Query psy15854
Match_columns 191
No_of_seqs 146 out of 1847
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 23:04:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4226|consensus 99.8 5.2E-21 1.1E-25 147.9 9.3 136 21-157 109-253 (379)
2 KOG4225|consensus 99.8 6.5E-19 1.4E-23 143.8 9.3 132 21-152 232-488 (489)
3 KOG4348|consensus 99.8 2.5E-19 5.4E-24 146.3 6.0 138 18-157 99-322 (627)
4 KOG1029|consensus 99.8 5.8E-19 1.3E-23 152.2 5.7 123 21-153 981-1108(1118)
5 KOG4226|consensus 99.7 1.1E-17 2.3E-22 129.6 10.8 133 21-156 6-165 (379)
6 KOG4348|consensus 99.7 1.5E-18 3.2E-23 141.8 0.9 134 21-156 3-158 (627)
7 KOG4792|consensus 99.7 1.4E-16 3.1E-21 120.3 8.4 137 19-157 124-288 (293)
8 KOG1029|consensus 99.6 1.5E-15 3.3E-20 131.4 7.7 133 20-157 906-1043(1118)
9 PF14604 SH3_9: Variant SH3 do 99.4 4.9E-13 1.1E-17 79.4 5.3 49 24-72 1-49 (49)
10 PF14604 SH3_9: Variant SH3 do 99.4 7.2E-13 1.6E-17 78.7 5.5 49 101-151 1-49 (49)
11 PF07653 SH3_2: Variant SH3 do 99.3 7.3E-12 1.6E-16 76.3 5.8 54 98-153 1-55 (55)
12 PF07653 SH3_2: Variant SH3 do 99.3 1.5E-11 3.2E-16 74.9 5.5 53 21-73 1-54 (55)
13 PF00018 SH3_1: SH3 domain; I 99.2 5.7E-11 1.2E-15 70.2 5.6 48 100-147 1-48 (48)
14 KOG2070|consensus 99.1 6E-11 1.3E-15 99.0 4.9 67 95-163 16-82 (661)
15 PF00018 SH3_1: SH3 domain; I 99.1 3.8E-10 8.3E-15 66.6 5.4 46 23-68 1-48 (48)
16 KOG2070|consensus 99.1 1.2E-10 2.7E-15 97.1 4.2 59 21-79 19-77 (661)
17 smart00326 SH3 Src homology 3 99.0 1.4E-09 3E-14 66.0 6.9 55 98-153 4-58 (58)
18 KOG3632|consensus 99.0 5.4E-10 1.2E-14 99.6 6.7 135 19-157 1138-1311(1335)
19 cd00174 SH3 Src homology 3 dom 99.0 2.3E-09 5E-14 64.2 7.1 52 99-151 2-53 (54)
20 KOG2996|consensus 99.0 7.5E-10 1.6E-14 94.2 6.5 54 99-154 808-863 (865)
21 KOG1118|consensus 99.0 4.2E-10 9.1E-15 89.0 3.7 57 20-76 307-363 (366)
22 smart00326 SH3 Src homology 3 98.9 4.5E-09 9.8E-14 63.7 6.2 53 21-73 4-57 (58)
23 KOG2199|consensus 98.9 3.8E-10 8.3E-15 92.0 1.6 58 18-75 214-271 (462)
24 cd00174 SH3 Src homology 3 dom 98.9 6E-09 1.3E-13 62.3 6.5 51 22-72 2-53 (54)
25 KOG2199|consensus 98.9 4E-10 8.8E-15 91.9 1.4 58 95-154 214-271 (462)
26 KOG0162|consensus 98.8 5E-09 1.1E-13 91.3 5.6 55 20-74 1052-1106(1106)
27 KOG3601|consensus 98.8 1.5E-09 3.2E-14 81.8 1.6 131 22-154 3-219 (222)
28 KOG1118|consensus 98.7 9.6E-09 2.1E-13 81.4 3.3 56 97-154 307-362 (366)
29 KOG4225|consensus 98.7 2.3E-08 5.1E-13 82.6 4.7 58 98-157 232-289 (489)
30 KOG0162|consensus 98.6 5E-08 1.1E-12 85.3 5.0 54 98-153 1053-1106(1106)
31 KOG2546|consensus 98.5 2.9E-08 6.4E-13 81.7 2.0 54 99-154 426-479 (483)
32 KOG2856|consensus 98.5 2.9E-08 6.3E-13 80.4 0.5 56 97-153 415-471 (472)
33 KOG4792|consensus 98.4 1.5E-07 3.3E-12 71.8 2.7 60 97-157 125-184 (293)
34 KOG2856|consensus 98.4 7.1E-08 1.5E-12 78.2 0.8 55 20-74 415-471 (472)
35 KOG1264|consensus 98.4 2.1E-07 4.5E-12 82.3 3.0 59 19-77 774-833 (1267)
36 KOG1264|consensus 98.3 3.5E-07 7.6E-12 80.9 3.6 62 95-157 773-834 (1267)
37 KOG0515|consensus 98.3 3.5E-07 7.7E-12 77.6 3.0 58 19-76 683-743 (752)
38 KOG2546|consensus 98.3 3E-07 6.5E-12 75.9 2.5 55 21-75 425-479 (483)
39 KOG1702|consensus 98.2 1.4E-06 3.1E-11 65.5 4.6 60 94-153 205-264 (264)
40 KOG0515|consensus 98.2 5.8E-07 1.3E-11 76.3 2.1 55 98-154 685-742 (752)
41 KOG2996|consensus 98.2 1.9E-06 4.2E-11 73.9 4.1 55 21-75 807-863 (865)
42 KOG1702|consensus 98.1 2.6E-06 5.7E-11 64.1 4.1 58 16-73 204-263 (264)
43 KOG3875|consensus 97.9 1.7E-06 3.7E-11 68.9 -0.6 60 97-156 269-333 (362)
44 KOG4278|consensus 97.9 1.4E-05 3.1E-10 69.9 4.8 57 97-155 91-148 (1157)
45 KOG3655|consensus 97.9 4.6E-06 9.9E-11 70.0 1.4 55 20-74 428-483 (484)
46 KOG3523|consensus 97.9 1.7E-06 3.6E-11 74.5 -1.7 62 96-157 608-669 (695)
47 KOG3601|consensus 97.8 1.2E-05 2.6E-10 61.0 2.9 58 17-74 161-218 (222)
48 KOG3655|consensus 97.8 7.4E-06 1.6E-10 68.7 1.5 57 96-153 427-483 (484)
49 KOG1843|consensus 97.8 1.3E-05 2.7E-10 66.3 2.4 55 19-73 416-472 (473)
50 KOG1843|consensus 97.6 4E-05 8.7E-10 63.3 2.3 55 96-152 416-472 (473)
51 KOG3875|consensus 97.6 1.4E-05 3.1E-10 63.8 -0.4 56 21-76 270-332 (362)
52 KOG2528|consensus 97.5 8.4E-05 1.8E-09 62.1 2.9 59 98-157 4-63 (490)
53 KOG3523|consensus 97.4 2.4E-05 5.2E-10 67.6 -0.7 57 21-77 610-668 (695)
54 KOG4278|consensus 97.4 0.00047 1E-08 60.7 6.9 56 21-76 92-148 (1157)
55 KOG3557|consensus 97.2 0.00031 6.7E-09 61.3 3.1 60 96-157 500-559 (721)
56 KOG3775|consensus 97.1 0.00022 4.7E-09 58.5 1.8 59 99-157 265-323 (482)
57 KOG2222|consensus 97.0 0.00014 3.1E-09 61.6 -0.3 56 21-76 550-605 (848)
58 KOG3632|consensus 97.0 0.00069 1.5E-08 61.7 3.8 58 98-157 1140-1206(1335)
59 KOG4773|consensus 97.0 0.00012 2.6E-09 59.4 -0.9 56 21-76 177-232 (386)
60 KOG2222|consensus 96.9 0.00015 3.3E-09 61.4 -0.7 58 97-156 549-606 (848)
61 KOG2528|consensus 96.8 0.00054 1.2E-08 57.4 1.2 57 21-77 4-62 (490)
62 KOG3557|consensus 96.5 0.0012 2.5E-08 57.8 1.7 59 18-77 499-558 (721)
63 KOG0197|consensus 96.4 0.00088 1.9E-08 57.2 0.1 56 98-153 13-69 (468)
64 KOG1451|consensus 96.2 0.0078 1.7E-07 52.4 5.0 54 21-74 758-812 (812)
65 KOG4773|consensus 96.2 0.00051 1.1E-08 55.9 -2.2 55 98-154 177-231 (386)
66 KOG4575|consensus 96.2 0.0085 1.8E-07 52.6 4.8 58 96-153 8-65 (874)
67 KOG3775|consensus 96.0 0.0036 7.9E-08 51.6 1.8 56 22-77 265-322 (482)
68 KOG0609|consensus 96.0 0.0032 7E-08 54.1 1.5 54 20-73 215-280 (542)
69 PF14603 hSH3: Helically-exten 95.9 0.016 3.4E-07 38.0 4.2 45 109-154 29-73 (89)
70 KOG0197|consensus 95.9 0.0037 8.1E-08 53.4 1.4 56 19-74 11-69 (468)
71 KOG1451|consensus 95.8 0.012 2.5E-07 51.4 4.2 56 96-153 756-812 (812)
72 KOG3725|consensus 95.8 0.003 6.5E-08 49.6 0.7 56 19-74 317-374 (375)
73 KOG3725|consensus 95.6 0.0043 9.4E-08 48.7 0.8 56 96-153 317-374 (375)
74 PF14603 hSH3: Helically-exten 95.4 0.032 6.8E-07 36.6 4.1 44 32-75 29-73 (89)
75 KOG3771|consensus 95.2 0.016 3.5E-07 49.1 2.7 52 20-71 401-453 (460)
76 KOG4429|consensus 95.1 0.0064 1.4E-07 48.6 0.3 54 98-153 365-418 (421)
77 KOG0609|consensus 95.1 0.0075 1.6E-07 52.0 0.6 60 96-155 214-283 (542)
78 KOG4575|consensus 94.8 0.045 9.8E-07 48.2 4.5 54 21-74 10-65 (874)
79 KOG4429|consensus 94.4 0.033 7.1E-07 44.7 2.7 54 21-74 365-418 (421)
80 KOG0199|consensus 94.3 0.055 1.2E-06 48.7 4.1 54 99-152 377-431 (1039)
81 PF08239 SH3_3: Bacterial SH3 94.3 0.1 2.2E-06 30.9 4.1 37 114-151 18-55 (55)
82 KOG3771|consensus 93.7 0.03 6.5E-07 47.6 1.3 52 98-151 402-454 (460)
83 PF08239 SH3_3: Bacterial SH3 93.4 0.2 4.2E-06 29.6 4.3 36 37-72 18-55 (55)
84 smart00287 SH3b Bacterial SH3 93.1 0.25 5.5E-06 30.0 4.5 38 113-151 25-62 (63)
85 KOG3565|consensus 91.9 0.06 1.3E-06 48.2 0.6 59 16-74 575-636 (640)
86 PRK10884 SH3 domain-containing 91.4 0.31 6.8E-06 37.5 4.0 43 113-156 48-91 (206)
87 KOG3565|consensus 91.1 0.055 1.2E-06 48.5 -0.4 58 97-154 579-637 (640)
88 KOG0199|consensus 90.5 0.32 6.9E-06 44.1 3.7 51 22-72 377-430 (1039)
89 smart00287 SH3b Bacterial SH3 90.3 0.66 1.4E-05 28.1 4.1 35 37-71 26-61 (63)
90 PF06347 SH3_4: Bacterial SH3 89.7 0.97 2.1E-05 26.8 4.4 35 36-71 19-53 (55)
91 PF06347 SH3_4: Bacterial SH3 88.9 1.2 2.7E-05 26.3 4.5 35 113-150 19-53 (55)
92 KOG3812|consensus 88.2 0.2 4.4E-06 41.1 0.8 49 99-147 61-117 (475)
93 PRK10884 SH3 domain-containing 87.9 0.93 2E-05 35.0 4.3 38 37-74 49-88 (206)
94 KOG3705|consensus 85.5 0.92 2E-05 38.3 3.2 55 98-152 511-565 (580)
95 COG3103 SH3 domain protein [Si 82.5 3.8 8.3E-05 31.5 5.3 102 37-153 49-152 (205)
96 KOG3812|consensus 82.3 0.52 1.1E-05 38.9 0.5 47 22-68 61-117 (475)
97 PRK13914 invasion associated s 77.7 4.2 9.1E-05 35.4 4.6 39 113-152 103-141 (481)
