Query psy15856
Match_columns 118
No_of_seqs 120 out of 721
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:07:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3916|consensus 100.0 2.9E-45 6.3E-50 289.3 7.0 116 1-117 234-350 (372)
2 cd00899 b4GalT Beta-4-Galactos 100.0 7.8E-39 1.7E-43 242.0 10.7 117 1-117 85-202 (219)
3 PF02709 Glyco_transf_7C: N-te 99.9 4E-27 8.7E-32 152.7 6.5 78 9-86 1-78 (78)
4 KOG3917|consensus 99.8 9.6E-21 2.1E-25 144.2 4.5 116 1-118 155-276 (310)
5 PF10111 Glyco_tranf_2_2: Glyc 99.3 1.3E-12 2.8E-17 101.1 5.1 50 25-74 166-215 (281)
6 KOG3588|consensus 99.1 1.1E-10 2.4E-15 94.5 4.7 60 26-87 381-441 (494)
7 cd02510 pp-GalNAc-T pp-GalNAc- 99.0 1.1E-09 2.3E-14 84.6 6.7 59 25-85 169-227 (299)
8 cd06420 GT2_Chondriotin_Pol_N 98.8 1.2E-08 2.5E-13 72.1 5.7 57 26-83 125-181 (182)
9 PF05679 CHGN: Chondroitin N-a 98.7 4.2E-08 9E-13 82.2 6.6 59 29-89 411-473 (499)
10 KOG3736|consensus 98.5 4.4E-08 9.6E-13 83.2 2.7 55 25-79 313-368 (578)
11 COG1216 Predicted glycosyltran 98.4 5.6E-07 1.2E-11 70.2 5.7 59 27-87 167-225 (305)
12 cd04186 GT_2_like_c Subfamily 98.1 8.7E-06 1.9E-10 55.7 5.5 48 27-75 112-159 (166)
13 cd04184 GT2_RfbC_Mx_like Myxoc 98.0 9.6E-06 2.1E-10 58.0 4.1 48 26-75 148-195 (202)
14 cd02526 GT2_RfbF_like RfbF is 97.9 1.4E-05 3E-10 58.6 4.6 47 27-74 151-197 (237)
15 TIGR01556 rhamnosyltran L-rham 97.9 1.3E-05 2.9E-10 61.1 4.6 46 29-75 150-195 (281)
16 KOG3738|consensus 97.9 3.4E-06 7.3E-11 69.5 0.3 63 25-87 291-354 (559)
17 cd06913 beta3GnTL1_like Beta 1 97.7 5.1E-05 1.1E-09 55.4 4.7 43 32-75 161-203 (219)
18 cd06435 CESA_NdvC_like NdvC_li 97.7 5.5E-05 1.2E-09 55.6 4.8 45 27-74 158-202 (236)
19 COG4092 Predicted glycosyltran 97.7 3.8E-05 8.3E-10 60.5 3.6 39 27-65 177-215 (346)
20 cd04185 GT_2_like_b Subfamily 97.7 0.00016 3.5E-09 51.9 6.6 44 29-74 123-166 (202)
21 PF13641 Glyco_tranf_2_3: Glyc 97.7 8.7E-05 1.9E-09 54.1 5.1 47 25-74 157-203 (228)
22 cd02522 GT_2_like_a GT_2_like_ 97.6 8.6E-05 1.9E-09 53.7 4.6 41 29-72 138-178 (221)
23 PF13632 Glyco_trans_2_3: Glyc 97.6 9.8E-05 2.1E-09 52.9 4.5 48 26-75 71-118 (193)
24 KOG3737|consensus 97.6 1.1E-05 2.4E-10 66.5 -0.6 57 22-78 326-385 (603)
25 cd06421 CESA_CelA_like CESA_Ce 97.6 0.00012 2.7E-09 53.2 4.9 47 25-74 158-204 (234)
26 cd02520 Glucosylceramide_synth 97.6 6.4E-05 1.4E-09 54.3 2.9 48 26-74 123-170 (196)
27 cd02525 Succinoglycan_BP_ExoA 97.5 0.00033 7.2E-09 51.2 5.9 48 26-75 155-202 (249)
28 cd04192 GT_2_like_e Subfamily 97.4 0.00028 6.1E-09 51.0 5.2 47 26-73 154-201 (229)
29 cd06437 CESA_CaSu_A2 Cellulose 97.4 0.00021 4.5E-09 52.7 4.1 45 27-74 162-206 (232)
30 cd04195 GT2_AmsE_like GT2_AmsE 97.3 0.00014 3.1E-09 51.9 1.9 46 26-74 149-194 (201)
31 cd06427 CESA_like_2 CESA_like_ 97.2 0.00031 6.7E-09 52.3 2.9 45 27-74 161-205 (241)
32 PRK11204 N-glycosyltransferase 97.1 0.001 2.3E-08 53.5 5.9 46 27-75 209-254 (420)
33 PRK14583 hmsR N-glycosyltransf 97.1 0.001 2.2E-08 54.5 5.5 46 27-75 230-275 (444)
34 TIGR03469 HonB hopene-associat 97.1 0.00042 9E-09 55.9 2.9 47 27-74 209-255 (384)
35 cd06433 GT_2_WfgS_like WfgS an 97.1 0.00082 1.8E-08 47.1 4.0 47 26-74 141-187 (202)
36 TIGR03472 HpnI hopanoid biosyn 96.9 0.00067 1.4E-08 54.4 2.5 47 27-74 200-246 (373)
37 PF13506 Glyco_transf_21: Glyc 96.8 0.0013 2.8E-08 47.9 3.3 50 24-74 98-147 (175)
38 PRK11498 bcsA cellulose syntha 96.5 0.0036 7.9E-08 55.9 4.8 45 27-74 418-462 (852)
39 cd04191 Glucan_BSP_ModH Glucan 96.5 0.007 1.5E-07 46.6 5.8 50 26-75 170-225 (254)
40 COG1215 Glycosyltransferases, 96.3 0.0048 1E-07 49.4 4.1 76 26-115 213-288 (439)
41 TIGR03030 CelA cellulose synth 96.3 0.0058 1.3E-07 53.4 4.8 45 27-74 307-351 (713)
42 TIGR03111 glyc2_xrt_Gpos1 puta 95.3 0.022 4.7E-07 46.8 3.9 46 27-75 215-261 (439)
43 cd06442 DPM1_like DPM1_like re 95.1 0.088 1.9E-06 37.9 6.3 60 23-91 147-208 (224)
44 PRK14716 bacteriophage N4 adso 94.8 0.049 1.1E-06 46.1 4.8 45 27-74 232-282 (504)
45 cd00761 Glyco_tranf_GTA_type G 94.7 0.032 6.9E-07 36.4 2.7 40 30-70 115-154 (156)
46 cd06434 GT2_HAS Hyaluronan syn 93.5 0.077 1.7E-06 38.6 3.0 47 27-74 152-206 (235)
47 PF13712 Glyco_tranf_2_5: Glyc 92.6 0.12 2.6E-06 38.9 3.0 47 24-74 144-191 (217)
48 PLN02726 dolichyl-phosphate be 92.5 0.61 1.3E-05 34.6 6.7 49 24-74 163-211 (243)
49 PRK10018 putative glycosyl tra 91.3 0.93 2E-05 35.3 6.7 58 26-87 154-211 (279)
50 cd04190 Chitin_synth_C C-termi 90.8 0.21 4.6E-06 37.4 2.6 46 27-72 149-211 (244)
51 cd04196 GT_2_like_d Subfamily 90.7 0.47 1E-05 33.5 4.2 46 26-74 151-196 (214)
52 PRK05454 glucosyltransferase M 90.0 0.72 1.6E-05 40.6 5.5 50 26-75 295-350 (691)
