RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15855
(118 letters)
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 215 bits (550), Expect = 8e-74
Identities = 82/118 (69%), Positives = 101/118 (85%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M+WNA+I GP DTP+EDGTF+L +EF EEYPNKPP V+F S+MFHPNVYA+G ICLDILQ
Sbjct: 34 MVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
NRW+PTYDV++ILTSIQSL +DPNP SPAN AA L+K+++ +Y KRVK VE+S+ D
Sbjct: 94 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 214 bits (546), Expect = 2e-73
Identities = 86/115 (74%), Positives = 104/115 (90%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M+WNAVIFGP DTP++ GTFKL+++F+E+YPNKPPTVRF S+MFHPN+YADG ICLDILQ
Sbjct: 34 MLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
N+WSP YDV+AILTSIQSLL DPNPNSPANS AA++Y E++REY +RV+ VEQS
Sbjct: 94 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 202 bits (517), Expect = 9e-69
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
M W I G T +E G +KLT+ F EEYP +PP RF +FHPNVY G +CL IL
Sbjct: 45 MNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN 104
Query: 60 -QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
+ W P + IL IQ LL DPN SPA + A ++K+++ EYEKRV+A ++
Sbjct: 105 EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 161
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 202 bits (515), Expect = 1e-68
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A + GP DT +E +KLT+EF +YP KPP V+F + +HPNV G ICLDIL+
Sbjct: 39 FKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK 98
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
W+ +YDV IL S+QSLL +PN SP N+ AA ++ N+ EY+K + + +
Sbjct: 99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTA 152
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 201 bits (514), Expect = 2e-68
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I G T + G + +TVE+ EYP+KPP V+F + +HPNVY G ICL IL
Sbjct: 39 QKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILN 98
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + I+ +Q LL PNPNSPA A + + N+ EY+K+V +Q
Sbjct: 99 EDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQ 154
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 201 bits (514), Expect = 2e-68
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G +CL IL+
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 --NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + IL IQ LL++PN SPA + A +Y +NR EYEKRV+A ++
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 199 bits (509), Expect = 8e-68
Identities = 48/114 (42%), Positives = 74/114 (64%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I GP ++P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+
Sbjct: 34 FHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP +S +L SI SLL DPNP+ P A++YK +R Y + + ++
Sbjct: 94 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 198 bits (506), Expect = 4e-67
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+
Sbjct: 49 FHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 108
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 109 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 198 bits (505), Expect = 6e-67
Identities = 50/114 (43%), Positives = 72/114 (63%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I GP D+P+ G F L + F +YP KPP V F +K++HPN+ + G ICLDIL+
Sbjct: 51 FHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK 110
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP +S +L SI SLL+DPNP+ P A LYK +R Y++ + ++
Sbjct: 111 DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQK 164
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 197 bits (502), Expect = 1e-66
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
I GP TP+ G F++ + +++P PP F +K+FHPNV A+G IC+++L+
Sbjct: 43 TDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK 102
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+ + +L +I+ LL PNP S N A +L EN EY R + E
Sbjct: 103 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 156
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 196 bits (500), Expect = 3e-66
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
IW+ +I GP DTP+ DG F +EF ++YP PP + F + HPN+Y +G +C+ IL
Sbjct: 35 FIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILH 94
Query: 60 ------------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKR 107
+ RWSP V IL S+ S+LS+PN S AN A L+++NR E+E++
Sbjct: 95 SPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQ 154
Query: 108 VKACVEQSF 116
VK + +S
Sbjct: 155 VKLSILKSL 163
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 197 bits (502), Expect = 3e-66
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W I G T +ED +KL++EF YP PTV+F + +HPNV G I LDIL+
Sbjct: 60 FKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK 119
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
+WS YDV IL SIQSLL +PN +SP N+ AA+L+K N ++K ++ +
Sbjct: 120 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQ 173
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 195 bits (498), Expect = 7e-66
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A+I GP DT FE G F + F +YP PP +RF +MFHPN+Y DG +C+ IL
Sbjct: 34 FEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 93
Query: 61 -------------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKR 107
RWSP V IL S+ S+L++PN S AN A+++++++R ++ K
Sbjct: 94 APGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKI 153
