG
Sbjct: 79 SSG 81
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
A++ + P+++DELEL + + V + +D WY + R+G G FP Y
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYY 59
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
+ A++ + P+++DELEL + + V + +D WY + R+G G FP Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYY 56
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTY 70
SE RA F FV + EL L + + + + ++ W+E R G RG+FP Y
Sbjct: 2 SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGA-RGVFPAYY 56
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVM-EKC----DDGWYVGSSQRSGCFGTFP 146
T + PV + A+++Y+ D+EL LR G+ V V+ + C D+GW+ G SG G FP
Sbjct: 26 TPAGPV-WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTG-QLPSGRVGVFP 83
Query: 147 GNYV 150
NYV
Sbjct: 84 SNYV 87
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ D+EL + GE + V++ D W+ G + R G FP N+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGT--GLFPSNFV 57
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+ RA ++F A EL+ GEL+T++ D NW++G G+FP +V
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
ARA ++F A EL GE+V ++ + +W+ GR+ + G+FP YV R
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 59
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ +DEL R GE V V++ + W+ G G FP NYV
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 54
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ +DEL R GE V V++ + W+ G G FP NYV
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 53
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
ARA ++F A EL GE+V ++ + +W+ GR+ + G+FP YV R
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 58
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ +DEL R GE V V++ + W+ G G FP NYV
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 57
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
ARA ++F A EL GE+V ++ + +W+ GR+ + G+FP YV R
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 62
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+++ +DEL R GE V V++ + W+ G G FP NYV
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNK--LGLFPANYV 55
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76
ARA ++F A EL GE+V ++ + +W+ GR+ + G+FP YV R
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMMR 60
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC-FGTFPGNYV 150
A YNY + DEL L+ G+TV ++E +GWY G + R G FP +Y+
Sbjct: 16 AFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYI 65
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFP 67
R P K E A +N+ A+ ELSL G+ V ++ + W+ G R +++GIFP
Sbjct: 3 RWVPTKREEKYGVAFYNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSKKGIFP 61
Query: 68 VTYV 71
+Y+
Sbjct: 62 ASYI 65
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y++K DDEL + G+ + V+ E+CD WY ++ +G G P NY+E
Sbjct: 14 AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIE 63
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
+A AK++F A ELS +G+++ ++ D NW++ + + G P Y+E +
Sbjct: 11 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQQSRATPSG 81
R ++F +L KGE++ +I + + W+ R R G+ PV YVE+ R++P G
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188
Query: 82 APVDQTLHIDTHSDPVPYHA 101
++ + +++ P P HA
Sbjct: 189 KHGNR--NSNSYGIPEPAHA 206
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
LY++ + ++L ++GE + ++EK ++ W+ + + G G P YVE+
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWW-SARNKDGRVGMIPVPYVEK 180
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L+L G++V + R N +EG + R+G+FP T+V+
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVEQQSRATPSG 81
R ++F +L KGE++ +I + + W+ R R G+ PV YVE+ R++P G
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188
Query: 82 APVDQTLHIDTHSDPVPYHA 101
++ + +++ P P HA
Sbjct: 189 KHGNR--NSNSYGIPEPAHA 206
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
LY++ + ++L ++GE + ++EK ++ W+ + + G G P YVE+
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWW-SARNKDGRVGMIPVPYVEK 180
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L+L G++V + R N +EG + R+G+FP T+V+
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYV 150
T V ALY+Y+ Q DEL + G+ + ME D+ GW G +G G +P NYV
Sbjct: 424 TSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-NGQVGLYPANYV 482
Query: 151 E 151
E
Sbjct: 483 E 483
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGTRR- 63
P+D T+ +E + RA +++ Q H ELS G+ +T + D W +GR+ +
Sbjct: 418 PFDDDATSG---TEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 64 GIFPVTYVE 72
G++P YVE
Sbjct: 475 GLYPANYVE 483
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A+Y+++ D+EL + GE + V++ D W+ G + + G FP N+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG--IGLFPSNFV 69
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+ RA ++F A EL+ GE++T++ D NW++G G+FP +V
Sbjct: 19 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
L Q +A + + AQ ELS +++ +I+ + W+ GR+ ++G+FP YV +
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY Y Q+ DEL + + ++++ GW+ G + G G FP NYV +
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTG--RLRGKQGLFPNNYVTK 59
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVE 151
Y + NYK Q + EL L+ GE V V+EK + G W+V +S+ G P Y+E
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGW---VPATYLE 61
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 27 NFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
N+ Q + ELSL GE+V +I + ++ W+ +G P TY+E Q+ SG
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSSG 70
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 100 HALYNYKPQNDDELELREGETVFVM-----EKCDDGWYVGSSQR--------SGCFGTFP 146
A ++Y + DEL+L+ G+ V V+ E+ D+GW +G + C G FP
