BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15855
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 107/118 (90%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M WNAVIFGP TPFEDGTFKL +EF+EEYPNKPPTVRF SKMFHPNVYADG ICLDILQ
Sbjct: 34 MQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
NRWSPTYDVS+ILTSIQSLL +PNPNSPANS AAQLY+EN+REYEKRV A VEQS+ D
Sbjct: 94 NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWND 151
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 213 bits (543), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 110/118 (93%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W A+IFGP +TPFEDGTFKL++EFTEEYPNKPPTV+F SKMFHPNVYADG ICLDILQ
Sbjct: 34 LTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
NRWSPTYDV+AILTSIQSLL +PNPNSPANS+AAQLY+ENRREYEKRV+ VEQS+++
Sbjct: 94 NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWLN 151
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 110/118 (93%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W A+IFGP +TPFEDGTFKL++EFTEEYPNKPPTV+F SKMFHPNVYADG ICLDILQ
Sbjct: 37 LTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 96
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
NRWSPTYDV+AILTSIQSLL +PNPNSPANS+AAQLY+ENRREYEKRV+ VEQS+++
Sbjct: 97 NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWLN 154
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 195 bits (495), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 105/116 (90%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M+WNAVIFGP DTP++ GTFKL+++F+E+YPNKPPTVRF S+MFHPN+YADG ICLDILQ
Sbjct: 34 MLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116
N+WSP YDV+AILTSIQSLL DPNPNSPANS AA++Y E++REY +RV+ VEQS+
Sbjct: 94 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/116 (69%), Positives = 100/116 (86%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M+WNA+I GP DTP+EDGTF+L +EF EEYPNKPP V+F S+MFHPNVYA+G ICLDILQ
Sbjct: 34 MVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116
NRW+PTYDV++ILTSIQSL +DPNP SPAN AA L+K+++ +Y KRVK VE+S+
Sbjct: 94 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 70/107 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+P+ G F L + F +YP KPP V F +K++HPN+ + G ICLDIL+++
Sbjct: 53 WQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ 112
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL+DPNP+ P A LYK +R Y++ +
Sbjct: 113 WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAR 159
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 51 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 110
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 111 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 154
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 38 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 97
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 98 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 141
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+P++ G F LT+ F +YP KPP V F +K++HPN+ ++G ICLDIL+++
Sbjct: 38 WQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ 97
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP VS +L SI SLL DPNP+ P A +YK ++ +Y + +
Sbjct: 98 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAR 144
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 43 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 102
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 103 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 146
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 32 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 91
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 92 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 135
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 138
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 41 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 100
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 101 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 144
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 70/103 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+P+ G F L++ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 33 WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYE 105
WSP +S +L SI SLL+DPNP+ P A +YK +R YE
Sbjct: 93 WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYE 135
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 73/104 (70%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 43 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 102
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++Y+ +R +Y +
Sbjct: 103 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNR 146
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+ ++ G F LTV F +YP KPP + F +K++HPN+ ++G ICLDIL+++
Sbjct: 51 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 110
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP VS +L SI SLL DPNP+ P AQ+YK ++ +Y + +
Sbjct: 111 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 157
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+ ++ G F LTV F +YP KPP + F +K++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP VS +L SI SLL DPNP+ P AQ+YK ++ +Y + +
Sbjct: 95 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 141