98 COG3103 SH3 domain protein [Si 72.1 8.3 0.00018 29.7 4.5 40 113-153 48-88 (205)
99 KOG0040|consensus 71.1 0.11 2.4E-06 50.1 -6.8 57 98-156 970-1026(2399)
100 KOG3705|consensus 69.9 4.2 9E-05 34.5 2.6 54 21-74 511-566 (580)
101 PRK13914 invasion associated s 68.3 11 0.00025 32.8 5.0 38 37-74 104-142 (481)
102 KOG0040|consensus 67.0 0.2 4.4E-06 48.5 -6.1 57 21-77 970-1026(2399)
103 smart00743 Agenet Tudor-like d 60.6 15 0.00032 21.9 3.3 23 114-136 2-24 (61)
104 COG3807 Uncharacterized protei 58.2 20 0.00044 26.2 4.0 34 37-71 60-94 (171)
105 PF12913 SH3_6: SH3 domain of 52.0 44 0.00096 19.9 4.2 32 37-68 22-54 (54)
106 KOG4384|consensus 47.3 14 0.00031 30.7 2.0 58 98-157 138-197 (361)
107 PF11302 DUF3104: Protein of u 43.0 34 0.00073 21.9 2.8 25 112-136 3-33 (75)
108 KOG3580|consensus 40.9 54 0.0012 29.7 4.6 49 21-69 506-563 (1027)
109 PRK13545 tagH teichoic acids e 33.3 60 0.0013 29.0 3.8 43 118-161 375-422 (549)
110 KOG3580|consensus 25.6 1.1E+02 0.0025 27.7 4.2 51 98-148 506-563 (1027)
111 KOG4384|consensus 23.4 44 0.00096 27.9 1.2 55 22-76 139-195 (361)
No 1
>KOG4226|consensus
Probab=99.85 E-value=5.2e-21 Score=147.86 Aligned_cols=136 Identities=29% Similarity=0.499 Sum_probs=109.6
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCCC----CCCCCccccccCCC--
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS----GAPVDQTLHIDTHS-- 94 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~----~~~~~~~~~~~~~~-- 94 (191)
.+.+.|.|.++.++||++.+|..+.|++++.++||+|..+|+.||||+||+.+..+.... .++...........
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s 188 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGS 188 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCc
Confidence 478899999999999999999999999999999999999999999999999987654221 12111111111111
Q ss_pred -CCccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 95 -DPVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 95 -~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
.-..+.++|.|.+...+||+|++||.+.|+++. ++.||.+++. .|+.|+||.||+..+....
T Consensus 189 ~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~-~G~vGLVPrNYv~vl~d~~ 253 (379)
T KOG4226|consen 189 RVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNA-RGQVGLVPRNYVVVLSDGP 253 (379)
T ss_pred eEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhccc-CCccceeecceEEEeccCc
Confidence 112478899999999999999999999999875 6789999997 8999999999999987544
No 2
>KOG4225|consensus
Probab=99.78 E-value=6.5e-19 Score=143.81 Aligned_cols=132 Identities=56% Similarity=1.014 Sum_probs=108.2
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC--------CCCC-----------
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA--------TPSG----------- 81 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~--------~~~~----------- 81 (191)
..+|+|+|.++...||+|.+|++|.|+.+.+..|++|...|+.|+||++||+.+... .|.+
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y 311 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKY 311 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccC
Confidence 478999999999999999999999999999999999999999999999999988651 1100
Q ss_pred --------------------------------------------------------------------------------
Q psy15854 82 -------------------------------------------------------------------------------- 81 (191)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (191)
T Consensus 312 ~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~~~ 391 (489)
T KOG4225|consen 312 NFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLSED 391 (489)
T ss_pred CCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhcccccc
Confidence
Q ss_pred -----------CCCCcc----------c-----cccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEE
Q psy15854 82 -----------APVDQT----------L-----HIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGS 135 (191)
Q Consensus 82 -----------~~~~~~----------~-----~~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~ 135 (191)
....+. . +.........++|+|.|.++..+||-|..||+|.|++++++||+.|+
T Consensus 392 s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGt 471 (489)
T KOG4225|consen 392 SMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGT 471 (489)
T ss_pred hhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccCcceecc
Confidence 000000 0 01111223357999999999999999999999999999999999997
Q ss_pred eCCCCcEEEEcCCCeee
Q psy15854 136 SQRSGCFGTFPGNYVER 152 (191)
Q Consensus 136 ~~~~g~~G~vP~~~v~~ 152 (191)
..++|+.|.||.|||+.
T Consensus 472 s~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 472 SRRTGKFGTFPGNYVKR 488 (489)
T ss_pred ceecccccccCcccccc
Confidence 77799999999999985
No 3
>KOG4348|consensus
Probab=99.78 E-value=2.5e-19 Score=146.26 Aligned_cols=138 Identities=30% Similarity=0.625 Sum_probs=109.8
Q ss_pred CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCC------------------
Q psy15854 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP------------------ 79 (191)
Q Consensus 18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~------------------ 79 (191)
..+.|.+.|.|.++.+++|.|+.|++|.++....+|||.|.++|+.||||.|||.++..+..
T Consensus 99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlags 178 (627)
T KOG4348|consen 99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGS 178 (627)
T ss_pred cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCc
Confidence 35579999999999999999999999999999999999999999999999999999865411
Q ss_pred -----CC------------------------------------------------------C-CCCccccccCC------
Q psy15854 80 -----SG------------------------------------------------------A-PVDQTLHIDTH------ 93 (191)
Q Consensus 80 -----~~------------------------------------------------------~-~~~~~~~~~~~------ 93 (191)
+. + ...+..+....
T Consensus 179 t~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~t 258 (627)
T KOG4348|consen 179 TARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETT 258 (627)
T ss_pred CCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccch
Confidence 00 0 00000000000
Q ss_pred CCCccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 94 ~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
...-.|+++|.|.++..++|.++.||++.++.+. +-|||.|.. +|+.|.||-||+..+....
T Consensus 259 KtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGEL--nGk~GvFPDNFv~lv~~~l 322 (627)
T KOG4348|consen 259 KTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGEL--NGKKGVFPDNFVELVQVPL 322 (627)
T ss_pred hhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeee--cCccccCCchhhhhcCCcc
Confidence 0122699999999999999999999999988765 558999999 7999999999999988543
No 4
>KOG1029|consensus
Probab=99.76 E-value=5.8e-19 Score=152.19 Aligned_cols=123 Identities=31% Similarity=0.635 Sum_probs=103.9
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CC---eeeEecCCchhcccCCCCCCCCCCccccccCCCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GT---RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSD 95 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g---~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 95 (191)
.+.++.+|.+.....|++..|++|.+..+...|||.|.+ +| +-||||++||+.+...+.-..+...+
T Consensus 981 iAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~-------- 1052 (1118)
T KOG1029|consen 981 IAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRP-------- 1052 (1118)
T ss_pred hhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCc--------
Confidence 467789999999999999999999999999999999976 45 45999999999986542211222211
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
..+++++|||.++..++|+|.+||+|.|+.+.+..||.|.. +|..|+||+|||...