53 PRK11234 nfrB bacteriophage N4 89.5 0.51 1.1E-05 41.8 4.3 46 26-74 228-279 (727)
54 PRK10063 putative glycosyl tra 89.5 0.89 1.9E-05 34.5 5.1 48 31-81 149-196 (248)
55 cd06439 CESA_like_1 CESA_like_ 89.2 0.4 8.7E-06 35.3 3.0 43 26-74 180-222 (251)
56 cd04188 DPG_synthase DPG_synth 88.3 0.88 1.9E-05 32.7 4.2 45 28-74 157-201 (211)
57 cd06423 CESA_like CESA_like is 88.1 0.14 3.1E-06 34.1 -0.1 29 25-56 152-180 (180)
58 cd04179 DPM_DPG-synthase_like 85.0 0.31 6.7E-06 33.8 0.3 36 23-62 147-184 (185)
59 PRK15489 nfrB bacteriophage N4 79.7 2.6 5.6E-05 37.4 4.0 43 27-72 237-285 (703)
60 cd04187 DPM1_like_bac Bacteria 79.6 1.8 3.8E-05 30.2 2.5 29 22-50 142-170 (181)
61 cd06438 EpsO_like EpsO protein 75.3 1 2.2E-05 31.8 0.2 29 27-59 155-183 (183)
62 PF13896 Glyco_transf_49: Glyc 49.6 33 0.0007 27.3 4.4 48 41-90 242-289 (317)
63 PRK10073 putative glycosyl tra 41.8 44 0.00096 26.3 4.1 40 33-75 170-210 (328)
64 KOG2943|consensus 36.4 15 0.00032 29.0 0.5 31 29-59 39-79 (299)
65 PF00289 CPSase_L_chain: Carba 32.0 42 0.00092 22.5 2.2 32 43-74 73-106 (110)
66 PF11397 GlcNAc: Glycosyltrans 28.5 1.6E+02 0.0035 23.8 5.4 58 25-84 205-263 (343)
67 PF08260 Kinin: Insect kinin p 26.7 36 0.00077 12.7 0.6 6 48-53 3-8 (8)
68 PF06057 VirJ: Bacterial virul 25.4 21 0.00046 26.8 -0.2 38 50-91 12-49 (192)
69 PF07312 DUF1459: Protein of u 25.3 25 0.00054 22.9 0.1 12 42-53 52-63 (84)
70 cd06436 GlcNAc-1-P_transferase 24.0 72 0.0016 22.5 2.3 21 27-47 163-183 (191)
No 1
>KOG3916|consensus
Probab=100.00 E-value=2.9e-45 Score=289.26 Aligned_cols=116 Identities=49% Similarity=0.928 Sum_probs=113.5
Q ss_pred CCCCCCCCcceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeE
Q psy15856 1 MLSCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRY 80 (118)
Q Consensus 1 ~Y~c~~~p~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y 80 (118)
+|+|+++|||+|+++|+|+|++||..+|||++++++++|.+||||+|.||||||||||+..|+..+|++|+|++..+|+|
T Consensus 234 lY~C~~~PRH~sva~dk~gy~LPY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrY 313 (372)
T KOG3916|consen 234 LYGCPEQPRHMSVALDKFGYRLPYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRY 313 (372)
T ss_pred ccCCCCCCcchhhhhhhccccccchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCcccee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCC-CcHHHHHHHHhcCccccccccccccc
Q psy15856 81 KMMKHHKRVPL-TTVVKKKLLMTSKRRYRLDGENSFLL 117 (118)
Q Consensus 81 ~~l~H~~~~~~-~n~~r~~~l~~~~~~~~~dGl~~l~~ 117 (118)
+||+|. ++.+ +|++|++++.+++.+|..||||||+|
T Consensus 314 kMikH~-~k~n~~n~~Ry~lL~~tk~r~~~DGLnsl~Y 350 (372)
T KOG3916|consen 314 KMIKHH-DKGNEPNPGRYKLLRNTKERQTQDGLNSLKY 350 (372)
T ss_pred EEeecc-cccCCCChHHHHHHHhhhhhhhhccccceee
Confidence 999999 7766 99999999999999999999999998
No 2
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=100.00 E-value=7.8e-39 Score=242.01 Aligned_cols=117 Identities=47% Similarity=0.824 Sum_probs=112.9
Q ss_pred CCCCCCCCcceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeE
Q psy15856 1 MLSCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRY 80 (118)
Q Consensus 1 ~Y~c~~~p~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y 80 (118)
+|+|+++|+|+|+++|+|+|++||..++||+++++|++|.+||||||.|||||+||+||..||..+|+++.|++..+++|
T Consensus 85 ~y~~~~~p~H~s~~~~~~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~ 164 (219)
T cd00899 85 LYGCEEGPRHLSVPLDKFHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRY 164 (219)
T ss_pred cccCCCCCeEEEEeecccccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccce
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999778889
Q ss_pred EeecCCCCCCC-CcHHHHHHHHhcCccccccccccccc
Q psy15856 81 KMMKHHKRVPL-TTVVKKKLLMTSKRRYRLDGENSFLL 117 (118)
Q Consensus 81 ~~l~H~~~~~~-~n~~r~~~l~~~~~~~~~dGl~~l~~ 117 (118)
.||+|.++++. +|+++++++.+++++++.||||+|+|
T Consensus 165 ~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl~Y 202 (219)
T cd00899 165 KMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSLKY 202 (219)
T ss_pred eeeecCCCcccccCHHHHHHHHhhCeEeccCCccceEE
Confidence 99999988755 99999999999999999999999988
No 3
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.94 E-value=4e-27 Score=152.74 Aligned_cols=78 Identities=51% Similarity=1.013 Sum_probs=63.7
Q ss_pred cceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCC
Q psy15856 9 RHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHH 86 (118)
Q Consensus 9 ~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~ 86 (118)
||+++.++.++++++|+..+||+++++|++|.+||||||.|+|||+||+||+.||..+|+++.+++...+.|.++.|.