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+ ++ G F LTV F +YP KPP + F +K++HPN+ ++G ICLDIL+++
Sbjct: 39 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 98
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP VS +L SI SLL DPNP+ P AQ+YK ++ +Y + +
Sbjct: 99 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 145
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
W P +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLD L+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 35 WQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 72/107 (67%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP ++P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+++
Sbjct: 36 WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 95
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL DPNP+ P A++YK +R Y + +
Sbjct: 96 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAR 142
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+++
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 138
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 75/112 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+++
Sbjct: 32 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 91
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 92 WSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+P+ G F L++ F +YP KPP + F +K++HPN+ A+G ICLDIL+++
Sbjct: 34 WQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ 93
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL+D NP+ P A +YK +R +YE +
Sbjct: 94 WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAR 140
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 75/112 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+++
Sbjct: 36 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 95
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 96 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 75/112 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+++
Sbjct: 51 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ 110
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 111 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+++
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP +S +L SI SLL DPNP+ P A++YK +R +Y +
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+ ++ G F LTV F +YP KPP + F +K++HPN+ ++G I LDIL+++
Sbjct: 39 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ 98
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP VS +L SI SLL DPNP+ P AQ+YK ++ +Y + + ++
Sbjct: 99 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 74/112 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HP + ++G I LDIL+++
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQ 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+++
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 95 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARA 142
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A + GP DT +E +KLT+EF +YP KPP V+F + +HPNV G ICLDIL+
Sbjct: 41 WVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN 100
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
W+ +YDV IL S+QSLL +PN SP N+ AA ++ N+ EY+K
Sbjct: 101 WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKK 143
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+++
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 99
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 100 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARA 147
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+++
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 96
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 97 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARA 144
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+++
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 97
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 98 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARA 145
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+++
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 93 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARA 140
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 13/126 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQN- 61
W ++ GP DT +E G FK ++F +YP KPP ++F S+++HPN+ +G +C+ IL +
Sbjct: 36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDP 95
Query: 62 ------------RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
RW P + V IL S+ S+L+DPN SPAN AA++ +EN E++K+V
Sbjct: 96 GDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVA 155
Query: 110 ACVEQS 115
CV +S
Sbjct: 156 QCVRRS 161
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
M W I G T +E G +KLT+ F EEYP +PP RF +FHPNVY G +CL IL
Sbjct: 45 MNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN 104
Query: 60 -QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
+ W P + IL IQ LL DPN SPA + A ++K+++ EYEKRV+A
Sbjct: 105 EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRA 156
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 72/103 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+N +I GP TP+E GT+KL + E+YP +PP VRF +K++HPN+ G ICLDIL+++
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYE 105
WSP + +L SIQ+LLS P P+ P +S A+ +K+++ + E