T Consensus 1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~--ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGER--NGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccc--cCccccCcccccccc
Confidence 23589999999999999999999999999999999999998 799999999999653
No 5
>KOG4226|consensus
Probab=99.75 E-value=1.1e-17 Score=129.59 Aligned_cols=133 Identities=35% Similarity=0.563 Sum_probs=103.8
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCC-------------------CC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRAT-------------------PS 80 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-------------------~~ 80 (191)
.+.|.+||.++...+|-+++++.+.++.. ...||++++ ..+.|++|++||+..+... ++
T Consensus 6 ~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s 84 (379)
T KOG4226|consen 6 IVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTS 84 (379)
T ss_pred EEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCC
Confidence 57889999999999999999999988885 468999998 5799999999998754320 00
Q ss_pred C--C-CCCcccc---cc-CCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 81 G--A-PVDQTLH---ID-THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 81 ~--~-~~~~~~~---~~-~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
. . +.+.... ++ .......+.+.|.|.++..+||+|.+|..|.|+++..+|||.|.. +|+.||||+||+.+.
T Consensus 85 ~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~--ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 85 ARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSY--NGQVGWFPSNYVTEE 162 (379)
T ss_pred ccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceeccc--CCeeccccccceehh
Confidence 0 0 0000000 00 001133588899999999999999999999999999999999998 799999999999986
Q ss_pred ccc
Q psy15854 154 SLA 156 (191)
Q Consensus 154 ~~~ 156 (191)
..+
T Consensus 163 ~ds 165 (379)
T KOG4226|consen 163 VDS 165 (379)
T ss_pred ccc
Confidence 554
No 6
>KOG4348|consensus
Probab=99.71 E-value=1.5e-18 Score=141.76 Aligned_cols=134 Identities=28% Similarity=0.588 Sum_probs=108.6
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC---C--------------CCC--
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA---T--------------PSG-- 81 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~---~--------------~~~-- 81 (191)
.+++-|||+++.+++|....|++|+-+.+.+++||.|..+|++|+||.++|.++... + ++.
T Consensus 3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~ 82 (627)
T KOG4348|consen 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNP 82 (627)
T ss_pred ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCC
Confidence 467889999999999999999999988888899999999999999999999987543 0 000
Q ss_pred CCCCcccc---ccCCCCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854 82 APVDQTLH---IDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156 (191)
Q Consensus 82 ~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~ 156 (191)
+...+... ........+|++.|.|.++..++|.|..||+|.+++....|||.|.. +|..|.||.|||..+.-.
T Consensus 83 l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~L--ngk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 83 LTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKL--NGKVGMFPSNFVKELPTP 158 (627)
T ss_pred ccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhcee--cCcccccchhhceecCCC
Confidence 11111111 11111234699999999999999999999999999999999999999 799999999999987653
No 7
>KOG4792|consensus
Probab=99.68 E-value=1.4e-16 Score=120.30 Aligned_cols=137 Identities=26% Similarity=0.420 Sum_probs=106.6
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCCC-----------CCCCCCC-
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRAT-----------PSGAPVD- 85 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-----------~~~~~~~- 85 (191)
...++++|+|.+....+|.|++|+++.++.+.+..||..++ .|++|++|.+||+.+.... ..+.+++
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~ 203 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSG 203 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCC
Confidence 33578899999999999999999999999999999999998 7999999999999865421 0111110
Q ss_pred -------------ccccccCCCCCccEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCe
Q psy15854 86 -------------QTLHIDTHSDPVPYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150 (191)
Q Consensus 86 -------------~~~~~~~~~~~~~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v 150 (191)
..........+..++++++-.+. ....|.+++||+|.|++++..|.|.+.. +|+.|.||..||
T Consensus 204 ~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegEl--nGk~G~fPfThv 281 (293)
T KOG4792|consen 204 GGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGEL--NGKIGHFPFTHV 281 (293)
T ss_pred CCCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeee--cCccccccceeE
Confidence 00011111235567888776665 3456999999999999999999999999 899999999999
Q ss_pred eeccccc
Q psy15854 151 ERASLAL 157 (191)
Q Consensus 151 ~~i~~~~ 157 (191)
+.....+
T Consensus 282 rf~d~~~ 288 (293)
T KOG4792|consen 282 RFTDVQN 288 (293)
T ss_pred EeeccCC
Confidence 9876554
No 8
>KOG1029|consensus
Probab=99.61 E-value=1.5e-15 Score=131.39 Aligned_cols=133 Identities=24% Similarity=0.520 Sum_probs=100.4
Q ss_pred ceEEEeecCC-CCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCch-hcccCCCCCCCCCCccccccCCCCCc
Q psy15854 20 GQARAKFNFV-AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV-EQQSRATPSGAPVDQTLHIDTHSDPV 97 (191)
Q Consensus 20 ~~~~a~~~~~-~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (191)
..+.+++.|. +....+|.|..|+.+.++++ ++.||.|+.+++.|.||++|. .........+-+..... ...+.
T Consensus 906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtek-dgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~----~kkpe 980 (1118)
T KOG1029|consen 906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEK-DGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPT----PKKPE 980 (1118)
T ss_pred ceeEEEecccccccCCCccccccceEEEeec-cCceeccccCCccccccccceeeehhccCCCCCCCCCCC----CCCch
Confidence 3466665555 48889999999999988887 568999999999999999954 44322211111111111 11123
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCC---cEEEEcCCCeeeccccc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG---CFGTFPGNYVERASLAL 157 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g---~~G~vP~~~v~~i~~~~ 157 (191)
.+.++.+|.+..++.|++..|++|.|.++...|||.|..+++| +.||||.+||..+++.+
T Consensus 981 iAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s 1043 (1118)
T KOG1029|consen 981 IAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGS 1043 (1118)
T ss_pred hhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCC
Confidence 4788999999999999999999999999999999999876556 46999999999998664
No 9
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.41 E-value=4.9e-13 Score=79.42 Aligned_cols=49 Identities=41% Similarity=0.817 Sum_probs=44.7
Q ss_pred EeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchh
Q psy15854 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72 (191)
Q Consensus 24 a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~ 72 (191)
|+++|.++..++|+|.+|+.+.+++..+++||.++++|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999989999999999999999999985
No 10
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.40 E-value=7.2e-13 Score=78.70 Aligned_cols=49 Identities=51% Similarity=1.052 Sum_probs=44.3
Q ss_pred EeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151 (191)
Q Consensus 101 ~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~ 151 (191)
|+++|.++..++|+|++||+|.++...+++||.+++ +|+.|+||.+||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~--~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN--TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE--TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE--CCEEEEECHHhCC
Confidence 689999999999999999999999998999999998 7999999999985
No 11
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.30 E-value=7.3e-12 Score=76.26 Aligned_cols=54 Identities=41% Similarity=0.885 Sum_probs=47.7
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEe-EECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~-~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
+++|++||.+...++|+|.+||+|.++ +...++||.++. +|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~--~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN--NGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE--TTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE--CCcEEEEcHHHEEEC
Confidence 378999999999999999999999999 777889999999 799999999999874
No 12
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.25 E-value=1.5e-11 Score=74.92 Aligned_cols=53 Identities=40% Similarity=0.765 Sum_probs=47.3
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEE-EecCCCEEEEEeCCeeeEecCCchhc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGTRRGIFPVTYVEQ 73 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~ 73 (191)
.++|+++|.+...++|+|.+||++.++ +...++||.+..+|+.||||.+|+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 378999999999999999999999999 77778999999999999999999976
No 13
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.19 E-value=5.7e-11 Score=70.22 Aligned_cols=48 Identities=35% Similarity=0.761 Sum_probs=43.8
Q ss_pred EEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcC
Q psy15854 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPG 147 (191)
Q Consensus 100 ~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~ 147 (191)
+|+|+|.+...++|++++||.+.|++..+.+||.++...++++|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999999999999999976689999995
No 14
>KOG2070|consensus
Probab=99.12 E-value=6e-11 Score=98.98 Aligned_cols=67 Identities=28% Similarity=0.587 Sum_probs=59.8
Q ss_pred CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccchhhhcc
Q psy15854 95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWVENA 163 (191)
Q Consensus 95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~~~~~~~ 163 (191)
.+..++|.|.|.+...+||+|.+||+|.|.+..++|||.|+. +|+.||||++||..|..+++..+.+
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTl--ng~TGWFPsnYV~eik~e~pLs~~~ 82 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTL--NGRTGWFPSNYVREIKSEKPLSPKS 82 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccc--cCccCccchHHHHHHhhcCCCCccc
Confidence 345689999999999999999999999999999999999999 7999999999999998766655544
No 15
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.07 E-value=3.8e-10 Score=66.65 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=41.9
Q ss_pred EEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC--CeeeEecC
Q psy15854 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG--TRRGIFPV 68 (191)
Q Consensus 23 ~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~ 68 (191)
+|+|+|.++..++|+|.+|+.+.|++..+.+||.++.. +++|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999999999999983 79999995
No 16
>KOG2070|consensus
Probab=99.06 E-value=1.2e-10 Score=97.12 Aligned_cols=59 Identities=37% Similarity=0.728 Sum_probs=54.8
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCCCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~ 79 (191)
.++|.|.|.+...+||+|.+||+|.|.+..++|||+|.+.|++||||++||.++....|
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p 77 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP 77 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence 58999999999999999999999999999999999999999999999999999875433
No 17
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.03 E-value=1.4e-09 Score=66.01 Aligned_cols=55 Identities=45% Similarity=0.868 Sum_probs=49.8
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
.++++++|.+....+|++.+||.+.+++....+||.++.. .++.|+||.+|++.+
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~~~ 58 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLG-RGKEGLFPSNYVEEI 58 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeC-CCCEEEEchHHEEEC
Confidence 4789999999999999999999999999988899999985 389999999998753
No 18
>KOG3632|consensus
Probab=99.02 E-value=5.4e-10 Score=99.59 Aligned_cols=135 Identities=27% Similarity=0.490 Sum_probs=101.0
Q ss_pred cceEEEeecCCCC--------CCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCCC-----------
Q psy15854 19 EGQARAKFNFVAQ--------THLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRAT----------- 78 (191)
Q Consensus 19 ~~~~~a~~~~~~~--------~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~~----------- 78 (191)
...+.|+|||++- .+.||.|++|++|.|+...+ ++++.|..+|++|++|+|+|.++...+
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~ 1217 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGL 1217 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhcc
Confidence 4568999999983 56889999999999998654 789999999999999999999875432
Q ss_pred -CCC----------CCCCccccccCCCCCccEEEeeeccCCC-------CCCccCCCCCEEEEeEEC-CCCEEEEEeCCC
Q psy15854 79 -PSG----------APVDQTLHIDTHSDPVPYHALYNYKPQN-------DDELELREGETVFVMEKC-DDGWYVGSSQRS 139 (191)
Q Consensus 79 -~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~ 139 (191)
|.. ....+..... ..+....+.+||.+++ ..+|.|..|++|.|.+.. ++|+++|.. +
T Consensus 1218 lPsv~~~e~~~gs~~s~g~~k~vp--~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel--n 1293 (1335)
T KOG3632|consen 1218 LPSVPTEEMRKGSAFSDGQQKMVP--WPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL--N 1293 (1335)
T ss_pred CCCCCchhhhcccccCCCCccccC--CchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccccccc--C
Confidence 111 0001110000 1233578889998763 347999999999998875 568999998 7
Q ss_pred CcEEEEcCCCeeeccccc
Q psy15854 140 GCFGTFPGNYVERASLAL 157 (191)
Q Consensus 140 g~~G~vP~~~v~~i~~~~ 157 (191)
|+.|.+|.++++....+.
