RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15854
(191 letters)
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 130 bits (327), Expect = 2e-38
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+P+ + RA ++ + E++L G++V ++ + ++ W+ ++ +RG P ++
Sbjct: 3 LGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASF 62
Query: 71 VEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG 130
+E + P PY A+ Y DE+ L EGE V V+ K DG
Sbjct: 63 LEPLDSPDETEDPEPNY-------AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115
Query: 131 WYVGSSQRSGCFGTFPGNYVERAS 154
W+V G FP Y++++
Sbjct: 116 WWVIRK--DDVTGYFPSMYLQKSG 137
Score = 71.6 bits (175), Expect = 6e-16
Identities = 20/123 (16%), Positives = 45/123 (36%)
Query: 4 IIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR 63
+ D+ + A + A E+SL++GE V +I ++ + W+ R
Sbjct: 66 LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT 125
Query: 64 GIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV 123
G FP Y+++ + + S H+++ + + R F+
Sbjct: 126 GYFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFL 185
Query: 124 MEK 126
++
Sbjct: 186 QQR 188
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 112 bits (281), Expect = 1e-30
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 27/172 (15%)
Query: 5 IPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RR 63
+ + A KK F F + +L +GE + ++ + + +W+E R
Sbjct: 133 LTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTT 192
Query: 64 GIFPVTYVE------------------------QQSRATPSGAPVDQTLHIDTHSDPVPY 99
G+ P YV+ R + + D
Sbjct: 193 GLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ +L +++G+TV V +K +G Y G G+ P Y+
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD--GQIGSVPHTYLR 302
Score = 92.2 bits (228), Expect = 7e-23
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 2/134 (1%)
Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
+ +++ + E + V L+ ++ + FP
Sbjct: 71 DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130
Query: 79 PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
+ + + + +L +GE + ++ K + W+ +
Sbjct: 131 RVLTEASLLAAYKKPIIE-VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL 189
Query: 139 SGCFGTFPGNYVER 152
G G P NYV+
Sbjct: 190 -GTTGLVPANYVQI 202
Score = 62.2 bits (150), Expect = 6e-12
Identities = 14/72 (19%), Positives = 31/72 (43%)
Query: 1 MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
S+ D I P+ ++ + A +L + KG+ V + +++ N ++ +
Sbjct: 231 SSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELD 290
Query: 61 TRRGIFPVTYVE 72
+ G P TY+
Sbjct: 291 GQIGSVPHTYLR 302
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 99.6 bits (249), Expect = 3e-28
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ S PY A+Y Y+PQN+DELELREG+ V VM++CDDGW+VG S+R+ FGTFPGNYV
Sbjct: 3 SGSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
Query: 152 RAS 154
S
Sbjct: 63 PVS 65
Score = 60.7 bits (148), Expect = 4e-13
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRAT 78
RA + + Q EL L +G+ V ++++ D+ WF G + G FP YV S
Sbjct: 9 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG-P 67
Query: 79 PSG 81
SG
Sbjct: 68 SSG 70
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 98.0 bits (245), Expect = 1e-27
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 98 PYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
+ A++ + P+++DELEL + + V + +D WY + R+G G FP Y +
Sbjct: 5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Score = 58.7 bits (143), Expect = 2e-12
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYVEQQ 74
SE RA F FV + EL L + + + + ++ W+E R G RG+FP Y +
Sbjct: 2 SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG-ARGVFPAYYAIEV 60
Query: 75 SR 76
++
Sbjct: 61 TK 62
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 97.7 bits (244), Expect = 2e-27
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 91 DTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ + A++ + P+++DELEL + + V + +D WY + R+G G FP Y
Sbjct: 1 NGEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
Query: 151 ERAS 154
+
Sbjct: 61 IEVT 64
Score = 56.5 bits (137), Expect = 2e-11
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTRRGIFPVTYVE 72
+ E RA F FV + EL L + + + + ++ W+E R G RG+FP Y
Sbjct: 3 EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG-ARGVFPAYYAI 61
Query: 73 QQSRATPSGA 82
+ ++ A
Sbjct: 62 EVTKEPEHMA 71
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 95.0 bits (237), Expect = 2e-26
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
Y A+Y+Y Q++DE+ R+G+ + ++ DDGW G+ QR+G G P NY+E +
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64
Score = 56.5 bits (137), Expect = 2e-11
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
RA +++ AQ E+S G+ + ++ +D+ W G + R G+ P Y+E
Sbjct: 8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 94.9 bits (236), Expect = 5e-26
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 98 PYHALYNYKPQNDDELELREGETVFVMEK----CDDGWYVGSSQRSGCFGTFPGNYVERA 153
+Y Y PQNDDELEL G+ +F+ +GW G+S +GC G P NY+ +A
Sbjct: 18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77
Query: 154 SLALRWVENAS 164
W+ + S
Sbjct: 78 DECSTWIFHGS 88
Score = 49.0 bits (117), Expect = 2e-08
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR----VDNNWFEGRIGT--RRGIFP 67
+ + + + + Q EL LV G+ + + W G T G+ P
Sbjct: 11 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70
Query: 68 VTYVEQQSRA 77
Y+ +
Sbjct: 71 ENYITKADEC 80
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 93.5 bits (233), Expect = 1e-25
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+ND+EL L EG+ VF+ K GW V ++ G P +V
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
Score = 59.6 bits (145), Expect = 1e-12
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWF--EGRIGTRRGIFPVTYVE 72
+A A ++F + EL L +G++V + + W E G++ G+ P +V
Sbjct: 7 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 93.0 bits (232), Expect = 1e-25
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
S + AL+ Y +EL+L++GE + V+ K DGW G S +G G FP +YV
Sbjct: 5 SSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV 64
Query: 154 S 154
S
Sbjct: 65 S 65
Score = 57.6 bits (140), Expect = 5e-12
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRAT 78
A + A EL L KGE + ++ + + W +G R GIFP YV S
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG-P 67
Query: 79 PSG 81
SG
Sbjct: 68 SSG 70
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 92.2 bits (230), Expect = 2e-25
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+ND+EL L EG+ VF+ K GW V ++ G P +V
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
Score = 60.3 bits (147), Expect = 4e-13
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVE 72
+A A ++F + EL L +G++V + + W G++ G+ P +V
Sbjct: 3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 96.2 bits (238), Expect = 2e-24
Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 30/159 (18%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRATP 79
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+ A+
Sbjct: 136 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 195
Query: 80 SGAPVDQTLHIDTHSDPVPYH---------------------------ALYNYKPQNDDE 112
S + + +H P+ +
Sbjct: 196 SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTA 255
Query: 113 LELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
L L GE V V + G + G G G FP +V
Sbjct: 256 LALEVGELVKVTKINVSGQWEGECN--GKRGHFPFTHVR 292
Score = 66.9 bits (162), Expect = 1e-13
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ K A L+L GELV + + + +EG +RG FP T+V + P
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE 300
Score = 58.8 bits (141), Expect = 7e-11
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 79 PSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR 138
P + I + AL+++ ++++L ++G+ + + +K ++ W+
Sbjct: 117 PVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA-EDS 175
Query: 139 SGCFGTFPGNYVE 151
G G P YVE
Sbjct: 176 EGKRGMIPVPYVE 188
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 88.4 bits (220), Expect = 8e-24
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
S + L+ + P+ +EL++ G VFV++K +D W +G G P NY+E
Sbjct: 5 SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATV--MFNGQKGLVPCNYLEPV 62
Query: 154 S 154
S
Sbjct: 63 S 63
Score = 66.4 bits (163), Expect = 3e-15
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
R F FV +T EL ++ G +V ++++ ++NW ++G+ P Y+E S
Sbjct: 9 AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 94.3 bits (233), Expect = 1e-23
Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 39/166 (23%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE--------- 72
R ++F +L KGE++ +I + + W+ R R G+ PV YVE
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHG 188
Query: 73 ---------------------------QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNY 105
+ + GA +
Sbjct: 189 KHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248
Query: 106 KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ L L G+ V V +G + G + +G G FP +V+
Sbjct: 249 CAYDKTALALEVGDIVKVTRMNINGQWEG--EVNGRKGLFPFTHVK 292
Score = 64.6 bits (156), Expect = 8e-13
Identities = 19/80 (23%), Positives = 32/80 (40%)
Query: 1 MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
S + + +A K A L+L G++V + R N +EG +
Sbjct: 221 GSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 280
Query: 61 TRRGIFPVTYVEQQSRATPS 80
R+G+FP T+V+ P
Sbjct: 281 GRKGLFPFTHVKIFDPQNPD 300
Score = 55.8 bits (133), Expect = 8e-10
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 85 DQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT 144
+ LY++ + ++L ++GE + ++EK ++ W+ + + G G
Sbjct: 114 SAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARN-KDGRVGM 172
Query: 145 FPGNYVE 151
P YVE
Sbjct: 173 IPVPYVE 179
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 92.4 bits (228), Expect = 9e-23
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 23/157 (14%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++V+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE 235
Query: 81 GAPV----------------DQTLHIDTHSDPV---PYHALYNYKPQNDDELELR--EGE 119
P D + D S P+ + D L R EG+
Sbjct: 236 DDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD 295
Query: 120 TVFVMEKCDDGWYVG-SSQRSGCFGTFPGN-YVERAS 154
V ++ D V + FP ++ +
Sbjct: 296 LVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD 332
Score = 63.1 bits (152), Expect = 3e-12
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 10 IRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVT 69
+ T P K+ G + L + ++
Sbjct: 88 LPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQ 147
Query: 70 YVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD 129
+ + T V + AL+++ + EL + G+ +F++ + +
Sbjct: 148 ALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINK 207
Query: 130 GWYVGSSQRSGCFGTFPGNYVE 151
W G+ G G FP ++V+
Sbjct: 208 DWLEGTV--RGATGIFPLSFVK 227
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 86.2 bits (213), Expect = 1e-22
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 88 LHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWY 132
L + Y ALY ++ + ++LEL G+ + V E+C GW
Sbjct: 3 LGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWM 62
Query: 133 VGSSQRSGCFGTFPGNYVER 152
G ++R+ G FPG YVE
Sbjct: 63 PGLNERTRQRGDFPGTYVEF 82
Score = 43.4 bits (102), Expect = 2e-06
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---------------WFEGRIGT--RR 63
Q RA + F + +L L+ G+++ + R W G +R
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 64 GIFPVTYVE 72
G FP TYVE
Sbjct: 73 GDFPGTYVE 81
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 82.8 bits (204), Expect = 2e-21
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFV-------------MEKCDD--GWYVGSSQR 138
++ Y ALY+YK + +++++L G+ + V E + GW G ++
Sbjct: 3 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62
Query: 139 SGCFGTFPGNYVER 152
+G G FPG YVE
Sbjct: 63 TGERGDFPGTYVEY 76
Score = 37.4 bits (86), Expect = 3e-04
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 18 SEG-QARAKFNFVAQTHLELSLVKGELVTLIRRV---------------DNNWFEGRIGT 61
+EG Q RA +++ + ++ L G+++T+ + + W G T
Sbjct: 3 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62
Query: 62 --RRGIFPVTYVEQQSRATPS 80
RG FP TYVE R S
Sbjct: 63 TGERGDFPGTYVEYIGRKKIS 83
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 80.4 bits (199), Expect = 1e-20
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 98 PYHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+ Y K + DE+ +G+ V + +DGW ++ R+ G + VE S
Sbjct: 9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS 66
Score = 49.2 bits (118), Expect = 8e-09
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQSRA 77
+ RA + E+S +KG++ + +++ W +G+ VE+ S
Sbjct: 9 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSGP 68
Query: 78 TPSG 81
+ SG
Sbjct: 69 S-SG 71
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 80.4 bits (199), Expect = 1e-20
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
S Y ALY+Y QN DEL+L G+ + V+ + +DGW+ +R+G G PG+Y+E+
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTV--ERNGQRGFVPGSYLEKL 63
Query: 154 S 154
S
Sbjct: 64 S 64
Score = 64.6 bits (158), Expect = 1e-14
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ RA +++ AQ EL L G+++ +I ++ W+ +RG P +Y+E+ S S
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS-GPSS 68
Query: 81 G 81
G
Sbjct: 69 G 69
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 81.0 bits (200), Expect = 1e-20