Sbjct: 93 WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAE 135
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W A I GP D+P++ G F L V F +YP K P V F +K++HPN+ +G ICLDIL+++
Sbjct: 36 WTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ 95
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL+DPNP+ P + A + + N++++E +
Sbjct: 96 WSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAR 142
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 72/103 (69%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+N +I GP TP+E GT+KL + E+YP +PP VRF +K++HPN+ G ICLDIL+++
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK 92
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYE 105
WSP + +L SIQ+LLS P P+ P +S A+ +K+++ + E
Sbjct: 93 WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAE 135
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN SPA + A +Y +NR EYEKRV+A
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN +PA + A +Y +NR EYEKRV+A
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 13/128 (10%)
Query: 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL-- 59
IW+ +I GP DTP+ DG F +EF ++YP PP + F + HPN+Y +G +C+ IL
Sbjct: 36 IWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHS 95
Query: 60 -----------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRV 108
+ RWSP V IL S+ S+LS+PN S AN A L+++NR E+E++V
Sbjct: 96 PGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQV 155
Query: 109 KACVEQSF 116
K + +S
Sbjct: 156 KLSILKSL 163
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 41 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 100
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 101 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 152
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 98
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 150
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 41 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 100
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 101 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 152
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 44 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 103
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 104 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 155
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 40 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 99
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 100 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 151
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYAD-GGICLDILQN 61
W I GP TP+E G F L + +YP PP ++F +K++HPN+ + G ICLD+L+N
Sbjct: 55 WVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKN 114
Query: 62 RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP + L SIQ+LLSDP P+ P ++ A++YKEN + K
Sbjct: 115 EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVK 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 13/127 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A+I GP DT FE G F + F +YP PP +RF +MFHPN+Y DG +C+ IL
Sbjct: 40 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 99
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
RWSP V IL S+ S+L++PN S AN A+++++++R ++ K K
Sbjct: 100 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 159
Query: 110 ACVEQSF 116
V++S
Sbjct: 160 QIVQKSL 166
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 13/127 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A+I GP DT FE G F + F +YP PP +RF +MFHPN+Y DG +C+ IL
Sbjct: 36 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 95
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
RWSP V IL S+ S+L++PN S AN A+++++++R ++ K K
Sbjct: 96 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 155
Query: 110 ACVEQSF 116
V++S
Sbjct: 156 QIVQKSL 162
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 104 bits (260), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 13/127 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A+I GP DT FE G F + F +YP PP +RF +MFHPN+Y DG +C+ IL
Sbjct: 42 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 101
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
RWSP V IL S+ S+L++PN S AN A+++++++R ++ K K
Sbjct: 102 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 161
Query: 110 ACVEQSF 116
V++S
Sbjct: 162 QIVQKSL 168
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 13/127 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A+I GP DT FE G F + F +YP PP +RF +MFHPN+Y DG +C+ IL
Sbjct: 39 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 98
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
RWSP V IL S+ S+L++PN S AN A+++++++R ++ K K
Sbjct: 99 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 158
Query: 110 ACVEQSF 116
V++S
Sbjct: 159 QIVQKSL 165
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHP VY G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNV G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G + L IL+
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILE 98
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A ++
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKK 154
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G + L IL+