T Consensus 1 rh~~~~~~~~~~~~~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~H~ 78 (78)
T PF02709_consen 1 RHLSPSIDEFNYKYPYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWKHK 78 (78)
T ss_dssp EEEETEEGGGTSS-SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEET-
T ss_pred CCeeeccCcccCcCcCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEeecC
Confidence 799999999999999999999999999999999999999999999999999999999999999999767777777774
No 4
>KOG3917|consensus
Probab=99.82 E-value=9.6e-21 Score=144.19 Aligned_cols=116 Identities=29% Similarity=0.568 Sum_probs=92.4
Q ss_pred CCCCCC--CCcceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC-Ce
Q psy15856 1 MLSCPP--MPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP-QL 77 (118)
Q Consensus 1 ~Y~c~~--~p~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~-~~ 77 (118)
+|..+. +|+|++.+.-.. +..|..+.||++.+++++|.+.||++|.|||||.||+||+.|+..+|+.+.||.. .+
T Consensus 155 ~Y~fP~~~gp~HiasP~lHP--kYHY~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRpsgi~T 232 (310)
T KOG3917|consen 155 PYDFPGIGGPRHIASPQLHP--KYHYEKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPSGIST 232 (310)
T ss_pred CCCCCccCCcccccCcccCc--hhhhhhhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEecccCccc
Confidence 477774 999999995444 4478999999999999999999999999999999999999999999999999994 44
Q ss_pred eeEEeecCCCCCCC---CcHHHHHHHHhcCcccccccccccccC
Q psy15856 78 GRYKMMKHHKRVPL---TTVVKKKLLMTSKRRYRLDGENSFLLL 118 (118)
Q Consensus 78 g~y~~l~H~~~~~~---~n~~r~~~l~~~~~~~~~dGl~~l~~~ 118 (118)
|.-....|.+++.. ......++-+...++-...||++++|+
T Consensus 233 g~~~TFrHiH~p~~RKRD~k~~~nQke~~rKrDh~~GL~~VkY~ 276 (310)
T KOG3917|consen 233 GSSNTFRHIHGPKHRKRDKKNDKNQKEIKRKRDHVSGLHDVKYL 276 (310)
T ss_pred CccchhhhhcChhhhhhhhhhhhhHHHHHhhhcccccccceeee
Confidence 54355555554432 222334555567788899999999996
No 5
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.34 E-value=1.3e-12 Score=101.05 Aligned_cols=50 Identities=34% Similarity=0.742 Sum_probs=46.4
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....|++++++|++|.+||||||.|.|||+||.||+.||..+|..+.+++
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~ 215 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSP 215 (281)
T ss_pred ccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecCh
Confidence 45677999999999999999999999999999999999999999997766
No 6
>KOG3588|consensus
Probab=99.08 E-value=1.1e-10 Score=94.52 Aligned_cols=60 Identities=32% Similarity=0.458 Sum_probs=54.0
Q ss_pred Cccc-eeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCC
Q psy15856 26 NLVG-GVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87 (118)
Q Consensus 26 ~~~G-g~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~ 87 (118)
..+| |+.++.|.||..|||||....|||+||+|++.....+|+++.|.+. . -..|++|..
T Consensus 381 RdfGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~-p-Gl~H~~H~~ 441 (494)
T KOG3588|consen 381 RDFGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPE-P-GLFHLWHPK 441 (494)
T ss_pred cccCCceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCC-C-ceEEeeccc
Confidence 4455 9999999999999999999999999999999999999999999993 3 458899886
No 7
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.99 E-value=1.1e-09 Score=84.60 Aligned_cols=59 Identities=32% Similarity=0.519 Sum_probs=51.5
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKH 85 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H 85 (118)
+...|++++++|+.|.++|||||.|..||+||.||+.|++.+|.++...+. ....|+.+
T Consensus 169 ~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~--a~v~H~~~ 227 (299)
T cd02510 169 PTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC--SRVGHIFR 227 (299)
T ss_pred ccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec--cEEEEecc
Confidence 346799999999999999999999999999999999999999999998883 44455555
No 8
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.79 E-value=1.2e-08 Score=72.07 Aligned_cols=57 Identities=26% Similarity=0.485 Sum_probs=48.5
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEee
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMM 83 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l 83 (118)
...|++++++|+.|.++|||++.|.+||+||.||+.|+..+|+++.+... .+..+|+
T Consensus 125 ~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~-~~~~~h~ 181 (182)
T cd06420 125 GIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKF-AAIVFHL 181 (182)
T ss_pred EeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecc-cceeeec
Confidence 46689999999999999999999999999999999999999987777663 3344443
No 9
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.68 E-value=4.2e-08 Score=82.17 Aligned_cols=59 Identities=27% Similarity=0.482 Sum_probs=52.6
Q ss_pred ceeeeeeHHhHhhh--cCccCCCcccCcccHHHHHHHHhCC--CeEEccCCCeeeEEeecCCCCC
Q psy15856 29 GGVFIIRTEHFLRV--NGYSNLYWGWGGEDDDMGFRVLQLG--LKITRPLPQLGRYKMMKHHKRV 89 (118)
Q Consensus 29 Gg~~~~~~~~f~~v--nGfde~~~GwG~ED~d~~~Rl~~~g--~~i~r~~~~~g~y~~l~H~~~~ 89 (118)
=|++|+.++||.++ +||++...|||+||.|++.++..+| +.|.|.+. -...|++|.+.-
T Consensus 411 fg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~e--p~L~h~yh~~~C 473 (499)
T PF05679_consen 411 FGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVE--PGLVHRYHPKHC 473 (499)
T ss_pred CceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccC--CCeEEEecccCC
Confidence 39999999999999 9999999999999999999999999 99999883 346778888743
No 10
>KOG3736|consensus
Probab=98.53 E-value=4.4e-08 Score=83.23 Aligned_cols=55 Identities=29% Similarity=0.521 Sum_probs=50.8
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC-Ceee
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP-QLGR 79 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~-~~g~ 79 (118)
++..||.+||.|+.|..+|+||+++..||+|..||+.|+|..|..++.+|. .+|+
T Consensus 313 PtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGH 368 (578)
T KOG3736|consen 313 PTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGH 368 (578)
T ss_pred cccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceee
Confidence 678999999999999999999999999999999999999999999999883 4443
No 11
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.40 E-value=5.6e-07 Score=70.19 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=49.4
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~ 87 (118)
..|+++.++++.|.+||||||.|.-+. ||+|++.|+..+|.++...+. ...++...+..