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 80 SGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS 139
SG P ++ + +P + +NY + +DEL L +G V VMEKC DGW+ GS
Sbjct: 6 SGDPGERL-----YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN-- 58
Query: 140 GCFGTFPGNYVE 151
G G FP NYV
Sbjct: 59 GQVGWFPSNYVT 70
Score = 67.9 bits (166), Expect = 1e-15
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A KFN++A+ ELSL+KG V ++ + + W+ G + G FP YV ++ +
Sbjct: 19 PAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG 78
Query: 81 GAP 83
Sbjct: 79 DHV 81
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 80.5 bits (199), Expect = 1e-20
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ + DE+ L++ + V V+++ +DGW G R G G FP ++
Sbjct: 22 ITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFAR 71
Score = 52.4 bits (126), Expect = 7e-10
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG-RIGT-RRGIFPVTYVE 72
Q F A+ E++L + ++V ++++ D W G R+ G FP +
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFAR 71
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 80.9 bits (200), Expect = 1e-20
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 62 RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPY-HALYNYKPQNDDELELREGET 120
++G FP ++V+ ++ P PV A+Y+Y N+DEL +G+
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFH---------PVCQVIAMYDYAANNEDELSFSKGQL 58
Query: 121 VFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ VM K D W+ G G G FP NYV+
Sbjct: 59 INVMNKDDPDWWQGEIN--GVTGLFPSNYVK 87
Score = 76.3 bits (188), Expect = 8e-19
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 3 SIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR 62
++ R P Q A +++ A ELS KG+L+ ++ + D +W++G I
Sbjct: 18 KLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77
Query: 63 RGIFPVTYVEQQSRATPSGA 82
G+FP YV+ + ++ +
Sbjct: 78 TGLFPSNYVKMTTDSSGPSS 97
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 79.7 bits (197), Expect = 2e-20
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 82 APVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC 141
+ TL + + ALY+Y+ +D+L +GE ++ + W+ S +G
Sbjct: 1 GSMTGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE 60
Query: 142 FGTFPGNYVERA 153
G P NYV
Sbjct: 61 TGYIPSNYVAPV 72
Score = 53.8 bits (130), Expect = 2e-10
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
A +++ A T +LS KGE ++ + +W+E R T G P YV
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 78.5 bits (194), Expect = 6e-20
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
+ ALY+Y+ + +D+L +GE ++ + W+ S +G G P Y+
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
Score = 52.4 bits (126), Expect = 6e-10
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSRATPS 80
A +++ A+T +LS KGE ++ + +W+E R T G P Y+ R
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYK 68
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 78.1 bits (193), Expect = 9e-20
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
G+A AKFNF T +E+S KGE +TL+R+VD NW+EGRI +R+GIFP+TYV+
Sbjct: 5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
Score = 70.7 bits (174), Expect = 5e-17
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A +N+ E+ R+GE + ++ + D+ WY G + G FP YV+
Sbjct: 11 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 77.7 bits (192), Expect = 1e-19
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+A AKF++V +T ELS KG + L +R ++W+EGR G+ P Y+ Q + PS
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70
Score = 69.6 bits (171), Expect = 1e-16
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+P+ A ++Y + EL ++G ++ + ++ D W+ G + +G G P Y+
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG--RHNGIDGLIPHQYIV 62
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 77.2 bits (191), Expect = 1e-19
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+ +A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++V+
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
Score = 66.4 bits (163), Expect = 2e-15
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL+++ + EL + G+ +F++ + + W G+ + G G FP ++V+
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GATGIFPLSFVK 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 77.1 bits (190), Expect = 3e-19
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTY 70
+ L G+A A++ F +ELS KGE + LIR+V+ NW+EGRI R+GIFP +Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 71 VEQQSRATPSGAP 83
V+
Sbjct: 71 VQVSREPRLRLCD 83
Score = 73.2 bits (180), Expect = 1e-17
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y +K + EL R+GE + ++ K ++ WY G +G G FP +YV+
Sbjct: 22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 76.1 bits (188), Expect = 3e-19
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+ G FP N+V+
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 54
Score = 65.7 bits (161), Expect = 4e-15
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
Q + F ++ Q EL L G+++ + V+ W+ G + + G+FP +V+
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 75.7 bits (187), Expect = 5e-19
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
L+ Y PQN+DELEL+ G+ + + E+ ++GW+ G+ G FP N+V+
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--NKLGLFPSNFVK 60
Score = 67.7 bits (166), Expect = 8e-16
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
P + Q + F ++ Q EL L G+++ + V+ W+ G + + G+FP +V+
Sbjct: 1 GPLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 75.4 bits (186), Expect = 8e-19
Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
S G+A AKFNF T +E+S KGE +TL+R+VD NW+EGRI +R+GIFP+TYV+
Sbjct: 6 SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Score = 73.4 bits (181), Expect = 5e-18
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A +N+ E+ R+GE + ++ + D+ WY G + G FP YV+
Sbjct: 12 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 75.1 bits (185), Expect = 1e-18
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
S + ALY+Y +L +GE ++E W+ S +G G P NYV
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63
Query: 154 S 154
Sbjct: 64 D 64
Score = 53.5 bits (129), Expect = 3e-10
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQS 75
A +++ A +LS KGE ++ +W+E R T G P YV
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 74.6 bits (184), Expect = 2e-18
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++Y PQNDDELEL+ G+ + V+ + ++GW+ G G G FP N+++
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--GKTGMFPSNFIK 60
Score = 65.7 bits (161), Expect = 5e-15
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ + F+++ Q EL L G+++ ++ V+ W+EG + + G+FP ++++ S S
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS-GPSS 67
Query: 81 G 81
G
Sbjct: 68 G 68
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 74.6 bits (184), Expect = 2e-18
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+++ +A A F+F + LEL+ G+++ L+ R++ +W EG + GIFP+++
Sbjct: 10 HHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSF 69
Query: 71 VE 72
V+
Sbjct: 70 VK 71
Score = 68.1 bits (167), Expect = 8e-16
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 83 PVDQTLHIDTHSDPVPY-HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGC 141
V H P AL+++ + EL + G+ +F++ + + W G+ + G
Sbjct: 4 KVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR--GA 61
Query: 142 FGTFPGNYVE 151
G FP ++V+
Sbjct: 62 TGIFPLSFVK 71
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 75.2 bits (185), Expect = 3e-18
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 77 ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
A+ S + V + + ALY+Y+ + ++L ++GE ++ + W+ S
Sbjct: 8 ASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARS 67
Query: 137 QRSGCFGTFPGNYVERAS 154
+G G P NYV A
Sbjct: 68 IATGKSGYIPSNYVVPAD 85
Score = 49.8 bits (119), Expect = 1e-08
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPV 68
A +++ A+T +LS KGE +I + +W+E R + G P
Sbjct: 19 YPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPS 78
Query: 69 TYVE 72
YV
Sbjct: 79 NYVV 82
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 73.6 bits (181), Expect = 4e-18
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 99 YHALYNY-KPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A+ Y K + DE+ +G+ V + +DGW ++ R+ G + VE
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
Score = 45.5 bits (108), Expect = 2e-07
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSR 76
+ RA + E+S +KG++ + +++ W +G+ VE+ R
Sbjct: 7 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR 65
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 73.6 bits (181), Expect = 5e-18
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVG---SSQRSGCFGTFPGNYVE 151
Y ++L L G+ + +++K GW+ G + + G FP ++V+
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
Score = 60.9 bits (148), Expect = 4e-13
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-----RGIFPVTYVE 72
A+ +VA +LSL G+L+ ++++ + W++G + R +G FP ++V+
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 72.6 bits (179), Expect = 7e-18
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y+Y D+EL E + + +E DD W++G ++ G G FP NYV
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
Score = 58.0 bits (141), Expect = 3e-12
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
A A++++ A EL+ V+ + + I VD++W+ G + +G+FP YV
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 73.6 bits (181), Expect = 9e-18
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++Y PQNDDELEL+ G+ + V+ + ++GW+ G +G G FP N+++
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV--LNGKTGMFPSNFIK 71
Score = 69.0 bits (169), Expect = 4e-16
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ + F+++ Q EL L G+++ ++ V+ W+EG + + G+FP ++++ S +
Sbjct: 20 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDE 79
Query: 81 GAPVDQTLHIDTH 93
H H
Sbjct: 80 LGISQDEHHHHHH 92
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 72.6 bits (179), Expect = 9e-18
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ S + ALY ++P+ DEL EG+ +++ + D W+ G+S+ G G P NYV
Sbjct: 3 SGSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVA 60
Score = 68.4 bits (168), Expect = 5e-16
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
RA + F +T EL +G+++ + D NW++G R G+ P YV +QS
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 72.2 bits (178), Expect = 1e-17
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
Q A F++ A +L +G+++ ++ +V+ W EG + GIFP +VE +
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
Score = 68.0 bits (167), Expect = 5e-16
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL++Y+ ++LE +EG+ + V+ K ++ W G S+ G G FP +VE ++
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--GKVGIFPKVFVEDSA 61
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 75.2 bits (184), Expect = 1e-17
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 26 FNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVD 85
++ + E + V L+ ++ + FP
Sbjct: 49 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108
Query: 86 QTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTF 145
+ + + + +L +GE + ++ K + W+ + G G
Sbjct: 109 LLAAY-KKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLV 166
Query: 146 PGNYVE 151
P NYV+
Sbjct: 167 PANYVQ 172
Score = 58.3 bits (140), Expect = 4e-11
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 1 MSSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIG 60
++ + A KK F F + +L +GE + ++ + + +W+E R
Sbjct: 100 KMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA 159
Query: 61 T-RRGIFPVTYVEQQ 74
G+ P YV+ Q
Sbjct: 160 LGTTGLVPANYVQIQ 174
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 72.3 bits (178), Expect = 1e-17
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y + NYK Q + EL L+ GE V V+EK + GW+ S G P Y+E
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV--STSEEQGWVPATYLE 61
Score = 70.0 bits (172), Expect = 1e-16
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
Q N+ Q + ELSL GE+V +I + ++ W+ +G P TY+E Q+ S
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS 69
Query: 81 G 81
G
Sbjct: 70 G 70
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 72.3 bits (178), Expect = 1e-17
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+ + +A+FNF ELS+ KG+++ + R + W+EG + R G FP Y
Sbjct: 2 SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNY 61
Query: 71 VEQQSRATPSG 81
V + + SG
Sbjct: 62 VREIKSSERSG 72
Score = 70.4 bits (173), Expect = 8e-17
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
S + A +N+K N+DEL + +G+ ++V + GW+ G+ G G FP NYV
Sbjct: 8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN--GRTGWFPSNYVR 63
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 72.3 bits (178), Expect = 1e-17
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
ARAKF+F AQT EL L KG++V + +++D NW+EG R GIFP TY+E
Sbjct: 9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 70.3 bits (173), Expect = 7e-17
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
S P A +++K Q EL L++G+ V++ ++ D WY G G G FP Y+E
Sbjct: 5 SSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--GRVGIFPRTYIE 60
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 72.0 bits (177), Expect = 1e-17
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 94 SDPVPYHALYNYKP-QNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
S + A++++ N L +EG+ + ++ + DGW+ G S+++ G FP +Y
Sbjct: 5 SGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTR 64
Score = 51.2 bits (123), Expect = 1e-09
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 13 APKKLSEGQARAKFNFVA-QTHLELSLVKGELVT-LIRRVDNNWFEGRIGT--RRGIFPV 68