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE 98
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 110
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRA 150
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W + I GP + +E G F L + FT EYP KPP V F ++++H N+ + G ICLDIL++
Sbjct: 80 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 139
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL+D NP P A Y NR E+++ +
Sbjct: 140 WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 186
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 62/96 (64%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W I G T +ED +KL++EF YP PTV+F + +HPNV G I LDIL+ +
Sbjct: 62 WVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK 121
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYK 98
WS YDV IL SIQSLL +PN +SP N+ AA+L+K
Sbjct: 122 WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK 157
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A I G T + G + +TVE+ EYP+KPP V+F + +HPNVY G ICL IL
Sbjct: 41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + I+ +Q LL PNPNSPA A + + N+ EY+K+V +Q
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQ 154
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W A I G T + G + +TVE+ EYP+KPP V+F + +HPNVY G ICL IL
Sbjct: 43 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + I+ +Q LL PNPNSPA A + + N+ EY+K+V +Q
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQ 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%), Gaps = 14/123 (11%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL--- 59
W +I GP DT +E G FK + F ++YP +PP ++F ++++HPNV +G +C+ IL
Sbjct: 50 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEP 109
Query: 60 ----------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRR-EYEKRV 108
+ RW P + V I+ S+ S+L+DPN +SPAN AA+ ++E+R E++++V
Sbjct: 110 GEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
Query: 109 KAC 111
C
Sbjct: 170 ARC 172
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
W + I GP + +E G F L + F+ +YP KPP V F ++++H N+ + G ICLDIL++
Sbjct: 35 WRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP +S +L SI SLL+D NP P A Y NR E+++ +
Sbjct: 95 WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 141
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 4 NAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNR 62
GP TP+E G F + +E EYP KPP ++F +K++HPN+ + G ICLDIL+N
Sbjct: 35 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
WSP + + L S+Q+LL P PN P ++ AQ Y +R + K
Sbjct: 95 WSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 5 AVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRW 63
GP TP+E G F + +E EYP KPP ++F +K++HPN+ + G ICLDIL+N W
Sbjct: 37 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAW 96
Query: 64 SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
SP + + L S+Q+LL P PN P ++ AQ Y +R + K
Sbjct: 97 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+ I GP +P+EDG F+L + ++YP + P VRF +K++HPN+ G ICLD+L+
Sbjct: 37 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN 96
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
WSP + +L SIQ+LL+ PNPN P + A+ + +N + + + +
Sbjct: 97 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAR 143
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+ I GP +P+EDG F+L + ++YP + P VRF +K++HPN+ G ICLD+L+
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSP-ANSMA------AQLYKENRREYEK 106
WSP + +L SIQ+LL+ PNPN P AN +A Q K RE+ K
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 19/135 (14%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W IFGP +T +E G FK ++F +YP PP RF +KM+HPN+Y G +C+ IL
Sbjct: 40 WEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPP 99
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR------RE 103
RW+PT +V IL S+ SLL++PN SPAN A+ +Y++ + RE
Sbjct: 100 VDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 159
Query: 104 YEKRVKACVEQSFID 118
Y ++ V + +D
Sbjct: 160 YTDIIRKQVLGTKVD 174
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 19/135 (14%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-- 60
W IFGP +T +E G FK ++F +YP PP RF +KM+HPN+Y G +C+ IL
Sbjct: 37 WEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPP 96
Query: 61 -----------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR------RE 103
RW+PT +V IL S+ SLL++PN SPAN A+ +Y++ + RE
Sbjct: 97 VDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDRE 156
Query: 104 YEKRVKACVEQSFID 118
Y ++ V + +D
Sbjct: 157 YTDIIRKQVLGTKVD 171
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYAD-GGICLDILQN 61
W I GP TP+E G F L + +YP PP ++F +K++HPN+ + G ICLDIL++
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 62 RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVE 113
WSP + L SIQ++L+DP P P ++ A++ EN + + K E
Sbjct: 137 EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 5 AVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL----Q 60
A I G +TP+E G FKL V E YP +PP +RF + ++HPN+ + G ICLD+L +
Sbjct: 38 AQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPK 97
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P+ +++ +LTSIQ L+S+PNP+ P + + +K N+ + K + E+
Sbjct: 98 GAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+ I GP +P+EDG F+L + ++YP + P VRF +K++HPN+ G I LD+L+