T Consensus 167 ~~G~~~li~~~~~~~vG~~de~~F~y~-eD~D~~~R~~~~G~~i~~~p~-a~i~H~~g~s~ 225 (305)
T COG1216 167 LSGACLLIRREAFEKVGGFDERFFIYY-EDVDLCLRARKAGYKIYYVPD-AIIYHKIGSSK 225 (305)
T ss_pred cceeeeEEcHHHHHHhCCCCcccceee-hHHHHHHHHHHcCCeEEEeec-cEEEEeccCCC
Confidence 789999999999999999999998887 999999999999999998883 33333334443
No 12
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.08 E-value=8.7e-06 Score=55.73 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=43.9
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
..|++++++++.+.++|||++.|.. ++||.||..|+...|.++...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 112 VSGAFLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred CceeeEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccc
Confidence 6789999999999999999999866 56999999999999999998773
No 13
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.96 E-value=9.6e-06 Score=57.96 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=41.9
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
...++.+.++|+.|.++|||++.|. ++||.||+.|+..+|.++...+.
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccH
Confidence 3456778899999999999999875 57999999999999999998873
No 14
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.94 E-value=1.4e-05 Score=58.62 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=41.8
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..++.+.++|+.|.++||||+.+. .++||.||..|+..+|.++...+
T Consensus 151 ~~~~~~~~rr~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 151 LITSGSLISLEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred eeccceEEcHHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEc
Confidence 346678899999999999999985 56799999999999999998877
No 15
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.93 E-value=1.3e-05 Score=61.10 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=40.5
Q ss_pred ceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 29 GGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 29 Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
++.+.++++.|.+||||||.|..++ ||.|++.|+..+|.++...+.
T Consensus 150 ~sg~li~~~~~~~iG~fde~~fi~~-~D~e~~~R~~~~G~~i~~~~~ 195 (281)
T TIGR01556 150 SSGCLITREVYQRLGMMDEELFIDH-VDTEWSLRAQNYGIPLYIDPD 195 (281)
T ss_pred cCcceeeHHHHHHhCCccHhhcccc-hHHHHHHHHHHCCCEEEEeCC
Confidence 3345799999999999999987765 999999999999999998883
No 16
>KOG3738|consensus
Probab=97.87 E-value=3.4e-06 Score=69.55 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=53.7
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC-CCeeeEEeecCCC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL-PQLGRYKMMKHHK 87 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~-~~~g~y~~l~H~~ 87 (118)
+.+.||.+.|.|+.|..+|-||-.+.-||||..|+..|||..|..++.+| +.+|.-+--.|.-
T Consensus 291 P~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHVFRkrHpy 354 (559)
T KOG3738|consen 291 PAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHVFRKRHPY 354 (559)
T ss_pred ccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhhhhccCCC
Confidence 46889999999999999999999999999999999999999999999988 3455433334443
No 17
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.73 E-value=5.1e-05 Score=55.45 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=38.5
Q ss_pred eeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 32 FIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 32 ~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
+.++|+.|.++|||++.+.+++ ||.||..|+..+|.++.+.+.
T Consensus 161 ~~~rr~~~~~~g~f~~~~~~~~-eD~~l~~r~~~~g~~i~~~~~ 203 (219)
T cd06913 161 WFCSREWFSHVGPFDEGGKGVP-EDLLFFYEHLRKGGGVYRVDR 203 (219)
T ss_pred ceeehhHHhhcCCccchhccch-hHHHHHHHHHHcCCceEEEcc
Confidence 4689999999999999876555 999999999999999999884
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.73 E-value=5.5e-05 Score=55.60 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=40.6
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|+.++++|+.|.++|||++.+. .||.||+.|+...|.++...+
T Consensus 158 ~~g~~~~~rr~~~~~iGgf~~~~~---~eD~dl~~r~~~~G~~~~~~~ 202 (236)
T cd06435 158 QHGTMCLIRRSALDDVGGWDEWCI---TEDSELGLRMHEAGYIGVYVA 202 (236)
T ss_pred EecceEEEEHHHHHHhCCCCCccc---cchHHHHHHHHHCCcEEEEcc
Confidence 457788999999999999999763 699999999999999999877
No 19
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=3.8e-05 Score=60.52 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=36.0
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHh
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQ 65 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~ 65 (118)
...+...+++..|.+.||+||+|.|.|.||.||..|+-.
T Consensus 177 ~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 177 PYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred cccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHH
Confidence 345889999999999999999999999999999999766
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.68 E-value=0.00016 Score=51.86 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=39.6
Q ss_pred ceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 29 GGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 29 Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
++.+.++|+.|.++|||++.|..|| ||.||..|+..+|.++ ..+
T Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~-eD~~~~~r~~~~G~~i-~~~ 166 (202)
T cd04185 123 FVGVLISRRVVEKIGLPDKEFFIWG-DDTEYTLRASKAGPGI-YVP 166 (202)
T ss_pred eEEEEEeHHHHHHhCCCChhhhccc-hHHHHHHHHHHcCCcE-Eec
Confidence 3667899999999999999988777 9999999999999999 666
No 21
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.67 E-value=8.7e-05 Score=54.14 Aligned_cols=47 Identities=26% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....|++++++++.|.++||||+ + ..+||.|+..|+..+|.++...+
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~-~--~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP-F--ILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S-S--SSSHHHHHHHHHHHTT--EEEEE
T ss_pred eeccCcEEEEEHHHHHHhCCCCC-C--CcccHHHHHHHHHHCCCcEEEEC
Confidence 34568999999999999999999 2 33499999999999999999866
No 22
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.63 E-value=8.6e-05 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=37.4
Q ss_pred ceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEc
Q psy15856 29 GGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITR 72 (118)
Q Consensus 29 Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r 72 (118)
+.+++++++.|.++||||+.+ ..||.||+.|+..+|.++..
T Consensus 138 ~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 138 DQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred CceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCEEEc
Confidence 457899999999999999998 56999999999999998876
No 23
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.60 E-value=9.8e-05 Score=52.95 Aligned_cols=48 Identities=31% Similarity=0.500 Sum_probs=41.2
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
...|++++++++.+.+||||+ ...-.+ ||.|++.|+..+|.++..++.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~ 118 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPD 118 (193)
T ss_pred cccCcceeeeHHHHHHhCccc-cccccc-chHHHHHHHHHCCCEEEEecc
Confidence 367999999999999999999 333344 999999999999999998873
No 24
>KOG3737|consensus
Probab=97.59 E-value=1.1e-05 Score=66.54 Aligned_cols=57 Identities=33% Similarity=0.572 Sum_probs=51.7
Q ss_pred CCC--CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC-Cee
Q psy15856 22 LPY--NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP-QLG 78 (118)
Q Consensus 22 ~~~--~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~-~~g 78 (118)
-|| ++..||.+||.|+.|.++|=||++..-||+|..|+.+.+|..|.+|.++|. .+|
T Consensus 326 ePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVG 385 (603)
T KOG3737|consen 326 EPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVG 385 (603)
T ss_pred CCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccc
Confidence 355 578899999999999999999999999999999999999999999999993 444
No 25
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=97.59 E-value=0.00012 Score=53.22 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....|++++++|+.|.++|||++.+. .||.|+..|+..+|.++...+
T Consensus 158 ~~~~g~~~~~r~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~ 204 (234)
T cd06421 158 AFCCGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred ceecCceeeEeHHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEec
Confidence 34578999999999999999998664 599999999999999999877
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.55 E-value=6.4e-05 Score=54.33 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=41.3
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...|++++++|+.|.++|||++. .....||.||..|+..+|.++...+
T Consensus 123 ~~~g~~~~~r~~~~~~~ggf~~~-~~~~~eD~~l~~rl~~~G~~i~~~~ 170 (196)
T cd02520 123 CAFGKSMALRREVLDAIGGFEAF-ADYLAEDYFLGKLIWRLGYRVVLSP 170 (196)
T ss_pred cccCceeeeEHHHHHhccChHHH-hHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 46689999999999999999763 2344699999999999999998777
No 27
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.47 E-value=0.00033 Score=51.20 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=42.6
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
...|++++++++.|.++|||++.+. .+||.||..|+..+|.++...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~eD~~l~~r~~~~G~~~~~~~~ 202 (249)
T cd02525 155 VDTVHHGAYRREVFEKVGGFDESLV--RNEDAELNYRLRKAGYKIWLSPD 202 (249)
T ss_pred ccccccceEEHHHHHHhCCCCcccC--ccchhHHHHHHHHcCcEEEEcCC
Confidence 4568889999999999999999875 25999999999999999998773
No 28
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.44 E-value=0.00028 Score=50.95 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=39.7
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCC-eEEcc
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGL-KITRP 73 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~-~i~r~ 73 (118)
...|++++++++.|.++||||+.+. ...||+|+..|+..+|. ++...