Sbjct: 146 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFP 205
Query: 147 GNYVER 152
N+ ER
Sbjct: 206 ENFTER 211
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A AKF++V ++ ELS KG + L R +W+EGR G+ P Y+
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 18 SEGQA-RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
S G+A R F FV +T EL ++ G +V ++++ ++NW ++G+ P Y+E S
Sbjct: 5 SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
+ L+ + P+ +EL++ G VFV++K +D W + +G G P NY+E S
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNW--ATVMFNGQKGLVPCNYLEPVS 63
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL++Y+ ++LE +EG+ + V+ K ++ W G S+ G G FP +VE ++
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
Q A F++ A +L +G+++ ++ +V+ W EG + GIFP +VE +
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
+L+ +GE + L+ + D W+ G IG R GIFP YV+ + SG
Sbjct: 24 DLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYVKPKDSGPSSG 69
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS-SQRSGCFGTFPGNYVE 151
Y ALY Y +L EGE + V +K D W+ GS RSG FP NYV+
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGI---FPSNYVK 60
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN--NWFEGRIGTRRGIFPVTYVEQQS 75
+ A ++F Q +L+ G+ +T+I + D+ +W+EG++ + GIFP YV S
Sbjct: 19 EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDD--GWYVGSSQRSGCFGTFPGNYVERA 153
P+ ALY+++ Q +L + G+ + V+ K D W+ G + G G FP NYV
Sbjct: 17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEG--KLRGQTGIFPANYVTMN 74
Query: 154 S 154
S
Sbjct: 75 S 75
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 100 HALYNYKPQNDDELELREGETVFVM-----EKCDDGWYVGSSQR--------SGCFGTFP 146
A ++Y + DEL+L+ G+ V V+ E+ D+GW +G + C G FP
Sbjct: 48 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 107
Query: 147 GNYVERA 153
N+ ER
Sbjct: 108 ENFTERV 114
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASL 155
ALY+Y DEL + G+ + V K ++ W+ GS + G G FP N+V +L
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHVASETL 64
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 100 HALYNYKPQNDDELELREGETVFVM-----EKCDDGWYVGSSQR--------SGCFGTFP 146
A ++Y + DEL+L+ G+ V V+ E+ D+GW +G + C G FP
Sbjct: 14 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFP 73
Query: 147 GNYVERA 153
N+ ER
Sbjct: 74 ENFTERV 80
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRV---DNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
+A +++ QT ELS +G ++ ++ + D+ ++EG R G+FP VE+ S
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPS 71
Query: 80 SG 81
SG
Sbjct: 72 SG 73
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK---CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ Q DDEL EG + ++ K DDG++ G + +G G FP VE S
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEG--EFNGRIGVFPSVLVEELS 67
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 57
Query: 82 APVD 85
APVD
Sbjct: 58 APVD 61
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ + ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 1 MTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYV 71
A +++ ++T +LS KGE + ++ + +W+ T R G P YV
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 55
Query: 82 APVD 85
APVD
Sbjct: 56 APVD 59
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 57
Query: 82 APVD 85
APVD
Sbjct: 58 APVD 61
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 33/50 (66%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ +G R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKK 60
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWY---VGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ VG Q G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQ-----GFVPAAYVKK 60
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQ--------- 74
F F + +L +GE + ++ + + +W+E R +GT G+ P YV+ Q
Sbjct: 154 FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT-TGLVPANYVQIQMEFHNDRTS 212
Query: 75 -----SRATPSGAPVDQTLHIDTHSD--------PVPYHALYNYKPQNDDELELR--EGE 119
S SG ++ T SD P ++ P D +LR +G+
Sbjct: 213 KGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQ 272
Query: 120 TVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
TV V +K +G Y ++ G G+ P Y+
Sbjct: 273 TVLVTQKMSNGMY--KAELDGQIGSVPHTYL 301
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 55
Query: 82 APVD 85
APVD
Sbjct: 56 APVD 59
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYV 71
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 59
Query: 82 APVD 85
APVD
Sbjct: 60 APVD 63
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGTRRGIFPVTYVEQQS 75
+A AK +F A ELS KG+++ ++ D+ NW+ + + G+ P Y+E ++
Sbjct: 2 EAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKN 57
Score = 33.1 bits (74), Expect = 0.097, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVE 151
A +++ DDEL R+G+ + ++ DD WY ++ G G P NY+E
Sbjct: 5 AKHDFSATADDELSFRKGQILKILNMEDDSNWY--RAELDGKEGLIPSNYIE 54
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 59
Query: 82 APVDQ 86
APVD
Sbjct: 60 APVDS 64
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 58
Query: 82 APVD 85
APVD
Sbjct: 59 APVD 62
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P YV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 58
Query: 82 APVD 85
APVD
Sbjct: 59 APVD 62
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 34/54 (62%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++ + A
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA 75
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASLA 156
ALY+Y+ ++ E+ +++G+ + ++ + D W V + R G P YV++ + A
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGF---VPAAYVKKLAAA 75