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTN 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSP-ANSMA------AQLYKENRREYEK 106
WSP + +L SIQ+LL+ PNPN P AN +A Q K RE+ K
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDILQNRWSPT 66
+GP TP+E G +K+ V+ ++YP K P++ F +K+FHPN+ A G +CLD++ W+
Sbjct: 58 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTAL 117
Query: 67 YDVSAILTS-IQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
YD++ I S + LL+ PNP P N AA +Y EY++++K +++
Sbjct: 118 YDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 166
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPT 66
I GP TP+ G F++ + +++P PP F +K+FHPNV A+G IC+++L+ W+
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAE 108
Query: 67 YDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVE 113
+ +L +I+ LL PNP S N A +L EN EY R + E
Sbjct: 109 LGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 155
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR 62
+ I GP +P+EDG F+L + ++YP + P VRF +K++HP + G I LD+L+
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTN 94
Query: 63 WSPTYDVSAILTSIQSLLSDPNPNSP-ANSMA------AQLYKENRREYEK 106
WSP + +L SIQ+LL+ PNPN P AN +A Q K RE+ K
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 6 VIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSP 65
VI P + + G+ ++F E YP +PP V K+FHPN+ G +CL+IL+ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
D+ +I+T + L +PNPN P N AA+L E +E+ + V+ + I+
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 180
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 65/112 (58%)
Query: 6 VIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSP 65
++ P + ++ G F + + + YP+ PP V+ + ++HPN+ +G +CL+IL+ W P
Sbjct: 39 LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKP 98
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117
+++I+ +Q L +PNP P N AA++ + NRR +E+ V+ +I
Sbjct: 99 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGGYI 150
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDILQN 61
++ + GP+ T +E G +K+ V ++YP P++ F +K+ HPNV A G +CLD++
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 62 RWSPTYDVSAIL-TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVE 113
W+P Y + + + LL+ PNP+ P NS AA L +++ YE++VK V+
Sbjct: 91 TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 65/112 (58%)
Query: 6 VIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSP 65
++ P + ++ G F + + + YP+ PP V+ + ++HPN+ +G + L+IL+ W P
Sbjct: 59 LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKP 118
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117
+++I+ +Q L +PNP P N AA++ + NRR +E+ V+ + +I
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYI 170
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 9 GPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDILQNRWSPTY 67
GP TP+EDGT+ L V+ +YP K P++ F +++ HPNV G +CLD++ W+P Y
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 68 DVSAIL-TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACV 112
+ I + LL PNP+ P N AA L +R ++ ++ V
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHV 151
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRWSP 65
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL+++W+
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 100
+ +L S+Q+LL+ P+ P +++ A YK+N
Sbjct: 120 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 154
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRWSP 65
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL+++W+
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 100
+ +L S+Q+LL+ P+ P +++ A YK+N
Sbjct: 105 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 139
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRWSP 65
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL+++W+
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 100
+ +L S+Q+LL+ P+ P +++ A YK+N
Sbjct: 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 141
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W +I P + P++ G F++ + F EYP KPP + F +K++HPN+ G +CL ++
Sbjct: 35 LTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVIS 93
Query: 61 -NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
W P ++ S+ +L++DP P P + A+ Y ++R+++ K
Sbjct: 94 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK 140
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRWSP 65
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL+++W+
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 100
+ +L S+Q+LL+ P+ P +++ A YK+N
Sbjct: 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 138
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W +I P + P++ G F++ + F EYP KPP + F +K++HPN+ G +CL ++
Sbjct: 33 LTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVIS 91
Query: 61 -NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
W P ++ S+ +L++DP P P + A+ Y ++R+++ K
Sbjct: 92 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK 138
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 7 IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDILQNRWSP 65
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL+++W+
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 100
+ +L S+Q+LL+ P+ P +++ A YK+N
Sbjct: 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQN 190