P + +A F+ A LS +G+L+T L+ + W G RG FP
Sbjct: 1 GPLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPF 60
Query: 69 TYVE 72
+Y
Sbjct: 61 SYTR 64
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 72.4 bits (178), Expect = 2e-17
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 77 ATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
++ S D+ + + ALY+Y+ DDE+ + + +E DDGW+ G
Sbjct: 2 SSGSSGTYDE----YENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC 57
Query: 137 QRSGCFGTFPGNYVE 151
+ G +G FP NYVE
Sbjct: 58 K--GRYGLFPANYVE 70
Score = 67.8 bits (166), Expect = 1e-15
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A A +++ A E+S +++T I +D+ W+ G R G+FP YVE + S
Sbjct: 19 TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78
Query: 81 G 81
G
Sbjct: 79 G 79
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 72.0 bits (177), Expect = 2e-17
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
Y + Y Q+ DE+ +G TV V+ K +GW+ G G P +Y+++A
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--GKEGWAPASYLKKAK 64
Score = 66.2 bits (162), Expect = 3e-15
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
E + + +Q+ E+ KG V +IR+ W+ R + G P +Y+++ +
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS 66
Query: 78 TPS 80
PS
Sbjct: 67 GPS 69
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 71.4 bits (175), Expect = 2e-17
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+P + Y + +DEL L G V VME C DGW+ G +G G FP NYV
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRG--SYNGQIGWFPSNYVL 54
Score = 59.5 bits (144), Expect = 1e-12
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQ 73
A F +VA+ ELSLV G VT++ + W+ G + G FP YV +
Sbjct: 3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 71.5 bits (176), Expect = 2e-17
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A+A N+ + +L KG+++ L R++D NW++G I GIFP + VE
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
Score = 68.4 bits (168), Expect = 4e-16
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL NY+ +N +L+ +G+ + + + D+ WY G G G FP + VE
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN--GVSGIFPASSVE 60
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 71.5 bits (176), Expect = 3e-17
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 16 KLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
L + +A ++F + EL +G+L+TL ++D NW+EG + + G FP++YV+
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66
Score = 69.2 bits (170), Expect = 3e-16
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+ND EL REG+ + + + D+ WY G G G FP +YV+
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLH--GQSGFFPLSYVQ 66
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY ++P+ DEL EG+ +++ + D W+ G+S+ G G P NYV
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAE 57
Score = 70.3 bits (173), Expect = 6e-17
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
RA + F +T EL +G+++ + D NW++G R G+ P YV +Q
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++Y+ Q+DDEL + GE + + K D GW+ G G G FP N+V
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN--GRRGLFPDNFVR 54
Score = 65.6 bits (161), Expect = 4e-15
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A +F++ AQ EL++ GE++T IR+ D W+EG+I RRG+FP +V
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 71.6 bits (176), Expect = 3e-17
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A+Y+Y +DEL +EG ++V++K DDGWY G G G FPGNYVE
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN--GVTGLFPGNYVE 70
Score = 65.8 bits (161), Expect = 5e-15
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+ + A +++ ELS +G ++ +I++ D+ W+EG + G+FP YV
Sbjct: 10 PWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
Query: 72 E 72
E
Sbjct: 70 E 70
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 71.1 bits (175), Expect = 3e-17
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
AR KF+F AQ+ EL+L KG++V + + VD NW EG R GIFP YVE
Sbjct: 3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
Score = 71.1 bits (175), Expect = 3e-17
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++++ Q+ EL L++G+ V++ ++ D W G G G FP NYVE
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH--GRLGIFPANYVE 54
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 73.6 bits (180), Expect = 3e-17
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 21/130 (16%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQ--- 73
+ G A+A+++F A+ ELSL +G+++ ++ + W+ G I R G FP YVE+
Sbjct: 4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63
Query: 74 ----------------QSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELRE 117
+ + T + Y D E +
Sbjct: 64 EYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDD 123
Query: 118 GETVF-VMEK 126
F V E
Sbjct: 124 ATKTFTVTEH 133
Score = 61.2 bits (148), Expect = 2e-12
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVER 152
A Y++ ++ EL L+EG+ + ++ K GW+ G G G FP NYVE
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--GRIGWFPSNYVEE 60
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 4e-17
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
R ++F + EL +G+++TL ++D NW+EG I G FP+ YVE
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
Score = 68.4 bits (168), Expect = 5e-16
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
LY+++P+N EL +EG+ + + + D+ WY G G G FP NYVE
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH--GESGFFPINYVE 56
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 71.7 bits (176), Expect = 4e-17
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYV 71
+ + +AR +++ A ELSL+ E++T+ +D++W G G ++G P+TY+
Sbjct: 12 KESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
Query: 72 EQQSRATPSG 81
E + SG
Sbjct: 72 ELLNSGPSSG 81
Score = 64.3 bits (157), Expect = 2e-14
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
LY+Y N EL L E + V D W +G +R G P Y+E
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQKGKVPITYLE 72
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 70.7 bits (174), Expect = 4e-17
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
S A AKF++V ++ ELS KG + L R +W+EGR G+ P Y+
Sbjct: 5 SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 64.9 bits (159), Expect = 8e-15
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A ++Y ++ EL ++G ++ + + + W+ G G G P Y+
Sbjct: 11 AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN--GIDGLVPHQYIV 59
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 72.4 bits (177), Expect = 5e-17
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 69 TYVEQQSRATPSGAPVDQTLHIDTHSDPVPYH----ALYNYKPQNDDELELREGETVFVM 124
V + S V+ + P + A ++Y + DEL+L+ G+ V V+
Sbjct: 13 GLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVI 72
Query: 125 -----EKCDDGWYVGSSQRS--------GCFGTFPGNYVER 152
E+ D+GW +G + C G FP N+ ER
Sbjct: 73 PFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113
Score = 45.5 bits (107), Expect = 6e-07
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEG----------RIGTRRGI 65
+ +A+ ++ A EL L G++V +I D W G + RG+
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105
Query: 66 FPVTYVE 72
FP + E
Sbjct: 106 FPENFTE 112
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 71.2 bits (175), Expect = 5e-17
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++ + DDEL L +G+ V + EK ++GW+ GS G G FP YVE
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKKGHFPAAYVE 60
Score = 67.4 bits (165), Expect = 1e-15
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+A ++F A+ EL+L KG++V + + + W+ G + ++G FP YVE+ +
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGN 68
Query: 81 GAP 83
A
Sbjct: 69 TAT 71
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 70.4 bits (173), Expect = 7e-17
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
LY++ +N +EL + + E + V+E W + S RSG G P N + AS
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS--RSGQAGYVPCNILGEAS 63
Score = 54.9 bits (133), Expect = 5e-11
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
+ ++F A+ ELS++K E++ ++ W + G P + + S
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS 63
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 70.3 bits (173), Expect = 9e-17
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y P N ++L+LR+G+ F++E+ + W+ ++G G P NYV A
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD-KNGQEGYIPSNYVTEAE 65
Score = 58.4 bits (142), Expect = 3e-12
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
+ A ++++ +L L KG+ ++ + W+ R + G P YV +
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 70.0 bits (172), Expect = 1e-16
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A +N++ N+DEL +G+ + V + GW+ G+ G G FP NYV
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVR 57
Score = 67.6 bits (166), Expect = 7e-16
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
RAKFNF ELS KG+++ + R + W+EG R G FP YV
Sbjct: 6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 71.4 bits (175), Expect = 1e-16
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
LY++K + DEL GE +F+ + W++ R G G P +V
Sbjct: 10 VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVS 61
Score = 71.0 bits (174), Expect = 1e-16
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR---RGIFPVTYVEQQSRAT 78
A ++F A+ EL+ GE + + + WF + R G+ PV +V AT
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67
Query: 79 PSGAPVDQTLHIDTHSDP 96
D I + + P
Sbjct: 68 GYATGNDVIEDIKSVNLP 85
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 70.1 bits (172), Expect = 1e-16
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+ +A A F + +T ELS +G+++ L R ++W+ G RG+ P Y+
Sbjct: 3 SGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
Query: 72 E 72
Sbjct: 63 T 63
Score = 62.0 bits (151), Expect = 1e-13
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A + Y + EL R G+ + + E+ W+ G G G P Y+
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHN--GMRGLIPHKYIT 63
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 76.1 bits (186), Expect = 1e-16
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 59 IGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYH---ALYNYKPQNDDELEL 115
+ T E P + +L + H A+Y ++P+ DE+ +
Sbjct: 402 VCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPM 461
Query: 116 REGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
G+ + V DG+ G +++ G G +P V
Sbjct: 462 EPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
Score = 42.5 bits (99), Expect = 3e-05
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR-IGT-RRGIFPVTYVEQQSRAT 78
A + +T E+ + G+++ + + + +G R G++P V ++
Sbjct: 444 NQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETV 503
Query: 79 PSGAPVDQTLHIDTHSDPVPYHA 101
+ H +H
Sbjct: 504 KYPTYPEAEKAGGGHH---HHHH 523
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 69.6 bits (171), Expect = 1e-16
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
A +N++ N+DEL +G+ + V + GW+ G+ G G FP NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN--GRTGWFPSNYVR 59
Score = 68.0 bits (167), Expect = 5e-16
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
RAKFNF ELS KG+++ + R + W+EG R G FP YV
Sbjct: 8 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 69.2 bits (170), Expect = 1e-16
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 99 YHALYNYKPQND-DELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ A Y++ EL L++G+ +++ + GW +G G P Y++
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
Score = 57.6 bits (140), Expect = 5e-12
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
A ++F EL L KG+++ + R + W G++ G++ G P Y++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 69.7 bits (171), Expect = 2e-16
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 81 GAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSG 140
G H++ + A+Y+++ D+EL + GE + V++ D W+ G +
Sbjct: 2 GHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--Q 59
Query: 141 CFGTFPGNYVE 151
G FP N+V
Sbjct: 60 GIGLFPSNFVT 70
Score = 64.6 bits (158), Expect = 1e-14
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI 65
+ + + RA ++F A EL+ GE++T++ D NW++G G+
Sbjct: 4 HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGL 63
Query: 66 FPVTYVE 72
FP +V
Sbjct: 64 FPSNFVT 70
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 69.2 bits (170), Expect = 2e-16
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ DDE+ + + +E DDGW+ G + G +G FP NYVE
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--GRYGLFPANYVE 62
Score = 63.0 bits (154), Expect = 4e-14
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A A +++ A E+S +++T I +D+ W+ G R G+FP YVE
Sbjct: 11 TAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 69.2 bits (170), Expect = 2e-16
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
RA ++F + EL +G+++TL ++D NW+EG + G FP+ YVE S
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 81 G 81
G
Sbjct: 69 G 69
Score = 68.1 bits (167), Expect = 6e-16
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++P+N+ EL +EG+ + + + D+ WY G G G FP NYVE
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GHSGFFPINYVE 60
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 69.8 bits (171), Expect = 2e-16
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+ RA ++F A EL+ GE++ ++ D NW++G G+FP +
Sbjct: 9 EIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNF 68
Query: 71 VEQQSRATPSGAP 83
V A
Sbjct: 69 VTTNLNIETEAAA 81
Score = 68.2 bits (167), Expect = 9e-16
