Query psy15855
Match_columns 118
No_of_seqs 161 out of 1039
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:06:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 4.7E-50 1E-54 267.0 12.4 117 1-117 31-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.7E-49 3.7E-54 268.9 13.2 117 1-117 36-152 (153)
3 KOG0419|consensus 100.0 7.1E-48 1.5E-52 251.0 12.1 117 1-117 34-150 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.9E-45 8.6E-50 249.2 14.9 117 1-117 32-148 (152)
5 KOG0425|consensus 100.0 4.1E-45 9E-50 244.1 12.9 118 1-118 36-166 (171)
6 PLN00172 ubiquitin conjugating 100.0 1.3E-44 2.8E-49 245.5 14.8 116 1-116 31-146 (147)
7 KOG0424|consensus 100.0 1.3E-42 2.9E-47 229.1 11.8 117 1-117 39-157 (158)
8 PF00179 UQ_con: Ubiquitin-con 100.0 3E-41 6.6E-46 227.0 12.2 112 1-112 28-140 (140)
9 KOG0418|consensus 100.0 1.5E-40 3.2E-45 228.1 11.2 115 3-117 38-153 (200)
10 smart00212 UBCc Ubiquitin-conj 100.0 2.8E-39 6.1E-44 218.6 14.8 115 1-115 29-144 (145)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.4E-39 3.1E-44 219.2 12.7 112 1-112 29-141 (141)
12 KOG0421|consensus 100.0 4.6E-39 1E-43 212.6 8.8 113 1-114 59-171 (175)
13 KOG0426|consensus 100.0 1.7E-38 3.6E-43 207.4 11.1 116 1-116 35-163 (165)
14 KOG0416|consensus 100.0 2.5E-38 5.5E-43 214.1 9.2 116 2-117 31-148 (189)
15 KOG0420|consensus 100.0 1.6E-37 3.4E-42 210.5 10.0 114 2-116 61-174 (184)
16 KOG0422|consensus 100.0 5.7E-36 1.2E-40 196.8 12.8 116 1-117 33-149 (153)
17 KOG0423|consensus 100.0 1.2E-31 2.5E-36 182.4 6.3 112 4-115 43-154 (223)
18 KOG0427|consensus 99.9 3.8E-25 8.2E-30 144.6 9.0 89 2-90 45-135 (161)
19 KOG0429|consensus 99.9 1.7E-24 3.7E-29 152.3 11.3 115 1-116 49-169 (258)
20 KOG0894|consensus 99.9 2.8E-22 6.1E-27 140.7 13.0 83 1-85 35-120 (244)
21 KOG0428|consensus 99.7 7.5E-18 1.6E-22 120.7 8.6 79 1-81 40-121 (314)
22 KOG0895|consensus 99.7 7.8E-17 1.7E-21 133.2 6.0 80 4-83 884-972 (1101)
23 KOG0896|consensus 99.4 4.4E-13 9.6E-18 88.2 7.0 80 2-81 40-122 (138)
24 KOG0895|consensus 99.4 4.5E-13 9.7E-18 111.3 7.9 81 3-83 314-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 1.1E-08 2.4E-13 68.3 7.4 67 16-82 34-106 (133)
26 PF05743 UEV: UEV domain; Int 98.7 3.2E-08 7E-13 65.1 5.0 68 14-82 42-117 (121)
27 KOG0897|consensus 98.6 7.1E-08 1.5E-12 62.1 5.3 89 21-110 14-108 (122)
28 KOG2391|consensus 97.9 7E-05 1.5E-09 56.7 7.1 71 13-84 61-139 (365)
29 PF05773 RWD: RWD domain; Int 95.5 0.044 9.5E-07 34.5 5.0 31 12-42 43-73 (113)
30 PF08694 UFC1: Ubiquitin-fold 95.4 0.022 4.9E-07 38.4 3.4 71 3-73 50-135 (161)
31 PF14457 Prok-E2_A: Prokaryoti 95.3 0.035 7.7E-07 38.3 4.5 61 21-81 56-125 (162)
32 PF14462 Prok-E2_E: Prokaryoti 95.2 0.33 7.1E-06 32.0 8.4 68 10-81 35-120 (122)
33 smart00591 RWD domain in RING 94.1 0.072 1.6E-06 33.2 3.2 25 17-41 40-64 (107)
34 PF14460 Prok-E2_D: Prokaryoti 89.3 0.57 1.2E-05 32.6 3.5 46 40-88 89-137 (175)
35 KOG3357|consensus 82.8 3.2 6.9E-05 27.7 4.3 69 3-72 53-137 (167)
36 PF06113 BRE: Brain and reprod 76.7 10 0.00022 29.2 5.9 57 14-76 61-120 (333)
37 TIGR03737 PRTRC_B PRTRC system 76.6 4.2 9E-05 29.7 3.7 41 41-85 131-175 (228)
38 KOG4018|consensus 72.5 3.7 8E-05 29.6 2.5 19 19-37 50-68 (215)
39 PF09765 WD-3: WD-repeat regio 72.2 2.2 4.9E-05 32.1 1.4 49 18-80 137-186 (291)
40 cd00421 intradiol_dioxygenase 62.9 13 0.00028 24.9 3.6 25 17-41 65-90 (146)
41 KOG0309|consensus 61.6 18 0.00038 31.2 4.7 35 6-41 454-490 (1081)
42 cd03457 intradiol_dioxygenase_ 59.5 15 0.00033 25.8 3.6 26 16-41 85-110 (188)
43 KOG0177|consensus 59.4 2.5 5.5E-05 29.9 -0.4 62 20-81 98-165 (200)
44 cd03459 3,4-PCD Protocatechuat 51.4 26 0.00056 24.0 3.6 25 17-41 72-101 (158)
45 PF03366 YEATS: YEATS family; 43.5 75 0.0016 19.3 5.0 39 2-42 3-41 (84)
46 KOG0662|consensus 43.1 24 0.00053 25.4 2.4 56 32-87 167-226 (292)
47 PF11333 DUF3135: Protein of u 42.4 52 0.0011 20.1 3.5 25 92-116 8-32 (83)
48 cd05845 Ig2_L1-CAM_like Second 41.8 66 0.0014 20.0 4.1 26 15-42 16-41 (95)
49 PF14455 Metal_CEHH: Predicted 41.5 70 0.0015 22.1 4.3 36 6-42 41-76 (177)
50 PF12018 DUF3508: Domain of un 40.2 44 0.00095 24.9 3.6 29 88-116 238-266 (281)
51 PF06113 BRE: Brain and reprod 40.1 43 0.00092 25.9 3.5 24 18-41 306-329 (333)
52 cd05777 DNA_polB_delta_exo DED 39.0 1.2E+02 0.0027 21.5 5.7 64 49-116 147-214 (230)
53 PF01175 Urocanase: Urocanase; 38.9 52 0.0011 27.1 3.9 26 91-116 272-297 (546)
54 KOG4445|consensus 38.5 42 0.0009 25.8 3.2 25 18-42 45-69 (368)
55 TIGR02423 protocat_alph protoc 37.5 53 0.0011 23.3 3.4 25 16-40 95-124 (193)
56 PF13950 Epimerase_Csub: UDP-g 37.5 38 0.00082 19.3 2.3 18 62-79 37-54 (62)
57 PRK05414 urocanate hydratase; 36.3 56 0.0012 26.9 3.8 26 91-116 282-307 (556)
58 cd03463 3,4-PCD_alpha Protocat 35.4 61 0.0013 22.8 3.5 24 17-40 92-120 (185)
59 TIGR01228 hutU urocanate hydra 35.3 60 0.0013 26.6 3.8 26 91-116 273-298 (545)
60 PF00779 BTK: BTK motif; Inte 30.4 20 0.00044 17.9 0.3 15 43-57 2-17 (32)
61 COG3866 PelB Pectate lyase [Ca 29.5 99 0.0022 23.9 3.9 39 2-41 198-240 (345)
62 PF15572 Imm26: Immunity prote 28.1 66 0.0014 20.3 2.4 26 10-40 7-32 (96)
63 TIGR02439 catechol_proteo cate 26.6 97 0.0021 23.4 3.5 25 16-40 179-221 (285)
64 COG2987 HutU Urocanate hydrata 25.0 2.5E+02 0.0053 23.1 5.5 26 91-116 282-307 (561)
65 KOG1047|consensus 24.6 84 0.0018 26.2 2.9 29 13-42 248-279 (613)
66 PF09943 DUF2175: Uncharacteri 24.6 83 0.0018 20.0 2.4 20 1-22 1-20 (101)
67 cd03461 1,2-HQD Hydroxyquinol 24.5 1.1E+02 0.0024 23.0 3.4 25 16-40 171-213 (277)
68 KOG2851|consensus 23.8 2.3E+02 0.005 22.4 5.0 30 50-79 335-369 (412)
69 PF13086 AAA_11: AAA domain; P 22.9 52 0.0011 22.4 1.4 9 5-13 20-28 (236)
70 TIGR02438 catachol_actin catec 22.0 1.4E+02 0.003 22.6 3.5 25 16-40 183-225 (281)
71 cd03460 1,2-CTD Catechol 1,2 d 21.9 1.4E+02 0.0029 22.6 3.5 25 16-40 175-217 (282)
72 cd05780 DNA_polB_Kod1_like_exo 21.9 2.2E+02 0.0048 19.6 4.4 61 50-115 121-185 (195)
73 KOG3696|consensus 21.8 87 0.0019 24.1 2.4 26 29-54 304-329 (334)
74 cd03464 3,4-PCD_beta Protocate 21.6 1.4E+02 0.0031 21.6 3.4 25 16-40 121-152 (220)
75 PRK14052 effector protein; Pro 21.3 22 0.00047 27.5 -0.9 31 44-74 347-384 (387)
76 COG2819 Predicted hydrolase of 21.1 1.6E+02 0.0035 22.0 3.7 30 12-41 15-46 (264)
77 COG1225 Bcp Peroxiredoxin [Pos 21.1 1.6E+02 0.0034 20.2 3.4 31 48-80 126-156 (157)
78 PF09606 Med15: ARC105 or Med1 20.6 33 0.00072 29.6 0.0 24 21-44 717-740 (799)
79 PF09280 XPC-binding: XPC-bind 20.5 1.8E+02 0.0039 16.4 3.1 23 88-110 33-55 (59)
80 PF02563 Poly_export: Polysacc 20.3 1.5E+02 0.0033 17.4 2.9 36 47-82 34-69 (82)
81 TIGR02422 protocat_beta protoc 20.3 1.6E+02 0.0035 21.3 3.4 25 16-40 116-147 (220)
No 1
>KOG0417|consensus
Probab=100.00 E-value=4.7e-50 Score=267.01 Aligned_cols=117 Identities=46% Similarity=0.931 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+|+||+|+|++.|+|+.+|..||++|++||