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 17 LSEGQARAKFNFVAQTHLE-LSLVKGELVTLIRRVDNNWFEG-RIGTRRGIFPVTYVE 72
+S + R + F + H + L GEL+TL++ D W+EG + RG FP +YV+
Sbjct: 1 MSGARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 102 LYNYKPQNDDE-LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
LY + + + L GE + +++ D GW+ G + G G FP +YV+
Sbjct: 9 LYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKE-DGLRGWFPASYVQ 58
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 12/62 (19%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDG----WYVGSSQRSGCFGTFPGNYVERASL 155
+AL++Y+PQNDDEL ++EG+ + ++ + D+ W+ + + G YV R L
Sbjct: 174 YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEG--------YVPRNLL 225
Query: 156 AL 157
L
Sbjct: 226 GL 227
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 12/62 (19%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDG----WYVGSSQRSGCFGTFPGNYVERASL 155
+AL++Y+PQNDDEL ++EG+ + ++ + D+ W+ + + G YV R L
Sbjct: 174 YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEG--------YVPRNLL 225
Query: 156 AL 157
L
Sbjct: 226 GL 227
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
V ALY+Y Q DEL + G+ + + E+ + GW G SG G +P NYVE
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-SGQLGLYPANYVE 58
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
T ++ V A ++Y Q + EL++++ E +++++ W V +S F P NYVE
Sbjct: 3 TMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGF--VPSNYVE 60
Query: 152 RASLA 156
R + A
Sbjct: 61 RKNSA 65
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSG 81
AKF++VAQ EL + K E + L+ + W + G P YVE+++ A +
Sbjct: 12 AKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSARAAA 69
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG---TRRGIFPVTYVEQQSRA 77
+ + ++ A EL+ ++GE++ + D W+ G I R+G+FPV++V S +
Sbjct: 12 RVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDS 71
Query: 78 TPS 80
PS
Sbjct: 72 GPS 74
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYV----GSSQRSGCF 142
+Y+ + NDDEL EGE + V + D W++ G +R G F
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVF 60
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL++Y+P +D +L +GE + ++E+ + W+ S +G G P N+V +A+
Sbjct: 5 ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN 57
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL++YK Q +DEL + + +EK D GW+ G FP NYVE
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQL-WFPSNYVE 60
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYV 71
A +++ A T +LS KGE ++ + +W+E R T G P YV
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL++Y+P +D +L +GE + ++E+ + W+ S +G G P N+V +A+
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN 63
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
AL++Y+P +D +L +GE + ++E+ + W+ S +G G P N+V +A
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 77 ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
+ P +P+ L I AL++Y+P +D +L +GE + ++E+ + W+ S
Sbjct: 3 SNPPASPLQDNLVI----------ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQS 51
Query: 137 QRSGCFGTFPGNYVERAS 154
+G G P N+V +A+
Sbjct: 52 LTTGQEGFIPFNFVAKAN 69
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 36.6 bits (83), Expect = 0.009, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL++YK Q +DEL + + +EK D GW+ G FP NYVE
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQL-WFPSNYVE 57
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVM-------------EKCDD--GWYVGSSQRSGCFG 143
Y ALY ++ + ++LEL G+ + V E+C GW G ++R+ G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 74 DFPGTYVE 81
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 25 KFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
++++ A EL++ GE++ ++++ + W EG + RRG+FP +V++ R T
Sbjct: 7 EYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE 151
V Y Y+Y +DDEL +R GE + ++K ++GW G + +G G FP N+V+
Sbjct: 2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVK 55
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A T +LS KGE ++ + +W+E R T G P YV
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 54
Query: 82 APVD 85
APVD
Sbjct: 55 APVD 58
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 77 ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
+ P +P+ L I AL++Y+P +D +L +GE + ++E+ + W+ S
Sbjct: 3 SNPPASPLQDNLVI----------ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQS 51
Query: 137 QRSGCFGTFPGNYVERAS 154
+G G P N+V +A+
Sbjct: 52 LTTGQEGFIPFNFVAKAN 69
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL++Y+P +D +L +GE + ++E+ + W+ S +G G P N+V +A+
Sbjct: 9 ALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKAN 61
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEG--RIGTRRGIFPVTYVEQQ 74
AK+NF +L KG+++T++ D NW++ ++G R GI P YV+++
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYVQKR 68
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A T +LS KGE ++ + +W+E R T G P YV
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 69
Query: 82 APVD 85
APVD
Sbjct: 70 APVD 73
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVM-------------EKCDD--GWYVGSSQRSGCFG 143
Y ALY ++ + ++LEL G+ + V E+C GW G ++R+ G
Sbjct: 9 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 68
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 69 DFPGTYVE 76
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 36.2 bits (82), Expect = 0.013, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 33/50 (66%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P +YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKK 60