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++ D+EL + GE + V++ D W+ G + G FP N+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH--RGIGLFPSNFVT 70
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 68.8 bits (169), Expect = 3e-16
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
S ALY+YK + DEL G + + K GW+ G + FP NYVE
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY-GTRIQQYFPSNYVE 61
Score = 60.7 bits (148), Expect = 4e-13
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTR-RGIFPVTYVEQQS 75
S +A +++ A+ EL+ +G L+ + + W++G GTR + FP YVE S
Sbjct: 6 SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 68.3 bits (168), Expect = 3e-16
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY + PQ D +L L+ G+ V ++EK WY GS G G FP NYV+
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN--GRTGIFPANYVK 55
Score = 66.8 bits (164), Expect = 1e-15
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
A + F Q +L L G+ V L+ ++ W++G R GIFP YV+
Sbjct: 4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.4 bits (168), Expect = 4e-16
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY + PQ +++LE+R G+ + ++E ++ W+ G Q G FP N+V+R S
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--DRIGFFPANFVQRLS 63
Score = 66.1 bits (162), Expect = 3e-15
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A + FV Q + +L + G+++TL+ + +W++G+I R G FP +V++ S S
Sbjct: 9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS-GPSS 67
Query: 81 G 81
G
Sbjct: 68 G 68
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 68.0 bits (167), Expect = 5e-16
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+ +Y ++ +L GE + ++ + W+ G +R+GC G P N+V + S
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWG--ERAGCCGYIPANHVGKHS 63
Score = 64.2 bits (157), Expect = 2e-14
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ A ++ A +LS ++GE + ++R+ +W+ G G P +V + S + S
Sbjct: 9 EFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGPS-S 67
Query: 81 G 81
G
Sbjct: 68 G 68
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 68.7 bits (168), Expect = 5e-16
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 73 QQSRATPSGAPVDQTLHIDTHSDPVP--YHALYNYKPQNDDELELREGETVFVMEK---- 126
++ + + P + A+++Y+ D+EL LR G+ V V+ +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAV 63
Query: 127 -CDDGWYVGSSQRSGCFGTFPGNYVE 151
D+GW+ G G G FP NYV
Sbjct: 64 SGDEGWWTGQLPS-GRVGVFPSNYVA 88
Score = 54.1 bits (130), Expect = 2e-10
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-----VDNNWFEGRIG 60
++ + A F++ A EL+L +G+ V ++ + D W+ G++
Sbjct: 16 ENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP 75
Query: 61 T-RRGIFPVTYVE 72
+ R G+FP YV
Sbjct: 76 SGRVGVFPSNYVA 88
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 67.7 bits (166), Expect = 6e-16
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
AL++Y+P +D +L +GE + ++E+ + W+ S +G G P N+V +A
Sbjct: 9 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 62
Score = 46.5 bits (111), Expect = 6e-08
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQ 73
L + A ++ +L KGE + ++ + W++ + T + G P +V +
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK 61
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 68.1 bits (167), Expect = 6e-16
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y A+ ++ Q +L ++GE + V+EK DGW++ + G G P Y+E
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAK-GNEGLVPRTYLE 64
Score = 59.2 bits (144), Expect = 1e-12
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
+ A +F AQ +L+ KGE++ +I + + W+ + G+ P TY+E S
Sbjct: 12 EYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 68.2 bits (167), Expect = 6e-16
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF---GTFPGNYVERAS 154
Y L+++K + D+EL R G+ V K + W+ +G G P NY+
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
Score = 53.9 bits (130), Expect = 2e-10
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-----RRGIFPVTYVEQQS 75
+ ++F ++T ELS G++ + R+ + W+ + +G P Y+ ++
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 68.2 bits (167), Expect = 7e-16
Identities = 13/63 (20%), Positives = 34/63 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV++ A +
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 63
Query: 81 GAP 83
Sbjct: 64 SRE 66
Score = 63.6 bits (155), Expect = 4e-14
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ ++ E+ +++G+ + ++ + W+ G P YV+
Sbjct: 7 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVK 55
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 67.6 bits (166), Expect = 8e-16
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY Y Q+ DEL + + ++++ GW+ G + G G FP NYV
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQGLFPNNYVT 58
Score = 66.1 bits (162), Expect = 2e-15
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
P L Q +A + + AQ ELS +++ +I+ + W+ GR+ ++G+FP YV
Sbjct: 1 GP--LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 67.7 bits (166), Expect = 8e-16
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVEQQS 75
S G A A++NF A+ ELSL +G++V + R+ D W++G R G FP TYVE++
Sbjct: 6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Query: 76 RATPSGA 82
+ +
Sbjct: 66 IQSGPSS 72
Score = 66.2 bits (162), Expect = 3e-15
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVE 151
A YN+ ++ EL LREG+ V + + D GW+ G + G G FP YVE
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN--GRIGWFPSTYVE 62
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 67.8 bits (166), Expect = 9e-16
Identities = 13/71 (18%), Positives = 36/71 (50%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+ + A +++ ++ E+++ KG+++TL+ + +W++ + R+G P Y
Sbjct: 9 HHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 68
Query: 71 VEQQSRATPSG 81
V++ + A
Sbjct: 69 VKKLAAAWSHP 79
Score = 62.4 bits (152), Expect = 1e-13
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ G P YV++
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 71
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 67.9 bits (166), Expect = 9e-16
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 75 SRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG 134
P+ + + S+ + ALY+Y+ + ++L ++G+ + V+E+ + W
Sbjct: 4 GSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK-A 62
Query: 135 SSQRSGCFGTFPGNYVERA 153
S + G P NYV R
Sbjct: 63 RSLATRKEGYIPSNYVARV 81
Score = 48.2 bits (115), Expect = 3e-08
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVT 69
+ A +++ A H +LS KG+ + ++ W++ R + G P
Sbjct: 18 IREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSN 76
Query: 70 YVE 72
YV
Sbjct: 77 YVA 79
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 67.3 bits (165), Expect = 9e-16
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 99 YHALYNYKPQ-NDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ A Y++ + EL L++G+ VF+ GW + G P Y+
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58
Score = 56.6 bits (137), Expect = 1e-11
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 21 QARAKFNFVAQTHL-ELSLVKGELVTLIRRVDNNWFEGRI--GTRRGIFPVTYVEQQSRA 77
+ A ++F EL L KG++V + R + W ++ G++ G P Y+
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT 63
Query: 78 TPSGAPV 84
+ PV
Sbjct: 64 RNT-VPV 69
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 67.2 bits (165), Expect = 1e-15
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y Q DEL +EG+T+ V +K GW+ G +G G P NYV+
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE--LNGKRGWVPANYVQ 56
Score = 64.5 bits (158), Expect = 1e-14
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
Q +A +++ AQT EL+ +G+ + + ++ W+EG + +RG P YV+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 67.3 bits (165), Expect = 1e-15
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 96 PVPYH--ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCF---GTFPGNYV 150
VP+ A + YK +D+L + + + V D WY G Q S G FP ++V
Sbjct: 5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
Query: 151 E 151
Sbjct: 65 A 65
Score = 56.5 bits (137), Expect = 1e-11
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI-----GTRRGIFPVTYVE 72
+ A+F + + +L+ K + + + D W+ G GIFP ++V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 67.2 bits (165), Expect = 1e-15
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL+++ PQ EL + G+ + ++ K D W+ G G FP NYV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN--NRRGIFPSNYVC 55
Score = 67.2 bits (165), Expect = 1e-15
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A F+F Q EL+ +G+++TLI + D NW+EG++ RRGIFP YV
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 68.8 bits (168), Expect = 1e-15
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
LY +K + DDEL++ GE + + D W++ R G G P +YV
Sbjct: 8 TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59
Score = 66.5 bits (162), Expect = 1e-14
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR---GIFPVTYVEQQSRAT 78
A + F A+ EL + GE +++ D WF + R G+ PV+YV
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMD 65
Query: 79 PSGAPVDQTLHIDTHSDPVPYHAL 102
P+ T + + +
Sbjct: 66 PAKYASVDTYDREQVMKIIDEFKI 89
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 67.7 bits (166), Expect = 1e-15
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+A+A +F EL K +++T+I + D + + G + RG FP +VE +
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKE 68
Query: 81 GAP 83
+
Sbjct: 69 YSI 71
Score = 67.3 bits (165), Expect = 1e-15
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL +++ +DDEL R+ + + ++ + D+ +VG G G FP +VE
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN--GLRGWFPAKFVE 60
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 67.4 bits (165), Expect = 1e-15
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ + EL LR E ++++ + W+ ++G G P +Y+ S
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD-KNGHEGYAPSSYLVEKS 77
Score = 59.7 bits (145), Expect = 1e-12
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVT 69
R + ++ E A +++ EL+L E L+ + +W+ + G P +
Sbjct: 12 RRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSS 71
Query: 70 YVEQQS 75
Y+ ++S
Sbjct: 72 YLVEKS 77
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 67.3 bits (165), Expect = 1e-15
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
S + LY ++ +N EL + +GE + V++ W V + +G G P N +E
Sbjct: 5 SSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNE--AGRSGYIPSNILEPL 62
Query: 154 S 154
S
Sbjct: 63 S 63
Score = 55.3 bits (134), Expect = 4e-11
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQS 75
+ + + F A+ EL++V+GE + ++ W R G P +E S
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 67.3 bits (165), Expect = 1e-15
Identities = 12/55 (21%), Positives = 32/55 (58%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+ A +++ ++ E+++ KG+++TL+ + +W++ + R+G P YV+
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
Score = 62.7 bits (153), Expect = 7e-14
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ G P YV++
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 59
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 66.8 bits (164), Expect = 1e-15
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ G G P YVE+
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 56
Score = 61.8 bits (151), Expect = 1e-13
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 66.8 bits (164), Expect = 2e-15
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+A F+F Q EL +G+ + ++ D NW++G + G+FP YV
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55
Score = 64.9 bits (159), Expect = 6e-15
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL+++ PQ D EL R G+ + VM+ D W+ G+ G G FP NYV
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH--GQTGMFPRNYVT 55
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 66.5 bits (163), Expect = 2e-15
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY Y + D+L ++GE + V+E+ W+ S + G P NYV + +
Sbjct: 12 ALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 48.8 bits (117), Expect = 1e-08
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPVTYVEQQS 75
A + + +LS KGE + ++ W++ + + + G P YV + +
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKLN 64
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 66.7 bits (163), Expect = 2e-15
Identities = 14/71 (19%), Positives = 25/71 (35%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTY 70
+ + F L L KG+++ +I + + G + + G F Y
Sbjct: 3 SGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIY 62
Query: 71 VEQQSRATPSG 81
V+ S SG
Sbjct: 63 VDVLSSGPSSG 73
Score = 64.7 bits (158), Expect = 1e-14
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 100 HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
H + P + D L+L++G+ + ++ K G ++G GTF YV+
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NKVGTFKFIYVD 64
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 66.4 bits (163), Expect = 2e-15
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
V Y Y+Y +DDEL +R GE + ++K ++GW G G G FP N+V+
Sbjct: 2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--GRRGMFPDNFVK 55
Score = 56.0 bits (136), Expect = 2e-11
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
++++ A EL++ GE++ ++++ W EG + RRG+FP +V+
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 67.1 bits (164), Expect = 2e-15
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYV 71
+ +A K A L+L G++V + R N +EG + R+G+FP T+V
Sbjct: 11 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 70
Query: 72 EQQSRATPS 80
+ P
Sbjct: 71 KIFDPQNPD 79
Score = 62.1 bits (151), Expect = 2e-13
