RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15855
(118 letters)
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 124 bits (313), Expect = 1e-38
Identities = 96/117 (82%), Positives = 109/117 (93%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W A+IFGP +TPFEDGTFKL++EFTEEYPNKPPTV+F SKMFHPNVYADG ICLDILQ
Sbjct: 33 LTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 92
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFI 117
NRWSPTYDV+AILTSIQSLL +PNPNSPANS+AAQLY+ENRREYEKRV+ VEQS++
Sbjct: 93 NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWL 149
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 124 bits (311), Expect = 4e-38
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 13/128 (10%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W ++ GP DT +E G FK ++F +YP KPP ++F S+++HPN+ +G +C+ IL
Sbjct: 31 YKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILH 90
Query: 61 N-------------RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKR 107
+ RW P + V IL S+ S+L+DPN SPAN AA++ +EN E++K+
Sbjct: 91 DPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKK 150
Query: 108 VKACVEQS 115
V CV +S
Sbjct: 151 VAQCVRRS 158
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 123 bits (309), Expect = 6e-38
Identities = 81/115 (70%), Positives = 99/115 (86%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
M+WNA+I GP DTP+EDGTF+L +EF EEYPNKPP V+F S+MFHPNVYA+G ICLDILQ
Sbjct: 33 MVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 92
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
NRW+PTYDV++ILTSIQSL +DPNP SPAN AA L+K+++ +Y KRVK VE+S
Sbjct: 93 NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS 147
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 118 bits (297), Expect = 5e-36
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ + VI P + ++ G F + + + YP+ PP V+ + ++HPN+ +G +CL+IL+
Sbjct: 32 LNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR 90
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 118
W P +++I+ +Q L +PNP P N AA++ + NRR +E+ V+ + +I
Sbjct: 91 EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 148
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 115 bits (288), Expect = 8e-35
Identities = 48/114 (42%), Positives = 74/114 (64%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A I GP ++P++ G F LT+ F +YP KPP V F ++++HPN+ ++G ICLDIL+
Sbjct: 31 FHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP +S +L SI SLL DPNP+ P A++YK +R Y + + ++
Sbjct: 91 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 144
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 115 bits (288), Expect = 1e-34
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPN-VYADGGICLDIL 59
W I GP TP+E G F L + +YP PP ++F +K++HPN G ICLDIL
Sbjct: 44 HRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDIL 103
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++ WSP + L SIQ++L+DP P P ++ A++ EN + + K E
Sbjct: 104 KHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 158
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 114 bits (286), Expect = 2e-34
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W A + GP DT +E +KLT+EF +YP KPP V+F + +HPNV G ICLDIL+
Sbjct: 39 FKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK 98
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
W+ +YDV IL S+QSLL +PN SP N+ AA ++ N+ EY+K + + +
Sbjct: 99 ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTA 152
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 113 bits (283), Expect = 5e-34
Identities = 44/114 (38%), Positives = 67/114 (58%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W + I GP + +E G F L + F+ +YP KPP V F ++++H N+ + G ICLDIL+
Sbjct: 32 YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK 91
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+ WSP +S +L SI SLL+D NP P A Y NR E+++ + ++
Sbjct: 92 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 145
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 112 bits (282), Expect = 8e-34
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
IW+ +I GP DTP+ DG F +EF ++YP PP + F + HPN+Y +G +C+ IL
Sbjct: 34 FIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILH 93
Query: 61 NRW-------------SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKR 107
+ SP V IL S+ S+LS+PN S AN A L+++NR E+E++
Sbjct: 94 SPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQ 153
Query: 108 VKACVEQS 115
VK + +S
Sbjct: 154 VKLSILKS 161
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 112 bits (281), Expect = 9e-34
Identities = 41/114 (35%), Positives = 68/114 (59%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ I GP +P+EDG F+L + ++YP + P VRF +K++HPN+ G ICLD+L+
Sbjct: 33 RYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK 92
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
WSP + +L SIQ+LL+ PNPN P + A+ + +N + + + + +
Sbjct: 93 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 110 bits (276), Expect = 5e-33
Identities = 51/114 (44%), Positives = 71/114 (62%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++ VI GP D+PFE GTFKL + EEYP P VRF +K++HPNV G ICLDIL+
