Query psy15856
Match_columns 118
No_of_seqs 120 out of 721
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:08:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw6_A FI08434P, beta-4-galact 100.0 1.7E-34 6E-39 223.8 5.4 115 1-117 132-252 (287)
2 2fy7_A Beta-1,4-galactosyltran 99.9 1.1E-26 3.8E-31 179.8 4.7 117 1-117 148-265 (287)
3 1xhb_A Polypeptide N-acetylgal 98.8 8.2E-09 2.8E-13 82.6 5.9 60 25-86 202-261 (472)
4 2d7i_A Polypeptide N-acetylgal 98.8 9.2E-09 3.1E-13 85.1 6.4 60 25-86 282-341 (570)
5 2z86_A Chondroitin synthase; G 98.7 2.5E-08 8.5E-13 82.3 5.6 62 24-87 273-334 (625)
6 2ffu_A Ppgalnact-2, polypeptid 98.6 4.4E-08 1.5E-12 79.2 6.4 56 26-83 235-290 (501)
7 2nxv_A ATP synthase subunits r 98.0 5.4E-06 1.8E-10 61.4 4.1 45 27-74 153-197 (249)
8 3bcv_A Putative glycosyltransf 97.9 1.1E-05 3.8E-10 57.8 4.7 46 29-75 173-219 (240)
9 4fix_A UDP-galactofuranosyl tr 97.7 6E-05 2E-09 63.8 6.1 48 25-74 363-410 (657)
10 2z86_A Chondroitin synthase; G 97.5 0.00012 4.2E-09 60.2 5.7 57 26-87 520-576 (625)
11 1qg8_A Protein (spore coat pol 96.9 0.0005 1.7E-08 49.6 2.5 47 25-74 154-207 (255)
12 4hg6_A Cellulose synthase subu 96.5 0.0024 8.3E-08 54.8 4.6 46 26-74 316-361 (802)
13 3l7i_A Teichoic acid biosynthe 94.4 0.0069 2.4E-07 51.0 0.0 45 27-73 152-197 (729)
14 3ckj_A Putative uncharacterize 91.4 0.18 6.2E-06 38.2 4.0 44 26-74 212-257 (329)
15 3f1y_A Mannosyl-3-phosphoglyce 82.5 0.76 2.6E-05 36.2 2.7 46 24-74 255-302 (387)
16 4bby_A Alkyldihydroxyacetoneph 27.2 11 0.00037 31.6 -0.5 13 48-60 92-104 (658)
17 2bo4_A Mannosylglycerate synth 22.9 40 0.0014 26.5 2.1 46 28-74 163-210 (397)
18 1gwm_A NCP1, non-catalytic pro 22.7 19 0.00064 24.5 0.1 11 43-53 15-27 (153)
19 1wcu_A CBM29_1, non-catalytic 21.0 21 0.00073 24.3 0.1 11 43-53 14-26 (153)
No 1
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-34 Score=223.79 Aligned_cols=115 Identities=32% Similarity=0.564 Sum_probs=105.7
Q ss_pred CCCCCC--CCcceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCC-Ce
Q psy15856 1 MLSCPP--MPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP-QL 77 (118)
Q Consensus 1 ~Y~c~~--~p~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~-~~ 77 (118)
+|.|++ +|+|+|+ ++++|++||..++||++++++++|.+||||||.|||||+||+||..||..+|+++.|++. .+
T Consensus 132 ~Y~c~~~~~P~Hls~--~~~~~~~~Y~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~~~~ 209 (287)
T 3lw6_A 132 LYEYPSSLGPLHIAG--PKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKT 209 (287)
T ss_dssp CCCCCCTTCCEESSC--TTTCSSCCCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSSCCC
T ss_pred cccCCCCCCceEEee--ccccCCCCcCCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCCccc
Confidence 599987 9999997 489999999999999999999999999999999999999999999999999999999985 79
Q ss_pred eeEEeecCCCCCCC---CcHHHHHHHHhcCccccccccccccc
Q psy15856 78 GRYKMMKHHKRVPL---TTVVKKKLLMTSKRRYRLDGENSFLL 117 (118)
Q Consensus 78 g~y~~l~H~~~~~~---~n~~r~~~l~~~~~~~~~dGl~~l~~ 117 (118)
|+|.|+.|.+++.+ .+++++++++.+++|+..||||||+|
T Consensus 210 gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~dGLnsl~Y 252 (287)
T 3lw6_A 210 GTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNVKY 252 (287)
T ss_dssp CTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSSCSGGGCCE
T ss_pred cceeEEeccccccccCCcccchhhhhhhhcEEccCCCCeeeEE
Confidence 99999998776543 45668888899999999999999998