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ L L G+ V V +G + G G G FP +V+
Sbjct: 23 QKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 71
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 66.5 bits (163), Expect = 2e-15
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTY 70
+ + +A AK++F A ELS +G+++ ++ D NW++ + + G P Y
Sbjct: 2 SRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNY 61
Query: 71 VE 72
+E
Sbjct: 62 IE 63
Score = 60.8 bits (148), Expect = 4e-13
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
A Y++K DDEL + G+ + V+ + CD WY G G P NY+E
Sbjct: 14 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--GKDGFIPKNYIE 63
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 66.1 bits (162), Expect = 2e-15
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++ D+EL + GE + V++ D W+ G + G FP N+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--RGTGLFPSNFVT 58
Score = 64.2 bits (157), Expect = 1e-14
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQ 74
+ RA ++F A EL+ GEL+T++ D NW++G G+FP +V
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 66.6 bits (163), Expect = 2e-15
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYV 71
ARA ++ L + +++T+ + N WF G++ + G FPV +V
Sbjct: 4 LGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
Query: 72 EQQSRATPSGAPV 84
E P PV
Sbjct: 64 EILLSDVPPPQPV 76
Score = 62.0 bits (151), Expect = 2e-13
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
AL +Y + L + + + + K + W++G G G+FP ++VE
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN--GKEGSFPVDHVE 64
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 66.5 bits (163), Expect = 2e-15
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
AL+++ ++++L ++G+ + + +K ++ W+ G G P YVE+
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE-GKRGMIPVPYVEK 58
Score = 60.7 bits (148), Expect = 3e-13
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQ 73
S RA F+F +L KG+++ + + + W+ +RG+ PV YVE+
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 66.1 bits (162), Expect = 3e-15
Identities = 11/55 (20%), Positives = 31/55 (56%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
+ +++ ++ EL++ KG+++TL+ + +W++ + R+G P Y++
Sbjct: 5 GKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
Score = 64.9 bits (159), Expect = 7e-15
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
LY+Y+ ++ EL +++G+ + ++ + W+ G G P Y++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN--GRQGFVPAAYLK 59
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 66.2 bits (162), Expect = 3e-15
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL++YK Q +DEL + + +EK + GW+ G FP NYVE
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY-GGKKQLWFPSNYVE 60
Score = 58.5 bits (142), Expect = 3e-12
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI-FPVTYVE 72
+A F++ AQ EL+ +K ++ + + + W+ G G ++ + FP YVE
Sbjct: 8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 66.3 bits (162), Expect = 3e-15
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
D L +Y + R GE + V+ W S +G PG V
Sbjct: 13 EGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAI-SLSTGRESYIPGICVA 71
Query: 152 RAS 154
R S
Sbjct: 72 RVS 74
Score = 47.1 bits (112), Expect = 7e-08
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTY 70
P+ L ++ + +GE + +I + W++ + R P
Sbjct: 11 NPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGIC 69
Query: 71 VEQQS 75
V + S
Sbjct: 70 VARVS 74
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 66.1 bits (162), Expect = 3e-15
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A+Y+++ +L L G+ ++EK D W+ + G G P NYV
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD-KYGSEGYIPSNYVTGKK 59
Score = 56.1 bits (136), Expect = 2e-11
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
A ++F A +L L +G+ ++ + D +W+ R G P YV +
Sbjct: 5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 67.0 bits (163), Expect = 5e-15
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQR-SGCFGTFPGNYVE 151
A+YN++ +L L+ G+ V + E C D WY G + G FP +++
Sbjct: 64 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH 114
Score = 56.2 bits (135), Expect = 6e-11
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEG---RIGTR 62
+ E A +NF +LSL G++V I+ +W+ G +
Sbjct: 46 SGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKML 104
Query: 63 RGIFPVTYVE 72
+GIFP +++
Sbjct: 105 QGIFPKSFIH 114
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 65.3 bits (160), Expect = 5e-15
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y++ ++ DEL ++ G+ V+++ +K W++ SG G P ++E
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
Score = 53.3 bits (129), Expect = 2e-10
Identities = 10/55 (18%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGT--RRGIFPVTYVE 72
+ +++F+A++ EL++ G+ V ++ + +W+ ++ + G+ P ++E
Sbjct: 4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 65.3 bits (160), Expect = 5e-15
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
+ V ALY+Y Q DEL + G+ + + + D GW G G G +P NYVE
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDS-GQLGLYPANYVE 58
Score = 53.4 bits (129), Expect = 2e-10
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 18 SEG-QARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGT-RRGIFPVTYVE 72
++G + RA +++ Q ELS G+ +T + D W GR+ + + G++P YVE
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 65.4 bits (160), Expect = 5e-15
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y DEL + G+ + V K ++ W+ GS + G G FP N+V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK-GQEGYFPANHVA 60
Score = 58.5 bits (142), Expect = 2e-12
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
A +++ A EL++ +G+++ + + + +W+ G IG + G FP +V ++
Sbjct: 8 TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 66.0 bits (161), Expect = 6e-15
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
S Y Y+ D E+ G V V+EK + GW+ + G P +Y+
Sbjct: 6 SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYV--RFGELEGWAPSHYLV 61
Score = 61.0 bits (148), Expect = 4e-13
Identities = 11/67 (16%), Positives = 22/67 (32%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ E+S G V ++ + ++ W+ R G G P Y+ P
Sbjct: 10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPD 69
Query: 81 GAPVDQT 87
+ +
Sbjct: 70 PSGKESG 76
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 65.9 bits (161), Expect = 6e-15
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A A ++ V + EL+ G+++ ++ + +W+ G+I G FP ++V
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDE 71
Query: 81 GAP 83
Sbjct: 72 VEE 74
Score = 62.8 bits (153), Expect = 1e-13
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 92 THSDPVPY-HALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
+ D + A++++ + EL + G+ + V++ + W+ G G FP ++V
Sbjct: 5 SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFV 62
Query: 151 E 151
Sbjct: 63 R 63
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 64.9 bits (159), Expect = 6e-15
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
ARA ++F A EL GE+V ++ + +W+ GR+ + G+FP YV
Sbjct: 3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54
Score = 64.9 bits (159), Expect = 8e-15
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+++ +DEL R GE V V++ + W+ G G FP NYV
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVA 54
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 65.4 bits (160), Expect = 7e-15
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ-RSGCFGTFPGNYVE 151
+Y+ + NDDEL EGE + V + D W++G + + G FP ++V
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVH 66
Score = 65.4 bits (160), Expect = 8e-15
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPV 68
+ + + ++ A EL+ ++GE++ + D W+ G I R+G+FPV
Sbjct: 3 SGSSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62
Query: 69 TYVEQQSRATPS 80
++V S + PS
Sbjct: 63 SFVHILSDSGPS 74
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 65.5 bits (160), Expect = 8e-15
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERAS 154
+ EL R+G+ V ++E C++ WY SG G + S
Sbjct: 22 TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS 76
Score = 60.9 bits (148), Expect = 5e-13
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 11 RTAPKKLSEG-QARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGT--RRGIF 66
R ++ + G Q K EL+ KG++VT++ + +W+ + T + G+
Sbjct: 8 RMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLL 67
Query: 67 PVTYVEQQSRATPSG 81
+ ++S SG
Sbjct: 68 AAGALRERS-GPSSG 81
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 64.5 bits (158), Expect = 1e-14
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL++YK Q +DEL + + +EK D GW+ G FP NYVE
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVE 57
Score = 57.2 bits (139), Expect = 7e-12
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGI-FPVTYVE 72
+A F++ AQ EL+ K ++ + + D W+ G G ++ + FP YVE
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 64.8 bits (158), Expect = 1e-14
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-------GCFGT 144
+ S + AL++Y+ + ++L R G+ + V++ +GW++ G
Sbjct: 3 SGSSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 145 FPGNYVERAS 154
P NYV S
Sbjct: 63 IPSNYVAEDS 72
Score = 52.4 bits (126), Expect = 7e-10
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT---------RRGIFPV 68
S A F++ A+T +LS G+ + ++ W+ R +G P
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 69 TYVEQQS 75
YV + S
Sbjct: 66 NYVAEDS 72
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 64.6 bits (158), Expect = 1e-14
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G G G FP N+V+
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 62
Score = 61.9 bits (151), Expect = 1e-13
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQSRAT 78
+ F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+ S
Sbjct: 9 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS-GP 67
Query: 79 PSG 81
SG
Sbjct: 68 SSG 70
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 63.7 bits (156), Expect = 2e-14
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
A+Y Y+ Q DDE+ + G+ + V+ D GW G G G FP +Y +
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--GLKGLFPTSYCK 54
Score = 57.9 bits (141), Expect = 3e-12
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGTRRGIFPVTYVE 72
G A + + AQ E+S+ G+++T+IR D + W G +G+FP +Y +
Sbjct: 1 GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 64.3 bits (157), Expect = 2e-14
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+Y+ Q DDEL EG + ++ K DDG++ G G G FP VE
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN--GRIGVFPSVLVE 64
Score = 62.3 bits (152), Expect = 9e-14
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
+A +++ QT ELS +G ++ ++ + D+ ++EG R G+FP VE+ S
Sbjct: 10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69
Query: 78 TPSG 81
SG
Sbjct: 70 PSSG 73
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 63.9 bits (156), Expect = 2e-14
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 90 IDTHSDPVPY-HALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFP 146
+D+ + Y ++ Y+ QNDDEL ++EG+ V ++ K D GW+ G G G FP
Sbjct: 2 MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFP 59
Query: 147 GNYVE 151
N+V+
Sbjct: 60 DNFVK 64
Score = 63.9 bits (156), Expect = 2e-14
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVT 69
+ S+ + F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP
Sbjct: 2 MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDN 61
Query: 70 YVE 72
+V+
Sbjct: 62 FVK 64
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 63.8 bits (156), Expect = 2e-14
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ Y+ QNDDEL ++EG+ V ++ K D GW+ G G G FP N+V+
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--GRRGVFPDNFVK 57
Score = 61.9 bits (151), Expect = 1e-13
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVE 72
+ F + AQ EL++ +G++VTLI + +D W+EG + RRG+FP +V+
Sbjct: 4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 63.8 bits (156), Expect = 2e-14
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
L+ Y N+DEL REGE + ++ K + GW+ G G G FP N+ + S
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN--GKEGVFPDNFAVQIS 64
Score = 61.5 bits (150), Expect = 2e-13
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQ 73
R F + EL+ +GE++ LI + + W++G + + G+FP + Q
Sbjct: 8 YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 63.7 bits (156), Expect = 2e-14
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
+ LY Y ++DDE+ + G+ + ++ + GW ++ +G G P Y+
Sbjct: 2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 49.1 bits (118), Expect = 6e-09
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNN-WFEGRIGT--RRGIFPVTYVE 72
+ + + +V + E+++ G+ ++L+ R + W + T G+ P TY+
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 64.3 bits (157), Expect = 2e-14
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y + D+L ++G+ + V+E+ + W+ S + G P NYV R
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 48.9 bits (117), Expect = 2e-08
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 17 LSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRR-GIFPVTYVE 72
+ + A +++V+ + +LS KG+ + ++ W + TR+ G P YV
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 57
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 63.8 bits (156), Expect = 3e-14
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGSSQRSGCFGTFPGNYVE 151
ALY+ P DEL G+ + ++E+ +GW+ G G P N ++
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--GRQGLAPANRLQ 63
