RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15856
         (118 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score =  109 bits (273), Expect = 3e-31
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 3   SCPPMPRHLSVAVDSLGYKLPYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFR 62
            C   PRH+SVA+D  G+ LPY    GGV  +  + FL +NG+ N YWG GGEDDD+  R
Sbjct: 134 RCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNR 193

Query: 63  VLQLGLKITRPLPQLGRYKMMKHHKRVPLTTVVKK-KLLMTSKRRYRLDGENS 114
           +   G+ ++RP   +G+ +M++H +        ++   +  +K     DG NS
Sbjct: 194 LAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNS 246


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 23  PYNNLVGGVFIIRTEHFLRVNGYSNLYWGWGGEDDDMGFRVLQLGLKI 70
               + GG+F I  ++F  +  Y      WGGE+ ++ FR+ Q G  +
Sbjct: 193 RTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTL 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.452 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,768
Number of extensions: 20142
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)