T Consensus 31 ~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL 110 (148)
T KOG0417|consen 31 FHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLL 110 (148)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
.+|++++|++.++|.+|+.|+.+|++.||++++++++
T Consensus 111 ~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 111 SDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999875
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=268.95 Aligned_cols=117 Identities=56% Similarity=1.045 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
++|+++|.||++|+||||+|++.|.||++||++||+|+|.++||||||+.+|+||+|+|+++|+|++++++||.+|+++|
T Consensus 36 ~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL 115 (153)
T COG5078 36 FHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLL 115 (153)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
.+||.++|+|.+||++|++|+++|.++||++++++.+
T Consensus 116 ~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 116 LSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred cCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999875
No 3
>KOG0419|consensus
Probab=100.00 E-value=7.1e-48 Score=251.00 Aligned_cols=117 Identities=84% Similarity=1.350 Sum_probs=115.3
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
|+|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++|||||+++|.+|+|+|...|+|.+++.+||.+||+||
T Consensus 34 M~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 34 MEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLL 113 (152)
T ss_pred eeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
.+|++++|+|.+||++|++|+++|.++|++.+++|..
T Consensus 114 ~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 114 NDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS 150 (152)
T ss_pred cCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999865
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.9e-45 Score=249.15 Aligned_cols=117 Identities=39% Similarity=0.775 Sum_probs=114.2
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
++|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|.+.|+|++++.+||++|+++|
T Consensus 32 ~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll 111 (152)
T PTZ00390 32 RHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALL 111 (152)
T ss_pred cEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
.+|++++|+|.+||++|++|+++|+++|+++++++.+
T Consensus 112 ~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 112 SAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred hCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988764
No 5
>KOG0425|consensus
Probab=100.00 E-value=4.1e-45 Score=244.14 Aligned_cols=118 Identities=49% Similarity=0.923 Sum_probs=114.2
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC-------------CCCCCCC
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-------------NRWSPTY 67 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~-------------~~W~p~~ 67 (118)
++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.|+||||||+++|.+|++||. +.|+|..
T Consensus 36 f~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~ 115 (171)
T KOG0425|consen 36 FEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQ 115 (171)
T ss_pred eEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCcc
Confidence 589999999999999999999999999999999999999999999999999999999994 4699999
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy15855 68 DVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118 (118)
Q Consensus 68 ~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~~ 118 (118)
|+++||++|.+||.+||.++|+|-+||+.|++++++|.++|++||++|+++
T Consensus 116 tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 116 TVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQEE 166 (171)
T ss_pred chhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999763
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-44 Score=245.49 Aligned_cols=116 Identities=45% Similarity=0.921 Sum_probs=113.3
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||+.+|.||++++.+.|+|++++++||.+|+++|
T Consensus 31 ~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll 110 (147)
T PLN00172 31 FRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLL 110 (147)
T ss_pred heEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.+|++++|+|.+||++|++|+++|.++|+++++++.
T Consensus 111 ~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 111 TDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred hCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998764
No 7
>KOG0424|consensus
Probab=100.00 E-value=1.3e-42 Score=229.15 Aligned_cols=117 Identities=44% Similarity=0.855 Sum_probs=113.6
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCC--CCCCCCHHHHHHHHHH
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR--WSPTYDVSAILTSIQS 78 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~--W~p~~~i~~vl~~i~~ 78 (118)
+.|+|.|.|++||+||||.|.+.+.||++||.+||+++|.+++|||||+.+|.|||++|.++ |+|+.||.+||.+||.
T Consensus 39 ~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqd 118 (158)
T KOG0424|consen 39 MNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQD 118 (158)
T ss_pred EEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999865 9999999999999999
Q ss_pred hhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 79 LLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 79 ll~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
||.+||..+|+|.||..+|.+|+.+|+++||.++.++..
T Consensus 119 LL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 119 LLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred HhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988754
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3e-41 Score=227.01 Aligned_cols=112 Identities=51% Similarity=1.024 Sum_probs=103.3
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCC-CCCCCCCHHHHHHHHHHh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQN-RWSPTYDVSAILTSIQSL 79 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~-~W~p~~~i~~vl~~i~~l 79 (118)
++|+++|.||+||+|+||+|+|+|.||++||++||+|+|.|+++||||+.+|.||+++|.. .|+|++++.+||.+|+++
T Consensus 28 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~l 107 (140)
T PF00179_consen 28 FEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSL 107 (140)
T ss_dssp TEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHH
T ss_pred heEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999985 599999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q psy15855 80 LSDPNPNSPANSMAAQLYKENRREYEKRVKACV 112 (118)
Q Consensus 80 l~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~ 112 (118)
|.+|+.++|+|.+|+++|++|+++|+++||+|.