Score = 58.1 bits (141), Expect = 4e-12
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR---VDNNWFEGRIGTRRGIFPVTYVE 72
ARA ++ EL+ +G+++T++ + W++ + R+G+ P ++
Sbjct: 9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 64.4 bits (157), Expect = 3e-14
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGTRRGIFPVTYVE------ 72
RA + F A+ H E+S G+++ + + + W G G FP YVE
Sbjct: 7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66
Query: 73 QQSRATPSGAPVDQTLHIDTHSDPVP 98
+ +P A + T+ + S P
Sbjct: 67 NEKAVSPKKALLPPTVSLSATSGPSS 92
Score = 63.7 bits (155), Expect = 5e-14
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEK--CDDGWYVGSSQRSGCFGTFPGNYVE 151
S Y ALY ++ +N DE+ G+ + V EK + GW GS Q G FG FP NYVE
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ--GNFGWFPCNYVE 60
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 63.9 bits (156), Expect = 3e-14
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 73 QQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
S + P+ + + ALY+Y+ + EL LR E +++ + W+
Sbjct: 3 SGSSGEDNRRPLWEP-------EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWW 55
Query: 133 VGSSQRSGCFGTFPGNYVERAS 154
R+G G P +Y+ S
Sbjct: 56 RVQD-RNGHEGYVPSSYLVEKS 76
Score = 56.2 bits (136), Expect = 3e-11
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQS 75
E A +++ EL+L + E L+ + +W+ + G P +Y+ ++S
Sbjct: 19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 76
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 67.0 bits (163), Expect = 4e-14
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 7/140 (5%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIR-RVDNN--WFEGRIGTRRGIFPVTYVEQQ 74
+G + + A LS+ G V + D +F + V Y
Sbjct: 79 HDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRST 138
Query: 75 SRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG 134
S + + P AL+++ PQ D EL R G+ + VM+ D W+ G
Sbjct: 139 SVSRNQ--QIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKG 196
Query: 135 SSQRSGCFGTFPGNYVERAS 154
+ G G FP NYV +
Sbjct: 197 AC--HGQTGMFPRNYVTPVN 214
Score = 59.3 bits (143), Expect = 3e-11
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 5/138 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
+A AK++F A ELS +G+++ ++ D NW++ + + G P Y+E +
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWF 61
Query: 80 SGAPVDQTLHIDTHSDPVPYHAL--YNYKPQNDDELELREGETV--FVMEKCDDGWYVGS 135
G L + D L ++ G V F + + G Y
Sbjct: 62 FGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLW 121
Query: 136 SQRSGCFGTFPGNYVERA 153
+ + +
Sbjct: 122 VVKFNSLNELVDYHRSTS 139
Score = 53.1 bits (127), Expect = 4e-09
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 97 VPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
+ A Y++K DDEL + G+ + V+ + D + ++ +G G P NY+E
Sbjct: 1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYIEM 55
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 63.1 bits (154), Expect = 4e-14
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 20 GQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATP 79
+A K A L+L G++V + R N +EG + R+G+FP T+V+ P
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP 63
Query: 80 S 80
Sbjct: 64 D 64
Score = 60.4 bits (147), Expect = 5e-13
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 96 PVPYHALYNYKP--QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
PV A+ P + L L G+ V V +G + G G G FP +V+
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRKGLFPFTHVK 56
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 63.6 bits (155), Expect = 4e-14
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPV 68
+ A ++F Q +L+ G+ +T+I + D +W+EG++ + GIFP
Sbjct: 9 ERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPA 68
Query: 69 TYVEQQSRATP 79
YV S +
Sbjct: 69 NYVTMNSGPSS 79
Score = 62.4 bits (152), Expect = 1e-13
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD--GWYVGSSQRSGCFGTFPGNYVE 151
+ P+ ALY+++ Q +L + G+ + V+ K D W+ G + G G FP NYV
Sbjct: 15 NQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR--GQTGIFPANYVT 72
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 63.1 bits (154), Expect = 5e-14
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
AL ++ + D+ L + + + V+E+ + W+ G G G FP +YV+
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRGWFPKSYVK 62
Score = 60.8 bits (148), Expect = 4e-13
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE--QQSRAT 78
+A+A ++ A+ L+ K +++T++ + NW+ G + RG FP +YV+ S +
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSESG 70
Query: 79 PS 80
PS
Sbjct: 71 PS 72
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 62.6 bits (153), Expect = 5e-14
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD--NNWFEGRIGTRRGIFPVTYVE 72
S +A A ++F + +L KG+++T++++ D N+W+ GR+ R GIFP YVE
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
Score = 60.3 bits (147), Expect = 4e-13
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD--DGWYVGSSQRSGCFGTFPGNYVE 151
ALY++ + +L R+G+ + +++K D + W+ G G G FP NYVE
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN--GREGIFPANYVE 58
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 62.7 bits (153), Expect = 6e-14
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 91 DTHSDPVPYHALYNYKP--QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGN 148
+ + P+ + P + L L GE V V + G + G G G FP
Sbjct: 1 NLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN--GKRGHFPFT 58
Query: 149 YVE 151
+V
Sbjct: 59 HVR 61
Score = 60.8 bits (148), Expect = 4e-13
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 22 ARAKFNFV--AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
AR V A L+L GELV + + + +EG +RG FP T+V
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 63.2 bits (154), Expect = 7e-14
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRR--VDNNWFEGRIGTRRGIFPVTYVEQQSR 76
G A +++ LS +G+L+ L+ ++ W G G R G+FP V+ +
Sbjct: 8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67
Query: 77 ATPSGAPVDQT 87
S + ++
Sbjct: 68 PDFSFSKEQRS 78
Score = 59.0 bits (143), Expect = 3e-12
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 101 ALYNYKPQNDDELELREGE--TVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
AL +Y N L G+ + + + GW GS+ G G FP + V+ A+
Sbjct: 13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--GRSGLFPADIVQPAA 66
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 62.7 bits (153), Expect = 8e-14
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
+ A + + + +L+ +GE + + ++ D W+ G IG R GIFP YV+ + S
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68
Query: 81 G 81
G
Sbjct: 69 G 69
Score = 61.5 bits (150), Expect = 2e-13
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y ALY Y +L EGE + V +K D W+ GS G FP NYV+
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--DRSGIFPSNYVK 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 62.3 bits (152), Expect = 9e-14
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y++ ++ DEL ++ G+ V+++ +K W++ SG G P ++E
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
Score = 53.4 bits (129), Expect = 2e-10
Identities = 11/58 (18%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLI-RRVDNNWFEGRIGT--RRGIFPVTYVE 72
S+ + +++F+A++ EL++ G+ V ++ + +W+ ++ + G+ P ++E
Sbjct: 5 SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 62.3 bits (152), Expect = 1e-13
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVE 151
ALY K ++D EL G + + GW G+ G G P NYVE
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPENYVE 64
Score = 59.6 bits (145), Expect = 1e-12
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTY 70
+ +A+A + A+ ELS G + + + W EG + + G+ P Y
Sbjct: 3 SGSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENY 62
Query: 71 VE 72
VE
Sbjct: 63 VE 64
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 62.3 bits (152), Expect = 1e-13
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDD-GWYVGSSQRSGCFGTFPGNYVERA 153
A YN+ + +L +G+ + ++ D WY + G G P NYV++
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKA-KNKVGREGIIPANYVQKR 68
Score = 58.4 bits (142), Expect = 2e-12
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGT-RRGIFPVTYVEQQ 74
+ AK+NF +L KG+++T++ + NW++ + R GI P YV+++
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 62.0 bits (151), Expect = 1e-13
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS------GCFGTFPGNYVER 152
ALY+Y+ ++ E+ +++G+ + ++ + W+ + + G P YV++
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
Query: 153 A 153
Sbjct: 64 L 64
Score = 52.0 bits (125), Expect = 7e-10
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNW--------FEGRIGTRRGIFPVTY 70
+ A +++ ++ E+++ KG+++TL+ + +W G+ R+G P Y
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60
Query: 71 VE 72
V+
Sbjct: 61 VK 62
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 61.6 bits (150), Expect = 2e-13
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
A + A E+++ KG+++TL+ + +W++ + R+G P YV++ T
Sbjct: 2 GAPPLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60
Score = 51.6 bits (124), Expect = 1e-09
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
L Y E+ +++G+ + ++ + W+ + + G P YV++
Sbjct: 5 PLPPYSAGGR-EVTMKKGDILTLLNSTNKDWWKV--EVNDRQGFVPAAYVKK 53
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 61.5 bits (150), Expect = 2e-13
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
S A+Y+++ ++ + + EGE + +ME+ DGW + G G P +Y+
Sbjct: 5 SSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKE-GGEGYVPTSYLR 62
Score = 55.4 bits (134), Expect = 4e-11
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGT-RRGIFPVTY 70
S G A ++F + +S+ +GE ++L+ + W R G P +Y
Sbjct: 1 GSSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSY 60
Query: 71 VEQQSRAT 78
+ S +
Sbjct: 61 LRVTSGPS 68
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 61.2 bits (149), Expect = 3e-13
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
+ P+ +Y+YK DEL + E E + V+E D + W ++ G G P Y++
Sbjct: 11 NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV-GQVGYVPEKYLQ 68
Score = 56.6 bits (137), Expect = 2e-11
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDN-NWFEGRIGT-RRGIFPVT 69
+ + + +++ A EL++ + E++ +I D +W + R + G P
Sbjct: 6 SGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEK 65
Query: 70 YVEQQSRATPSGA 82
Y++ + + PS
Sbjct: 66 YLQFPTSSGPSSG 78
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 60.8 bits (148), Expect = 3e-13
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCD---DGWYVGSSQRSGCFGTFPGNYVE 151
ALY+ ++ DEL R+G+ + V+E+ DGW++ S G G PGN ++
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH--GRQGIVPGNRLK 59
Score = 58.5 bits (142), Expect = 3e-12
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNN---WFEGRIGTRRGIFPVTYVEQQSRAT 78
A+A ++ VA++ ELS KG+++T++ + W+ + R+GI P ++
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMY 65
Query: 79 P 79
Sbjct: 66 D 66
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 66.3 bits (160), Expect = 3e-13
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 72 EQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD-G 130
+T + + T V ALY+Y+ Q DEL + G+ + ME D+ G
Sbjct: 404 NNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQG 463
Query: 131 WYVGSSQRSGCFGTFPGNYVE 151
W G G G +P NYVE
Sbjct: 464 WCKGRLDN-GQVGLYPANYVE 483
Score = 50.9 bits (120), Expect = 5e-08
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD-NNWFEGRIGT-RR 63
+ +E + RA +++ Q H ELS G+ +T + D W +GR+ +
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 64 GIFPVTYVE 72
G++P YVE
Sbjct: 475 GLYPANYVE 483
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 60.7 bits (148), Expect = 4e-13
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERA 153
++ V A ++Y Q D EL++++ E +++++ W V ++ + G P NYVER
Sbjct: 2 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA--ANRTGYVPSNYVERK 59
Query: 154 S 154
Sbjct: 60 L 60
Score = 49.2 bits (118), Expect = 8e-09
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 17 LSEGQ-ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQ 74
++E AK+++ AQ EL + K E + L+ W+ R R G P YVE++
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVERK 59
Query: 75 S 75
Sbjct: 60 L 60
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 61.3 bits (149), Expect = 4e-13
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD----GWYVGSSQRSGCFGTFPGNY 149
D V A Y++ +D+E+ R G+ + + K GW + S G P NY
Sbjct: 15 DDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL-DGQTTGLIPANY 73
Query: 150 VE 151
V+
Sbjct: 74 VK 75
Score = 52.5 bits (126), Expect = 9e-10
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRI-GTRRGIFPVTYVEQQS 75
ARA+++FVA + E+S G+++ L + W + G G+ P YV+
Sbjct: 19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 78
Query: 76 RATPSGAPVDQ 86
+
Sbjct: 79 KRRGRKTIESG 89
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 61.0 bits (148), Expect = 5e-13
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 78 TPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQ 137
+ + ++ V A ++Y Q D EL++++ E +++++ W V ++
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNA- 71
Query: 138 RSGCFGTFPGNYVER 152
+ G P NYVER
Sbjct: 72 -ANRTGYVPSNYVER 85
Score = 49.4 bits (118), Expect = 1e-08
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
E AK+++ AQ EL + K E + L+ W R G P YVE
Sbjct: 25 NLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 84
Query: 73 QQ 74
++
Sbjct: 85 RK 86
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 60.5 bits (147), Expect = 6e-13
