RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15856
(118 letters)
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 99 bits (248), Expect = 6e-27
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 3 SCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFR 62
C PRH+SVA+D G+ LPY GGV + + FL +NG+ N YWGWGGEDDD+ R
Sbjct: 150 RCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNR 209
Query: 63 VLQLGLKITRPLPQLGRYKMMKH-HKRVPLTTVVKKKLLMTSKRRYRLDGENS 114
++ G+ I+RP +G + ++H + + + +K DG NS
Sbjct: 210 LVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNS 262
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 96.4 bits (239), Expect = 1e-25
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 4 CPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRV 63
P L +A L K Y+N VGG+ ++R EHF ++NG SN YWGWG EDD+ R+
Sbjct: 135 YPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRI 194
Query: 64 LQLGLKITRPLP-QLGRYKMMKHHKRVPLTTVVKKK---LLMTSKRRYRLDGENS 114
GL++TRP + G H +K +++R G ++
Sbjct: 195 RDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDN 249
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 44.5 bits (105), Expect = 1e-06
Identities = 14/78 (17%), Positives = 26/78 (33%)
Query: 3 SCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFR 62
S H + P+ GG + R + + WGGED++ G+R
Sbjct: 252 SVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 311
Query: 63 VLQLGLKITRPLPQLGRY 80
+ + G + +
Sbjct: 312 LYREGCYFRSVEGAMAYH 329
Score = 32.2 bits (73), Expect = 0.027
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 21 KLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLG 67
KL + + + G++ D DM ++ ++G
Sbjct: 515 KLTSAMICHHFRMFTARAWNLTEGFNESI--SNAVDYDMYLKLSEVG 559
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 40.9 bits (95), Expect = 3e-05
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70
+ GG+F++ +F + Y + WGGE+ ++ FRV Q G +
Sbjct: 236 IAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSL 279
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 39.4 bits (91), Expect = 8e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 29 GGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70
GG+F + + F + GY WGGE ++ F+V G ++
Sbjct: 286 GGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRM 327
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 38.6 bits (89), Expect = 2e-04
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70
+ GG+F I ++F + Y WGGE+ ++ FR+ Q G +
Sbjct: 204 MAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTL 247
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa
GST, TRX domain, GSH binding, detoxification, APO form;
1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Length = 234
Score = 29.0 bits (65), Expect = 0.31
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 39 FLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHHK 87
V+G +++ +G D M LG K P+P ++++HH
Sbjct: 187 VAHVDGQTHMLFG----SDRMELLAHLLGEKWMGPIPPAVNARLLEHHH 231
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside
deacetylase (MSHB); rossmann fold, zinc aminohydrolase;
HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP:
c.134.1.1 PDB: 1q7t_A*
Length = 303
Score = 26.1 bits (57), Expect = 2.8
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 11 LSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDD 57
+ V L NNL + EH++ G + G E D
Sbjct: 248 VVVGPTGRAAALS-NNLALPIL--ADEHYVLAGGSAGARDERGWETD 291
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 25.4 bits (55), Expect = 4.6
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 27 LVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70
+ F++ +N Y G+ D+ + LG +
Sbjct: 152 SLDECFLLMRRLKPVLNSY--DMQGFHYYGADLCLQAEFLGGRA 193
>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase
superfamily fold, D-glucarate dehydratase, D-glucara
isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes}
PDB: 3n6j_A 3n6h_A*
Length = 455
Score = 24.8 bits (54), Expect = 9.4
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 45 YSNLYWGWGGEDDDMGFRVLQLGLKITRPLPQLGRYKMMKHH 86
+ G +D + + G K R P + R HH
Sbjct: 413 ELHKKLPNGARNDAIPMQFYYPGWKFDRKRPAMVREGHHHHH 454
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 24.8 bits (55), Expect = 9.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 57 DDMGFRVL-QLGLKITRPLPQLGRYKMMKHHKRVPLTT 93
+ +R+ Q GL + P L VPLT
Sbjct: 194 TGLAYRIAEQFGLPVVETRPAL-----------VPLTL 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.452
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,897,138
Number of extensions: 102687
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 17
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)