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.93 E-value=1.1e-26 Score=179.80 Aligned_cols=117 Identities=36% Similarity=0.699 Sum_probs=102.8
Q ss_pred CCCCCCCCcceeeeccccCCCCCCCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeE
Q psy15856 1 MLSCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRY 80 (118)
Q Consensus 1 ~Y~c~~~p~h~~~~~d~~~y~~~~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y 80 (118)
+|.|...|+|++...++++|+.||...+||+++++|++|.+||||||.|+|||+||.||+.||..+|+++.+++...++|
T Consensus 148 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~ 227 (287)
T 2fy7_A 148 AYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTT 227 (287)
T ss_dssp CCSCCSSCEECCCEEGGGTTSCSSTTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEE
T ss_pred eEecCCCCceEEEeecccccCCCcCceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCccccee
Confidence 47898899999999999999999999999999999999999999999999999999999999999999999988657899
Q ss_pred EeecCCCCCCC-CcHHHHHHHHhcCccccccccccccc
Q psy15856 81 KMMKHHKRVPL-TTVVKKKLLMTSKRRYRLDGENSFLL 117 (118)
Q Consensus 81 ~~l~H~~~~~~-~n~~r~~~l~~~~~~~~~dGl~~l~~ 117 (118)
.|++|.++..+ +|+++++++.+.+++|+.+||+++.|
T Consensus 228 ~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~~y 265 (287)
T 2fy7_A 228 RHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTY 265 (287)
T ss_dssp EECC---------CCCCCCCHHHHHHHTTTSSGGGCCC
T ss_pred EEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccCce
Confidence 99999987655 78888888888999999999999987
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.77 E-value=8.2e-09 Score=82.63 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=50.8
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHH 86 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~ 86 (118)
+...|++++++|+.|.++|||||.|..||+||.||+.|++.+|.++...+ .....|+.+.
T Consensus 202 ~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p--~~~v~H~~~~ 261 (472)
T 1xhb_A 202 PTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT--CSHVGHVFRK 261 (472)
T ss_dssp SBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE--EEEEEEEC--
T ss_pred ccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc--CcEEEEEccC
Confidence 34678999999999999999999999999999999999999999999887 3445555443
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.77 E-value=9.2e-09 Score=85.12 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=52.4
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHH 86 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~ 86 (118)
+...|++++++|+.|.+|||||+.|..||+||.||+.|++.+|.++...+ .....|+.|.
T Consensus 282 ~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p--~~~v~H~~r~ 341 (570)
T 2d7i_A 282 PVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIP--CSRVGHIYRK 341 (570)
T ss_dssp SSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEE--EEEEEECCCS
T ss_pred ccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEcc--CeEEEEEccc
Confidence 34679999999999999999999999999999999999999999999888 3455666543
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.65 E-value=2.5e-08 Score=82.26 Aligned_cols=62 Identities=18% Similarity=0.379 Sum_probs=53.3
Q ss_pred CCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCC
Q psy15856 24 YNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87 (118)
Q Consensus 24 ~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~ 87 (118)
+....|++++++|+.|.++||||+.|..||+||.||+.|+..+|.++...+. ....|..|..