T Consensus 108 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 108 LSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999999999999999999999999999973
No 9
>KOG0418|consensus
Probab=100.00 E-value=1.5e-40 Score=228.10 Aligned_cols=115 Identities=37% Similarity=0.765 Sum_probs=110.5
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceee-CCCcEEecCCCCCCCCCCCHHHHHHHHHHhhc
Q psy15855 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81 (118)
Q Consensus 3 W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~-~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~ 81 (118)
-++.|.||+|||||||+|.++|.+|++|||+||+|+|.|+||||||. .+|.||+|++++.|++++|+..+|++||++|.
T Consensus 38 ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~ 117 (200)
T KOG0418|consen 38 IKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLC 117 (200)
T ss_pred ceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 82 DPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 82 ~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
.|++.+|.+...|++|.++++.|.+.||.+....+.
T Consensus 118 ~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 118 APEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred CCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999877653
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.8e-39 Score=218.63 Aligned_cols=115 Identities=51% Similarity=0.994 Sum_probs=112.5
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC-CCCCCCCCHHHHHHHHHHh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-NRWSPTYDVSAILTSIQSL 79 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~-~~W~p~~~i~~vl~~i~~l 79 (118)
++|+++|.||++|+|+||+|++.|.||++||++||+|+|.++++||||+++|.||++++. ++|+|++++.++|.+|+++
T Consensus 29 ~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~ 108 (145)
T smart00212 29 LEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSL 108 (145)
T ss_pred heEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Q psy15855 80 LSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115 (118)
Q Consensus 80 l~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s 115 (118)
|.+|+.++|+|.+||++|+++++.|.++|++++.++
T Consensus 109 l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 109 LSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999876
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.4e-39 Score=219.16 Aligned_cols=112 Identities=53% Similarity=1.045 Sum_probs=109.0
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCC-CCCCCCHHHHHHHHHHh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNR-WSPTYDVSAILTSIQSL 79 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~-W~p~~~i~~vl~~i~~l 79 (118)
++|+++|.||++|+|+||+|+++|.||++||++||+|+|.++++||||+.+|.||++++... |+|++++.+||.+|+++
T Consensus 29 ~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~ 108 (141)
T cd00195 29 LEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSL 108 (141)
T ss_pred hEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999877 99999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q psy15855 80 LSDPNPNSPANSMAAQLYKENRREYEKRVKACV 112 (118)
Q Consensus 80 l~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~ 112 (118)
|.+|+.++|+|.+||.+|++|+++|+++|++++
T Consensus 109 l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 109 LNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred HhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999999999999999999999999874
No 12
>KOG0421|consensus
Probab=100.00 E-value=4.6e-39 Score=212.63 Aligned_cols=113 Identities=49% Similarity=0.897 Sum_probs=109.5
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
+.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|+.||||||-.|.||+|||++.|+..+++..||++||+||
T Consensus 59 f~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLL 138 (175)
T KOG0421|consen 59 FKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLL 138 (175)
T ss_pred eEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Q psy15855 81 SDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114 (118)
Q Consensus 81 ~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~ 114 (118)
-+||.++|+|..||+++. |.++|++.+.++-++
T Consensus 139 GEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 139 GEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred CCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999999999999999999 999999999887654
No 13
>KOG0426|consensus
Probab=100.00 E-value=1.7e-38 Score=207.40 Aligned_cols=116 Identities=44% Similarity=0.877 Sum_probs=112.3
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC-------------CCCCCCC
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-------------NRWSPTY 67 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~-------------~~W~p~~ 67 (118)
++|.|.|.||+||+|+||.|..++.||.+||.+||+++|...+|||||+.+|+||+++|. +.|+|.+
T Consensus 35 F~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ 114 (165)
T KOG0426|consen 35 FEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ 114 (165)
T ss_pred eeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHH
Confidence 589999999999999999999999999999999999999999999999999999999983 5799999
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 68 DVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 68 ~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
+++.||+++.++|.+||-++.+|.+|+.++++|+++|++.|+..+.++.
T Consensus 115 SvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 115 SVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999874
No 14
>KOG0416|consensus
Probab=100.00 E-value=2.5e-38 Score=214.08 Aligned_cols=116 Identities=40% Similarity=0.839 Sum_probs=111.1
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceee-CCCcEEecCCCCCCCCCCCHHHHHHH-HHHh
Q psy15855 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDILQNRWSPTYDVSAILTS-IQSL 79 (118)
Q Consensus 2 ~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~-~~g~icl~~l~~~W~p~~~i~~vl~~-i~~l 79 (118)
+.+|.+.||.||+|+||+++++|.+|++||++.|+|.|.++||||||+ .+|.||+|.++..|+|.+++..|+.. |-.|
T Consensus 31 ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQL 110 (189)
T KOG0416|consen 31 EFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQL 110 (189)
T ss_pred EEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHH
Confidence 578999999999999999999999999999999999999999999998 69999999999999999999999866 6788
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 80 LSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 80 l~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
|..||+.+|+|.+||.+|.++++.|+++|++|+++++.
T Consensus 111 L~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 111 LRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred hcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999875
No 15
>KOG0420|consensus
Probab=100.00 E-value=1.6e-37 Score=210.50 Aligned_cols=114 Identities=32% Similarity=0.729 Sum_probs=108.8
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhhc
Q psy15855 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81 (118)
Q Consensus 2 ~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~ 81 (118)
+.+.+|. |..+.|+||.|+|.+.+|+.||+.||+|+|+|+|||||||.+|.||++||+++|+|..+|.+|+.+|+.||.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~ 139 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFL 139 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhc
Confidence 3567777 888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 82 DPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 82 ~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
+|+++||+|.+||.++++|++.|..+||+.+....
T Consensus 140 epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 140 EPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999887654
No 16
>KOG0422|consensus
Probab=100.00 E-value=5.7e-36 Score=196.81 Aligned_cols=116 Identities=29% Similarity=0.752 Sum_probs=111.7
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC-CCCCCCCCHHHHHHHHHHh
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ-NRWSPTYDVSAILTSIQSL 79 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~-~~W~p~~~i~~vl~~i~~l 79 (118)
+.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.|.+|+.++. ++|.|+....+||++|..+
T Consensus 33 l~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~l 111 (153)
T KOG0422|consen 33 LKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIAL 111 (153)
T ss_pred eeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHH
Confidence 57999998 888999999999999999999999999999999999999999999999886 7899999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy15855 80 LSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117 (118)
Q Consensus 80 l~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~~ 117 (118)
+.+|+++.|++.++|..|.+|+..|.++|.+++++..+
T Consensus 112 iN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 112 INDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred hcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 99999999999999999999999999999999998754
No 17
>KOG0423|consensus
Probab=99.97 E-value=1.2e-31 Score=182.39 Aligned_cols=112 Identities=37% Similarity=0.769 Sum_probs=107.7
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhhcCC
Q psy15855 4 NAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDP 83 (118)
Q Consensus 4 ~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p 83 (118)
.+.|.||.||||++|.|+..+.+..|||.+||+-.|+|+||||||..+|.||.+.|+.+|+|..+|..||..|..||..|
T Consensus 43 qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~P 122 (223)
T KOG0423|consen 43 QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEP 122 (223)
T ss_pred HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Q psy15855 84 NPNSPANSMAAQLYKENRREYEKRVKACVEQS 115 (118)
Q Consensus 84 ~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s 115 (118)
++++.+|.+|.+++.++.++|.+++|-+.+-+
T Consensus 123 nPESALNEeAGkmLLEnYdeYa~rARl~TeIH 154 (223)
T KOG0423|consen 123 NPESALNEEAGKMLLENYDEYARRARLYTEIH 154 (223)
T ss_pred ChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999877643
No 18
>KOG0427|consensus
Probab=99.92 E-value=3.8e-25 Score=144.57 Aligned_cols=89 Identities=38% Similarity=0.780 Sum_probs=82.1
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeccc-ccceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKM-FHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 2 ~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HPnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
+|.+.+.|.+||.|+|.+|.+.+.||+.||+..|.|.|..++ .||+|++||.||+|+|.+.|+|++++.+|+++|.++|
T Consensus 45 qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSML 124 (161)
T KOG0427|consen 45 QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSML 124 (161)
T ss_pred eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999887 7999999999999999999999999999999999999
Q ss_pred cCC-CCCCccc
Q psy15855 81 SDP-NPNSPAN 90 (118)
Q Consensus 81 ~~p-~~~~p~n 90 (118)
+.- ....|.+
T Consensus 125 SSs~eKqrP~D 135 (161)
T KOG0427|consen 125 SSSKEKQRPTD 135 (161)
T ss_pred ccCccccCCCc
Confidence 843 3344443
No 19
>KOG0429|consensus
Probab=99.92 E-value=1.7e-24 Score=152.32 Aligned_cols=115 Identities=29% Similarity=0.584 Sum_probs=105.4
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCC--CCeeEEecccccceee-CCCcEEecCCCCCCCCCC-CHHHHHHHH
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNK--PPTVRFASKMFHPNVY-ADGGICLDILQNRWSPTY-DVSAILTSI 76 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~--pP~v~f~t~i~HPnv~-~~g~icl~~l~~~W~p~~-~i~~vl~~i 76 (118)
|.|.++|++.+| .|.||+|+|.|.+|++||.. .|+|.|.+.++||+|. .++.+|++-....|...- +|.+||..+
T Consensus 49 l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~yl 127 (258)
T KOG0429|consen 49 LLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYL 127 (258)
T ss_pred ceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHH
Confidence 689999999998 89999999999999999954 7999999999999998 589999987777798755 699999999
Q ss_pred HHhhcCCCCCCc--ccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 77 QSLLSDPNPNSP--ANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 77 ~~ll~~p~~~~p--~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
|.+|++|+.+.+ .|++|+.+|++++++|.++|++|++.|.