Sbjct: 32 RYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK 91
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
++WSP + +L SIQ+LLS PNP+ P + A+ +K N + + +A
Sbjct: 92 DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 145
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 107 bits (269), Expect = 5e-32
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI-CLDIL 59
GP TP+E G F + +E EYP KPP ++F +K++HPN+ + G CLDIL
Sbjct: 32 HHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL 91
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+N WSP + + L S+Q+LL P PN P ++ AQ Y +R + K
Sbjct: 92 KNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 106 bits (265), Expect = 3e-31
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDIL 59
+ +GP TP+E G +K+ V+ ++YP K P++ F +K+FHPN+ A G +CLD++
Sbjct: 29 NEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVI 88
Query: 60 QNRWSPTYDVSAILTS-IQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+ YD++ I S + LL+ PNP P N AA +Y EY++++K +++
Sbjct: 89 NQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 144
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 105 bits (263), Expect = 4e-31
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+ W +I P + P++ G F++ + F EYP KPP + F +K++HPN+ G +CL ++
Sbjct: 30 LTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVIS 88
Query: 61 N-RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P ++ S+ +L++DP P P + A+ Y ++R+++ K + ++
Sbjct: 89 AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 143
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 105 bits (262), Expect = 8e-31
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
M W I G TP+E G FKL + F ++YP+ PP +F +FHPNVY G + L IL
Sbjct: 37 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE 96
Query: 60 -QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W P + IL IQ LL++PN PA + A +Y +NR EYEKRV+A ++
Sbjct: 97 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 152
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 105 bits (262), Expect = 8e-31
Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDIL 59
I GP DTP+E G ++L ++ E YP PP VRF +K++HPN+ + G ICLDIL
Sbjct: 37 TELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 96
Query: 60 QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+++W+ + +L S+Q+LL+ P+ P +++ A YK+N +++ +
Sbjct: 97 KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 151
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 102 bits (254), Expect = 9e-30
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W I G T +ED +KL++EF YP PTV+F + +HPNV G I LDIL+
Sbjct: 31 FKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK 90
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 115
+WS YDV IL SIQSLL +PN +SP N+ AA+L+K N ++K ++ +
Sbjct: 91 EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQ 144
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 102 bits (254), Expect = 1e-29
Identities = 40/113 (35%), Positives = 61/113 (53%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
I GP TP+ G F++ + +++P PP F +K+FHPNV A+G IC+++L+
Sbjct: 36 TDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK 95
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVE 113
W+ + +L +I+ LL PNP S N A +L EN EY R + E
Sbjct: 96 RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 148
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 102 bits (255), Expect = 1e-29
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNV-YADGGICLDIL 59
+ GP TP+EDGT+ L V+ +YP K P++ F +++ HPNV G +CLD++
Sbjct: 26 AEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVI 85
Query: 60 QNRWSPTYDV-SAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
W+P Y + + + LL PNP+ P N AA L +R ++ ++ V
Sbjct: 86 NQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST 141
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 100 bits (250), Expect = 4e-29
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
++W+A++ P P+ F L + F EYP KPP ++F +K++HPNV +G ICL I+
Sbjct: 31 LVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS 89
Query: 61 NRW-SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+ P +L ++ L++ PN P A L +N + K + +
Sbjct: 90 SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR 144
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 98.9 bits (246), Expect = 2e-28
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGI----CLDI 58
W +I GP T +E+ + L +E +YP PP VRF +K+ V + G+ + +
Sbjct: 41 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 100
Query: 59 LQNRWSPTYDVSAILTSIQSLLSDP-NPNSPAN 90
L W +Y + +L ++ L+ N P
Sbjct: 101 LAK-WQNSYSIKVVLQELRRLMMSKENMKLPQP 132
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 98.3 bits (244), Expect = 3e-28
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDIL 59
M W I G ++ ++ F+LT+ FT EY PP V+F + FHPNV G C+D L
Sbjct: 34 MEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL 93
Query: 60 QN--RWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 109
N +W+ Y +S+IL ++Q +LS+P +P N AA++ ++ Y ++
Sbjct: 94 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 94.7 bits (235), Expect = 4e-27