T Consensus 273 ~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~--~~v~H~~~~~ 334 (625)
T 2z86_A 273 FRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEG--AMAYHQEPPG 334 (625)
T ss_dssp GGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGG--GCEEEECCC-
T ss_pred eeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEccc--chhhccCCcc
Confidence 3457899999999999999999999999999999999999999999998883 4555665553
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.63 E-value=4.4e-08 Score=79.23 Aligned_cols=56 Identities=27% Similarity=0.463 Sum_probs=49.9
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEee
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMM 83 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l 83 (118)
...|++++++|+.|.++|||||.|..||+||.||..|++.+|.++..++ .....|+
T Consensus 235 ~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p--~~~v~H~ 290 (501)
T 2ffu_A 235 MIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP--CSRVGHV 290 (501)
T ss_dssp SCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE--EEEEEEC
T ss_pred cccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc--CcEEEEE
Confidence 4678999999999999999999999999999999999999999999877 3445555
No 7
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.97 E-value=5.4e-06 Score=61.41 Aligned_cols=45 Identities=16% Similarity=-0.022 Sum_probs=40.6
Q ss_pred ccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
..|+++.++|+. ++||||.+.||..||.||+.|+..+|.++..++
T Consensus 153 ~~g~~~~~rr~~---~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~p 197 (249)
T 2nxv_A 153 LDECFLLMRRLK---PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAID 197 (249)
T ss_dssp ECTTEEEEETTB---CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEECC
T ss_pred eeeEeeEEEHhh---hCCCCCCCCCcceehhHHHHHHHHcCCeEEEec
Confidence 457889999988 889999999999999999999999999998775
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=97.91 E-value=1.1e-05 Score=57.80 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=40.7
Q ss_pred ceeeeeeHHhHhhhc-CccCCCcccCcccHHHHHHHHhCCCeEEccCC
Q psy15856 29 GGVFIIRTEHFLRVN-GYSNLYWGWGGEDDDMGFRVLQLGLKITRPLP 75 (118)
Q Consensus 29 Gg~~~~~~~~f~~vn-Gfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~ 75 (118)
|++++++|+.|.++| ||++.+. +..||.||..|+..+|.++...+.
T Consensus 173 ~~~~~~rr~~~~~~g~~f~~~~~-~~~eD~~~~~r~~~~g~~i~~~~~ 219 (240)
T 3bcv_A 173 AKVVLYRRNLIEKKHLRFVSERI-LPSEDLIFNVDVLANSNIVCVLPQ 219 (240)
T ss_dssp CSCEEEEHHHHHHTTCCCCCTTT-CTTHHHHHHHHHHTTCSCEEECC-
T ss_pred hhheeeeHHHHHHcCCccCCCCC-ccCCCHHHHHHHHHhCCEEEEECC
Confidence 688999999999999 9999875 345999999999999999998883
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=97.67 E-value=6e-05 Score=63.77 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=41.8
Q ss_pred CCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 25 NNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....|++++++++.|.+||||++.|. ++ ||.||+.|+..+|.++...+
T Consensus 363 ~~~~g~~~lirr~v~~~vGgfd~~F~-~~-ED~Dl~lR~~~~G~ki~~~p 410 (657)
T 4fix_A 363 DYNGWWTCMIPRQVAEELGQPLPLFI-KW-DDADYGLRAAEHGYPTVTLP 410 (657)
T ss_dssp SBCCTTEEEEEHHHHHHHCSCCSCSS-SS-HHHHHHHHHHHTTCCEEEEE
T ss_pred cccchhHhHhhHHHHHHhCCChhHhc-cC-cHHHHHHHHHHcCCeEEEEC
Confidence 34667899999999999999996554 44 99999999999999999877
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.51 E-value=0.00012 Score=60.17 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.4
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccCCCeeeEEeecCCC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~~~~g~y~~l~H~~ 87 (118)
...|+.+.++++.|.++||||+.|. ..||.||..|+..+| ++..++. ..+.+..|..