T Consensus 128 qriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr 169 (258)
T KOG0429|consen 128 QRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR 169 (258)
T ss_pred HHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999998766 5999999999999999999999999875
No 20
>KOG0894|consensus
Probab=99.89 E-value=2.8e-22 Score=140.68 Aligned_cols=83 Identities=33% Similarity=0.744 Sum_probs=73.2
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC---CCCCCCCCHHHHHHHHH
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ---NRWSPTYDVSAILTSIQ 77 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~---~~W~p~~~i~~vl~~i~ 77 (118)
|+||.+|.||+||||+||.|+.+|.||++||++||.|+..|+ +-.+--+.++||++.. +.|+|.+++++||.+|.
T Consensus 35 LEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLl 112 (244)
T KOG0894|consen 35 LEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLL 112 (244)
T ss_pred eeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecCceEEEeccccCcCcCCCcccHHHHHHHHH
Confidence 689999999999999999999999999999999999998875 2224457789999876 78999999999999999
Q ss_pred HhhcCCCC
Q psy15855 78 SLLSDPNP 85 (118)
Q Consensus 78 ~ll~~p~~ 85 (118)
++|.+-.+
T Consensus 113 SFM~e~~p 120 (244)
T KOG0894|consen 113 SFMTEDSP 120 (244)
T ss_pred HHHhcCCC
Confidence 99985443
No 21
>KOG0428|consensus
Probab=99.74 E-value=7.5e-18 Score=120.67 Aligned_cols=79 Identities=27% Similarity=0.641 Sum_probs=70.4
Q ss_pred CEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCC---CCCCCCCCHHHHHHHHH
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ---NRWSPTYDVSAILTSIQ 77 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~---~~W~p~~~i~~vl~~i~ 77 (118)
++||.+|.||.||-|+||+|+.+|.||.+||++||.+..+|+ +-.+.-+..||++|.. +.|.|+++|...|.+|.
T Consensus 40 FEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlI 117 (314)
T KOG0428|consen 40 FEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALI 117 (314)
T ss_pred eeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeCceEEEEecCCCccccCcchhHHHHHHHHH
Confidence 689999999999999999999999999999999999988874 2334567789999875 78999999999999999
Q ss_pred Hhhc
Q psy15855 78 SLLS 81 (118)
Q Consensus 78 ~ll~ 81 (118)
.+|-
T Consensus 118 gFmP 121 (314)
T KOG0428|consen 118 GFMP 121 (314)
T ss_pred cccc
Confidence 8885
No 22
>KOG0895|consensus
Probab=99.67 E-value=7.8e-17 Score=133.21 Aligned_cols=80 Identities=39% Similarity=0.849 Sum_probs=73.2
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeccc--ccceeeCCCcEEecCCC-------CCCCCCCCHHHHHH
Q psy15855 4 NAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKM--FHPNVYADGGICLDILQ-------NRWSPTYDVSAILT 74 (118)
Q Consensus 4 ~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i--~HPnv~~~g~icl~~l~-------~~W~p~~~i~~vl~ 74 (118)
+++|.||.||||..|.|.|++.||++||.+||.+...+.- ++||.+++|+||+++|. +-|+|+.++.+||.
T Consensus 884 ~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~ 963 (1101)
T KOG0895|consen 884 RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLV 963 (1101)
T ss_pred HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHH
Confidence 3678899999999999999999999999999999998764 79999999999999996 45999999999999
Q ss_pred HHHHhhcCC
Q psy15855 75 SIQSLLSDP 83 (118)
Q Consensus 75 ~i~~ll~~p 83 (118)
+||.|+.+.
T Consensus 964 s~q~l~l~~ 972 (1101)
T KOG0895|consen 964 SIQGLVLNE 972 (1101)
T ss_pred Hhhhhhccc
Confidence 999998743
No 23
>KOG0896|consensus
Probab=99.44 E-value=4.4e-13 Score=88.20 Aligned_cols=80 Identities=29% Similarity=0.614 Sum_probs=69.5
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceee-CCCcEEecCC--CCCCCCCCCHHHHHHHHHH
Q psy15855 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL--QNRWSPTYDVSAILTSIQS 78 (118)
Q Consensus 2 ~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~-~~g~icl~~l--~~~W~p~~~i~~vl~~i~~ 78 (118)
.|.+.|.||+.|+||+.+|.++|...++||..||.|+|.+++--+.|. .+|.|.-..+ ..+|.-.++++.+|..++.
T Consensus 40 rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 40 RWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRK 119 (138)
T ss_pred eeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhH
Confidence 699999999999999999999999999999999999999999888887 4555543211 3789999999999999987
Q ss_pred hhc
Q psy15855 79 LLS 81 (118)
Q Consensus 79 ll~ 81 (118)
++.