Query: 108 VKACVEQSF 116
K V++S
Sbjct: 154 AKQIVQKSL 162
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 194 bits (494), Expect = 2e-65
Identities = 51/114 (44%), Positives = 71/114 (62%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+
Sbjct: 35 RYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK 94
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 95 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 148
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 193 bits (493), Expect = 2e-65
Identities = 47/114 (41%), Positives = 74/114 (64%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+N +I GP TP+E GT+KL + E+YP +PP VRF +K++HPN+ G ICLDIL+
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK 90
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP + +L SIQ+LLS P P+ P +S A+ +K+++ + E + +
Sbjct: 91 DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 194 bits (495), Expect = 4e-65
Identities = 46/114 (40%), Positives = 67/114 (58%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W + I GP + +E G F L + FT EYP KPP V F ++++H N+ + G ICLDIL+
Sbjct: 78 YEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK 137
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+ WSP +S +L SI SLL+D NP P A Y NR E+++ + ++
Sbjct: 138 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 192 bits (491), Expect = 5e-65
Identities = 41/114 (35%), Positives = 68/114 (59%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ I GP +P+EDG F+L + ++YP + P VRF +K++HPN+ G ICLD+L+
Sbjct: 35 RYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK 94
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP + +L SIQ+LL+ PNPN P + A+ + +N + + + + +
Sbjct: 95 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 148
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 191 bits (488), Expect = 2e-64
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYA-DGGICLDIL 59
M W I G ++ ++ F+LT+ FT EY PP V+F + FHPNV G C+D L
Sbjct: 53 MEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL 112
Query: 60 QN--RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACV 112
N +W+ Y +S+IL ++Q +LS+P +P N AA++ ++ Y ++
Sbjct: 113 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFN 167
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 189 bits (483), Expect = 1e-63
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL 59
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ G ICLDIL
Sbjct: 41 TELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 100
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+++W+ + +L S+Q+LL+ P+ P +++ A YK+N +++ +
Sbjct: 101 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 155
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 188 bits (479), Expect = 8e-63
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W IFGP +T +E G FK ++F +YP PP RF +KM+HPN+Y G +C+ IL
Sbjct: 38 YNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILH 97
Query: 61 -------------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR------ 101
RW+PT +V IL S+ SLL++PN SPAN A+ +Y++ +
Sbjct: 98 PPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKD 157
Query: 102 REYEKRVKACVEQSFID 118
REY ++ V + +D
Sbjct: 158 REYTDIIRKQVLGTKVD 174
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 186 bits (475), Expect = 2e-62
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
A I G +TP+E G FKL V E YP +PP +RF + ++HPN+ + G ICLD+L
Sbjct: 34 DDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 93
Query: 60 ---QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+ W P+ +++ +LTSIQ L+S+PNP+ P + + +K N+ + K + E+
Sbjct: 94 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 187 bits (477), Expect = 5e-62
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDIL 59
W I GP TP+E G F L + +YP PP ++F +K++HPN+ + G ICLD+L
Sbjct: 53 FEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVL 112
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+N WSP + L SIQ+LLSDP P+ P ++ A++YKEN + K +
Sbjct: 113 KNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKT 167
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 186 bits (474), Expect = 6e-62
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDIL 59
W I GP TP+E G F L + +YP PP ++F +K++HPN+ + G ICLDIL
Sbjct: 75 HRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDIL 134
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++ WSP + L SIQ++L+DP P P ++ A++ EN + + K E
Sbjct: 135 KHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 189
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 186 bits (473), Expect = 7e-62
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ + VI P + ++ G F + + + YP+ PP V+ + ++HPN+ +G + L+IL+
Sbjct: 55 LNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR 113
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
W P +++I+ +Q L +PNP P N AA++ + NRR +E+ V+ + +I
Sbjct: 114 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 184 bits (470), Expect = 7e-62
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL 59
GP TP+E G F + +E EYP KPP ++F +K++HPN+ G ICLDIL
Sbjct: 32 HHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL 91
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+N WSP + + L S+Q+LL P PN P ++ AQ Y +R + K
Sbjct: 92 KNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 184 bits (470), Expect = 9e-62
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ + VI P + ++ G F + + + YP+ PP V+ + ++HPN+ +G +CL+IL+