T Consensus 154 ~~~g~~~~~rr~~~~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~~~ 201 (229)
T cd04192 154 MCNGANMAYRKEAFFEVGGFEGNDH-IASGDDELLLAKVASKYPKVAYL 201 (229)
T ss_pred ccccceEEEEHHHHHHhcCCccccc-cccCCHHHHHHHHHhCCCCEEEe
Confidence 3468889999999999999998764 45699999999999999 66654
No 29
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.41 E-value=0.00021 Score=52.66 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=39.5
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|+.+.++|+.|.++|||++... .||.||..|+..+|.++...+
T Consensus 162 ~~g~~~~~rr~~~~~vgg~~~~~~---~ED~~l~~rl~~~G~~~~~~~ 206 (232)
T cd06437 162 FNGTAGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLD 206 (232)
T ss_pred eccchhhhhHHHHHHhCCCCCCcc---hhhHHHHHHHHHCCCeEEEec
Confidence 356777899999999999998653 599999999999999999887
No 30
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.28 E-value=0.00014 Score=51.92 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=40.4
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...++.++++|+.+.++|||++. .+.||.+|..|+..+|.++...+
T Consensus 149 ~~~~~~~~~rr~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 149 PFNHPTVMFRKSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred CCCChHHhhhHHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceeccc
Confidence 34467789999999999999976 56899999999999999998877
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=97.18 E-value=0.00031 Score=52.29 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=38.9
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|++++++|+.|.++|||++.. + .||.|+..|+..+|.++...+
T Consensus 161 ~~g~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 161 LGGTSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred cCCchHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCceEEEec
Confidence 34677899999999999999842 3 599999999999999999876
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.15 E-value=0.001 Score=53.53 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=41.5
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
..|++++++|+.+.++|||++.+. .||.|+..|+..+|.++...+.
T Consensus 209 ~~G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 209 VSGVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred ecceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccc
Confidence 458889999999999999999875 4999999999999999998884
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.10 E-value=0.001 Score=54.54 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=41.1
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
..|++.+++|+.+.++|||++.+. .||.|+..|++.+|.++...+.
T Consensus 230 ~sG~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 230 VSGVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred ecCceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeec
Confidence 457889999999999999999875 4999999999999999988773
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.07 E-value=0.00042 Score=55.86 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=40.6
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|++++++|+.|.++|||++.+.-. .||.+++.|+..+|.++....
T Consensus 209 ~~G~~~lirr~~~~~vGGf~~~~~~~-~ED~~L~~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 209 AAGGCILIRREALERIGGIAAIRGAL-IDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred ecceEEEEEHHHHHHcCCHHHHhhCc-ccHHHHHHHHHHcCCcEEEEe
Confidence 57999999999999999999865433 599999999999998888654
No 35
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.06 E-value=0.00082 Score=47.14 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...++.+.++++.|.++|||++.+. + .||.|+..|+...|.++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~D~~~~~r~~~~g~~~~~~~ 187 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESYR-I-AADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhhC-c-hhhHHHHHHHHHcCCceEecc
Confidence 3455677899999999999999885 3 389999999999999997666
No 36
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.88 E-value=0.00067 Score=54.42 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=39.9
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|.+++++|+.|.++|||++..... .||.++..|+..+|.++...+
T Consensus 200 ~~G~~~a~RR~~l~~iGGf~~~~~~~-~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 200 CFGATMALRRATLEAIGGLAALAHHL-ADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred ccChhhheeHHHHHHcCChHHhcccc-hHHHHHHHHHHHcCCeEEecc
Confidence 56888999999999999998743222 499999999999999998765
No 37
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=96.80 E-value=0.0013 Score=47.92 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 24 YNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 24 ~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....+|+.++++|+.+.++|||+. +...=.||..+..+++..|+++...+
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG~~~-l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGGFEA-LADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred CCceecceeeeEHHHHHHcccHHH-HhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 356899999999999999999986 22223599999999999999999766
No 38
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.53 E-value=0.0036 Score=55.90 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=40.5
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
+.|+++.++|+.+.+||||++... .||.|++.|++.+|.++...+
T Consensus 418 ~~Gs~aviRReaLeeVGGfd~~ti---tED~dlslRL~~~Gyrv~yl~ 462 (852)
T PRK11498 418 FCGSCAVIRRKPLDEIGGIAVETV---TEDAHTSLRLHRRGYTSAYMR 462 (852)
T ss_pred cccceeeeEHHHHHHhcCCCCCcc---CccHHHHHHHHHcCCEEEEEe
Confidence 568999999999999999998753 499999999999999998765
No 39
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.53 E-value=0.007 Score=46.57 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=42.8
Q ss_pred CccceeeeeeHHhHhhhcCccC--CCcccC----cccHHHHHHHHhCCCeEEccCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSN--LYWGWG----GEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde--~~~GwG----~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
.++|.++.++|+.|.+++|+++ ++.+|+ -||.+++.|++.+|.++...+.
T Consensus 170 ~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 170 NYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred CccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 4679999999999999988875 566775 4899999999999999998773
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.0048 Score=49.35 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=55.4
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCCCCCCCcHHHHHHHHhcCc
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHKRVPLTTVVKKKLLMTSKR 105 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~~~~~~n~~r~~~l~~~~~ 105 (118)
...|.+.+++|+.+.++||+++...+ ||.++..|++.+|.++...+.. +-+... ++.+..+.+.+.