T Consensus 120 ~m~ 122 (138)
T KOG0896|consen 120 EMM 122 (138)
T ss_pred HHH
Confidence 664
No 24
>KOG0895|consensus
Probab=99.42 E-value=4.5e-13 Score=111.32 Aligned_cols=81 Identities=37% Similarity=0.879 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecc---cccceeeCCCcEEecCCC-------CCCCCC-CCHHH
Q psy15855 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK---MFHPNVYADGGICLDILQ-------NRWSPT-YDVSA 71 (118)
Q Consensus 3 W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~HPnv~~~g~icl~~l~-------~~W~p~-~~i~~ 71 (118)
-+++|.||.||||++|+|.|+|.||..||..||.+.+++. .+.||.+.+|+||+++|- +.|+|. .++.+
T Consensus 314 I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~q 393 (1101)
T KOG0895|consen 314 IKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQ 393 (1101)
T ss_pred eeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhh
Confidence 4689999999999999999999999999999999999987 479999999999999872 579998 78999
Q ss_pred HHHHHHHhhcCC
Q psy15855 72 ILTSIQSLLSDP 83 (118)
Q Consensus 72 vl~~i~~ll~~p 83 (118)
+|..||.++.+-
T Consensus 394 vL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 394 VLESIQGLILNE 405 (1101)
T ss_pred hhhhhhhhhccc
Confidence 999999998754
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.88 E-value=1.1e-08 Score=68.29 Aligned_cols=67 Identities=30% Similarity=0.657 Sum_probs=59.9
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeEEeccc---ccceeeCCCcEEe---cCCCCCCCCCCCHHHHHHHHHHhhcC
Q psy15855 16 EDGTFKLTVEFTEEYPNKPPTVRFASKM---FHPNVYADGGICL---DILQNRWSPTYDVSAILTSIQSLLSD 82 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPnv~~~g~icl---~~l~~~W~p~~~i~~vl~~i~~ll~~ 82 (118)
.|+.+.+.|.+|++||..||.|....+. +=|||+.+|.+|+ ...-+.|.|...+.++|.+...+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887554 6799999999999 66678999999999999999999873
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.69 E-value=3.2e-08 Score=65.13 Aligned_cols=68 Identities=22% Similarity=0.547 Sum_probs=50.2
Q ss_pred CCCCcEE--EEEEEeCCCCCCCCCeeEEecccc-----cceeeCCCcEEecCCCCCCCC-CCCHHHHHHHHHHhhcC
Q psy15855 14 PFEDGTF--KLTVEFTEEYPNKPPTVRFASKMF-----HPNVYADGGICLDILQNRWSP-TYDVSAILTSIQSLLSD 82 (118)
Q Consensus 14 ~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~i~-----HPnv~~~g~icl~~l~~~W~p-~~~i~~vl~~i~~ll~~ 82 (118)
.|+|..| .+.|.+|.+||.+||.+....... +.+||++|+|.++.| ++|++ ..+|.+++..+.+.|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhH
Confidence 4888888 678889999999999997765322 449999999999888 56777 78899999999988863
No 27
>KOG0897|consensus
Probab=98.64 E-value=7.1e-08 Score=62.08 Aligned_cols=89 Identities=25% Similarity=0.513 Sum_probs=63.1
Q ss_pred EEEEEeCCCCCCCCCeeEEecccc-cceeeCCCcEEecCCC-CCCCCCCCHHHHHHHHHHhhcCCC--CCCcccHHHHHH
Q psy15855 21 KLTVEFTEEYPNKPPTVRFASKMF-HPNVYADGGICLDILQ-NRWSPTYDVSAILTSIQSLLSDPN--PNSPANSMAAQL 96 (118)
Q Consensus 21 ~~~i~fp~~yP~~pP~v~f~t~i~-HPnv~~~g~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~--~~~p~n~~a~~~ 96 (118)
-+.+.|+++||+.||.++...++- .--|-.+|.||..++. +.|+.+++++.++++|...+..-. ...+++.+.. +
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~ 92 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-L 92 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-H
Confidence 456789999999999996554432 2234478999999886 689999999999999999988654 3455655443 5
Q ss_pred HH--HCHHHHHHHHHH
Q psy15855 97 YK--ENRREYEKRVKA 110 (118)
Q Consensus 97 ~~--~~~~~f~~~v~~ 110 (118)
|. .-.+.|+..++.
T Consensus 93 ~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 93 YSHSQAQQSFKSLVQI 108 (122)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 53 234555555543
No 28
>KOG2391|consensus
Probab=97.85 E-value=7e-05 Score=56.68 Aligned_cols=71 Identities=21% Similarity=0.522 Sum_probs=57.6
Q ss_pred CCCCCcEE--EEEEEeCCCCCCCCCeeEEecc-----cccceeeCCCcEEecCCCCCCCC-CCCHHHHHHHHHHhhcCCC
Q psy15855 13 TPFEDGTF--KLTVEFTEEYPNKPPTVRFASK-----MFHPNVYADGGICLDILQNRWSP-TYDVSAILTSIQSLLSDPN 84 (118)
Q Consensus 13 t~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~-----i~HPnv~~~g~icl~~l~~~W~p-~~~i~~vl~~i~~ll~~p~ 84 (118)
.+|.|.+| .+.|.+.+.||..||.+..... --|-+||.+|.|-|.+|. +|.+ +++|..+++.+.+.|.++.
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCC
Confidence 46899888 4778899999999999965432 138999999999999995 5765 7789999999988887544
No 29
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.48 E-value=0.044 Score=34.46 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCCCCCcEEEEEEEeCCCCCCCCCeeEEecc
Q psy15855 12 DTPFEDGTFKLTVEFTEEYPNKPPTVRFASK 42 (118)
Q Consensus 12 ~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 42 (118)
.+.-....+.+.+.||++||..+|.|...+.
T Consensus 43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 43 FESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp CTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3445567889999999999999999976654
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.37 E-value=0.022 Score=38.38 Aligned_cols=71 Identities=21% Similarity=0.474 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCCCCcE----------EEEEEEeCCCCCCCCCeeEEeccc-ccceeeCCCcEEecCC-CCCC---CCCC
Q psy15855 3 WNAVIFGPHDTPFEDGT----------FKLTVEFTEEYPNKPPTVRFASKM-FHPNVYADGGICLDIL-QNRW---SPTY 67 (118)
Q Consensus 3 W~~~i~gp~~t~y~gg~----------f~~~i~fp~~yP~~pP~v~f~t~i-~HPnv~~~g~icl~~l-~~~W---~p~~ 67 (118)
|.-+=.-+.||-|.|.+ |.+++.+|..||..||.|..-.-- --.-.+..|+||++.- ..-| .|.+
T Consensus 50 WF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~Pkf 129 (161)
T PF08694_consen 50 WFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKF 129 (161)
T ss_dssp -EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT-
T ss_pred eEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCch
Confidence 43333457777777765 456778899999999999642110 1223456899999753 2335 4667
Q ss_pred CHHHHH
Q psy15855 68 DVSAIL 73 (118)
Q Consensus 68 ~i~~vl 73 (118)
+|...+
T Consensus 130 GIaHal 135 (161)
T PF08694_consen 130 GIAHAL 135 (161)
T ss_dssp -HHHHH
T ss_pred hHHHHH
Confidence 776554
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.34 E-value=0.035 Score=38.28 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=46.7
Q ss_pred EEEEEeCCCCCCCCCeeEEecccc---cceeeCC-----CcEEecCCC-CCCCCCCCHHHHHHHHHHhhc
Q psy15855 21 KLTVEFTEEYPNKPPTVRFASKMF---HPNVYAD-----GGICLDILQ-NRWSPTYDVSAILTSIQSLLS 81 (118)
Q Consensus 21 ~~~i~fp~~yP~~pP~v~f~t~i~---HPnv~~~-----g~icl~~l~-~~W~p~~~i~~vl~~i~~ll~ 81 (118)
.+.|.|+.+||..+|.+.++-+.| +|++... ..+|+---. ..|.+..++..+|..|..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 467899999999999877665443 5777654 679984332 568999999999999987775
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.19 E-value=0.33 Score=32.01 Aligned_cols=68 Identities=21% Similarity=0.468 Sum_probs=45.0
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecccccceeeCC-CcE--EecCC--------------CCCCCCCC-CHHH
Q psy15855 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYAD-GGI--CLDIL--------------QNRWSPTY-DVSA 71 (118)
Q Consensus 10 p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~-g~i--cl~~l--------------~~~W~p~~-~i~~ 71 (118)
|.| .|.+..=.+-|.+|+.||..+|.+-+..+-... .+ |.+ |-+.. ...|+|.. +|.+
T Consensus 35 P~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~---~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T 110 (122)
T PF14462_consen 35 PEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKL---ADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWT 110 (122)
T ss_pred CCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEc---cCCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHH
Confidence 444 699999999999999999999877554432211 12 222 32211 24588876 5888
Q ss_pred HHHHHHHhhc
Q psy15855 72 ILTSIQSLLS 81 (118)
Q Consensus 72 vl~~i~~ll~ 81 (118)
.|..|...|.