Sbjct: 35 LNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR 93
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
W P +++I+ +Q L +PNP P N AA++ + NRR +E+ V+ + +I
Sbjct: 94 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 151
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 184 bits (470), Expect = 1e-61
Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 14/125 (11%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
W +I GP DT +E G FK + F ++YP +PP ++F ++++HPNV +G +C+ IL
Sbjct: 48 YRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILH 107
Query: 60 ------------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRR-EYEK 106
+ RW P + V I+ S+ S+L+DPN +SPAN AA+ ++E+R E+++
Sbjct: 108 EPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKR 167
Query: 107 RVKAC 111
+V C
Sbjct: 168 KVARC 172
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 184 bits (469), Expect = 2e-61
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDILQN 61
+ +GP TP+E G +K+ V+ ++YP K P++ F +K+FHPN+ A G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 62 RWSPTYDVSAILTS-IQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+ YD++ I S + LL+ PNP P N AA +Y EY++++K +++
Sbjct: 113 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 166
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 185 bits (471), Expect = 2e-61
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL 59
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ G ICLDIL
Sbjct: 38 TELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 97
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+++W+ + +L S+Q+LL+ P+ P +++ A YK+N +++ +
Sbjct: 98 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 152
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 183 bits (466), Expect = 3e-61
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDIL 59
++ + GP+ T +E G +K+ V ++YP P++ F +K+ HPNV A G +CLD++
Sbjct: 29 QDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVI 88
Query: 60 QNRWSPTYDVSAIL-TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+P Y + + + LL+ PNP+ P NS AA L +++ YE++VK V+
Sbjct: 89 NQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKL 144
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 184 bits (468), Expect = 5e-61
Identities = 41/118 (34%), Positives = 64/118 (54%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
VI P + + G+ ++F E YP +PP V K+FHPN+ G +CL+IL+
Sbjct: 63 SPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR 122
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
WSP D+ +I+T + L +PNPN P N AA+L E +E+ + V+ + I+
Sbjct: 123 EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 180
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 183 bits (466), Expect = 2e-60
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL 59
GP TP+E G F + +E EYP KPP ++F +K++HPN+ G ICLDIL
Sbjct: 33 HHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL 92
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+N WSP + + L S+Q+LL P PN P ++ AQ Y +R + K
Sbjct: 93 RNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 147
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 181 bits (460), Expect = 4e-60
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 1 MIWNAVIFGPHDTPF--EDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDI 58
W + P D+ + T++L+V F+++YP++PPTVRF + ++ P V +GGIC +
Sbjct: 50 YNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRM 109
Query: 59 LQNRWSPTYDVSAILTSIQSLLS---DPNPNSPANSMAAQLYKENRREYEKRVK 109
+ + W+P S ++ + + + N A ++ +++ RV+
Sbjct: 110 VNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 179 bits (455), Expect = 2e-59
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++W+A++ P P+ F L + F EYP KPP ++F +K++HPNV +G ICL I+
Sbjct: 35 LVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS 93
Query: 61 N-RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
+ W P +L ++ L++ PN P A L +N + K + +
Sbjct: 94 SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF 149
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 178 bits (454), Expect = 3e-59
Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W +I P + P++ G F++ + F EYP KPP + F +K++HPN+ G +CL ++
Sbjct: 33 LTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVIS 91
Query: 61 N-RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
W P ++ S+ +L++DP P P + A+ Y ++R+++ K + ++
Sbjct: 92 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 178 bits (453), Expect = 5e-59
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDILQN 61
+ GP TP+EDGT+ L V+ +YP K P++ F +++ HPNV G +CLD++
Sbjct: 40 FWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 62 RWSPTYDVSAIL-TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+P Y + I + LL PNP+ P N AA L +R ++ ++ V
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST 153
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 180 bits (458), Expect = 9e-59
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVY-ADGGICLDIL 59
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ G ICLDIL
Sbjct: 90 TELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 149
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+++W+ + +L S+Q+LL+ P+ P +++ A YK+N +++ +
Sbjct: 150 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 204
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 177 bits (451), Expect = 1e-58