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMF--HPNVYADGGICLDI 58
W + G T +E F+L +F+ YP P V F + HP+VY++G ICL I
Sbjct: 35 TQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSI 94
Query: 59 LQNRWSPTYDVSAILTSIQSLLS 81
L WSP V ++ SI S+LS
Sbjct: 95 LTEDWSPALSVQSVCLSIISMLS 117
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 96.1 bits (238), Expect = 4e-27
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
A I G +TP+E G FKL V E YP +PP +RF + ++HPN+ + G ICLD+L
Sbjct: 32 DDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 91
Query: 60 ---QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 114
+ W P+ +++ +LTSIQ L+S+PNP+ P + + +K N+ + K + E+
Sbjct: 92 LPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 94.4 bits (234), Expect = 6e-27
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
W +I GP DT +E G FK + F ++YP +PP ++F ++++HPNV +G +C+ IL
Sbjct: 30 YRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILH 89
Query: 61 N-------------RWSPTYDVSAILTSIQSLLSDP 83
RW P + V I+ S+ S+L+DP
Sbjct: 90 EPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 94.3 bits (234), Expect = 8e-27
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 3 WNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGG-ICLDILQ- 60
WN I GP + E+ + L+++ YP+ PP V F SK+ P V G + D
Sbjct: 40 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 99
Query: 61 NRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLY 97
W Y + +L ++ ++ P + +
Sbjct: 100 RDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 136
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 87.9 bits (217), Expect = 5e-24
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDIL- 59
+ W+ V+ GP TP+E G + + F E+P KPP++ + + +CL I
Sbjct: 31 LEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC--NTRLCLSITD 88
Query: 60 --QNRWSPTYDVSAILTSIQSLLSDPNP--NSPANSMAA-QLYKENRREYEKRVKACVE 113
+ W+P + VS ILT + S + + P S S + + + K E
Sbjct: 89 FHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCE 147
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 86.9 bits (215), Expect = 8e-24
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKL--TVEFTEEYPNKPPTVRFASKM-----FHPNVYADGG 53
+ G P+ T+ + + + YP PP +V A+G
Sbjct: 47 SRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGK 106
Query: 54 ICLDILQNRWSPTYDVSAILTSIQSLLSDPNP 85
I L L P D+ ++ + + D P
Sbjct: 107 IYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 84.8 bits (209), Expect = 3e-23
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASK-MFHPNVYADGGICLDIL 59
IW G +T + + +KL + F ++YP KPP V F K H +VY++G ICL +L
Sbjct: 28 RIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL 87
Query: 60 QNRWSPTYDVSAILTSIQSLLS 81
+ ++P+ +S ++ SI S+LS
Sbjct: 88 GDDYNPSLSISGLVLSIISMLS 109
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 79.6 bits (196), Expect = 7e-21
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 7 IFGPHDTPFEDGT---FKLTVEFTEEYPNKPPTVRFASKM-----------FHPNVYADG 52
I+G T + + + + YP KPP + + + ++G
Sbjct: 58 IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNG 117
Query: 53 GICLDILQNRWSPTYDVSAILTSIQSLLSDPNP 85
I L IL ++ ++ + SLL +P
Sbjct: 118 WIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 73.3 bits (179), Expect = 3e-18
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 3 WNAVIFG-PHDTPFEDG-----------TFKLTVEFTEEYPNKPPTVRFASK-MFHPNVY 49
W+ + D+P L F + +P PP VR + V
Sbjct: 39 WHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVL 98
Query: 50 ADGGICLDILQNR-WSPTYDVSAILTSIQSLLSDPNPN--SPANSMAAQLYKENRREYEK 106
G +C+++L + WS Y + +++ I + L AN L ++ Y
Sbjct: 99 GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQSYNS 157
Query: 107 RVKA 110
V+
Sbjct: 158 IVQI 161
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 25.1 bits (53), Expect = 2.7
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 55 CLDILQNRWSPTYDVSAILTSIQSLLSDPNPN---SPANSMAAQLYKENRREYEKRVKAC 111
C+++L +L ++ + DP N + A S+ + + VK
Sbjct: 503 CINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562
Query: 112 VEQ 114
+E+
Sbjct: 563 LEK 565
>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354,
C-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 76
Score = 23.1 bits (50), Expect = 6.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 93 AAQLYKENRREYEKRVK 109
A LYK N + Y K K
Sbjct: 57 GAALYKFNGKAYRKDPK 73
>d1stma_ b.121.7.1 (A:) SPMV coat protein {Satellite panicum mosaic
virus [TaxId: 154834]}
Length = 141
Score = 23.6 bits (50), Expect = 6.6
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 1 MIWNAVIFGPHDTPFEDGTFKLTVEFTEEYPNKPPTVRFASKMFHPNVYADGGICLDILQ 60
+++NA ++ P DT D V+ P TVR + + Q
Sbjct: 54 LMYNARLYNPGDT---DSVHATGVQLMGTVPR---TVRLTPR---------------VGQ 92
Query: 61 NRW-SPTYDVSAILTSIQSLLSDPNPNSPANSMAAQ 95
N W + + + +I L+S N+P+N++
Sbjct: 93 NNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVT 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.413
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,136
Number of extensions: 19206
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 38
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)