T Consensus 111 ~l~~v~~~L~ 120 (122)
T PF14462_consen 111 HLARVEHALA 120 (122)
T ss_pred HHHHHHHHHh
Confidence 8888877663
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.07 E-value=0.072 Score=33.22 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=21.1
Q ss_pred CcEEEEEEEeCCCCCCCCCeeEEec
Q psy15855 17 DGTFKLTVEFTEEYPNKPPTVRFAS 41 (118)
Q Consensus 17 gg~f~~~i~fp~~yP~~pP~v~f~t 41 (118)
...+.+.+.+|++||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3458899999999999999997654
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=89.26 E-value=0.57 Score=32.55 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=27.5
Q ss_pred eccccc---ceeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCc
Q psy15855 40 ASKMFH---PNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSP 88 (118)
Q Consensus 40 ~t~i~H---Pnv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p 88 (118)
.|++|| +||..+|.||..... .|.......+..+...|.+....++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 456777 599999999987543 3444434445565555443333333
No 35
>KOG3357|consensus
Probab=82.79 E-value=3.2 Score=27.73 Aligned_cols=69 Identities=17% Similarity=0.486 Sum_probs=42.3
Q ss_pred EEEEEeCCCCCCCCCcE----------EEEEEEeCCCCCCCCCeeEEecccc--cceeeCCCcEEec-CCCCCCCC---C
Q psy15855 3 WNAVIFGPHDTPFEDGT----------FKLTVEFTEEYPNKPPTVRFASKMF--HPNVYADGGICLD-ILQNRWSP---T 66 (118)
Q Consensus 3 W~~~i~gp~~t~y~gg~----------f~~~i~fp~~yP~~pP~v~f~t~i~--HPnv~~~g~icl~-~l~~~W~p---~ 66 (118)
|.-.-..++||-|-|.+ |-+++.+|-.||...|.+..- .+- .--.+..|.||+. .++.-|.. .
T Consensus 53 wfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp-eldgktakmyrggkiclt~hfkplwarn~pk 131 (167)
T KOG3357|consen 53 WFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP-ELDGKTAKMYRGGKICLTDHFKPLWARNVPK 131 (167)
T ss_pred ceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc-ccCchhhhhhcCceEeeccccchhhhhcCcc
Confidence 44344567888888864 445666889999999998531 111 1123457999984 45556754 4
Q ss_pred CCHHHH
Q psy15855 67 YDVSAI 72 (118)
Q Consensus 67 ~~i~~v 72 (118)
.+|...
T Consensus 132 fgiaha 137 (167)
T KOG3357|consen 132 FGIAHA 137 (167)
T ss_pred hhHHHH
Confidence 444433
No 36
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=76.67 E-value=10 Score=29.19 Aligned_cols=57 Identities=26% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCeeEEe-cccccceeeCCCcEEecCCCCCCCCCCC--HHHHHHHH
Q psy15855 14 PFEDGTFKLTVEFTEEYPNKPPTVRFA-SKMFHPNVYADGGICLDILQNRWSPTYD--VSAILTSI 76 (118)
Q Consensus 14 ~y~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPnv~~~g~icl~~l~~~W~p~~~--i~~vl~~i 76 (118)
||.|-..+-+|.|...+|..||.+.|. ..-|+|-.. . +..+ .+|++.-. +..++..|
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 577888888999999999999999996 334777321 1 1122 46876542 44444444
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=76.56 E-value=4.2 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=27.6
Q ss_pred ccccc---ceeeCCCcEEecCCCCCCCCCC-CHHHHHHHHHHhhcCCCC
Q psy15855 41 SKMFH---PNVYADGGICLDILQNRWSPTY-DVSAILTSIQSLLSDPNP 85 (118)
Q Consensus 41 t~i~H---Pnv~~~g~icl~~l~~~W~p~~-~i~~vl~~i~~ll~~p~~ 85 (118)
|++|| .||+++|+||+...+ .|.. ++.+ +......|.+-..
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~F 175 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRF 175 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcc
Confidence 45666 389999999997653 5544 5566 7777777665443
No 38
>KOG4018|consensus
Probab=72.51 E-value=3.7 Score=29.60 Aligned_cols=19 Identities=37% Similarity=0.845 Sum_probs=18.1
Q ss_pred EEEEEEEeCCCCCCCCCee
Q psy15855 19 TFKLTVEFTEEYPNKPPTV 37 (118)
Q Consensus 19 ~f~~~i~fp~~yP~~pP~v 37 (118)
.+.+.+.++++||..+|-+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred cEEEEEEccCCCCCCCcce
Confidence 7889999999999999999
No 39
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=72.21 E-value=2.2 Score=32.11 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=32.6
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEecccccceeeCCCcEEecCCCCCCCC-CCCHHHHHHHHHHhh
Q psy15855 18 GTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQNRWSP-TYDVSAILTSIQSLL 80 (118)
Q Consensus 18 g~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~g~icl~~l~~~W~p-~~~i~~vl~~i~~ll 80 (118)
....++|.++.+||.++|.+...-++ .+...|.+ ..++.+++...+..+
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHHHHHHH
Confidence 56778999999999999976322111 11236888 778888777766554
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=62.85 E-value=13 Score=24.89 Aligned_cols=25 Identities=28% Similarity=0.749 Sum_probs=22.2
Q ss_pred CcEEEEEEEeCCCCC-CCCCeeEEec
Q psy15855 17 DGTFKLTVEFTEEYP-NKPPTVRFAS 41 (118)
Q Consensus 17 gg~f~~~i~fp~~yP-~~pP~v~f~t 41 (118)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 589999999999999 9999997763
No 41
>KOG0309|consensus
Probab=61.60 E-value=18 Score=31.22 Aligned_cols=35 Identities=29% Similarity=0.673 Sum_probs=25.8
Q ss_pred EEeCCCCCCCCCcEE-EEEEEeCCCCCCC-CCeeEEec
Q psy15855 6 VIFGPHDTPFEDGTF-KLTVEFTEEYPNK-PPTVRFAS 41 (118)
Q Consensus 6 ~i~gp~~t~y~gg~f-~~~i~fp~~yP~~-pP~v~f~t 41 (118)
.+-||-- +-.|-+| ++.|.||.+||.+ +|+++|..
T Consensus 454 sln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 454 SLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred EecCCCC-ccccceeEEEEEeccccCCCCCCCceEEec
Confidence 3444433 3456666 8999999999998 79999874
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=59.51 E-value=15 Score=25.83 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeEEec
Q psy15855 16 EDGTFKLTVEFTEEYPNKPPTVRFAS 41 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP~~pP~v~f~t 41 (118)
+.|.|.|+=.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45889999999999999999998864
No 43
>KOG0177|consensus
Probab=59.38 E-value=2.5 Score=29.93 Aligned_cols=62 Identities=13% Similarity=0.296 Sum_probs=38.8
Q ss_pred EEEEEEeCCCCCCCCCeeEEeccc--ccc--e--eeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhhc
Q psy15855 20 FKLTVEFTEEYPNKPPTVRFASKM--FHP--N--VYADGGICLDILQNRWSPTYDVSAILTSIQSLLS 81 (118)
Q Consensus 20 f~~~i~fp~~yP~~pP~v~f~t~i--~HP--n--v~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~ 81 (118)
|++.+.+---=|.+-|...+..-. -++ . -.-.+..|++++...|+|.+|+++.+.-++.++.