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 94 SDPVPYHALYNYKPQN-------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTF 145
S ALY+Y P+ + EL G+ + V + D DG+Y G +G G
Sbjct: 5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE--LNGQKGLV 62
Query: 146 PGNYVERAS 154
P N++E S
Sbjct: 63 PSNFLEEVS 71
Score = 53.9 bits (130), Expect = 2e-10
Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 21 QARAKFNFVAQTHL-------ELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
+ A +++ + EL+ G+++T+ +D + ++ G + ++G+ P ++E
Sbjct: 9 RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
Query: 73 QQS 75
+ S
Sbjct: 69 EVS 71
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 63.9 bits (154), Expect = 6e-13
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 67 PVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVM-- 124
V + A ++Y + DEL+L+ G+ V V+
Sbjct: 113 VVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPF 172
Query: 125 ---EKCDDGWYVGSSQRS--------GCFGTFPGNYVER 152
E+ D+GW +G + C G FP N+ ER
Sbjct: 173 QNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 2 SSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIR-----RVDNNWFE 56
+ R + +A+ ++ A EL L G++V +I D W
Sbjct: 125 TVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLM 184
Query: 57 G----------RIGTRRGIFPVTYVEQ 73
G ++ RG+FP + E+
Sbjct: 185 GVKESDWNQHKKLEKCRGVFPENFTER 211
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 60.1 bits (146), Expect = 7e-13
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 101 ALYNYKPQ-NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
++ + N L +G+ + ++ DGW G + G FP +Y +
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
Score = 50.0 bits (120), Expect = 5e-09
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 21 QARAKFNFVAQTHL-ELSLVKGELVT-LIRRVDNNWFEGRIGT--RRGIFPVTYVE 72
+ + F A + LS +G+++T LI + W G T RG FP +Y +
Sbjct: 9 KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 59.9 bits (146), Expect = 7e-13
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 94 SDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG-WYVGSSQRSGCFGTFPGNYVER 152
+DP + ALY++ D+ L + +GE + V+ +G W + G P Y+
Sbjct: 3 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITP 60
Query: 153 A 153
Sbjct: 61 V 61
Score = 51.8 bits (125), Expect = 7e-10
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRR-VDNNWFEGRIGTRRGIFPVTYVE 72
A ++FVA LS+ KGE + ++ + W E + +G P Y+
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 60.7 bits (147), Expect = 8e-13
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 99 YHALYNYKPQ------NDDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTFPGNYVE 151
A Y+Y P + EL L G+ ++V D DG+Y G G G P N+V+
Sbjct: 20 CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLD-GQRGLVPSNFVD 78
Query: 152 RAS 154
Sbjct: 79 FVQ 81
Score = 46.0 bits (109), Expect = 3e-07
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 13 APKKLSEGQARAKFNFVAQT------HLELSLVKGELVTLIRRVD-NNWFEGRIGT-RRG 64
A++++ EL L G+ + + +D + ++EG + +RG
Sbjct: 11 QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70
Query: 65 IFPVTYVEQQSRATPSGAP 83
+ P +V+ A
Sbjct: 71 LVPSNFVDFVQDNESRLAS 89
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 59.6 bits (145), Expect = 1e-12
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 101 ALYNYKP-QNDDELELREGETVFVM-EKCDDGWYVGSSQRSGCFGTFPGNYVE 151
++ + N L +G+ + ++ + DGW G S G FP +Y +
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63
Score = 52.3 bits (126), Expect = 5e-10
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 21 QARAKFNFVAQT-HLELSLVKGELVT-LIRRVDNNWFEGRI--GTRRGIFPVTYVE 72
+ + F A + LS +G+++T LI + W G RG FP +Y +
Sbjct: 8 KVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 59.2 bits (144), Expect = 1e-12
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 92 THSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
T ++ V A ++Y Q + EL++++ E +++++ W V +S G P NYVE
Sbjct: 3 TMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNS--MNKTGFVPSNYVE 60
Query: 152 RAS 154
R +
Sbjct: 61 RKN 63
Score = 47.7 bits (114), Expect = 4e-08
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 13 APKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVE 72
E AKF++VAQ EL + K E + L+ + W + G P YVE
Sbjct: 1 GSTMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE 60
Query: 73 QQS 75
+++
Sbjct: 61 RKN 63
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 59.3 bits (144), Expect = 2e-12
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 94 SDPVPYHALYNYKPQN-------DDELELREGETVFVMEKCD-DGWYVGSSQRSGCFGTF 145
S A +Y P + L LR G+ V V D G+Y G G G
Sbjct: 5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--GHRGLV 62
Query: 146 PGNYVERASL 155
P + ++ SL
Sbjct: 63 PAHLLDHMSL 72
Score = 47.8 bits (114), Expect = 3e-08
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 21 QARAKFNFVAQTHL-------ELSLVKGELVTLIRRVD-NNWFEGRIGTRRGIFPVTYVE 72
A ++ L+L G++V + +D ++ G +G RG+ P ++
Sbjct: 9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68
Query: 73 QQS 75
S
Sbjct: 69 HMS 71
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 58.8 bits (143), Expect = 2e-12
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVER 152
LY + ++EL +GET+ V+EK D W+ + R G G P NYV
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVVV 63
Score = 52.3 bits (126), Expect = 7e-10
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGT-RRGIFPVTYVEQQSRAT 78
+ + F + T EL+ KGE + +I + D W++ + + G+ P YV S
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68
Query: 79 PS 80
Sbjct: 69 AL 70
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 59.4 bits (144), Expect = 2e-12
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC--DDGWYVGSSQRSGCFGTFPGNYVERAS 154
LY + ++EL +GET+ V+EK D W+ + R G G P NYV S
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNAR-GQVGLVPKNYVVVLS 76
Score = 54.8 bits (132), Expect = 1e-10
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRV--DNNWFEGRIGT-RRGIFPVTYVEQQSRA 77
+ + F + T EL+ KGE + +I + D W++ + + G+ P YV S
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78
Query: 78 TPSGAP 83
Sbjct: 79 PALHPA 84
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 58.5 bits (142), Expect = 2e-12
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 35 ELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
E+++ KG+++TL+ + +W++ + R+G P YV++ T
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
Score = 45.8 bits (109), Expect = 1e-07
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 110 DDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
E+ +++G+ + ++ + W+ G P YV++
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 43
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 58.9 bits (143), Expect = 2e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCD----DGWYVGSSQRSGCFGTFPGNYVERAS 154
Y A+Y +K +N +EL + + + ++E D W++ G G P NY+ +
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--GKKGYVPSNYIRKTE 73
Score = 57.0 bits (138), Expect = 1e-11
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 14 PKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVT 69
+ A + F A+ ELS+ + + ++ D W+ + ++G P
Sbjct: 8 SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSN 67
Query: 70 YVEQQSRATPSG 81
Y+ + SG
Sbjct: 68 YIRKTESGPSSG 79
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 58.9 bits (143), Expect = 2e-12
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 101 ALYNYKPQ-NDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
+Y++ + ++EL + EGE + V GW G + + G G P +YVE
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNK-GEQGLVPTDYVE 65
Score = 56.6 bits (137), Expect = 2e-11
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 12 TAPKKLSEGQARAKFNFVAQTH-LELSLVKGELVTLIRR-VDNNWFEGRIGT-RRGIFPV 68
++ +AR ++F A+ EL++ +GE++T+ V W EG+ +G+ P
Sbjct: 2 SSGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPT 61
Query: 69 TYVEQQSRATPS 80
YVE
Sbjct: 62 DYVEILPNDGKD 73
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 58.3 bits (141), Expect = 6e-12
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 81 GAPVDQTLHIDTHSDPVP-YHALYNYKPQN--------DDELELREGETVFVMEKCD-DG 130
G+ P + AL++Y P ++EL +EG+ + V D DG
Sbjct: 1 GSSGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG 60
Query: 131 WYVGSSQRSGCFGTFPGNYVER 152
+Y G + G P N V
Sbjct: 61 FYRGETC--ARLGLIPCNMVSE 80
Score = 49.1 bits (117), Expect = 2e-08
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHL--------ELSLVKGELVTLIRRVD-NNWFEGRIGT 61
++L A F++ T EL +G+++ + D + ++ G
Sbjct: 9 DPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCA 68
Query: 62 RRGIFPVTYVEQQSRATPSGAPVD 85
R G+ P V +
Sbjct: 69 RLGLIPCNMVSEIQADDEEMMDQS 92
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 57.8 bits (140), Expect = 6e-12
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
ALY++ P+N + E+ L++G+ + ++ K D W+ + ++G G P NY+E
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 67
Score = 51.2 bits (123), Expect = 2e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 13 APKKLSEGQARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGI 65
ARA ++FV + +E++L KG+L+ ++ + D ++W++ R G
Sbjct: 1 GSHHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGY 60
Query: 66 FPVTYVE 72
P Y+E
Sbjct: 61 IPYNYIE 67
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 60.1 bits (145), Expect = 8e-12
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRS-GCFGTFPGNYVE 151
A+YN++ +L L+ G+ V + E C D WY G + G FP +++
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH 72
Score = 47.4 bits (112), Expect = 4e-07
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 19 EGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI---GTRRGIFPVTYVE 72
E A +NF +LSL G++V I+ +W+ G + +GIFP +++
Sbjct: 17 ERHGVAIYNFQGSGAPQLSLQIGDVVR-IQETCGDWYRGYLIKHKMLQGIFPKSFIH 72
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 56.9 bits (138), Expect = 9e-12
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
Y+++ +N EL +++ + + V++ W V +G G P N +
Sbjct: 13 CNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRD--PAGQEGYVPYNILT 61
Score = 48.1 bits (115), Expect = 2e-08
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
++F A+ ELS+ + +++ ++ W++ R + G P +
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKVRDPAGQEGYVPYNILT 61
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 57.9 bits (140), Expect = 9e-12
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
ALY++ P+N + E+ L++G+ + ++ K D W+ + ++G G P NY+E
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 74
Score = 53.7 bits (129), Expect = 3e-10
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 21 QARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGIFPVTYVEQ 73
ARA ++FV + +E++L KG+L+ ++ + D ++W++ R G P Y+E
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
Query: 74 QSRATPSGAPVDQT 87
R D+T
Sbjct: 76 IKRRKKIEHVDDET 89
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 57.2 bits (138), Expect = 9e-12
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 30 AQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLH 89
A E+++ KG+++TL+ + +W++ + R+G P YV++ T + +
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDY 61
Query: 90 IDTHSDP 96
++ +
Sbjct: 62 QESGDNA 68
Score = 49.5 bits (118), Expect = 1e-08
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 108 QNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVER 152
E+ +++G+ + ++ + W+ G P YV++
Sbjct: 3 MGPREVTMKKGDILTLLNSTNKDWWKVEVN--DRQGFVPAAYVKK 45
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 57.0 bits (138), Expect = 1e-11
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 101 ALYNYKPQNDD-ELELREGETVFVMEKCD-----DGWYVGSSQRSGCFGTFPGNYVE 151
ALY++ P+N + E+ L++G+ + ++ K D W+ + ++G G P NY+E
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNIGYIPYNYIE 74
Score = 51.3 bits (123), Expect = 2e-09
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 21 QARAKFNFVAQTH-LELSLVKGELVTLIRRVD-----NNWFEGRIGT-RRGIFPVTYVE 72
ARA ++FV + +E++L KG+L+ ++ + D ++W++ R G P Y+E
Sbjct: 16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 56.8 bits (137), Expect = 2e-11
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 101 ALYNYKPQND-DELELREGETVFVMEKCDDGWY----VGSSQRSGCFGTFPGNYVE 151
AL ++ +D L +R G+ + V+E+ DG + S + + G FP VE
Sbjct: 23 ALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78
Score = 50.6 bits (121), Expect = 4e-09
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 21 QARAKFNFVAQT-HLELSLVKGELVTLIRRVDNNWFEGRI------GTRRGIFPVTYVE 72
+ RA +F L++ G+++T++ + + ++G I R G FP VE
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 55.7 bits (135), Expect = 3e-11
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ Y++ +N EL + + + + +++ W V + SG G P N ++
Sbjct: 6 SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRN--ASGDSGFVPNNILD 54
Score = 48.8 bits (117), Expect = 1e-08
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 22 ARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE 72
A++K++FVA+ ELS++K +++ ++ W++ R + G P ++
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGFVPNNILD 54
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 55.2 bits (133), Expect = 5e-11
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVG--SSQRSGCFGTFPGNYVER 152
Y ++ +Y+ ++ +EG ++ V+E+ +GW+ G P NY+E+
Sbjct: 13 YVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67
Score = 47.5 bits (113), Expect = 4e-08
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 12 TAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI----GTRRGIFP 67