T Consensus 1294 gqkglvpsnfle~p~~e~ 1311 (1335)
T KOG3632|consen 1294 GQKGLVPSNFLEAPNAEK 1311 (1335)
T ss_pred CccCccccccccCCCccc
Confidence 999999999999875443
No 19
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.00 E-value=2.3e-09 Score=64.17 Aligned_cols=52 Identities=46% Similarity=0.909 Sum_probs=47.1
Q ss_pred EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151 (191)
Q Consensus 99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~ 151 (191)
++++++|.+...++|++.+||.+.+++....+||.++.. .++.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~-~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLL-GGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEEC-CCCEEEEccccCc
Confidence 689999999999999999999999999988899999985 3399999999986
No 20
>KOG2996|consensus
Probab=99.00 E-value=7.5e-10 Score=94.21 Aligned_cols=54 Identities=37% Similarity=0.737 Sum_probs=47.2
Q ss_pred EEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 99 YHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
+++-|||-+..-.+|+|+.||+|.+..+. +.|||.|.. +|+.||||.+||++-.
T Consensus 808 AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGev--ngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 808 AVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEV--NGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeccccCCCchhhcccccCCEEEEehhccccCceeccee--cCcccccccccccccC
Confidence 56668888888889999999999998876 469999999 7999999999998754
No 21
>KOG1118|consensus
Probab=98.97 E-value=4.2e-10 Score=88.99 Aligned_cols=57 Identities=37% Similarity=0.711 Sum_probs=53.9
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
..|+++|+|+++.+.||-|+.|++|.++...+++||.|...|..||||.+||+.+.+
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 368999999999999999999999999999999999999999999999999998754
No 22
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.91 E-value=4.5e-09 Score=63.70 Aligned_cols=53 Identities=42% Similarity=0.923 Sum_probs=49.1
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeC-CeeeEecCCchhc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG-TRRGIFPVTYVEQ 73 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~ 73 (191)
.++++++|.+....+|+|.+|+.+.++.....+||.++.. ++.|+||.+|++.
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 5789999999999999999999999999888899999986 9999999999865
No 23
>KOG2199|consensus
Probab=98.91 E-value=3.8e-10 Score=91.99 Aligned_cols=58 Identities=29% Similarity=0.583 Sum_probs=54.0
Q ss_pred CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75 (191)
Q Consensus 18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 75 (191)
..++++|+|||++...+||+|++|++|.|++.....||.|.+.+..|+||.+||...-
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 4557999999999999999999999999999999999999999999999999998654
No 24
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.91 E-value=6e-09 Score=62.33 Aligned_cols=51 Identities=39% Similarity=0.859 Sum_probs=47.0
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC-eeeEecCCchh
Q psy15854 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72 (191)
Q Consensus 22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~ 72 (191)
++++++|.+...++|+|.+|+.+.+++....+||.++..+ +.|+||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 5789999999999999999999999998788999999865 99999999985
No 25
>KOG2199|consensus
Probab=98.90 E-value=4e-10 Score=91.86 Aligned_cols=58 Identities=28% Similarity=0.635 Sum_probs=53.2
Q ss_pred CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
....++++|||++.+.+||+|++||+|.|++..+..||.|.+ .+..|+||.|||..+-
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~--~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGEN--HRGIGLFPSNFVTADL 271 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhcccc--CCcccccchhhhhhhh
Confidence 345799999999999999999999999999999999999999 5788999999998865
No 26
>KOG0162|consensus
Probab=98.83 E-value=5e-09 Score=91.33 Aligned_cols=55 Identities=27% Similarity=0.632 Sum_probs=52.0
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 74 (191)
..+.|+|+|.++..+||+|++|++|.++.++.+|||.+..+|++||||.+||+++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 4699999999999999999999999999999999999999999999999999763
No 27
>KOG3601|consensus
Probab=98.81 E-value=1.5e-09 Score=81.80 Aligned_cols=131 Identities=26% Similarity=0.518 Sum_probs=95.8
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccCC-----------------------
Q psy15854 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSRA----------------------- 77 (191)
Q Consensus 22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~----------------------- 77 (191)
..++++|.....+||+|.+|+.+.++...+ -.|......|..|++|.||.......
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~f 82 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDF 82 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchh
Confidence 456789999999999999999998887644 36888888999999999887432111
Q ss_pred -------CCCC------------------------------CCCC-cccc-----------------cc-------CCCC
Q psy15854 78 -------TPSG------------------------------APVD-QTLH-----------------ID-------THSD 95 (191)
Q Consensus 78 -------~~~~------------------------------~~~~-~~~~-----------------~~-------~~~~ 95 (191)
.|+. .+.. ...+ .. +...
T Consensus 83 l~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~ 162 (222)
T KOG3601|consen 83 LIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPT 162 (222)
T ss_pred hhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCCcc
Confidence 0000 0000 0000 00 0001
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
.....++|+|....+.++.+++|+.+.++...+.-||.|+. -|..|+||++|+....
T Consensus 163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~--lg~agiFpagyv~p~d 219 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSK--LGRAGIFPAGYVAPSD 219 (222)
T ss_pred chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccc--cCceeeecCccccccc
Confidence 12467889999999999999999999999999999999998 6999999999987653
No 28
>KOG1118|consensus
Probab=98.71 E-value=9.6e-09 Score=81.41 Aligned_cols=56 Identities=38% Similarity=0.779 Sum_probs=52.2
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
..|+++|||+++..+||.|+.||+|.++..-+.+||.|.. .|..|+||.+||+++-
T Consensus 307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~--~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEK--HGESGMFPVNYVEVLV 362 (366)
T ss_pred hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhee--cCccCccccceeEEec
Confidence 3599999999999999999999999999999999999998 7999999999999864
No 29
>KOG4225|consensus
Probab=98.67 E-value=2.3e-08 Score=82.60 Aligned_cols=58 Identities=33% Similarity=0.720 Sum_probs=54.6
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
.++++|+|.++...||.|.+||+|.|+.+.+..|+.|.. .|..|+||++||+.+....
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEh--hGr~GifP~sYvE~~~~~e 289 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEH--HGRVGIFPASYVEILTPRE 289 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeee--cceecceechheeecCccc
Confidence 378999999999999999999999999999999999999 7999999999999998754
No 30
>KOG0162|consensus
Probab=98.60 E-value=5e-08 Score=85.28 Aligned_cols=54 Identities=39% Similarity=0.776 Sum_probs=50.9
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
.|.|+|+|.++..+||+|++|++|.++.+...|||.|+. +|++||||.+||.++
T Consensus 1053 ~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~--~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKL--NGKEGLFPGNYVTEY 1106 (1106)
T ss_pred ceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhcc--CCccccccccccccC
Confidence 599999999999999999999999999999999999997 799999999999764
No 31
>KOG2546|consensus
Probab=98.55 E-value=2.9e-08 Score=81.74 Aligned_cols=54 Identities=48% Similarity=0.961 Sum_probs=51.1
Q ss_pred EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
+.++|||.+...++|+|..|-++.+++++++|||+|.. ++..|+||.|||+.+.
T Consensus 426 Vv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~--~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 426 VVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQ--DGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHhhcccccccccccccccccEEEEEEecCCcchhhee--cCcceeccCccccccc
Confidence 67899999999999999999999999999999999998 7999999999999875
No 32
>KOG2856|consensus
Probab=98.49 E-value=2.9e-08 Score=80.45 Aligned_cols=56 Identities=39% Similarity=0.734 Sum_probs=50.0
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
++++++|||.+++.++|+|+.||.+..+... .-||+.|+.. .|+.|++|+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~-~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLD-SGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCcccccccccccc-CCcccccchhhhhcc
Confidence 5799999999999999999999999877665 4689999985 699999999999865
No 33
>KOG4792|consensus
Probab=98.41 E-value=1.5e-07 Score=71.80 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=54.5
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
..+.++|||.+...++|.|++||++.|+.+....||..++. .|+.|.+|..||+.+....