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 455555543335566777665432 111 1 1124568999999999999999888776665543
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.45 E-value=26 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=21.9
Q ss_pred CcEEEEEEEeCCCCC-----CCCCeeEEec
Q psy15855 17 DGTFKLTVEFTEEYP-----NKPPTVRFAS 41 (118)
Q Consensus 17 gg~f~~~i~fp~~yP-----~~pP~v~f~t 41 (118)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 588999999999999 8999998764
No 45
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=43.47 E-value=75 Score=19.30 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecc
Q psy15855 2 IWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK 42 (118)
Q Consensus 2 ~W~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 42 (118)
+|.+-|.|+.+..-..-+=++...+.+.|+. |...+..+
T Consensus 3 ~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 3 KWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred EEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 6999999998875556667889999999865 66655544
No 46
>KOG0662|consensus
Probab=43.07 E-value=24 Score=25.44 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCeeEEecccccceee--CCCcEEecCCCCCC--CCCCCHHHHHHHHHHhhcCCCCCC
Q psy15855 32 NKPPTVRFASKMFHPNVY--ADGGICLDILQNRW--SPTYDVSAILTSIQSLLSDPNPNS 87 (118)
Q Consensus 32 ~~pP~v~f~t~i~HPnv~--~~g~icl~~l~~~W--~p~~~i~~vl~~i~~ll~~p~~~~ 87 (118)
..||.|-|-.+.|.-.|| +-|-|--.+.+..| -|..++.+-|..|..++-.|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 469999999999998887 45544334444455 578889999999988888776543
No 47
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=42.39 E-value=52 Score=20.10 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 92 MAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 92 ~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
+...++++|+++|++..++.+++-+
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~I 32 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEMI 32 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4567889999999999888777543
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.79 E-value=66 Score=19.96 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.8
Q ss_pred CCCcEEEEEEEeCCCCCCCCCeeEEecc
Q psy15855 15 FEDGTFKLTVEFTEEYPNKPPTVRFASK 42 (118)
Q Consensus 15 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 42 (118)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46888899988899999 599998864
No 49
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=41.52 E-value=70 Score=22.12 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=22.9
Q ss_pred EEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEecc
Q psy15855 6 VIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK 42 (118)
Q Consensus 6 ~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 42 (118)
+|+++++--=.--...++|.|. ||=..||+|.|+.+
T Consensus 41 ~iF~~~kvaP~~~~~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 41 VIFAAPKVAPRSIGLRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred EEeeCCccCccccceEEEEecc-ccCcCCCceEEecc
Confidence 3444444222222346677776 89999999999876
No 50
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=40.19 E-value=44 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 88 PANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 88 p~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
=.+.+++..|.++++.|.+.+.+.++++.
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 36788999999999999999999988764
No 51
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.13 E-value=43 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=20.2
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEec
Q psy15855 18 GTFKLTVEFTEEYPNKPPTVRFAS 41 (118)
Q Consensus 18 g~f~~~i~fp~~yP~~pP~v~f~t 41 (118)
-.|-+.|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 346677889999999999999875
No 52
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=39.05 E-value=1.2e+02 Score=21.54 Aligned_cols=64 Identities=16% Similarity=0.354 Sum_probs=40.0
Q ss_pred eCCCcEEecCCC---CCC-CCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 49 YADGGICLDILQ---NRW-SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 49 ~~~g~icl~~l~---~~W-~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.-.|++++|+.. ..+ .+.+++..|...+- .. ...+---.++..+|..+++...+.++.|++.+.
T Consensus 147 ~i~GR~~iD~~~~~~~~~kl~sy~L~~Va~~~L---g~-~k~d~~~~~i~~~~~~~~~~~~~l~~Y~~~Da~ 214 (230)
T cd05777 147 NIEGRIQFDLLQVIQRDYKLRSYSLNSVSAHFL---GE-QKEDVHYSIITDLQNGNPETRRRLAVYCLKDAY 214 (230)
T ss_pred EEcCEEeeeHHHHHHHhcCcccCcHHHHHHHHh---CC-CCCCCCHHHHHHHHccCHhHhHHHHHhhHHHHH
Confidence 446899888764 222 45677777665443 22 222211246677888888888888888887653
No 53
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=38.90 E-value=52 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 91 SMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 91 ~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.|+.++.++|+++|.++|++++.+..
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 45667778999999999999988764
No 54
>KOG4445|consensus
Probab=38.48 E-value=42 Score=25.80 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.3
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEecc
Q psy15855 18 GTFKLTVEFTEEYPNKPPTVRFASK 42 (118)
Q Consensus 18 g~f~~~i~fp~~yP~~pP~v~f~t~ 42 (118)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999987653
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=37.52 E-value=53 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCcEEEEEEEeCCCCCC-----CCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYPN-----KPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 40 (118)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35789999999999998 78888665
No 56
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=37.49 E-value=38 Score=19.28 Aligned_cols=18 Identities=17% Similarity=0.617 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHHHHHHHh
Q psy15855 62 RWSPTYDVSAILTSIQSL 79 (118)
Q Consensus 62 ~W~p~~~i~~vl~~i~~l 79 (118)
+|.|.++|.+++.....-
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 799999999999876654
No 57
>PRK05414 urocanate hydratase; Provisional
Probab=36.28 E-value=56 Score=26.88 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 91 SMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 91 ~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.|+..+.++|++.|.++|++++.+..
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777788999999999999988764
No 58
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.35 E-value=61 Score=22.79 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=19.6
Q ss_pred CcEEEEEEEeCCCCCC-----CCCeeEEe
Q psy15855 17 DGTFKLTVEFTEEYPN-----KPPTVRFA 40 (118)
Q Consensus 17 gg~f~~~i~fp~~yP~-----~pP~v~f~ 40 (118)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999995 78877554
No 59
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=35.31 E-value=60 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 91 SMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 91 ~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.|+..+.++|+++|.++|++++.+..
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56667778899999999999988764
No 60
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=30.44 E-value=20 Score=17.88 Aligned_cols=15 Identities=27% Similarity=0.893 Sum_probs=8.8
Q ss_pred cccceeeCCCc-EEec
Q psy15855 43 MFHPNVYADGG-ICLD 57 (118)
Q Consensus 43 i~HPnv~~~g~-icl~ 57 (118)
-|||.+..+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999987776 4543
No 61
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=29.52 E-value=99 Score=23.87 Aligned_cols=39 Identities=28% Similarity=0.699 Sum_probs=28.3
Q ss_pred EEEEEEeCCCCC-CCCCcEEEEEEE---eCCCCCCCCCeeEEec
Q psy15855 2 IWNAVIFGPHDT-PFEDGTFKLTVE---FTEEYPNKPPTVRFAS 41 (118)
Q Consensus 2 ~W~~~i~gp~~t-~y~gg~f~~~i~---fp~~yP~~pP~v~f~t 41 (118)
.|++.+.|-+++ -|++|.+++.+. |-.-+ .+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 478889997776 888999988776 33333 4567999853
No 62
>PF15572 Imm26: Immunity protein 26
Probab=28.06 E-value=66 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=18.9
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCCCCeeEEe
Q psy15855 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFA 40 (118)
Q Consensus 10 p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~ 40 (118)
+.+..+.|.+|++ |..||.. +.|.|+
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 4556788888876 4559998 777776
No 63
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=26.60 E-value=97 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=20.7
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYP------------------NKPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 40 (118)
+.|.|.|+=..|.-|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3688999999999997 678888775
No 64
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=24.98 E-value=2.5e+02 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy15855 91 SMAAQLYKENRREYEKRVKACVEQSF 116 (118)
Q Consensus 91 ~~a~~~~~~~~~~f~~~v~~~~~~s~ 116 (118)
.++..+-.+|+++|.+.|++.+++..