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + D W V + R G P +YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPASYVKK 60
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEG--RIGTRRGIFPVTYVEQQ 74
AK+NF +L KG+++T++ D NW++ ++G R GI P YV+++
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYVQKR 68
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKK 60
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ ++ +G G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KTEVNGRQGFVPAAYVKK 60
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE 151
V Y Y+Y +DDEL +R GE + ++K ++GW G + +G G FP N+V+
Sbjct: 1 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEG--ELNGRRGMFPDNFVK 54
Score = 33.9 bits (76), Expect = 0.050, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 25 KFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRGIFPVTYVEQ 73
++++ A EL++ GE++ ++++ + W EG + RRG+FP +V++
Sbjct: 6 EYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 55
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ +D+L +GE ++ + W+ S +G G P NYV
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A T +LS KGE ++ + +W+E R T G P YV
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV---------- 69
Query: 82 APVD 85
APVD
Sbjct: 70 APVD 73
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+ +Y ++ +L GE + ++ + W+ G +R+GC G P N+V + S
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHVGKHS 63
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 27 NFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
++ A +LS ++GE + ++R+ +W+ G G P +V + S
Sbjct: 15 DYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
++ V A ++Y Q D EL++++ E +++++ W V ++ + G P NYVER
Sbjct: 2 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA--ANRTGYVPSNYVER 58
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 35.8 bits (81), Expect = 0.017, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
+A AK +F A ELS +G+++ ++ D NW++ + + G P Y+E +
Sbjct: 2 EAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 35.4 bits (80), Expect = 0.018, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKK 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 35.4 bits (80), Expect = 0.018, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 35.4 bits (80), Expect = 0.018, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-----RGIFPVTYVE 72
A+ +VA +LSL G+L+ ++++ + W++G + R +G FP ++V+
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 35.4 bits (80), Expect = 0.019, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKK 55
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ + +G G P YV++
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNGRQGFVPAAYVKK 55
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
E+++ KG+++TL+ + +W++ + R+G P YV++ T
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 58
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 35.4 bits (80), Expect = 0.022, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+++ ++ EL++ KG+++TL+ + +W++ + R+G P Y+++
Sbjct: 13 YDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKK 60
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
A ++Y Q D EL++++ E +++++ W V ++ + G P NYVER
Sbjct: 36 AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA--ANRTGYVPSNYVER 85
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEG--RIGTRRGIFPVTYVEQQ 74
AK+NF +L KG+++T++ D NW++ ++G R GI P YV+++
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYVQKR 68
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
E+++ KG+++TL+ + +W++ + R+G P YV++ T
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 50
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A A F + +T ELS +G+++ L R ++W+ G RG+ P Y+
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A + Y + EL R G+ + + E+ W+ G + +G G P Y+
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRG--EHNGMRGLIPHKYI 62
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 35.0 bits (79), Expect = 0.026, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Score = 26.6 bits (57), Expect = 9.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + D W V + R G P YV++
Sbjct: 11 ALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPAAYVKK 60
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 35.0 bits (79), Expect = 0.027, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 55
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ DE+ +++G+ + ++ + D W V + R G P YV++
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPAAYVKK 55
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 102 LYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
L+ Y N+DEL REGE + ++ K + GW+ G + +G G FP N+ + S
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKG--ELNGKEGVFPDNFAVQIS 64
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQS 75
R F + EL+ +GE++ LI + + W++G + + G+FP + Q S
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS 64
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 35.0 bits (79), Expect = 0.027, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKK 60
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 35.0 bits (79), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ DE+ +++G+ + ++ + D W V + R G P YV++
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPAAYVKK 60
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 35.0 bits (79), Expect = 0.028, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKK 60
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + D W V + R G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPAGYVKK 60