T Consensus 520 ~~~~~~~~~~r~~~~~~ggfd~~~~--~~eD~dl~~r~~~~g-~~~~~~~--~~~~~r~h~~ 576 (625)
T 2z86_A 520 MICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKLSEVG-PFKHINK--ICYNRVLHGE 576 (625)
T ss_dssp CCCCSCEEEEHHHHTTTTCCCSSCS--SCHHHHHHHHHTTTS-CEEEEEE--EEEEEECC--
T ss_pred ccCCceEEEEHHHHHHhCCCCCccC--ChHHHHHHHHHHHhC-CEEEeCC--cEEEEEECCC
Confidence 3567788999999999999999986 459999999999999 8887772 2344444543
No 11
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.85 E-value=0.0005 Score=49.58 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=38.8
Q ss_pred CCccceeeeeeHHhHhhhc-Cc------cCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 25 NNLVGGVFIIRTEHFLRVN-GY------SNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 25 ~~~~Gg~~~~~~~~f~~vn-Gf------de~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
....|++++++|+.|.++| || ++.+ +.+||.||..|+...| ++...+
T Consensus 154 ~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~--~~~eD~~~~~r~~~~g-~~~~~~ 207 (255)
T 1qg8_A 154 CAIDHCSVMHRYSVLEKVKEKFGSYWDESPAF--YRIGDARFFWRVNHFY-PFYPLD 207 (255)
T ss_dssp TTSCGGGEEEETHHHHHHHHHHSSSSCCCGGG--STTHHHHHHHHHTTTC-CBEEEE
T ss_pred CCCccceEEEEHHHHHhhcccccccccCCccc--chHHHHHHHHHHHHhC-CEEEec
Confidence 3466889999999999999 99 5555 5679999999999988 566655
No 12
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=96.48 E-value=0.0024 Score=54.81 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=41.7
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
...|++++++|+.+.++|||++...+ ||.|+..|+...|.++...+
T Consensus 316 ~~~G~~~~~Rr~al~~vGgf~~~~~~---ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 316 FFCGSAAVLRRRALDEAGGFAGETIT---EDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp CCCSSSEEEEHHHHHHHTTCCCSSSS---HHHHHHHHHHTTTCCEEECC
T ss_pred eecccchhhhHHHHHHcCCcCCCCcc---hHHHHHHHHHHcCCeEEEec
Confidence 35789999999999999999987753 99999999999999998877
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=94.43 E-value=0.0069 Score=51.02 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=0.0
Q ss_pred ccceeeeeeHHhHhhhc-CccCCCcccCcccHHHHHHHHhCCCeEEcc
Q psy15856 27 LVGGVFIIRTEHFLRVN-GYSNLYWGWGGEDDDMGFRVLQLGLKITRP 73 (118)
Q Consensus 27 ~~Gg~~~~~~~~f~~vn-Gfde~~~GwG~ED~d~~~Rl~~~g~~i~r~ 73 (118)
..+++++++|+.+.++| |||+.+. .+||.||..|+..+|.++..+
T Consensus 152 ~~~~~~~~rr~~l~~~gl~fde~~~--~~ED~d~~~rl~~~g~~i~~~ 197 (729)
T 3l7i_A 152 QSACNIIFRTAIVRAHHIRFNENLN--TYVDWSFVLEYMKYVNKFVRI 197 (729)
T ss_dssp ------------------------------------------------
T ss_pred cchhheeeeHHHHHHcCCCcCCCCC--cccCHHHHHHHHHhcCCEEEe
Confidence 45788999999999999 9999983 269999999999999999888
No 14
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=91.40 E-value=0.18 Score=38.18 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=34.8
Q ss_pred CccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHHHh-CCCe-EEccC
Q psy15856 26 NLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQ-LGLK-ITRPL 74 (118)
Q Consensus 26 ~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl~~-~g~~-i~r~~ 74 (118)
...||.++++|+.|.+++ |+++| + ||.|+..|+.. .|+. +..++