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns-~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS-EGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc-CCcccceechHHHhhhhhh
Confidence 34778999999999999999999999999998899999997 8999999999999977654
No 34
>KOG2856|consensus
Probab=98.40 E-value=7.1e-08 Score=78.23 Aligned_cols=55 Identities=31% Similarity=0.609 Sum_probs=48.5
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeC-CeeeEecCCchhcc
Q psy15854 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIG-TRRGIFPVTYVEQQ 74 (191)
Q Consensus 20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~ 74 (191)
..++++|||.++..++|+|++|+.+..+...+ -||+.|++. |+.|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 35899999999999999999999998777654 599999996 99999999999754
No 35
>KOG1264|consensus
Probab=98.37 E-value=2.1e-07 Score=82.32 Aligned_cols=59 Identities=31% Similarity=0.581 Sum_probs=53.9
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCC-eeeEecCCchhcccCC
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRA 77 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~~ 77 (191)
...++|+++|.+...+||+|.++-+|..+++.+++||.|+.+| ..+|||++||+++..+
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 4568999999999999999999999999999999999999975 7899999999998763
No 36
>KOG1264|consensus
Probab=98.34 E-value=3.5e-07 Score=80.95 Aligned_cols=62 Identities=35% Similarity=0.577 Sum_probs=55.6
Q ss_pred CCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 95 DPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 95 ~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
..+.++|+|+|.+...+||+|.++-+|..+++..+|||.|.+. ....+|||++||+.|..++
T Consensus 773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYG-g~iq~wfPsnyVeei~~~~ 834 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYG-GRIQQWFPSNYVEEISTAD 834 (1267)
T ss_pred cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccc-cceeeeccHHHhhhhcccc
Confidence 3467999999999999999999999999999999999999994 4468999999999998754
No 37
>KOG0515|consensus
Probab=98.32 E-value=3.5e-07 Score=77.56 Aligned_cols=58 Identities=33% Similarity=0.557 Sum_probs=51.7
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEEecC---CCEEEEEeCCeeeEecCCchhcccC
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD---NNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
...+.|++||+++..+||+|..||.++|+++++ ..||.++++|++|+||.+|+-.+..
T Consensus 683 ~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 683 KGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR 743 (752)
T ss_pred cceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence 456899999999999999999999999999855 3799999999999999999977644
No 38
>KOG2546|consensus
Probab=98.32 E-value=3e-07 Score=75.90 Aligned_cols=55 Identities=29% Similarity=0.645 Sum_probs=52.1
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhccc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~ 75 (191)
++.++|||.+..+++|+|.+|-++.++++.+++||+|..+|..|+||.|||+.+.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 4788999999999999999999999999999999999999999999999998874
No 39
>KOG1702|consensus
Probab=98.25 E-value=1.4e-06 Score=65.49 Aligned_cols=60 Identities=33% Similarity=0.748 Sum_probs=54.1
Q ss_pred CCCccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 94 ~~~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
+.+..+.+.|||.++..++++|.-||.|..++..++||.+|+..++|..|..|+||++-+
T Consensus 205 ~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 205 CTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 344568999999999999999999999999999999999999988999999999999753
No 40
>KOG0515|consensus
Probab=98.21 E-value=5.8e-07 Score=76.28 Aligned_cols=55 Identities=31% Similarity=0.546 Sum_probs=48.9
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECC---CCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~---~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
.+.++|||+++..+||+|..||.+.|+.+.+ ..||+++. +|++|+||++|+-.+.
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~l--ng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARL--NGEEGYVPRNYLGLYP 742 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhh--cCcccccchhhhhcCc
Confidence 3789999999999999999999999999854 46999997 7999999999987653
No 41
>KOG2996|consensus
Probab=98.16 E-value=1.9e-06 Score=73.90 Aligned_cols=55 Identities=38% Similarity=0.770 Sum_probs=48.1
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhccc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQS 75 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~ 75 (191)
.+++-|||-+..-.+|+|+.|+++.++.+.+ .|||+|...|+.||||++||++..
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 4667788888888999999999999988755 489999999999999999998753
No 42
>KOG1702|consensus
Probab=98.15 E-value=2.6e-06 Score=64.10 Aligned_cols=58 Identities=26% Similarity=0.576 Sum_probs=51.4
Q ss_pred CCCcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhc
Q psy15854 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQ 73 (191)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~ 73 (191)
..++..+++.|||.++..++.+|.-|+-|..++..+.||..|.. .|..|+.|+||++-
T Consensus 204 ~~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 204 SCTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CCCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 44456799999999999999999999999988888889998866 79999999999864
No 43
>KOG3875|consensus
Probab=97.92 E-value=1.7e-06 Score=68.90 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=50.5
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-----CCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKC-----DDGWYVGSSQRSGCFGTFPGNYVERASLA 156 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-----~~gw~~~~~~~~g~~G~vP~~~v~~i~~~ 156 (191)
.+++++|||.+..+.||+|++||.+.|..+. ...||..+....+..|+||.|||+.+..+
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq 333 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQ 333 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcC
Confidence 4689999999999999999999999887765 23588877654667899999999999763
No 44
>KOG4278|consensus
Probab=97.91 E-value=1.4e-05 Score=69.89 Aligned_cols=57 Identities=25% Similarity=0.517 Sum_probs=49.4
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeeccc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASL 155 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~ 155 (191)
..+.++|||.+...+.|++.+||.++|+..+. +.|+..+.. +|+ ||||.||+.++..
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartK-NGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTK-NGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeeccc-CCC-ccccccccccccc
Confidence 35899999999999999999999999999885 458888874 666 9999999998754
No 45
>KOG3655|consensus
Probab=97.89 E-value=4.6e-06 Score=69.99 Aligned_cols=55 Identities=35% Similarity=0.633 Sum_probs=51.1
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~ 74 (191)
..++|+|+|++..+.+++|..++.|.++...+.+||.|.. +|+.|+||+|||+.+
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 3579999999999999999999999999999999999988 799999999999875
No 46
>KOG3523|consensus
Probab=97.85 E-value=1.7e-06 Score=74.50 Aligned_cols=62 Identities=34% Similarity=0.541 Sum_probs=56.9
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
..++.+...|.+..+++|.++.+|++.|+.+..+||..|...++|..||||.+|++.|....
T Consensus 608 cpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 608 CPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred CChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence 34688899999999999999999999999999999999999889999999999999987654
No 47
>KOG3601|consensus
Probab=97.85 E-value=1.2e-05 Score=60.98 Aligned_cols=58 Identities=24% Similarity=0.446 Sum_probs=52.7
Q ss_pred CCcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 74 (191)
+......++|+|..+...++.|.+|+.+.++..++..||.|...|+.|+||++|+...
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 3445678899999999999999999999999999999999999999999999998654
No 48
>KOG3655|consensus
Probab=97.81 E-value=7.4e-06 Score=68.75 Aligned_cols=57 Identities=33% Similarity=0.793 Sum_probs=52.1
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
+..+.++|||++-...+++|..++.|..+...+.|||.|... +|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~p-dG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGP-DGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCC-CCCcCcccccccccC
Confidence 335889999999999999999999999999999999999987 889999999999875
No 49
>KOG1843|consensus
Probab=97.79 E-value=1.3e-05 Score=66.25 Aligned_cols=55 Identities=35% Similarity=0.723 Sum_probs=49.8
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhc
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQ 73 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~ 73 (191)
...+.++++|.++..++++|++|++|.++.+.+ ..||.++.++++|+||+|||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 346899999999999999999999999988866 5899999999999999999864
No 50
>KOG1843|consensus
Probab=97.57 E-value=4e-05 Score=63.33 Aligned_cols=55 Identities=31% Similarity=0.735 Sum_probs=49.0
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECC--CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVER 152 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~--~gw~~~~~~~~g~~G~vP~~~v~~ 152 (191)
+..+.++|+|.++..++|+|++||+|.++++.+ ..||.++. ++.+|+||++||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~--~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRG--NGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhc--cccccccccceecc
Confidence 336899999999999999999999999988874 46999998 79999999999874
No 51
>KOG3875|consensus
Probab=97.56 E-value=1.4e-05 Score=63.77 Aligned_cols=56 Identities=34% Similarity=0.568 Sum_probs=47.3
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecC-----CCEEEEEe--CCeeeEecCCchhcccC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-----NNWFEGRI--GTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-----~~w~~~~~--~g~~G~~P~~~v~~~~~ 76 (191)
.++|+|||.+..+.|++|++||.+.|..+.+ ..||..+. ++..|+||.|||+++..
T Consensus 270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 5899999999999999999999998876633 35777754 56889999999999876
No 52
>KOG2528|consensus
Probab=97.47 E-value=8.4e-05 Score=62.11 Aligned_cols=59 Identities=34% Similarity=0.656 Sum_probs=51.7
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
..+++|||..+...+++...|+.+.+.... ..|||.+.+. .|..|.||+.||+.++.+.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Ns-rge~GlfPa~yVeV~~~a~ 63 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNS-RGERGLFPASYVEVTRLAV 63 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCc-cCccCCCcccceeeecccc
Confidence 478999999999999999999999887754 6789999987 7899999999999998433
No 53
>KOG3523|consensus
Probab=97.43 E-value=2.4e-05 Score=67.56 Aligned_cols=57 Identities=28% Similarity=0.585 Sum_probs=52.2
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA 77 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~ 77 (191)
.+.+...|.+...++|++..++++.|+++..+||+.|.. +|.+||||.+|++++...
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~ 668 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP 668 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence 467789999999999999999999999999999999965 799999999999999764
No 54
>KOG4278|consensus
Probab=97.41 E-value=0.00047 Score=60.73 Aligned_cols=56 Identities=27% Similarity=0.462 Sum_probs=48.6
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCchhcccC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
...|+|||.+.++..|++.+|+.++|+.... +.|++.+....+||||.||..+++.
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNS 148 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNS 148 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccc
Confidence 5799999999999999999999999999865 4688887755559999999988765
No 55
>KOG3557|consensus
Probab=97.16 E-value=0.00031 Score=61.25 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=52.3
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
...+.+.|||.++...+|++.+||++.++... ..||.+++. .|+.|+||.+.+..+....