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 34.7 bits (78), Expect = 0.029, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A +++ + E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 55
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ + D E+ +++G+ + ++ + D W V + R G P YV++
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQ---GFVPAAYVKK 55
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
+ ALY+Y+ + ++L ++GE ++ + W+ S +G G P NYV A
Sbjct: 8 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPA 62
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGT-RRGIFPVTYV 71
A +++ A+T +LS KGE +I + +W+E R I T + G P YV
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156
ALY ++ + D+ L + + + V+E+ D W+ G Q G G FP +YV+ S A
Sbjct: 16 QALYPWRAKKDNHLNFNKNDVITVLEQ-QDMWWFGEVQ--GQKGWFPKSYVKLISAA 69
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
QA+A + + A+ L+ K +++T++ + D WF G + ++G FP +YV+ S A
Sbjct: 14 QAQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVKLISAAA 70
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ ++ V A ++Y Q + EL++++ E +++++ W V +S F P NYVE
Sbjct: 2 SMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGF--VPSNYVE 59
Query: 152 RAS 154
R +
Sbjct: 60 RKN 62
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
AKF++VAQ EL + K E + L+ + W + G P YVE+++
Sbjct: 11 AKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN 62
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-RGIFPVTYVEQQS 75
+A +++ A+ EL+ +G L+ + + W++G GTR + FP YVE S
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT-----FPGNYVERAS 154
ALY+YK + DEL G + + K GW+ G +GT FP NYVE S
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGD------YGTRIQQYFPSNYVEDIS 64
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 34.7 bits (78), Expect = 0.033, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
E+++ KG+++TL+ + +W++ + R+G P YV++ T
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT 48
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQRSGCFG 143
Y ALY+YK + +++++L G+ + V + + GW G ++ +G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 68 DFPGTYVE 75
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 34.7 bits (78), Expect = 0.034, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGTRRGIFPVTYVEQQS 75
+A AK +F A ELS K +++ ++ D+ NW+ + + G+ P Y+E ++
Sbjct: 2 EAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKN 57
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQRSGCFG 143
Y ALY+YK + +++++L G+ + V + + GW G ++ +G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 68 DFPGTYVE 75
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ ++ Q +L ++GE + V+EK DGW++ + G G P Y+E
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTYLE 64
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 27 NFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSR 76
+F AQ +L+ KGE++ +I + + W+ + G+ P TY+E S
Sbjct: 18 DFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQRSGCFG 143
Y ALY+YK + +++++L G+ + V + + GW G ++ +G G
Sbjct: 10 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGERG 69
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 70 DFPGTYVE 77
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + ++L ++GE ++ + W+ S +G G P NYV
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGT-RRGIFPVTYV 71
A +++ A+T +LS KGE +I + +W+E R I T + G P YV
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A A ++ V + EL+ G+++ ++ + +W+ G+I G FP ++V
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 34.3 bits (77), Expect = 0.042, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+++ ++ EL++ KG+++TL+ + +W++ + R+G P Y+++
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKK 60
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A+A ++ A+ L+ K +++T++ + +N WF G + RG FP +YV+
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 62
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 34.3 bits (77), Expect = 0.044, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+++ ++ EL++ KG+++TL+ + +W++ + R+G P Y+++
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + +D+L +GE ++ + W+ S +G G P Y+
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P Y+
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL---------- 59
Query: 82 APVDQ 86
APVD+
Sbjct: 60 APVDR 64
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKC---------------DDGWYVGSSQRSGCFG 143
Y ALY+YK + +++++L G+ + V + + GW G ++ +G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 144 TFPGNYVE 151
FPG YVE
Sbjct: 68 DFPGTYVE 75
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVERAS 154
+Y+ + NDDEL EGE + V + D W++G + + G FP ++V S
Sbjct: 6 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 60
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG---TRRGIFPVTYV 71
+ + ++ A EL+ ++GE++ + D W+ G I R+G+FPV++V
Sbjct: 3 RVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A+A +F EL K +++T+I + D + + G + RG FP +VE
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL +++ +DDEL R+ + + ++ + D+ +VG + +G G FP +VE
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVG--ELNGLRGWFPAKFVE 60
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL++YK Q +DEL + + +EK + GW+ G FP NYVE
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQL-WFPSNYVE 60
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGTRRGIFPVTYVEQQSRATPSG 81
RA F+F +L KG+++ + + + W+ + +RG+ PV YVE + PS
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVE---KCRPSS 61
Query: 82 APV 84
A V
Sbjct: 62 ASV 64
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
AL+++ +D++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWW-NAEDMDGKRGMIPVPYVEKC 57