T Consensus 213 ~~~G~~~~~rr~aL~~~g~~~~~~i~---ED~~lt~~l~~~G~~~~~~~~~------~~~~~~-----p~t~~~~~~Qr~ 278 (439)
T COG1215 213 FLSGSSSAFRRSALEEVGGWLEDTIT---EDADLTLRLHLRGYRVVYVPEA------IVWTEA-----PETLKELWRQRL 278 (439)
T ss_pred EEcceeeeEEHHHHHHhCCCCCCcee---ccHHHHHHHHHCCCeEEEeecc------eEeeeC-----cccHHHHHHHHH
Confidence 46789999999999999999998874 9999999999999999987732 222322 223334455555
Q ss_pred cccccccccc
Q psy15856 106 RYRLDGENSF 115 (118)
Q Consensus 106 ~~~~dGl~~l 115 (118)
||..-++..+
T Consensus 279 RW~~g~~~~~ 288 (439)
T COG1215 279 RWARGGLQVL 288 (439)
T ss_pred HHHcccceee
Confidence 6655555443
No 41
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.32 E-value=0.0058 Score=53.37 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
+.|.++.++|+.+.+||||++... .||.|++.|++.+|.++...+
T Consensus 307 ~~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 307 FCGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNSAYLD 351 (713)
T ss_pred ecCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEec
Confidence 568899999999999999998654 599999999999999988766
No 42
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=95.30 E-value=0.022 Score=46.85 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=38.0
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHh-CCCeEEccCC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQ-LGLKITRPLP 75 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~-~g~~i~r~~~ 75 (118)
..|+..+++|+.+.++|||++... .||.|+..|+.. .|.++...+.
T Consensus 215 ~sGa~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~~ 261 (439)
T TIGR03111 215 LSGAFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCEN 261 (439)
T ss_pred EccHHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECCC
Confidence 346677899999999999998764 599999999974 6888887763
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.13 E-value=0.088 Score=37.90 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCCCccceeeeeeHHhHhhhc-CccCCCcccC-cccHHHHHHHHhCCCeEEccCCCeeeEEeecCCCCCCC
Q psy15856 23 PYNNLVGGVFIIRTEHFLRVN-GYSNLYWGWG-GEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHKRVPL 91 (118)
Q Consensus 23 ~~~~~~Gg~~~~~~~~f~~vn-Gfde~~~GwG-~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~~~~~ 91 (118)
+.....|+.++++|+.+.+++ +++ ..| .+|.||..|+..+|.++..++ +....|......
T Consensus 147 ~~~~~~~~~~~~~r~~~~~ig~~~~----~~~~~~~~~l~~~~~~~g~~i~~~p-----~~~~~~~~g~s~ 208 (224)
T cd06442 147 KVSDPTSGFRAYRREVLEKLIDSLV----SKGYKFQLELLVRARRLGYRIVEVP-----ITFVDREHGESK 208 (224)
T ss_pred CCCCCCCccchhhHHHHHHHhhhcc----CCCcEEeHHHHHHHHHcCCeEEEeC-----eEEeccCCCcCc
Confidence 344566888999999999998 333 223 258999999999999999877 233445554443
No 44
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=94.82 E-value=0.049 Score=46.14 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.7
Q ss_pred ccceeeeeeHHhHhhh-----cC-ccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRV-----NG-YSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~v-----nG-fde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|..++++|+.+.++ || ||+... -||.|++.|+..+|.++...+
T Consensus 232 ~~Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p 282 (504)
T PRK14716 232 SAGVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVR 282 (504)
T ss_pred cCCeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEec
Confidence 4588999999999998 33 988754 499999999999999999877
No 45
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.68 E-value=0.032 Score=36.41 Aligned_cols=40 Identities=28% Similarity=0.441 Sum_probs=34.9
Q ss_pred eeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeE
Q psy15856 30 GVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70 (118)
Q Consensus 30 g~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i 70 (118)
++++++++.|.+++|+++.+..+ +||.++..++...|..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 115 GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKVA 154 (156)
T ss_pred chheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhcccc
Confidence 88999999999999999988655 79999999999887643
No 46
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=93.48 E-value=0.077 Score=38.57 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=35.6
Q ss_pred ccceeeeeeHHhHhhhcCccCCC-----c---ccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLY-----W---GWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~-----~---GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|.++.++++.+.+++ |++.| . .-.+||.+|..|+..+|.++...+
T Consensus 152 ~~G~~~~~rr~~l~~~~-~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~ 206 (235)
T cd06434 152 LSGRTAAYRTEILKDFL-FLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred ccCcHHHHHHHHHhhhh-hHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEec
Confidence 45667778888888874 55544 1 124699999999999999999876
No 47
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=92.61 E-value=0.12 Score=38.90 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCCccceeeeeeHHhHhhhcCccCC-CcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 24 YNNLVGGVFIIRTEHFLRVNGYSNL-YWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 24 ~~~~~Gg~~~~~~~~f~~vnGfde~-~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....=|..++++++.+ +|||. |.||-.-|.|++.++..+|.++.-.+
T Consensus 144 V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~ 191 (217)
T PF13712_consen 144 VQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPP 191 (217)
T ss_dssp EEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE--
T ss_pred EEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecC
Confidence 3455678888888888 99999 89999999999999999999986444
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=92.48 E-value=0.61 Score=34.63 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=39.7
Q ss_pred CCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 24 YNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 24 ~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
.....|+..+++|+.+.+++.+.+.. +|. +|.|+..|+..+|+++..+|
T Consensus 163 ~~d~~g~~~~~rr~~~~~i~~~~~~~-~~~-~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 163 VSDLTGSFRLYKRSALEDLVSSVVSK-GYV-FQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred CCcCCCcccceeHHHHHHHHhhccCC-CcE-EehHHHHHHHHcCCcEEEeC
Confidence 34467788899999999998765533 343 58999999999999999888
No 49
>PRK10018 putative glycosyl transferase; Provisional
Probab=91.31 E-value=0.93 Score=35.31 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=38.9
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~ 87 (118)
...|..+.+ .......+|||+.+. ..||.||..|+...+..+...+. .-.++++.|..
T Consensus 154 n~ig~~~~~-~~~~~~~~~fd~~~~--~~eDydlwlrl~~~~~~~~~~~~-~l~~y~~~~~s 211 (279)
T PRK10018 154 NIIGNQVFT-WAWRFKECLFDTELK--AAQDYDIFLRMVVEYGEPWKVEE-ATQILHINHGE 211 (279)
T ss_pred cCcCceeee-hhhhhhhcccCCCCC--ccccHHHHHHHHHhcCceEeecc-ceEEEEcCCCC
Confidence 344555544 444456788999885 46999999999998877776663 33445555553
No 50
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=90.79 E-value=0.21 Score=37.38 Aligned_cols=46 Identities=26% Similarity=0.127 Sum_probs=36.2
Q ss_pred ccceeeeeeHHhHhhhcCccCCC-----------ccc------CcccHHHHHHHHhCCCeEEc
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLY-----------WGW------GGEDDDMGFRVLQLGLKITR 72 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~-----------~Gw------G~ED~d~~~Rl~~~g~~i~r 72 (118)
..|.+++++++.+.+++|+...+ .|+ =.||.++..|+..+|.++..