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF-ASKMFHPNV-YADGGICLDI 58
W A+I GP DTP+E+ F++ +E YP PP + F + + H NV A G ICL+I
Sbjct: 48 SKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNI 107
Query: 59 LQ-NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN-RREYEKRVKACVEQS 115
L+ W+P +D+ + ++ LL +P +SP + + + Y+ VK + +
Sbjct: 108 LKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER 166
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 170 bits (434), Expect = 4e-56
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQN- 61
+ P + ++ G F+ E + Y PP V+ +K++HPN+ G ICL +L+
Sbjct: 46 CFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREH 105
Query: 62 -----RWSPTYDVSAILTSIQSLLSD-PNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+PT + ++ + SL +D N + P N AA+ + ++ ++ +V +++
Sbjct: 106 SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 177 bits (450), Expect = 8e-56
Identities = 48/115 (41%), Positives = 75/115 (65%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I GP+D+P++ G F LT+ F +YP KPP V F ++++HPN+ ++G I LDIL+
Sbjct: 33 FHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR 92
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
++WSP +S +L SI SLL DPNP+ P A++YK +R +Y + + ++
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 161 bits (409), Expect = 8e-53
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK-MFHPNVYADGGICLDIL 59
IW G +T + + +KL + F ++YP KPP V F K H +VY++G ICL +L
Sbjct: 36 RIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL 95
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNS 87
+ ++P+ +S ++ SI S+LS
Sbjct: 96 GDDYNPSLSISGLVLSIISMLSSAKEKK 123
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 160 bits (408), Expect = 1e-52
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDIL 59
WN I GP + E+ + L+++ YP+ PP V F SK+ P V G + D
Sbjct: 40 TKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFH 99
Query: 60 QNR-WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLY 97
R W Y + +L ++ ++ P + +
Sbjct: 100 TLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 160 bits (407), Expect = 3e-52
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CL 56
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ +
Sbjct: 59 TRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAI 118
Query: 57 DILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYK 98
+L W +Y + +L ++ L+ Q Y
Sbjct: 119 SVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 159
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 159 bits (404), Expect = 1e-51
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
W+ IFG T FE+ + LT+ + YP+ PPTV+F +K+ V G + + L
Sbjct: 55 SNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLH 114
Query: 60 -QNRWSPTYDVSAILTSI-QSLLSDPNPNSPANSMAAQLYKEN 100
W+ Y + IL S+ Q +LS N P + ++Y N
Sbjct: 115 ILKNWNRNYTIETILISLRQEMLSSANKRLPQPN-EGEVYSNN 156
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 157 bits (400), Expect = 2e-51
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK-MFHPNVYADGGICLDIL 59
IW G +T + + +K+ + F + YP KPP V F K H +VY++G ICL +L
Sbjct: 50 RIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVL 109
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNP 85
+ ++P+ +S ++ SI S+LS
Sbjct: 110 GDDYNPSLSISGLILSIISMLSSAKE 135
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 157 bits (399), Expect = 7e-51
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CL 56
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ +
Sbjct: 69 TRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAI 128
Query: 57 DILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYK 98
+L W +Y + +L ++ L+ Q Y
Sbjct: 129 SVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 169
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 147 bits (374), Expect = 2e-47
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKM--FHPNVYADGGICLDI 58
W + G T +E F+L +F+ YP P V F + HP+VY++G ICL I
Sbjct: 54 TQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSI 113
Query: 59 LQNRWSPTYDVSAILTSIQSLLS 81
L WSP V ++ SI S+LS
Sbjct: 114 LTEDWSPALSVQSVCLSIISMLS 136
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 142 bits (359), Expect = 1e-44
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W+ V+ GP TP+E G + + F E+P KPP++ + + +CL I
Sbjct: 44 LEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM--ITPNGRFKCNTRLCLSITD 101
Query: 61 ---NRWSPTYDVSAILTSIQSLLSDPNPNSPA---NSMAAQLYKENRREYEKRVKACVE 113
+ W+P + VS ILT + S + + P + + + + + K E
Sbjct: 102 FHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCE 160
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 137 bits (345), Expect = 5e-41
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK-----MFHPNVYADGGIC 55
I +I GP DTP+ +G F+ V F ++YP+ PP V + F+PN+Y DG +C
Sbjct: 110 DIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVC 169
Query: 56 LDIL-------QNRWSP-TYDVSAILTSIQSLLSDPNP--NSPA--NSMAAQLYKENRRE 103
L IL + +W+P T +L S+QSL+ P N P S ++ RE
Sbjct: 170 LSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE 229
Query: 104 YEKRVKACVEQ 114
Y+ ++ +
Sbjct: 230 YDGNIRQATVK 240
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 132 bits (333), Expect = 1e-40
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 1 MIWNAVIFG-PHDTPFEDG-----------TFKLTVEFTEEYPNKPPTVRFASKMFHPN- 47
W+ + D+P L F + +P PP VR +
Sbjct: 60 YDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGY 119