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
L+L GELV + + + +EG +RG FP T+V
Sbjct: 123 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHV 158
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A A ++ V EL G+++ ++ + W+ GR+ G FP ++V
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
V AL+++ +D EL + G+ + VM+ + W+ G + + G FP ++V
Sbjct: 37 VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWG--RVADGEGWFPASFV 88
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYVERASL 155
LY +K + DDEL++ GE + + D W++ R G G P +YV L
Sbjct: 9 LYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDL 63
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 33.5 bits (75), Expect = 0.082, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 31/48 (64%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+++ ++ E+++ KG+++TL+ + +W++ + R+G P Y+++
Sbjct: 13 YDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKK 60
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y+ + +D+L +GE ++ + W+ S +G G P Y+
Sbjct: 10 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPSG 81
A +++ A+T +LS KGE ++ + +W+E R T G P Y+
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL---------- 61
Query: 82 APVDQ 86
APVD+
Sbjct: 62 APVDR 66
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y + D+L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 33.1 bits (74), Expect = 0.094, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 31/48 (64%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
+++ ++ E+++ KG+++TL+ + +W++ + R+G P Y+++
Sbjct: 13 YDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKK 60
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A + F A EL G+ + ++ +++ W EG + R GIFP +V+
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVK 66
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY ++ +EL+ G+ + ++ +DGW GS + G G FP +V+
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLK--GRTGIFPYRFVK 66
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L+L G++V + R N +EG + R+G+FP T+V+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY+Y + D+L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 8 ALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATPS 80
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+ A+ S
Sbjct: 18 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASAS 76
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 18 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 69
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 5 ALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 55
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNY 149
A+Y Y+ Q DDE+ + G+ + V+ D GW G G G FP +Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC--DGLKGLFPTSY 52
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
S+ + ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 7 SEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 64
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L+L G++V + R N +EG + R+G+FP T+V+
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 7 ALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 58
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVME-KCDDGWYVGSSQRSGCFGTFPGNYV 150
+ P AL ++ + D+L ++ + + V+E + ++ W+ G + R+ C G FP N V
Sbjct: 276 AQPTDMRALQDF--EEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVV 331
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 30 ALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 80
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 63
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATPSG 81
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+ A+ S
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 82 APVDQTLHIDTHSDPV 97
+ + +H P+
Sbjct: 198 SALIGGNQEGSHPQPL 213
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 189
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
L+L GELV + + + +EG +RG FP T+V + P
Sbjct: 256 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 58
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 56
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 56
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ + ++L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 14 ALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 64
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 103 YNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y++ ++ DEL ++ G+ V+++ +K W++ SG G P ++E
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF-GTFPGNYVERASLALRW 159
A+YN++ +L L+ G+ V + E C D WY G + G FP +++ + +
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKXLQGIFPKSFIHIKEVTVEK 80
Query: 160 VENASKLI 167
N +I
Sbjct: 81 RRNTENII 88
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATPS 80
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+ A+ S
Sbjct: 140 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASAS 198
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 191
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATPS 80
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+ A+ S
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASAS 196
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 189
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQ 74
F F + +L +GE + ++ + + +W+E R +GT G+ P YV+ Q
Sbjct: 125 FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT-TGLVPANYVQIQ 174
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
A+Y+++ +L L G+ ++EK D W+ + + G G P NYV
Sbjct: 7 AMYDFQATEAHDLRLERGQEYIILEKNDLHWWR-ARDKYGSEGYIPSNYV 55
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVE 151