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~-~G~~GyvP~nIL~~~~~~~ 559 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNG-HGRAGYVPSNILAPLQPEH 559 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCc-cCCCCCcchhhhccCCCcc
Confidence 34689999999999999999999999887654 469999987 7899999999999988765
No 56
>KOG3775|consensus
Probab=97.14 E-value=0.00022 Score=58.52 Aligned_cols=59 Identities=34% Similarity=0.615 Sum_probs=53.0
Q ss_pred EEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
-++++.|.++..+||-|.+||-|.|-...++-|++|.+.|+|+.|+||+.|+..+....
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e 323 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE 323 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence 46788899999999999999999988888888999999999999999999999987543
No 57
>KOG2222|consensus
Probab=97.02 E-value=0.00014 Score=61.58 Aligned_cols=56 Identities=29% Similarity=0.537 Sum_probs=51.1
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
.++|+.||....+++|.|.++++++++...++-.|-|..+|-+||||+.+|+.+..
T Consensus 550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde 605 (848)
T KOG2222|consen 550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE 605 (848)
T ss_pred HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence 46789999999999999999999999998888889999999999999999988754
No 58
>KOG3632|consensus
Probab=97.00 E-value=0.00069 Score=61.74 Aligned_cols=58 Identities=33% Similarity=0.635 Sum_probs=49.5
Q ss_pred cEEEeeeccCC--------CCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 98 PYHALYNYKPQ--------NDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 98 ~~~~~~d~~~~--------~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
.+++++||++. ...||.|+.|+||.|+... -+|++.|.. +|..|+||+|+|.++...+
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~--ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL--NGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc--ccccccccccccccccCCc
Confidence 58999999875 3568999999999998865 478999998 7999999999999987655
No 59
>KOG4773|consensus
Probab=96.98 E-value=0.00012 Score=59.43 Aligned_cols=56 Identities=32% Similarity=0.661 Sum_probs=52.0
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
...++++|.+....||.|+.|+++.++.+++.+||.|..+|.+||+|.+|+..+..
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~ 232 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDD 232 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhcc
Confidence 46789999999999999999999999999999999999999999999999998843
No 60
>KOG2222|consensus
Probab=96.95 E-value=0.00015 Score=61.37 Aligned_cols=58 Identities=28% Similarity=0.497 Sum_probs=52.1
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~ 156 (191)
.+++++.||.....++|.|+++++|.++..-+.-.|.|.. +|-+||||+.||+.+...
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvgel--nglrgwfpakfvellder 606 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGEL--NGLRGWFPAKFVELLDER 606 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeecc--ccccccchHHHHHHHHhc
Confidence 3588999999999999999999999999988888999998 799999999999987653
No 61
>KOG2528|consensus
Probab=96.76 E-value=0.00054 Score=57.40 Aligned_cols=57 Identities=37% Similarity=0.689 Sum_probs=50.3
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRI-GTRRGIFPVTYVEQQSRA 77 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~~~~ 77 (191)
+.+++++|..+...+++...++.+.+..... ++||.+.+ .|.+|+||+.|++.+...
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a 62 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLA 62 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccc
Confidence 4689999999999999999999999877644 79999987 799999999999988643
No 62
>KOG3557|consensus
Probab=96.54 E-value=0.0012 Score=57.83 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=51.4
Q ss_pred CcceEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcccCC
Q psy15854 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQSRA 77 (191)
Q Consensus 18 ~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~ 77 (191)
.+..+.++|||.+....+|+..+|+++.|+.. ...||.+++ .|+.|++|.+.+..+...
T Consensus 499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 34468889999999999999999999988875 578999988 689999999999888654
No 63
>KOG0197|consensus
Probab=96.39 E-value=0.00088 Score=57.19 Aligned_cols=56 Identities=30% Similarity=0.653 Sum_probs=49.2
Q ss_pred cEEEeeeccCCCCCCccCCCCCE-EEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 98 PYHALYNYKPQNDDELELREGET-VFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~-v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
.+.++++|.+....+|+|.+|+. ..+++..+..||..+....+..|++|.|||...
T Consensus 13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 13 IVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred eEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 48999999999999999999999 667777778899988755788999999999974
No 64
>KOG1451|consensus
Probab=96.24 E-value=0.0078 Score=52.43 Aligned_cols=54 Identities=26% Similarity=0.568 Sum_probs=46.7
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEE-ecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIR-RVDNNWFEGRIGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~ 74 (191)
.+.+++.-.+....+++|..|.++.-+. ...+||..|+++|++|++|.|||+.+
T Consensus 758 k~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 758 RVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 4677888888899999999999988665 55689999999999999999999864
No 65
>KOG4773|consensus
Probab=96.20 E-value=0.00051 Score=55.86 Aligned_cols=55 Identities=22% Similarity=0.532 Sum_probs=50.4
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
...+++||.+....||.|..|+++.++.+.+.+||.|+. .+..||+|.+|+..+.
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~--R~~~g~yp~sF~~~ld 231 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKV--RGLTGYYPDSFVKQLD 231 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeee--ccccccccHHhhhhhc
Confidence 467889999999999999999999999999999999998 6899999999999873
No 66
>KOG4575|consensus
Probab=96.16 E-value=0.0085 Score=52.57 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=44.9
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
+..++|+|.+.++..++|.|..||++.++.-.++-||.+...-....|+||.|||..+
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 4568999999999999999999999988777655444444422456799999999443
No 67
>KOG3775|consensus
Probab=96.00 E-value=0.0036 Score=51.56 Aligned_cols=56 Identities=38% Similarity=0.591 Sum_probs=49.8
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcccCC
Q psy15854 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA 77 (191)
Q Consensus 22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~ 77 (191)
-++++.|.+...+||.+..|+.+.|-...++.|.+|.+ +|++|.||+.|+.++...
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 46788899999999999999999998888889999976 799999999999887654
No 68
>KOG0609|consensus
Probab=95.99 E-value=0.0032 Score=54.14 Aligned_cols=54 Identities=20% Similarity=0.487 Sum_probs=44.6
Q ss_pred ceEEEeecCCCCCC-------CCccccCCCEEEEEEecCCCEEEEEeC-----CeeeEecCCchhc
Q psy15854 20 GQARAKFNFVAQTH-------LELSLVKGELVTLIRRVDNNWFEGRIG-----TRRGIFPVTYVEQ 73 (191)
Q Consensus 20 ~~~~a~~~~~~~~~-------~els~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~ 73 (191)
..++|+|||++..+ ..|+|.+||++.++..++..||.++.- +.-|++|+..+++
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 47899999998765 447999999999999999999999763 4568999876654
No 69
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.93 E-value=0.016 Score=38.00 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 109 NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 109 ~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
...+|.+.+||++.|++..+..-|.|++. .|+-|+|+.+++-...
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~-~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS-EGKYGYVLRSHLLPLD 73 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEET-TTEEEEEEGGGS----
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCC-CCceeEEEHHHccCCC
Confidence 34689999999999999999999999998 8999999999986543
No 70
>KOG0197|consensus
Probab=95.86 E-value=0.0037 Score=53.44 Aligned_cols=56 Identities=25% Similarity=0.562 Sum_probs=49.4
Q ss_pred cceEEEeecCCCCCCCCccccCCCE-EEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGEL-VTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~-i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~ 74 (191)
...+.++++|.+....+|+|.+|++ ..+++..+..||..+. .+..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 4478999999999999999999999 7788877789999866 688999999999875
No 71
>KOG1451|consensus
Probab=95.85 E-value=0.012 Score=51.41 Aligned_cols=56 Identities=32% Similarity=0.582 Sum_probs=46.1
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEe-EECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~-~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
...+.+++.-.+....++++..|.++.-. ....+||..|+. +|+.|++|.|||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtL--nGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTL--NGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeeec--CCCcccCcccccCcC
Confidence 33567777777778889999999998744 466889999999 799999999999853
No 72
>KOG3725|consensus
Probab=95.85 E-value=0.003 Score=49.61 Aligned_cols=56 Identities=32% Similarity=0.594 Sum_probs=49.1
Q ss_pred cceEEEeecCCCCCCCCccccCCCEEEEEEecC--CCEEEEEeCCeeeEecCCchhcc
Q psy15854 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 19 ~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~ 74 (191)
.+++++++||++....+|++-.++++.|....+ ..|.-+..+++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 446899999999999999999999998877644 57998999999999999999865
No 73
>KOG3725|consensus
Probab=95.63 E-value=0.0043 Score=48.71 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=47.8
Q ss_pred CccEEEeeeccCCCCCCccCCCCCEEEEeEEC--CCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 96 PVPYHALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~--~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
..+++++|||++-...+|++-.+++|.|.... +..|..+.. .++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgEr--GnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGER--GNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhh--cCCCCCcchhHHHhc
Confidence 45799999999999999999999999887765 567999987 688999999998754
No 74
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.40 E-value=0.032 Score=36.61 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCCccccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhccc
Q psy15854 32 THLELSLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQS 75 (191)
Q Consensus 32 ~~~els~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~ 75 (191)
+.-+|.+.+||.+.|++..+..-|.|++ .|+-|+|+.+++-+..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 4577999999999999999999999998 7999999999886543
No 75
>KOG3771|consensus
Probab=95.15 E-value=0.016 Score=49.14 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=41.3
Q ss_pred ceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEeCCeeeEecCCch
Q psy15854 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYV 71 (191)
Q Consensus 20 ~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v 71 (191)
-.+.++++|..+..++|+|..|+.|.|+...+ ..||.|+.-|..+-++.+|+
T Consensus 401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~ 453 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLF 453 (460)
T ss_pred cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccce
Confidence 35789999999999999999999999998655 57888887665444444444
No 76
>KOG4429|consensus
Probab=95.13 E-value=0.0064 Score=48.61 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=48.4
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
.|.+.|.|+....++|...+|+++.+-+....|||.|+. .|..|-||+.+++..