Query: 48 VYADGGICLDILQNR-WSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQ-LYKENRREYE 105
V G +C+++L + WS Y + +++ I + L + Q ++ Y
Sbjct: 120 VLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYN 179
Query: 106 KRVKA 110
V+
Sbjct: 180 SIVQI 184
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 48.4 bits (115), Expect = 2e-08
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 7 IFGPHDTPFEDGTFKLTVEF--TEEYPNKPPTV--RFASKMF---HPNVYADGGICLDIL 59
+ G P+ T+ + + + YP PP + S M +V A+G I L L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNP 85
P D+ ++ + + D P
Sbjct: 116 HEWKHPQSDLLGLIQVMIVVFGDEPP 141
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 35.7 bits (82), Expect = 0.001
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 22 LTVEFTEEYPNKPPTVRFASKMF-----------HPNVYADGGICLDILQNRWSPTYDVS 70
+ + YP KPP + + F + ++G I L IL ++
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLI 144
Query: 71 AILTSIQSLLSDP 83
++ + SLL +P
Sbjct: 145 MVVQELMSLLHEP 157
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 30.2 bits (68), Expect = 0.075
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK 42
D +L YP+ P + S+
Sbjct: 48 AEGFMDADIPLELVFHLPVNYPSCLPGISINSE 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.16
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 1 MIWN-AVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL 59
M+ P+ T D + + + R + N CL +L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYEN-------CLLVL 250
Query: 60 QNRWSP----TYDVSA--ILTSIQSLLSD 82
N + +++S +LT+ ++D
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Score = 25.6 bits (55), Expect = 4.9
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 37/130 (28%)
Query: 2 IWNAV-IFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV--YADGGI---C 55
++N +F ++ KL E P NV G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRP-------------AKNVLIDGVLGSGKTW 165
Query: 56 L--DILQNR-----------W---SPTYDVSAILTSIQSLLS--DPNPNSPANSMAAQLY 97
+ D+ + W +L +Q LL DPN S ++ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 98 KENRREYEKR 107
+ + + E R
Sbjct: 226 RIHSIQAELR 235
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort
oxidoreductase, secreted, selenium, selenocysteine;
1.85A {Homo sapiens}
Length = 207
Score = 27.3 bits (61), Expect = 0.97
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 62 RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQ 95
RW VS + I S + A ++ Q
Sbjct: 174 RWHHRTTVSNVKMDILSYMRRQAALGVAENLYFQ 207
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 26.2 bits (57), Expect = 2.7
Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 24/86 (27%)
Query: 8 FGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRF-------------ASKMFHPNVYADGGI 54
+G DT G L ++ + + ++ PN+Y D
Sbjct: 231 YGDADTDMYLGNPLLMRDYLKAFTK--KGLKVVLLHCYPYHREAGYLASVFPNLYFDIS- 287
Query: 55 CLDILQNRWSPTYDVSAILTSIQSLL 80
S +
Sbjct: 288 --------LLDNLGPSGASRVFNEAV 305
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 25.7 bits (56), Expect = 2.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 16 EDGTFKLTVEFTEEYPNKPPTVRFAS 41
E L ++E+YP++ P S
Sbjct: 53 ETVQTTLKFTYSEKYPDEAPLYEIFS 78
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.20.1.3
Length = 152
Score = 25.8 bits (56), Expect = 3.5
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 16 EDGTFKLTVEFTEEYPNKPPTVRFASK 42
+ F L +YP P + S
Sbjct: 71 KMAMFSLACILPFKYPAVLPEITVRSV 97
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 26.0 bits (57), Expect = 4.2
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 20 FKLTVEFTEEYPNKPPTVRFASKM 43
++ Y N P A +M
Sbjct: 821 LIISKTLAPNYTNPQPHAVLAERM 844
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid
starvation signal response, EIF2alpha kinase,
transferase; NMR {Saccharomyces cerevisiae}
Length = 138
Score = 25.4 bits (55), Expect = 4.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 10 PHDTPFEDGTFKLTVEFTEEYPNKPPTVRFAS 41
D + + L T YP P + F +
Sbjct: 54 SVDKEPVESSITLHFAMTPMYPYTAPEIEFKN 85
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 25.5 bits (56), Expect = 4.7
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 90 NSMAAQLYKENRREYEKRVKACVEQ 114
N +A LY E+ +KR + +E+
Sbjct: 2 NKLAV-LYAEHIATLQKRTREIIER 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 25.4 bits (55), Expect = 5.7
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 32 NKPPTVRFASKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPN--SPA 89
NK P+V+ + +F L Q + + TS+ L++P+P +
Sbjct: 144 NKNPSVKSETALFIAR-------ALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSS 196
Query: 90 NSMAAQLYK 98
L K
Sbjct: 197 AEALGTLIK 205
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation,
UB1 conjugation pathway, RWD domain, alpha+beta
sandwich fold, structural genomics; NMR {Homo sapiens}
SCOP: d.20.1.3 PDB: 2dmf_A
Length = 128
Score = 24.9 bits (54), Expect = 7.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 11 HDTPFEDGTFKLTVEFTEEYPNKPPTVRFAS 41
D + F L ++ EYP++ P + +
Sbjct: 52 EDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 24.9 bits (54), Expect = 9.7
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 43 MFHPNVYADGGI 54
++ P + GI
Sbjct: 319 VYSPVALSKYGI 330
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.413
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,832,659
Number of extensions: 95184
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 71
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)