ALY+ ++ DEL R+G+ + V+E+ DGW++ S G G PGN ++
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD---NNWFEGRIGTRRGIFP 67
A+A ++ VA++ ELS KG+++T++ + + W+ + R+GI P
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVP 54
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKC----DDGWYVGSSQRSG-----CFGTFP 146
+AL++Y + DEL REGE+V V+ + D W+ + G FG FP
Sbjct: 158 YALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVEQ 73
++ G A +++ A+ ELS +GE VT++RR + +W+ + + G P Y
Sbjct: 152 MNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211
Query: 74 QSRATPSGAPV 84
R P + V
Sbjct: 212 FPRVKPQRSKV 222
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYV 150
Y L+++K + D+EL R G+ V K + W+ +G G P NY+
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67
>pdb|2RQR|A Chain A, The Solution Structure Of Human Dock2 Sh3 Domain - Elmo1
Peptide Chimera Complex
Length = 119
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF-GTFPGNYVE 151
A+YN++ +L L+ G+ V + E C D WY G + G FP +++
Sbjct: 64 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH 114
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 31.2 bits (69), Expect = 0.41, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 103 YNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y++ ++ DEL ++ G+ V+++ +K W++ SG G P ++E
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
G RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 2 GYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 27.7 bits (60), Expect = 3.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 56
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFE--------GRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ G+ R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVKK 68
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTL-IRRVDNNWFEGRIGTRRGIFPVTYV 71
+P+ +A +N V+ T L L + +++T+ + +N WF G++ + G FPV +V
Sbjct: 6 SPEFAKYARALKDYN-VSDTSL-LPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
Query: 72 E 72
E
Sbjct: 64 E 64
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 111 DELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
DE+ L++ + V V+++ +DGW G R G G FP ++
Sbjct: 32 DEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFA 70
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y +L +GE ++E W+ S +G G P NYV
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYV 150
LY + ++EL +GET+ V+EK D W+ + R G G P NYV
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYV 72
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
P+ +Y+YK DEL + E E + V+E D +V + + G G P Y++
Sbjct: 13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYV 150
LY + ++EL +GET+ V+EK D W+ + R G G P NYV
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYV 61
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY Y + D+L ++GE + V+E+ + W+ S + G P NYV +
Sbjct: 12 ALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVAK 62
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYV-------GSSQRSGCFGTFPGNYVERA 153
AL++Y+ + ++L R G+ + V++ +GW++ G+ G P NYV
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED 71
Query: 154 S 154
S
Sbjct: 72 S 72
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYV 150
LY + ++EL +GET+ V+EK D W+ + R G G P NYV
Sbjct: 6 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYV 57
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFE--------GRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ G+ R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 68
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFE--------GRIGTRRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ G+ R+G P YV++
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ ALY+Y +L +GE +++ W+ S +G G P NYV
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYV 60
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A A ++ V EL G+++ ++ + W+ GR+ G FP ++V
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
V AL+++ +D EL + G+ + VM+ + W+ G + G FP ++V
Sbjct: 31 VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV--ADGEGWFPASFV 82
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 28 FVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ +Q+ E+ KG V +IR+ W+ R + G P +Y+++ + PS
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPS 69
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
Y + Y Q+ DE+ +G TV V+ K +GW+ + G G P +Y+++A
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWY--IRYLGKEGWAPASYLKKA 63
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ +DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 39 SENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 96
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ +DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 36 SENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 93
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ +DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 78 SENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 135
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 2 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 57
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFP 146
A+Y ++P+ DE+ + G+ + V DG+ G +++ G G +P
Sbjct: 447 AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYP 492
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
Score = 27.7 bits (60), Expect = 4.0, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 55
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ + G G P YVE+
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW-NAEDSEGKRGMIPVPYVEK 58