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl--~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRL--LGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeee--ccccCCCcHHHHHHh
Confidence 488999999999999999999999888888899999999 688899999888753
No 77
>KOG0609|consensus
Probab=95.08 E-value=0.0075 Score=51.95 Aligned_cols=60 Identities=23% Similarity=0.532 Sum_probs=47.4
Q ss_pred CccEEEeeeccCCCCC-------CccCCCCCEEEEeEECCCCEEEEEeCC---CCcEEEEcCCCeeeccc
Q psy15854 96 PVPYHALYNYKPQNDD-------ELELREGETVFVMEKCDDGWYVGSSQR---SGCFGTFPGNYVERASL 155 (191)
Q Consensus 96 ~~~~~~~~d~~~~~~~-------eLs~~~ge~v~v~~~~~~gw~~~~~~~---~g~~G~vP~~~v~~i~~ 155 (191)
..++++++||.+.... .|+|.+||++.|+...+..||.++.-. .+..|.+|+..++.-..
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~ 283 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRV 283 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHH
Confidence 3578999999987533 599999999999999999999998742 25679999877665443
No 78
>KOG4575|consensus
Probab=94.77 E-value=0.045 Score=48.21 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=44.8
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~ 74 (191)
.++|+|.+.++..++|.|..||++.++...++-||-+.+ ....|+||.|+|.-+
T Consensus 10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 10 MVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred eEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 578999999999999999999999999886655665554 457899999999544
No 79
>KOG4429|consensus
Probab=94.44 E-value=0.033 Score=44.69 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=48.7
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~ 74 (191)
.|.++|+|.....++|....|++..+-+....+||.|+..|.-|-||+.+++++
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 478899999999999999999998888887889999999999999999998765
No 80
>KOG0199|consensus
Probab=94.33 E-value=0.055 Score=48.74 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=43.7
Q ss_pred EEEeeeccCCCCCCccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeee
Q psy15854 99 YHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVER 152 (191)
Q Consensus 99 ~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~ 152 (191)
..+..+++..+.+.|.+++||.|.|++... +-||.|.+.++++.|-||.+.|..
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 344455556778899999999999988765 349999988899999999998873
No 81
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.32 E-value=0.1 Score=30.94 Aligned_cols=37 Identities=32% Similarity=0.622 Sum_probs=29.2
Q ss_pred cCCCCCEEEEeEECCCC-EEEEEeCCCCcEEEEcCCCee
Q psy15854 114 ELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVE 151 (191)
Q Consensus 114 s~~~ge~v~v~~~~~~g-w~~~~~~~~g~~G~vP~~~v~ 151 (191)
.+..|+.+.++.....+ |+..+.. ++..||+...||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~-~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTY-DGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEE-TTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECc-CCcEEEEEccccC
Confidence 46789999998887655 9999444 7889999999874
No 82
>KOG3771|consensus
Probab=93.73 E-value=0.03 Score=47.55 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=40.4
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCee
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVE 151 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~ 151 (191)
++.++++|.+...++|+|..|+.|.++... ...||.|+. .|..+-++.+|+.
T Consensus 402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~--mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWL--MGVKESDWNGLFP 454 (460)
T ss_pred ceeccccccccccccccccCCCEEEEecCCCccchhhHHH--hhhccccccccee
Confidence 588999999999999999999999998865 346888887 4554444455543
No 83
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.45 E-value=0.2 Score=29.64 Aligned_cols=36 Identities=25% Similarity=0.544 Sum_probs=29.0
Q ss_pred cccCCCEEEEEEecCCC-EEEE-EeCCeeeEecCCchh
Q psy15854 37 SLVKGELVTLIRRVDNN-WFEG-RIGTRRGIFPVTYVE 72 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~~-w~~~-~~~g~~G~~P~~~v~ 72 (191)
.+..|+.+.++...... |++. ...|..||+...|++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 56789999999887655 9999 558999999988864
No 84
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.10 E-value=0.25 Score=29.95 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=30.0
Q ss_pred ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCee
Q psy15854 113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151 (191)
Q Consensus 113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~ 151 (191)
..+..|+.+.++.....+|+..+.. +|..||++..++.
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~-~g~~Gwi~~~~~~ 62 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYG-SGQRGYVPGYVVN 62 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcC-CCCEEEEEeeeec
Confidence 3477899999988765589999874 5899999776653
No 85
>KOG3565|consensus
Probab=91.86 E-value=0.06 Score=48.22 Aligned_cols=59 Identities=22% Similarity=0.478 Sum_probs=50.3
Q ss_pred CCCcceEEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEE--eCCeeeEecCCchhcc
Q psy15854 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGR--IGTRRGIFPVTYVEQQ 74 (191)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~~ 74 (191)
.+..+.+.+++.|.++.++++++..|+++.+++.+. .+|-+++ ..+..|.+|.+|++..
T Consensus 575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 445667899999999999999999999999888755 5788887 5788999999998765
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.39 E-value=0.31 Score=37.54 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=35.3
Q ss_pred ccCCCCCEEEEeEECC-CCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854 113 LELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVERASLA 156 (191)
Q Consensus 113 Ls~~~ge~v~v~~~~~-~gw~~~~~~~~g~~G~vP~~~v~~i~~~ 156 (191)
-.+..|+.+.+++..+ ++|...+.. +|.+|||+..|+......
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~-~G~~GWV~~~~Ls~~p~~ 91 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDS-KGRTAWIPLKQLSTTPSL 91 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeC-CCCEEeEEHHHhcCCccH
Confidence 4578999999998775 679999875 789999999998876543
No 87
>KOG3565|consensus
Probab=91.09 E-value=0.055 Score=48.47 Aligned_cols=58 Identities=28% Similarity=0.543 Sum_probs=49.4
Q ss_pred ccEEEeeeccCCCCCCccCCCCCEEEEeEEC-CCCEEEEEeCCCCcEEEEcCCCeeecc
Q psy15854 97 VPYHALYNYKPQNDDELELREGETVFVMEKC-DDGWYVGSSQRSGCFGTFPGNYVERAS 154 (191)
Q Consensus 97 ~~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~-~~gw~~~~~~~~g~~G~vP~~~v~~i~ 154 (191)
..+.+++.|.+...+++++..|+++.+++.. ++||=.++...++..|++|.+|++...
T Consensus 579 ~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 579 RTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred cceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 3588899999999999999999999988865 678888884347899999999998764
No 88
>KOG0199|consensus
Probab=90.54 E-value=0.32 Score=44.12 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=41.9
Q ss_pred EEEeecCCCCCCCCccccCCCEEEEEEecC-CCEEEEEe--CCeeeEecCCchh
Q psy15854 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRI--GTRRGIFPVTYVE 72 (191)
Q Consensus 22 ~~a~~~~~~~~~~els~~~g~~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~ 72 (191)
..+..+|+....+.|.|.+||.|.|++... +.||.|.+ +++.|.||.+-|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 445556667888899999999999999765 57999976 6799999998876
No 89
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=90.29 E-value=0.66 Score=28.05 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.3
Q ss_pred cccCCCEEEEEEecCCCEEEEEeC-CeeeEecCCch
Q psy15854 37 SLVKGELVTLIRRVDNNWFEGRIG-TRRGIFPVTYV 71 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v 71 (191)
.+..|+.+.++.....+|++.+.. |..||++..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 577899999988755589999885 99999976554
No 90
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=89.68 E-value=0.97 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.1
Q ss_pred ccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCch
Q psy15854 36 LSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71 (191)
Q Consensus 36 ls~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v 71 (191)
..+.+|..+.+.. ...+|++.+.+|..||+..+.+
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence 4567788887774 4779999999999999987654
No 91
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=88.91 E-value=1.2 Score=26.28 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.8
Q ss_pred ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCe
Q psy15854 113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150 (191)
Q Consensus 113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v 150 (191)
..+..|..+.+++. .++|+..+. +|..||+....|
T Consensus 19 ~~l~~g~~v~v~~~-~~~W~~V~~--~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIEC-RGGWCKVRA--DGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEc-cCCeEEEEE--CCeEEeEEeeec
Confidence 56788888888744 567999994 899999987765
No 92
>KOG3812|consensus
Probab=88.21 E-value=0.2 Score=41.12 Aligned_cols=49 Identities=16% Similarity=0.446 Sum_probs=36.9
Q ss_pred EEEeeeccCCC-------CCCccCCCCCEEEEeEECCCCEEEEEeCCCC-cEEEEcC
Q psy15854 99 YHALYNYKPQN-------DDELELREGETVFVMEKCDDGWYVGSSQRSG-CFGTFPG 147 (191)
Q Consensus 99 ~~~~~d~~~~~-------~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g-~~G~vP~ 147 (191)
+++..+|.+.- ...++|+..|.+.|-++-+..||.|+.-+.| ..||+|.
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 45556666542 2358899999999988888999999874344 5799997
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.94 E-value=0.93 Score=34.95 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=32.1
Q ss_pred cccCCCEEEEEEecC-CCEEEEEe-CCeeeEecCCchhcc
Q psy15854 37 SLVKGELVTLIRRVD-NNWFEGRI-GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 37 s~~~g~~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~ 74 (191)
.+..|+.+.++...+ .+|.+.+. +|++||++..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 677899999998765 58999986 789999999998754
No 94
>KOG3705|consensus
Probab=85.50 E-value=0.92 Score=38.30 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=44.7
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~ 152 (191)
..+++++..++...++.++.||.|.|-...=+|.-.|++...++.|.||+.-|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 4788999999999999999999998866554556667776678999999876665
No 95
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=82.53 E-value=3.8 Score=31.54 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=64.7
Q ss_pred cccCCCEEEEEEecCC-CEEEEEe-CCeeeEecCCchhcccCCCCCCCCCCccccccCCCCCccEEEeeeccCCCCCCcc
Q psy15854 37 SLVKGELVTLIRRVDN-NWFEGRI-GTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELE 114 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~-~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~eLs 114 (191)
+++.|+.+.|+..... +|.+.+. .|+.|||+..++........ . ......+++..-+-..+ -.-.