+ + + ++ +G + ++ R N W+ +I +G P
Sbjct: 3 SGSSGNLKDVYVSIADYEGDEE-TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVP 61
Query: 68 VTYVEQQSRATPSG 81
Y+E+++ SG
Sbjct: 62 SNYLEKKNSGPSSG 75
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 53.9 bits (130), Expect = 2e-10
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 101 ALYNYKPQNDD--ELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
ALY Y +DD E+ + E + V + + W+ G G P NYV+
Sbjct: 10 ALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRAN-GETGIIPSNYVQ 60
Score = 47.7 bits (114), Expect = 3e-08
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 21 QARAKFNFVAQ--THLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVEQQSRA 77
+A+A + + A E+S + E++ + ++ W++ R GI P YV+
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRANGETGIIPSNYVQLIDGP 65
Query: 78 TPS 80
Sbjct: 66 EEM 68
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 53.2 bits (128), Expect = 2e-10
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 62 RRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETV 121
R+G P YV+ +D+ + ALY+Y+ ++ E+ +++G+ +
Sbjct: 3 RQGFVPAAYVK----------------KLDSGTGKELVLALYDYQEKSPREVTMKKGDIL 46
Query: 122 FVMEKCDDGWYVGS 135
++ + W+
Sbjct: 47 TLLNSTNKDWWKVE 60
Score = 46.6 bits (111), Expect = 7e-08
Identities = 8/58 (13%), Positives = 29/58 (50%)
Query: 2 SSIIPYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRI 59
+P ++ + A +++ ++ E+++ KG+++TL+ + +W++ +
Sbjct: 4 QGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.5 bits (130), Expect = 1e-09
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 85 DQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGT 144
+ I + AL+++ ++++L ++G+ + + +K ++ W+ G G
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGM 183
Query: 145 FPGNYVE 151
P YVE
Sbjct: 184 IPVPYVE 190
Score = 53.4 bits (127), Expect = 4e-09
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT-RRGIFPVTYVE------Q 73
RA F+F +L KG+++ + + + W+ +RG+ PV YVE
Sbjct: 138 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA 197
Query: 74 QSRATPSGAPVDQTLHIDTHSDPVPY 99
A G +P PY
Sbjct: 198 SVSALIGGNQEGSHPQPLGGPEPGPY 223
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 54.8 bits (132), Expect = 2e-09
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYV 150
ALY+Y+ + + +L ++GE + ++ + W++ S +G G P NYV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
Score = 41.7 bits (98), Expect = 7e-05
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGT--RRGIFPVTYVEQQSR 76
A +++ ++T +LS KGE + ++ + +W+ + + G P YV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 54.8 bits (132), Expect = 2e-09
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 67 PVTYVEQQSRATPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEK 126
+ Q + L + +DP + ALY++ D+ L + +GE + V+
Sbjct: 14 ASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGY 73
Query: 127 CDDGWYVGSSQRSGCFGTFPGNYVERAS 154
+G + +Q G P NY+ +
Sbjct: 74 NHNGEWC-EAQTKNGQGWVPSNYITPVN 100
Score = 42.1 bits (99), Expect = 5e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 6 PYDKIRTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGTRRG 64
+ + P + A ++FVA LS+ KGE + ++ + W E + +G
Sbjct: 30 SKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQG 89
Query: 65 IFPVTYV 71
P Y+
Sbjct: 90 WVPSNYI 96
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 54.2 bits (130), Expect = 4e-09
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRA 77
S A A ++ V EL G+++ ++ + W+ GR+ G FP ++V +
Sbjct: 29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQ 88
Query: 78 TPSGAPVDQTLHIDTHSDPVPYHALYNYKPQNDDELELREGETVFV--MEKCDDGWY 132
D + + + E+ E ++ + +G+
Sbjct: 89 DEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYV 145
Score = 53.0 bits (127), Expect = 1e-08
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 75 SRATPSGAPVDQTLHIDTHSDPVPY--HALYNYKPQNDDELELREGETVFVMEKCDDGWY 132
+ G +Q + SD AL+++ +D EL + G+ + VM+ + W+
Sbjct: 7 HHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 66
Query: 133 VGSSQRSGCFGTFPGNYVERASLALRWVENASKL 166
G G FP ++V ++ + L
Sbjct: 67 WGRVA--DGEGWFPASFVRLRVNQDEPADDDAPL 98
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 53.1 bits (128), Expect = 7e-09
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
A YN+ + +L +G+ + ++ D + + + G G P NYV++
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
Score = 39.3 bits (92), Expect = 4e-04
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 18 SEGQARAKFNFVAQTHLELSLVKGELVTLIRRV-DNNWFEGRIGT-RRGIFPVTYVEQQS 75
S + AK+NF +L KG+++T++ D NW++ + R GI P YV+++
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 52.8 bits (127), Expect = 1e-08
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
ALY+Y+ + ++L ++G+ + V+E+ W+ S + G P NYV R
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 65
Score = 37.8 bits (88), Expect = 0.001
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNNWF-EGRIGTRRGIFPVTYV 71
A +++ A H +LS KG+ + ++ W + G P YV
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 61
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 52.2 bits (125), Expect = 2e-08
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 57 GRIGTRRGIFPVTYVEQQSRATPSGAPVDQTLHIDTHSDPVP-YHALYNYKPQNDDELEL 115
G G P + S V + V + ALY+Y+ + + +L
Sbjct: 45 GHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSF 104
Query: 116 REGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERAS 154
++GE + ++ + W++ S +G G P NYV +
Sbjct: 105 KKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
Score = 41.0 bits (96), Expect = 1e-04
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPV 68
R P A +++ ++T +LS KGE + ++ + +W+ + G P
Sbjct: 77 RAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPS 136
Query: 69 TYVEQQS 75
YV
Sbjct: 137 NYVAPSD 143
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 51.3 bits (123), Expect = 2e-08
Identities = 18/75 (24%), Positives = 38/75 (50%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPS 80
Q +++ AQ EL+ KG+++ ++ + D +W++G + + G+FP YV+ + PS
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63
Query: 81 GAPVDQTLHIDTHSD 95
+D +
Sbjct: 64 QQWCSDLHLLDMLTP 78
Score = 50.9 bits (122), Expect = 3e-08
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNYVERASLALRWV 160
+Y+Y QNDDEL +G+ + V+ K D W+ G SG G FP NYV+ +
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE--VSGQVGLFPSNYVKLTTDMDPSQ 64
Query: 161 ENAS 164
+ S
Sbjct: 65 QWCS 68
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 48.5 bits (115), Expect = 1e-07
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSSQRSGCFGTFPGNY 149
AL++Y+P +D +L +GE + ++E+ W+ S +G G P N+
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64
Score = 36.2 bits (83), Expect = 0.003
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 11 RTAPKKLSEGQARAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR--IGTRRGIFPV 68
L + A ++ +L KGE + ++ + W++ + + G P
Sbjct: 4 NPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPF 62
Query: 69 TYVEQ 73
+V +
Sbjct: 63 NFVAK 67
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 45.4 bits (107), Expect = 3e-07
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
Y+ + L L G+ V + + + W+ G + + G FP N V
Sbjct: 21 YYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 45.0 bits (106), Expect = 5e-07
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 90 IDTHSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDDG-----WYVGSSQRSGCFGT 144
+ + + A N+ D ++ L EG+ V V++K D W + G
Sbjct: 11 LARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLI---DNGVTKGF 67
Query: 145 FPGNYVE 151
++++
Sbjct: 68 VYSSFLK 74
Score = 44.2 bits (104), Expect = 1e-06
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVD----NNWFEGRIGTRRGIFPVTYVEQQSRA 77
+A+ NF A L++SL++G+LV +I++ D N + G +G ++++ +
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 42.6 bits (100), Expect = 2e-06
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 98 PYHALYNYKPQNDDELELREGETVFVMEK-CDDGWYVGSSQRSGCFGTFPGNYVE 151
Y+ + L L G+ V + + + W+ G + + G FP N V
Sbjct: 12 EYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 42.7 bits (100), Expect = 5e-06
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKC---DDGWYVGS------SQRSGCFGTFPGNYVE 151
AL +Y + L + G+ V+V K ++ GS + G FP + V
Sbjct: 27 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 86
Score = 38.5 bits (89), Expect = 2e-04
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 8 DKIRTAPKKLSE--GQARAKFNFVAQTHLELSLVKGELVTL---IRRVDNNWFEGRIGT- 61
D+ A ++ S A A +++A L++ +G++V + ++ ++ G +
Sbjct: 9 DRKLCADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGD 68
Query: 62 -------RRGIFPVTYVEQQSRATPS 80
R G FP + V + P
Sbjct: 69 YYGDLAARLGYFPSSIVREDQTLKPG 94
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 34.6 bits (79), Expect = 0.002
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDG---WYVGSSQRS-GCFGTFPGNYVERAS 154
L ++ + EL ++ G+TV ++E+ + V +++RS G P + + +
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCISH 79
Score = 29.6 bits (66), Expect = 0.17
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 24 AKFNFVAQTHLELSLVKGELVTLIRRVDNN--WFEGRIGTR----RGIFPVTYVEQ 73
+F A ELS+ G+ V L+ R W R R G+ P + +
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 32.8 bits (74), Expect = 0.015
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 21 QARAKFNFVAQTHLELSLVKGELVTLIRRVDN--NWFEGRIGTRR-GIFPVTYVE 72
A+A + + ELS +GE + +IR DN + GR G T VE
Sbjct: 30 LAKACCDVKGGKN-ELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 32.9 bits (74), Expect = 0.045
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 101 ALYNYKPQNDDELELREGETVFVMEKCDDGWYVGSS 136
+ +P L G+ V++ G +
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHA 44
Score = 27.1 bits (59), Expect = 3.5
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 23 RAKFNFVAQTHLELSLVKGELVTLIRRVDNNWFEGR 58
R F L +G++ ++ + +
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSH 43
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 32.2 bits (74), Expect = 0.063
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDG---WYVGSSQRSGCFGTFPGNYVE 151
+AL++Y+PQNDDEL ++EG+ + ++ + D+ W+ ++ + G P N +
Sbjct: 173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWW--ARLNDKEGYVPRNLLG 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.18
Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 84/215 (39%)
Query: 1 MSSIIPYDK------IRTAPKKLSEGQARAKFNFVAQTHLELSLVKG-----------EL 43
M SI + + L G+ +E+SLV G L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGK-----------QVEISLVNGAKNLVVSGPPQSL 386
Query: 44 VTLIRRVDNNWFEGRIGTRRGIFPVTYVEQQSRATPSGAPVDQ-TLHIDTHSDPV--PYH 100
L + R + ++Q SR P + L PV P+H
Sbjct: 387 YGLNLTL------------RKAKAPSGLDQ-SRI-----PFSERKLKFSNRFLPVASPFH 428
Query: 101 ALYNYKPQNDDELE-LREGETVF--------VMEKCDDGWYVGSSQRSGCFGTFPGNYVE 151
+ P +D + L + F V + D GS R G+ E
Sbjct: 429 SHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-----GSDLRV-----LSGSISE 477
Query: 152 R-----ASLALRWVENASKL----IIGTAGADLDP 177
R L ++W E ++ I+ D P
Sbjct: 478 RIVDCIIRLPVKW-ETTTQFKATHIL-----DFGP 506
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 27.6 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 99 YHALYNYKPQNDDELELREGETVFVMEKCDDGW 131
+AL++Y + DEL REGE+V V+ +
Sbjct: 157 VYALWDYSAEFGDELSFREGESVTVLRRDGPEE 189
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor,
triphenyl mimics, DNA- binding, quorum sensing; HET:
OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A*
3jpu_A* 2uv0_E*
Length = 173
Score = 26.6 bits (58), Expect = 4.7
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 7/83 (8%)
Query: 93 HSDPVPYHALYNYKPQNDDELELREGETVFVMEKCDD-----GWYVGSSQRSGCFG--TF 145
DP H + P + + + E+ G + G G +
Sbjct: 71 RVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSL 130
Query: 146 PGNYVERASLALRWVENASKLII 168
RA L +
Sbjct: 131 SVEAENRAEANRFMESVLPTLWM 153
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 26.3 bits (57), Expect = 6.5
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 100 HALYNYKPQNDDE-------LELREGETVFVMEKCDDGWYVGSSQRSGC 141
+Y ++D+ + + + V EK ++ W++G + GC
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGC 90
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM
TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2;
2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A*
2qjp_A* 1zrt_C* 2yiu_A*
Length = 445
Score = 26.2 bits (58), Expect = 7.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 79 PSGAPVDQTLHIDTHSDPVPYHALYNYK 106
P+G V +T + D VP+ + K
Sbjct: 224 PTGVEVRRTSKAEAQKDTVPFWPYFIIK 251
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 26.4 bits (57), Expect = 7.5
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 104 NYKPQNDDELELREGETVFVMEKC-----DDGWYVGSSQRSGCFGTFPGNYV 150
N + L +G+ + + + GW G ++R+ G FP + V
Sbjct: 584 NPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCV 635
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase,
resistance to pyrazinamide, hydrolase; 2.20A
{Mycobacterium tuberculosis} PDB: 3pl1_A
Length = 186
Score = 26.0 bits (58), Expect = 7.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 167 IIGTAGADLDPSLNQCDSEFIVE 189
+ GT GAD PSL+ E +
Sbjct: 73 VSGTPGADFHPSLDTSAIEAVFY 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,953,288
Number of extensions: 167755
Number of successful extensions: 1039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 400
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)