T Consensus 212 ~~~~g~~~~rr~~l~~i~-f~~~~---~-~D~~l~~r~~~~~g~~~i~~v~ 257 (329)
T 3ckj_A 212 QPLGGEYAATRELLTSVP-FAPGY---G-VEIGLLVDTFDRLGLDAIAQVN 257 (329)
T ss_dssp CTTCSCEEEEHHHHTTSC-BCCGG---G-HHHHHHHHHHHHHCGGGEEEEE
T ss_pred CCCccceeeeHHHHHhCC-CCCCC---c-ccHHHHHHHHHhcCCccEeeec
Confidence 456788999999999996 98754 4 99999999986 6764 55444
No 15
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=82.46 E-value=0.76 Score=36.18 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=36.6
Q ss_pred CCCccceeeeeeHHhHhhhcCccCCCcccCcccHHHHHHH-HhCCCe-EEccC
Q psy15856 24 YNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRV-LQLGLK-ITRPL 74 (118)
Q Consensus 24 ~~~~~Gg~~~~~~~~f~~vnGfde~~~GwG~ED~d~~~Rl-~~~g~~-i~r~~ 74 (118)
.....+|..+++|+.+.++ +|++ ||| +|.|+..++ ...|++ |..++
T Consensus 255 ~~d~~sG~~a~rR~~l~~i-~f~~---gyg-~e~ell~~~~~~~G~~~I~eVp 302 (387)
T 3f1y_A 255 FVQPLAGEFVADRELFCSI-PFLT---GYA-VETGIMIDVLKKVGLGAMAQVD 302 (387)
T ss_dssp CSCTTCSCEEEEHHHHTTS-CEEC---STT-HHHHHHHHHHHHHCGGGEEEEE
T ss_pred ccccccccEEEEHHHHHhC-CCCC---Ccc-hHHHHHHHHHHhcCCCeEEEEe
Confidence 3445689999999999999 7975 566 788898887 456987 88766
No 16
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.20 E-value=11 Score=31.57 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=10.4
Q ss_pred CCcccCcccHHHH
Q psy15856 48 LYWGWGGEDDDMG 60 (118)
Q Consensus 48 ~~~GwG~ED~d~~ 60 (118)
.++|||.+|.+|.
T Consensus 92 ~w~gwg~~~~~~~ 104 (658)
T 4bby_A 92 KWNGWGYNDSKFF 104 (658)
T ss_dssp CTTSSSBTTCCEE
T ss_pred eecccCccccccc
Confidence 5779999997763
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=22.94 E-value=40 Score=26.47 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=35.6
Q ss_pred cceeeeeeHHhHhhhcCcc--CCCcccCcccHHHHHHHHhCCCeEEccC
Q psy15856 28 VGGVFIIRTEHFLRVNGYS--NLYWGWGGEDDDMGFRVLQLGLKITRPL 74 (118)
Q Consensus 28 ~Gg~~~~~~~~f~~vnGfd--e~~~GwG~ED~d~~~Rl~~~g~~i~r~~ 74 (118)
.+|-.+++|+.+.++.... ....||| .|.++..++...|++|..++
T Consensus 163 ~sG~~a~~R~vl~~l~~~~~~~~~~~fg-~eiel~~~a~~~G~rI~EVp 210 (397)
T 2bo4_A 163 LGGELLMRREVAAMLYEDERVRRRSDWG-IDTLYTFVTVQQGVSIYECY 210 (397)
T ss_dssp TCCCEEEEHHHHHHHHHCHHHHTCCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred CcccEEEeHHHHHHHhhhcccCcCCCcc-hHHHHHHHHHHcCCEEEEEE
Confidence 4677899999999984321 1344676 69999999999999998766
No 18
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=22.67 E-value=19 Score=24.54 Aligned_cols=11 Identities=64% Similarity=1.715 Sum_probs=5.9
Q ss_pred cCccCCC--cccC
Q psy15856 43 NGYSNLY--WGWG 53 (118)
Q Consensus 43 nGfde~~--~GwG 53 (118)
.|.+++| ||||
T Consensus 15 ~~L~~G~DNWGW~ 27 (153)
T 1gwm_A 15 SGLPNGYDNWGWG 27 (153)
T ss_dssp SSSCTTEEECCBS
T ss_pred CcCCCCccccccC
Confidence 3444555 5666
No 19
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=20.96 E-value=21 Score=24.26 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=5.7
Q ss_pred cCccCCC--cccC
Q psy15856 43 NGYSNLY--WGWG 53 (118)
Q Consensus 43 nGfde~~--~GwG 53 (118)
.|.+++| ||||
T Consensus 14 ~~L~~G~DNWGW~ 26 (153)
T 1wcu_A 14 KKLNSGFDNWGWD 26 (153)
T ss_dssp SSCCTTEEECCBS
T ss_pred CcCCCCccccccC
Confidence 3444454 5666
Done!