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv 307 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHV 307 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 45667778899999999999888764
No 65
>KOG1047|consensus
Probab=24.65 E-value=84 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEEEeCCCCCCC---CCeeEEecc
Q psy15855 13 TPFEDGTFKLTVEFTEEYPNK---PPTVRFASK 42 (118)
Q Consensus 13 t~y~gg~f~~~i~fp~~yP~~---pP~v~f~t~ 42 (118)
+||.=|.|-+ +.+|++||+. -|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4688888877 4678899987 699999986
No 66
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.62 E-value=83 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=16.3
Q ss_pred CEEEEEEeCCCCCCCCCcEEEE
Q psy15855 1 MIWNAVIFGPHDTPFEDGTFKL 22 (118)
Q Consensus 1 ~~W~~~i~gp~~t~y~gg~f~~ 22 (118)
.+|.|.|=| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 379999987 44899999976
No 67
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=24.49 E-value=1.1e+02 Score=22.97 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=20.8
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYP------------------NKPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 40 (118)
+.|.|.|.=..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3688999999999998 478888775
No 68
>KOG2851|consensus
Probab=23.78 E-value=2.3e+02 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCcEEecCCC---CCCCCCC--CHHHHHHHHHHh
Q psy15855 50 ADGGICLDILQ---NRWSPTY--DVSAILTSIQSL 79 (118)
Q Consensus 50 ~~g~icl~~l~---~~W~p~~--~i~~vl~~i~~l 79 (118)
.+|+||.++-- +...|.. +|.+++..|.++
T Consensus 335 ~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 335 KTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred CCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 69999986642 4566644 799999999988
No 69
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=22.87 E-value=52 Score=22.43 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=5.8
Q ss_pred EEEeCCCCC
Q psy15855 5 AVIFGPHDT 13 (118)
Q Consensus 5 ~~i~gp~~t 13 (118)
.+|.||+||
T Consensus 20 ~~i~GpPGT 28 (236)
T PF13086_consen 20 TLIQGPPGT 28 (236)
T ss_dssp EEEE-STTS
T ss_pred EEEECCCCC
Confidence 567788886
No 70
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=22.02 E-value=1.4e+02 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.516 Sum_probs=19.9
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYP------------------NKPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 40 (118)
+.|.|.|.=..|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3688999999998887 577888775
No 71
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.93 E-value=1.4e+02 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=20.3
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYP------------------NKPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 40 (118)
+.|.|.|+=..|.-|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3688999999999996 567888765
No 72
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=21.91 E-value=2.2e+02 Score=19.61 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=35.2
Q ss_pred CCCcEEecCCC---CCCC-CCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Q psy15855 50 ADGGICLDILQ---NRWS-PTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115 (118)
Q Consensus 50 ~~g~icl~~l~---~~W~-p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~v~~~~~~s 115 (118)
-.|++++|++. ..|+ +.+++..|...+. ..+.. +--..++.++|+++. ...+.++.+++.+
T Consensus 121 i~Gr~~lDl~~~~~~~~~l~sy~L~~v~~~~L---g~~k~-d~~~~~i~~~~~~~~-~~~~l~~Y~~~D~ 185 (195)
T cd05780 121 IKGRIHVDLYPVARRTLNLTRYTLERVYEELF---GIEKE-DVPGEEIAEAWDSGE-NLERLFRYSMEDA 185 (195)
T ss_pred cCCeEEEeHHHHHHhhCCCCcCcHHHHHHHHh---CCCCC-cCCHHHHHHHHhCCC-chHHHHHHhHHHH
Confidence 46889988753 3343 4667776655433 33322 223356777887664 5556666666554
No 73
>KOG3696|consensus
Probab=21.81 E-value=87 Score=24.11 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.8
Q ss_pred CCCCCCCeeEEecccccceeeCCCcE
Q psy15855 29 EYPNKPPTVRFASKMFHPNVYADGGI 54 (118)
Q Consensus 29 ~yP~~pP~v~f~t~i~HPnv~~~g~i 54 (118)
+=+..-|+|.|.-.+|||||-..-+.
T Consensus 304 gs~eds~rvV~~V~lwhpevq~~~r~ 329 (334)
T KOG3696|consen 304 GSSEDSPRVVFTVDLWHPEVQPAERQ 329 (334)
T ss_pred CCcccCceEEEEEeccCccccccccc
Confidence 33455799999999999999755443
No 74
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.57 E-value=1.4e+02 Score=21.57 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=20.7
Q ss_pred CCcEEEEEEEeCCCCCC-------CCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYPN-------KPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP~-------~pP~v~f~ 40 (118)
+.|.|.|.=..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 36899999999999964 78998774
No 75
>PRK14052 effector protein; Provisional
Probab=21.30 E-value=22 Score=27.52 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=19.3
Q ss_pred ccceeeCCCcEEe------cCCCCCCCC-CCCHHHHHH
Q psy15855 44 FHPNVYADGGICL------DILQNRWSP-TYDVSAILT 74 (118)
Q Consensus 44 ~HPnv~~~g~icl------~~l~~~W~p-~~~i~~vl~ 74 (118)
.||-+|.||++-- .+-.+.|+| +++-+..|.
T Consensus 347 IHPFlDGNGRtGRLLInLi~lrn~~~~pl~~~~e~~l~ 384 (387)
T PRK14052 347 YHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENSLH 384 (387)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcCCcCccccchhhhhc
Confidence 7999999998631 222366777 344444443
No 76
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.10 E-value=1.6e+02 Score=22.00 Aligned_cols=30 Identities=10% Similarity=0.360 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEEEEeCCCCCCCC--CeeEEec
Q psy15855 12 DTPFEDGTFKLTVEFTEEYPNKP--PTVRFAS 41 (118)
Q Consensus 12 ~t~y~gg~f~~~i~fp~~yP~~p--P~v~f~t 41 (118)
.+.+.|..|++-|..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 35789999999999999999887 9998874
No 77
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=1.6e+02 Score=20.23 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=23.9
Q ss_pred eeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhh
Q psy15855 48 VYADGGICLDILQNRWSPTYDVSAILTSIQSLL 80 (118)
Q Consensus 48 v~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll 80 (118)
|+++|.|..-. ..+++.-+...++..|..+.
T Consensus 126 Id~dG~I~~~~--~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 126 IDPDGKIRYVW--RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred ECCCCeEEEEe--cCCCCcccHHHHHHHHHHhc
Confidence 67888887643 66788888999998887653
No 78
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.62 E-value=33 Score=29.61 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCCCeeEEecccc
Q psy15855 21 KLTVEFTEEYPNKPPTVRFASKMF 44 (118)
Q Consensus 21 ~~~i~fp~~yP~~pP~v~f~t~i~ 44 (118)
.++|.+|.+||..+|.+.+.+.-|
T Consensus 717 Pl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 717 PLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ------------------------
T ss_pred CeeEeCCCCCCccCCcCcccHHHh
Confidence 467889999999999987755443
No 79
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=20.51 E-value=1.8e+02 Score=16.43 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHCHHHHHHHHHH
Q psy15855 88 PANSMAAQLYKENRREYEKRVKA 110 (118)
Q Consensus 88 p~n~~a~~~~~~~~~~f~~~v~~ 110 (118)
.-|++.+.+..+|++.|.+...+
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLNE 55 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHHS
T ss_pred ccCHHHHHHHHHCHHHHHHHHcC
Confidence 36888999999999999887643
No 80
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=20.30 E-value=1.5e+02 Score=17.42 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred eeeCCCcEEecCCCCCCCCCCCHHHHHHHHHHhhcC
Q psy15855 47 NVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSD 82 (118)
Q Consensus 47 nv~~~g~icl~~l~~~W~p~~~i~~vl~~i~~ll~~ 82 (118)
-|+.+|.|-++.+-.-=-..+|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 367899999987744344567888887777776655
No 81
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.26 E-value=1.6e+02 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=20.9
Q ss_pred CCcEEEEEEEeCCCCCC-------CCCeeEEe
Q psy15855 16 EDGTFKLTVEFTEEYPN-------KPPTVRFA 40 (118)
Q Consensus 16 ~gg~f~~~i~fp~~yP~-------~pP~v~f~ 40 (118)
+.|.|.|.=..|--||. .||.|.|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 36899999999999975 78998774
Done!