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~----~-------~p~~~~nVr~~t~t~~~--v~g~ 115 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNE----R-------VPDLELNVRELTKTLSN--VDGT 115 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccce----e-------cCchhhhhhhcccchhh--hhhh
Confidence 6889999999998664 7999887 78999999887765432200 0 00000011111111111 1234
Q ss_pred CCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 115 LREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 115 ~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
++.|..+++......+|..... .++.|++-..|+..-
T Consensus 116 ~~~~t~~~~~sk~~~~w~~~~~--~~k~~~vs~q~~~~~ 152 (205)
T COG3103 116 WKQGTAVMQISKTQNNWYIITL--KGKNGYVSGQLVTAQ 152 (205)
T ss_pred hhcCcEEEEEeeccccchhhhh--hcccchhhhhheecc
Confidence 6778888887777788888887 578888877776653
No 96
>KOG3812|consensus
Probab=82.33 E-value=0.52 Score=38.85 Aligned_cols=47 Identities=19% Similarity=0.556 Sum_probs=36.8
Q ss_pred EEEeecCCCCCCCC-------ccccCCCEEEEEEecCCCEEEEEe---CCeeeEecC
Q psy15854 22 ARAKFNFVAQTHLE-------LSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPV 68 (191)
Q Consensus 22 ~~a~~~~~~~~~~e-------ls~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~ 68 (191)
+++..+|.+.-+++ ++|...+++.+.++.+.+||-|+. +..-||+|.
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 45556787765544 688899999999999999999976 456799996
No 97
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=77.72 E-value=4.2 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=32.7
Q ss_pred ccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeee
Q psy15854 113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152 (191)
Q Consensus 113 Ls~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~ 152 (191)
-++..|+.|.++.....||+..+.. +|..|||-..||..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~-~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYN-DGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcC-CCCEEEEecccccC
Confidence 4688999999976556789999985 68999999999875
No 98
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=72.12 E-value=8.3 Score=29.72 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=33.2
Q ss_pred ccCCCCCEEEEeEECCC-CEEEEEeCCCCcEEEEcCCCeeec
Q psy15854 113 LELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERA 153 (191)
Q Consensus 113 Ls~~~ge~v~v~~~~~~-gw~~~~~~~~g~~G~vP~~~v~~i 153 (191)
-+++.||.+.|+..... +|...+.. .|..|||+..++..-
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~-~g~t~wi~~~~lt~e 88 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDS-SGRTGWILSKNLTSE 88 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEec-CCceEEEechhhccc
Confidence 46889999999998765 79999887 789999998877653
No 99
>KOG0040|consensus
Probab=71.12 E-value=0.11 Score=50.14 Aligned_cols=57 Identities=21% Similarity=0.494 Sum_probs=50.3
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeecccc
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLA 156 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~ 156 (191)
.+.++|+|.-.++.+.+.++||+..++......||.+++ .-..|++|..|++.+.+.
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~--~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEV--NDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchh--hhhcCcchHHHHHHhccC
Confidence 467889999999999999999999888888889999998 567799999999988765
No 100
>KOG3705|consensus
Probab=69.87 E-value=4.2 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=40.7
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEe--CCeeeEecCCchhcc
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~ 74 (191)
+.+++++..+....++.++.|+.+.|-...=++.-.|.+ .++.|+||+.-+++.
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek 566 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK 566 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence 468899999999999999999999776643334344443 468899998766553
No 101
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=68.34 E-value=11 Score=32.78 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=32.0
Q ss_pred cccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCchhcc
Q psy15854 37 SLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYVEQQ 74 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~ 74 (191)
++..|+.+.++.....+|++.+. +|+.|||-..|+..-
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 68889999997644578999998 599999999998864
No 102
>KOG0040|consensus
Probab=66.97 E-value=0.2 Score=48.49 Aligned_cols=57 Identities=21% Similarity=0.599 Sum_probs=50.8
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~ 77 (191)
...++|+|......+.+.++|+++.++...+..||.++..-+.|++|+.|++.+...
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 356789999999999999999999988888899999999999999999999988554
No 103
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=60.60 E-value=15 Score=21.93 Aligned_cols=23 Identities=26% Similarity=0.657 Sum_probs=19.4
Q ss_pred cCCCCCEEEEeEECCCCEEEEEe
Q psy15854 114 ELREGETVFVMEKCDDGWYVGSS 136 (191)
Q Consensus 114 s~~~ge~v~v~~~~~~gw~~~~~ 136 (191)
.+++|+.|.+....+++||.+..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 57899999988777888999875
No 104
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.21 E-value=20 Score=26.19 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=24.1
Q ss_pred cccCCCEEEEEEecCCCEEEEEe-CCeeeEecCCch
Q psy15854 37 SLVKGELVTLIRRVDNNWFEGRI-GTRRGIFPVTYV 71 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v 71 (191)
-+++|.-+.++++. +.|-+.+. +|.+||+..+.+
T Consensus 60 y~k~GlPVEIvqEy-~~WRrirDadG~egWv~qsll 94 (171)
T COG3807 60 YLKKGLPVEIVQEY-DNWRRIRDADGTEGWVHQSLL 94 (171)
T ss_pred eeccCCceehhhhh-hhhhheeCCCCCceeeeeecc
Confidence 45677777777763 46777766 899999865544
No 105
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=52.05 E-value=44 Score=19.89 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=21.4
Q ss_pred cccCCCEEEEEEecCC-CEEEEEeCCeeeEecC
Q psy15854 37 SLVKGELVTLIRRVDN-NWFEGRIGTRRGIFPV 68 (191)
Q Consensus 37 s~~~g~~i~v~~~~~~-~w~~~~~~g~~G~~P~ 68 (191)
.+..|+-+.|++.+.+ .|..+......|||++
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 5677999999998664 6888888888999863
No 106
>KOG4384|consensus
Probab=47.31 E-value=14 Score=30.71 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=47.4
Q ss_pred cEEEeeeccCC--CCCCccCCCCCEEEEeEECCCCEEEEEeCCCCcEEEEcCCCeeeccccc
Q psy15854 98 PYHALYNYKPQ--NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLAL 157 (191)
Q Consensus 98 ~~~~~~d~~~~--~~~eLs~~~ge~v~v~~~~~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~ 157 (191)
.+.+.-+|... +.++|.+++|+++.++.+..-+-|.+-. ++..|-|+..|+..++.++
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~--~~kv~~f~~~~v~~~s~e~ 197 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLL--NNKVGSFKFIYVDVISEEE 197 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccc--cCcccccccceeccccccc
Confidence 35556666654 6678999999999999998888888887 6889999999999988765
No 107
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.96 E-value=34 Score=21.90 Aligned_cols=25 Identities=32% Similarity=0.739 Sum_probs=17.8
Q ss_pred CccCCCCCEEEEeEEC------CCCEEEEEe
Q psy15854 112 ELELREGETVFVMEKC------DDGWYVGSS 136 (191)
Q Consensus 112 eLs~~~ge~v~v~~~~------~~gw~~~~~ 136 (191)
-|.++.|+.+.+-... +..||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 4788999998664433 457999864
No 108
>KOG3580|consensus
Probab=40.94 E-value=54 Score=29.68 Aligned_cols=49 Identities=31% Similarity=0.598 Sum_probs=36.7
Q ss_pred eEEEeecCCCCCCCCccccCCCEEEEEEec----CCCEEEEEeCC-----eeeEecCC
Q psy15854 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV----DNNWFEGRIGT-----RRGIFPVT 69 (191)
Q Consensus 21 ~~~a~~~~~~~~~~els~~~g~~i~v~~~~----~~~w~~~~~~g-----~~G~~P~~ 69 (191)
+.+..|.++......|.|.+|+++.++..- .+.|+..+.+. .+|.+|..
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 356668888899999999999999987752 34677776643 56899853
No 109
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=33.33 E-value=60 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCEEEEeEEC-----CCCEEEEEeCCCCcEEEEcCCCeeeccccchhhh
Q psy15854 118 GETVFVMEKC-----DDGWYVGSSQRSGCFGTFPGNYVERASLALRWVE 161 (191)
Q Consensus 118 ge~v~v~~~~-----~~gw~~~~~~~~g~~G~vP~~~v~~i~~~~~~~~ 161 (191)
|++..|.+.. +-.|...... +|..||+...|+.++.......+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 422 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLS-NGEIGWISTKFIEPFKSNNNIIE 422 (549)
T ss_pred CceEEEcccccccccCcceEEEEec-CCccceeeeeeeeecccCCcccc
Confidence 6676665543 3368888876 89999999999999877654444
No 110
>KOG3580|consensus
Probab=25.57 E-value=1.1e+02 Score=27.71 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=37.5
Q ss_pred cEEEeeeccCCCCCCccCCCCCEEEEeEECC----CCEEEEEeCC---CCcEEEEcCC
Q psy15854 98 PYHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQR---SGCFGTFPGN 148 (191)
Q Consensus 98 ~~~~~~d~~~~~~~eLs~~~ge~v~v~~~~~----~gw~~~~~~~---~g~~G~vP~~ 148 (191)
+.+..|.++...+..|.|.+|++..++...- +.|.-.+... .-..|++|..
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 4567788888899999999999999888652 2366666532 2357888863
No 111
>KOG4384|consensus
Probab=23.42 E-value=44 Score=27.90 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=43.7
Q ss_pred EEEeecCC--CCCCCCccccCCCEEEEEEecCCCEEEEEeCCeeeEecCCchhcccC
Q psy15854 22 ARAKFNFV--AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSR 76 (191)
Q Consensus 22 ~~a~~~~~--~~~~~els~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~ 76 (191)
+.+.-+|. +...+++.+.+|+++.++.+..-+-|.+...++.|.|+.-|+..+..
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~ 195 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISE 195 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccccc
Confidence 44455555 45678888999999999998887888999999999999888887644
Done!