T Consensus 149 ~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 149 LPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred CCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 55788899999999998876421 011 25999999999999998886
No 51
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.65 E-value=0.47 Score=33.54 Aligned_cols=46 Identities=9% Similarity=-0.155 Sum_probs=36.1
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...|+.+.++|+.+.++++|++.+ .| .||.++..++.. +.++...+
T Consensus 151 ~~~~~~~~~r~~~~~~~~~~~~~~-~~-~~D~~~~~~~~~-~~~~~~~~ 196 (214)
T cd04196 151 VVTGCTMAFNRELLELALPFPDAD-VI-MHDWWLALLASA-FGKVVFLD 196 (214)
T ss_pred ccCCceeeEEHHHHHhhccccccc-cc-cchHHHHHHHHH-cCceEEcc
Confidence 456888999999999999999985 23 589999988887 44566555
No 52
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=89.98 E-value=0.72 Score=40.62 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=42.7
Q ss_pred CccceeeeeeHHhHhhhcCccC--CCcccCcc----cHHHHHHHHhCCCeEEccCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSN--LYWGWGGE----DDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde--~~~GwG~E----D~d~~~Rl~~~g~~i~r~~~ 75 (118)
.++|.|..++++.|.+++|.+. +..+||++ |.+...++..+|.++...+.
T Consensus 295 ~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd 350 (691)
T PRK05454 295 NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPD 350 (691)
T ss_pred ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence 4789999999999999998765 45567654 99999999999999998873
No 53
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=89.53 E-value=0.51 Score=41.78 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=37.9
Q ss_pred Cccceeeee-eH--HhHhhhc---CccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFII-RT--EHFLRVN---GYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~-~~--~~f~~vn---Gfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...|..+++ +| +...++| +|+...- -||.|++.||..+|.++...+
T Consensus 228 ~l~G~~~af~Rr~l~al~~~ggg~~~~~~~l---TED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 228 PSAGVGTCFSRRAVTALLEDGDGIAFDVQSL---TEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred ccCCceEEEecccHHHHHHhcCCCCcCCCcc---hHHHHHHHHHHHCCCEEEEcc
Confidence 456778999 55 4588898 6888776 399999999999999998877
No 54
>PRK10063 putative glycosyl transferase; Provisional
Probab=89.52 E-value=0.89 Score=34.50 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=36.3
Q ss_pred eeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEE
Q psy15856 31 VFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYK 81 (118)
Q Consensus 31 ~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~ 81 (118)
.+.++++.+. .+|||+.+. . .||.||..|+..+|.++..++.....|.
T Consensus 149 ~~~~~~~~~~-~~~fd~~~~-~-~~Dydl~lrl~~~g~~~~~v~~~l~~y~ 196 (248)
T PRK10063 149 AIFFPVSGLK-KWRYDLQYK-V-SSDYALAARLYKAGYAFKKLNGLVSEFS 196 (248)
T ss_pred EEEEEHHHHh-cCCCCcccc-h-HHhHHHHHHHHHcCCcEEEcCceeEEEe
Confidence 4455666654 688999874 2 4999999999999999998885455554
No 55
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.21 E-value=0.4 Score=35.25 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...|++++++++.|. ||++... .||.++..|+..+|.++...+
T Consensus 180 ~~~g~~~~~rr~~~~---~~~~~~~---~eD~~l~~~~~~~G~~~~~~~ 222 (251)
T cd06439 180 GANGAIYAIRRELFR---PLPADTI---NDDFVLPLRIARQGYRVVYEP 222 (251)
T ss_pred eecchHHHhHHHHhc---CCCcccc---hhHHHHHHHHHHcCCeEEecc
Confidence 355677778888777 7766543 599999999999999998777
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=88.33 E-value=0.88 Score=32.71 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=36.5
Q ss_pred cceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 28 VGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 28 ~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|...++|+.+.++.+..+ ..+|+ +|.||..|+..+|.++..++
T Consensus 157 ~~g~~~~~r~~~~~~~~~~~-~~~~~-~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 157 QCGFKLFTRDAARRLFPRLH-LERWA-FDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred ccCceeEcHHHHHHHHhhhh-ccceE-eeHHHHHHHHHcCCeEEEcC
Confidence 34678899999999986533 33666 79999999999999998777
No 57
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.15 E-value=0.14 Score=34.09 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCccc
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGED 56 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED 56 (118)
....|++++++++.+.++|||++...+ ||
T Consensus 152 ~~~~g~~~~~~~~~~~~~ggf~~~~~~---eD 180 (180)
T cd06423 152 LVLSGAFGAFRREALREVGGWDEDTLT---ED 180 (180)
T ss_pred eecCchHHHHHHHHHHHhCCccccCcC---CC
Confidence 356789999999999999999999763 66
No 58
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=85.02 E-value=0.31 Score=33.85 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=27.6
Q ss_pred CCCCccceeeeeeHHhHhhh--cCccCCCcccCcccHHHHHH
Q psy15856 23 PYNNLVGGVFIIRTEHFLRV--NGYSNLYWGWGGEDDDMGFR 62 (118)
Q Consensus 23 ~~~~~~Gg~~~~~~~~f~~v--nGfde~~~GwG~ED~d~~~R 62 (118)
+.....|++++++|+.|.++ ++|++.|. +|.|+..|
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~----~~~~~~~~ 184 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALLSLLESNGFE----FGLELLVG 184 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHHhhccccCcc----eeeEeeec
Confidence 34557789999999999999 78888774 55565544
No 59
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=79.70 E-value=2.6 Score=37.39 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=32.4
Q ss_pred ccceeeeeeHHhHhhh---cC---ccCCCcccCcccHHHHHHHHhCCCeEEc
Q psy15856 27 LVGGVFIIRTEHFLRV---NG---YSNLYWGWGGEDDDMGFRVLQLGLKITR 72 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~v---nG---fde~~~GwG~ED~d~~~Rl~~~g~~i~r 72 (118)
.-|-.++++++...++ || |+.+-- =||.|++.||...|++...
T Consensus 237 l~Gv~~~frr~aL~~l~~~gg~~~~n~~sL---TED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 237 SAGVGTCFSRRALLALMKERGNQPFNTSSL---TEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred ccCcceeeeHHHHHHHHHhcCCCCCCCCCc---hHhHHHHHHHHHCCCceEE
Confidence 3455788888887766 54 543222 2999999999999999886
No 60
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=79.61 E-value=1.8 Score=30.19 Aligned_cols=29 Identities=3% Similarity=-0.133 Sum_probs=24.7
Q ss_pred CCCCCccceeeeeeHHhHhhhcCccCCCc
Q psy15856 22 LPYNNLVGGVFIIRTEHFLRVNGYSNLYW 50 (118)
Q Consensus 22 ~~~~~~~Gg~~~~~~~~f~~vnGfde~~~ 50 (118)
.+.+...++..+++++.+.++|||||.+.