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++W+A++ P P+ F L + F EYP KPP ++F +K++HPNV +G ICL I+
Sbjct: 35 LVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS 93
Query: 61 NR-WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
+ W P +L ++ L++ PN P A L +N + K
Sbjct: 94 SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 140
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++W+A++ P P+ F L + F EYP KPP ++F +K++HPNV +G ICL I+
Sbjct: 32 LVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS 90
Query: 61 NR-WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 106
+ W P +L ++ L++ PN P A L +N + K
Sbjct: 91 SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 137
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI-CLDIL 59
M W I G ++ ++ F+LT+ FT EY PP V+F + FHPNV G C+D L
Sbjct: 53 MEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL 112
Query: 60 QN--RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
N +W+ Y +S+IL ++Q +LS+P +P N AA++ ++ Y ++
Sbjct: 113 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFA-SKMFHPNVY-ADGGICLDILQ 60
W A+I GP DTP+E+ F++ +E YP PP + F + + H NV A G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 61 -NRWSPTYDVSAILTSIQSLLSDPNPNSPAN 90
W+P +D+ + ++ LL +P +SP +
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLD 140
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFA-SKMFHPNVY-ADGGICLDILQ 60
W A+I GP DTP+E+ F++ +E YP PP + F + + H NV A G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 61 -NRWSPTYDVSAILTSIQSLLSDPNPNSPAN-SMAAQLYKENRREYEKRVK 109
W+P +D+ + ++ LL +P +SP + + A + + Y+ VK
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFA-SKMFHPNVY-ADGGICLDILQ 60
W A+I GP DTP+E+ F++ +E YP PP + F + + H NV A G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 61 -NRWSPTYDVSAILTSIQSLLSDPNPNSPAN 90
W+P +D+ + ++ LL +P +SP +
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLD 140
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFA-----SKMFHPNVYADGGICL 56
I +I GP DTP+ +G F+ V F ++YP+ PP V S F+PN+Y DG +CL
Sbjct: 111 IXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCL 170
Query: 57 DIL-------QNRWSP-TYDVSAILTSIQSLL--SDPNPNSPA--NSMAAQLYKENRREY 104
IL + +W+P T +L S+QSL+ ++P N P S ++ REY
Sbjct: 171 SILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230
Query: 105 EKRVK 109
+ ++
Sbjct: 231 DGNIR 235
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKM-FHPNVYADGGICLDILQ 60
IW G +T + + +KL + F ++YP KPP V F K H +VY++G ICL +L
Sbjct: 37 IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG 96
Query: 61 NRWSPTYDVSAILTSIQSLLS 81
+ ++P+ +S ++ SI S+LS
Sbjct: 97 DDYNPSLSISGLVLSIISMLS 117
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKM-FHPNVYADGGICLDILQ 60
IW G +T + + +K+ + F + YP KPP V F K H +VY++G ICL +L
Sbjct: 51 IWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG 110
Query: 61 NRWSPTYDVSAILTSIQSLLS 81
+ ++P+ +S ++ SI S+LS
Sbjct: 111 DDYNPSLSISGLILSIISMLS 131
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMF--HPNVYADGGICLDILQ 60
W + G T +E F+L +F+ YP P V F + HP+VY++G ICL IL
Sbjct: 56 WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115
Query: 61 NRWSPTYDVSAILTSIQSLLS 81
WSP V ++ SI S+LS
Sbjct: 116 EDWSPALSVQSVCLSIISMLS 136
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR------W 63
P + ++ G F+ E + Y PP V+ +K++HPN+ G ICL +L+ W
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 64 SPTYDVSAILTSIQSLLSD-PNPNSPANSMAAQLYKENRREYEKRV 108
+PT + ++ + SL +D N + P N AA+ + ++ ++ +V
Sbjct: 113 APTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 3 WNAVIFGPHDTPFEDG--TFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W + P D+ + T++L+V F+++YP++PPTVRF + ++ P V +GGIC ++
Sbjct: 52 WILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN 111
Query: 61 NRWSPTYDVSAIL 73
+ W+P S ++
Sbjct: 112 DFWTPDQHASDVI 124
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR------W 63
P + ++ G F+ E + Y PP V+ +K++HPN+ G ICL +L+ W
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 64 SPTYDVSAILTSIQSLLSD-PNPNSPANSMAAQLYKENRREYEKRV 108
+PT + ++ + SL +D N + P N AA+ + ++ ++ +V
Sbjct: 113 APTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC---LDIL 59
W+ IFG T FE+ + LT+ + YP+ PPTV+F +K+ V G + L IL
Sbjct: 61 WSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL 120
Query: 60 QNRWSPTYDVSAILTSI-QSLLSDPNPNSP 88
+N W+ Y + IL S+ Q +LS N P
Sbjct: 121 KN-WNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC---LDIL 59
W+ IFG T FE+ + LT+ + YP+ PPTV+F +K+ V G + L IL
Sbjct: 57 WSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL 116
Query: 60 QNRWSPTYDVSAILTSI-QSLLSDPNPNSP 88
+N W+ Y + IL S+ Q +LS N P
Sbjct: 117 KN-WNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPN--VYADGGICLDILQ 60
W+ V+ GP TP+E G + + F E+P KPP++ M PN + +CL I
Sbjct: 46 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLCLSITD 101
Query: 61 ---NRWSPTYDVSAILTSIQSLLSDPNPN 86
+ W+P + VS ILT + S + + P
Sbjct: 102 FHPDTWNPAWSVSTILTGLLSFMVEKGPT 130
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CLDI 58
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ + +
Sbjct: 43 WTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 102
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 103 LA-KWQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CLDI 58