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 109 NDDELELREGETV-FVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
N L +EG+ + ++ + DGW+ G S+++ G FP +Y
Sbjct: 21 NSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
A A ++ V EL G+++ + + W+ GR+ G FP ++V
Sbjct: 70 AEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 6 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 61
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--------RRGIFPVTYVEQ 73
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVKK 68
>pdb|2RQV|A Chain A, Solution Structure Of Sh3ci Domain Of Bem1p
Length = 108
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYVERASLA 156
LY++K + DEL GE +F+ + W++ R G G P +V +A
Sbjct: 11 LYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
DP + ALY++ D+ L + +GE + V+ +G + + ++G G P NY+
Sbjct: 1 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSNYI 55
>pdb|2RQW|A Chain A, Solution Structure Of Bem1p Sh3ci Domain Complexed With
Ste20p-Prr Peptide
Length = 105
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS-QRSGCFGTFPGNYVERASLA 156
LY++K + DEL GE +F+ + W++ R G G P +V +A
Sbjct: 8 LYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 63
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVE 72
+A+A + A+ ELS G + + + W EG + + G+ P YVE
Sbjct: 12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 50 VDNNWFEGRIGTRRGIFPVTYV--EQQSRATPSGAPVDQTLHIDTHSDPV 97
VDN R+G+R+ Y+ +Q A +GAP++Q L + SDPV
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPV 492
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ + EL LR E +++ + W+ R+G G P +Y+ S
Sbjct: 13 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWW-RVQDRNGHEGYVPSSYLVEKS 65
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 91 DTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ S + LY ++ +N EL + +GE + V++ W V +G G P N +
Sbjct: 2 SSGSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLV--KNEAGRSGYIPSNIL 59
Query: 151 E 151
E
Sbjct: 60 E 60
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
ALY+Y +L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 8 ALYDYYSPFSWDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 97 VPYH--ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYV 150
VP+ A + YK +D+L + + + V D WY G Q S G FP ++V
Sbjct: 6 VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDN----NWFEGRI-GTRRGIFPVTYVE 72
ARA+++FVA + E+S G+++ L + W + G G+ P YV+
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVK 75
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of
C-Crkii
Length = 76
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
L+L GELV + + + +EG +RG FP T+V + P
Sbjct: 28 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 71
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 20 GQARAKFNFVAQTHL--ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
G+AR +F + L L KG+++ +I + + G + + G F YV+ S
Sbjct: 10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSG 69
Query: 78 TPSG 81
SG
Sbjct: 70 PSSG 73
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 97 VPYH--ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYV 150
VP+ A + YK +D+L + + + V D WY G Q S G FP ++V
Sbjct: 7 VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 65
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + EL LR E +++ + W+ R+G G P +Y+
Sbjct: 24 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWR-VQDRNGHEGYVPSSYL 72
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 102 LYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
LY++ +N +EL + + E + V+E W + S RSG G P N + AS
Sbjct: 13 LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILGEAS 63
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 102 LYNYKPQNDDELELREGETV-FVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
LY Y ++DDE+ + G+ + V GW ++ +G G P Y+
Sbjct: 7 LYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
L+L GELV + + + +EG +RG FP T+V
Sbjct: 38 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHV 73
>pdb|4DN2|A Chain A, Crystal Structure Of Putative Nitroreductase From
Geobacter Metallireducens Gs-15
pdb|4DN2|B Chain B, Crystal Structure Of Putative Nitroreductase From
Geobacter Metallireducens Gs-15
Length = 208
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 64 GIFPVTYVEQQSRATPSGAPVDQTLH 89
G+FP+ Y + +A PS P+D+ +H
Sbjct: 177 GLFPLGYPLEGPKAGPSRKPLDEIVH 202
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+DP + ALY++ D+ L + +GE + V+ +G + + ++G G P Y+
Sbjct: 3 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSTYI 58
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + EL LR E ++++ + W+ ++G G P +Y+
Sbjct: 25 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWW-RVQDKNGHEGYAPSSYL 73
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+DP + ALY++ D+ L + +GE + V+ +G + + ++G G P Y+
Sbjct: 3 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQ-GWVPSQYI 58
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ + EL LR E ++++ + W+ ++G G P +Y+ S
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWW-RVQDKNGHEGYAPSSYLVEKS 62
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
L+L GELV + + + +EG +RG FP T+V
Sbjct: 25 LALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ + EL LR E ++++ + W+ ++G G P +Y+ S
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWW-RVQDKNGHEGYAPSSYLVEKS 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,019,043
Number of Sequences: 62578
Number of extensions: 249831
Number of successful extensions: 1077
Number of sequences better than 100.0: 295
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 495
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)