T Consensus 142 ~~~~~~~~~~~~~~r~~~~~i~~~d~~~~ 170 (181)
T cd04187 142 VDIPDNGGDFRLMDRKVVDALLLLPERHR 170 (181)
T ss_pred CCCCCCCCCEEEEcHHHHHHHHhcCCCCc
Confidence 34556778999999999999999999885
No 61
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=75.26 E-value=1 Score=31.76 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=22.8
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHH
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDM 59 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~ 59 (118)
..|++++++|+.+.+ +||++.=. .||.||
T Consensus 155 ~~G~~~~~rr~~l~~-~g~~~~~l---~ED~~~ 183 (183)
T cd06438 155 LGGTGMCFPWAVLRQ-APWAAHSL---TEDLEF 183 (183)
T ss_pred ecCchhhhHHHHHHh-CCCCCCCc---ccccCC
Confidence 578888999999999 88986422 488775
No 62
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=49.63 E-value=33 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=37.6
Q ss_pred hhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCCCCC
Q psy15856 41 RVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHKRVP 90 (118)
Q Consensus 41 ~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~~~~ 90 (118)
.+=-|||.|.|+|..-.-...-|..+|.++.-.+. +...|..|.....
T Consensus 242 ~~P~yDErF~~yg~nk~s~~~eL~~~gy~F~VL~~--aFlVH~~h~~~~~ 289 (317)
T PF13896_consen 242 NVPLYDERFRGYGFNKISQIYELCAAGYRFHVLPN--AFLVHRPHKPSNS 289 (317)
T ss_pred CCCCCcccccccccchHHHHHHHHHcCCEEEEcCC--eeEEecCCCCccc
Confidence 34559999999999778888889999999998883 5556667765443
No 63
>PRK10073 putative glycosyl transferase; Provisional
Probab=41.77 E-value=44 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=28.7
Q ss_pred eeeHHhHhhhc-CccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 33 IIRTEHFLRVN-GYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 33 ~~~~~~f~~vn-Gfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
.++|+.+.+.| .|+++.. .||.++..++..++-++...+.
T Consensus 170 l~Rr~~l~~~~~~f~~~~~---~eD~~~~~~~~~~~~~v~~~~~ 210 (328)
T PRK10073 170 VYRRDFIVKNNIKFEPGLH---HQDIPWTTEVMFNALRVRYTEQ 210 (328)
T ss_pred HHHHHHHHHcCCccCCCCE---eccHHHHHHHHHHCCEEEEECC
Confidence 34455554544 2666553 5999999999999999988884
No 64
>KOG2943|consensus
Probab=36.41 E-value=15 Score=29.02 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=22.7
Q ss_pred ceeeeeeHHhHhh------hc----CccCCCcccCcccHHH
Q psy15856 29 GGVFIIRTEHFLR------VN----GYSNLYWGWGGEDDDM 59 (118)
Q Consensus 29 Gg~~~~~~~~f~~------vn----Gfde~~~GwG~ED~d~ 59 (118)
=|+-.+++++|.+ -| -+++.|.|+|.||.-|
T Consensus 39 lgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshF 79 (299)
T KOG2943|consen 39 LGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHF 79 (299)
T ss_pred hcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccE
Confidence 3677789999998 33 3555678999999444
No 65
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.02 E-value=42 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=25.4
Q ss_pred cCccCCCcccC--cccHHHHHHHHhCCCeEEccC
Q psy15856 43 NGYSNLYWGWG--GEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 43 nGfde~~~GwG--~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
.|-+--+.||| -|+.+|..++..+|+++.-|+
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 37777788888 589999999999999887655
No 66
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=28.48 E-value=1.6e+02 Score=23.82 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=46.2
Q ss_pred CCccceeeeeeHHhHhhhcCccCCC-cccCcccHHHHHHHHhCCCeEEccCCCeeeEEeec
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLY-WGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMK 84 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~-~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~ 84 (118)
..++++.+++.+.+|.+-=.||... +-+=||-.-+..|++-+|..+--|+. ....|.+
T Consensus 205 ~~f~aaGF~Fa~~~~~~eVP~DP~lp~lF~GEE~~~aaRlwT~GYD~Y~P~~--~v~~H~Y 263 (343)
T PF11397_consen 205 QPFWAAGFSFAPGHFVREVPYDPHLPFLFDGEEISMAARLWTHGYDFYSPTR--NVLFHLY 263 (343)
T ss_pred eceecccEEEcchhheecCCCCCCcccccccHHHHHHHHHHHcCCccccCCC--ceeEEEc
Confidence 4677899999999999999999876 22445889999999999999998883 3455554
No 67
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=26.72 E-value=36 Score=12.73 Aligned_cols=6 Identities=33% Similarity=1.193 Sum_probs=2.6
Q ss_pred CCcccC
Q psy15856 48 LYWGWG 53 (118)
Q Consensus 48 ~~~GwG 53 (118)
.|..||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 344454
No 68
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=25.39 E-value=21 Score=26.78 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=28.3
Q ss_pred cccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCCCCCC
Q psy15856 50 WGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHKRVPL 91 (118)
Q Consensus 50 ~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~~~~~ 91 (118)
-||-..|.++...|..+|+.+.-++. -+ ..++.+.+..
T Consensus 12 gGw~~~d~~~a~~l~~~G~~VvGvds--l~--Yfw~~rtP~~ 49 (192)
T PF06057_consen 12 GGWRDLDKQIAEALAKQGVPVVGVDS--LR--YFWSERTPEQ 49 (192)
T ss_pred CCchhhhHHHHHHHHHCCCeEEEech--HH--HHhhhCCHHH
Confidence 38999999999999999999997662 23 3345555543
No 69
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=25.33 E-value=25 Score=22.92 Aligned_cols=12 Identities=42% Similarity=1.511 Sum_probs=9.7
Q ss_pred hcCccCCCcccC
Q psy15856 42 VNGYSNLYWGWG 53 (118)
Q Consensus 42 vnGfde~~~GwG 53 (118)
.--|+..|||||
T Consensus 52 AaAYPsv~waWG 63 (84)
T PF07312_consen 52 AAAYPSVYWAWG 63 (84)
T ss_pred cccCcceeeeec
Confidence 345888999999
No 70
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=23.99 E-value=72 Score=22.49 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.7
Q ss_pred ccceeeeeeHHhHhhhcCccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSN 47 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde 47 (118)
+-|..+.++++.+.+||||+.
T Consensus 163 ~~G~~~~~r~~~l~~vgg~~~ 183 (191)
T cd06436 163 LGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred ECCeeEEEeHHHHHHhhcCCC
Confidence 456788999999999998874
Done!