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ + +
Sbjct: 71 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 130
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 131 LA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CLDI 58
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ + +
Sbjct: 61 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 120
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 121 LA-KWQNSYSIKVVLQELRRLM 141
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC----LDI 58
W +I GP T +E+ + L VE +YP PP+VRF +K+ + G+ + +
Sbjct: 46 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 105
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 106 LA-KWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC----LDI 58
W +I GP T +E+ + L VE +YP PP+VRF +K+ + G+ + +
Sbjct: 40 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 99
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 100 LA-KWQNSYSIKVVLQELRRLM 120
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC----LDI 58
W +I GP T +E+ + L VE +YP PP+VRF +K+ + G+ + +
Sbjct: 41 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 100
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 101 LA-KWQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGIC----LDI 58
W +I GP T +E+ + L VE +YP PP+VRF +K+ + G+ + +
Sbjct: 51 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 110
Query: 59 LQNRWSPTYDVSAILTSIQSLL 80
L +W +Y + +L ++ L+
Sbjct: 111 LA-KWQNSYSIKVVLQELRRLM 131
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDILQN 61
WN I GP + E+ + L+++ YP+ PP V F SK+ P V G + D
Sbjct: 42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 101
Query: 62 R-WSPTYDVSAILTSIQSLLSDP 83
R W Y + +L ++ ++ P
Sbjct: 102 RDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDILQN 61
WN I GP + E+ + L+++ YP+ PP V F SK+ P V G + D
Sbjct: 41 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 100
Query: 62 R-WSPTYDVSAILTSIQSLLSDP 83
R W Y + +L ++ ++ P
Sbjct: 101 RDWKRAYTMETLLLDLRKEMATP 123
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 22 LTVEFTEEYPNKPPTVRFASKMFHPN-VYADGGICLDILQNR-WSPTYDVSAILTSIQSL 79
L F + +P PP VR S + V G IC+++L + WS Y + +++ I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 80 LS--------DPNPNSPANSMAAQLYKENRREYEK 106
L N + + + A Q YK + +EK
Sbjct: 132 LVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEK 166
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 22 LTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81
+ V+ EY +P +R K P V +C+ L + + + L S++ L++
Sbjct: 113 IRVDKITEYLCEP--LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 82 DPNPNSPANSMAA 94
D NP AN++AA
Sbjct: 171 DSNPMVVANAVAA 183
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 22 LTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81
+ V+ EY +P +R K P V +C+ L + + + L S++ L++
Sbjct: 113 IRVDKITEYLCEP--LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 82 DPNPNSPANSMAA 94
D NP AN++AA
Sbjct: 171 DSNPMVVANAVAA 183
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 22 LTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81
+ V+ EY +P +R K P V +C+ L + + + L +++ L+S
Sbjct: 113 IRVDKITEYLCEP--LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDTLKDLIS 170
Query: 82 DPNPNSPANSMAA 94
D NP AN +AA
Sbjct: 171 DSNPMVVANRVAA 183
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 6 VIFGPHDTPFEDGTFKLTVEFTEEYPN---KPPTVRF-----ASKMFHP-NVYADGG 53
++ G DT +D + K+TV F + PN + P R+ A+ + P N+YA GG
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGG 255
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF 39
+GPH +D T + E E+ K P VRF
Sbjct: 269 YGPHTMSGDDPTRYRSKELENEWAKKDPLVRF 300
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF 39
+GPH +D T + E E+ K P VRF
Sbjct: 268 YGPHTMSGDDPTRYRSKELENEWAKKDPLVRF 299
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF 39
+GPH +D T + E E+ K P VRF
Sbjct: 268 YGPHTMSGDDPTRYRSKELENEWAKKDPLVRF 299
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF 39
+GPH +D T + E E+ K P VRF
Sbjct: 269 YGPHTMSGDDPTRYRSKELENEWAKKDPLVRF 300
>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
Length = 347
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLY 97
T D++++L +QSL +P+P +P + LY
Sbjct: 29 TVDLTSVLRHVQSL--EPDPGTPGSERTEALY 58
>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
Length = 347
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 66 TYDVSAILTSIQSLLSDPNPNSPANSMAAQLY 97
T D++++L +QSL +P+P +P + LY
Sbjct: 29 TVDLTSVLRHVQSL--EPDPGTPGSERTEALY 58
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 56 LDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++ +QN S Y++ + ++++L S ++A LYK+ R+ E +KA + Q
Sbjct: 37 VEAIQNSTSIKYNLEELYQAVENLCS--------YKISANLYKQLRQICEDHIKAQIHQ 87
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 56 LDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++ +QN S Y++ + ++++L S ++A LYK+ R+ E +KA + Q
Sbjct: 52 VEAIQNSTSIKYNLEELYQAVENLCS--------YKISANLYKQLRQICEDHIKAQIHQ 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,880,606
Number of Sequences: 62578
Number of extensions: 144409
Number of successful extensions: 428
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 132
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)