BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15857
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
Length = 272
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Query: 5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
+ + + + I I + AE D++DADC ++AVLTHGE G+L+AKD YKP NLW FTA
Sbjct: 73 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 132
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 133 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 189
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 339 KPYHDPEFKVIQNAIDE 355
+ + + + I I +
Sbjct: 73 TVFPNLKSEEINKFIQQ 89
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + + + I I +
Sbjct: 73 TVFPNLKSEEINKFIQQ 89
>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1
pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1
Length = 310
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 132/177 (74%), Gaps = 1/177 (0%)
Query: 5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 41 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
+ + + + I I + AE D++DADC ++AVLT GE G+L+AKD YKP NLW FTA
Sbjct: 101 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTA 160
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 217
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 250 ESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHF 309
+ TNG G DEGD LG N + VA+ V+++A YY M+HKHRG+A+IFNHEHF
Sbjct: 17 KQRTNG---GGDEGDALGSN--SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHF 71
Query: 310 DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
D LKSR GT D +NL L LGF V + + + + I I +
Sbjct: 72 DIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQ 117
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 41 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + + + I I +
Sbjct: 101 TVFPNLKSEEINKFIQQ 117
>pdb|3SIR|A Chain A, Crystal Structure Of Drice
pdb|3SIR|B Chain B, Crystal Structure Of Drice
pdb|3SIR|C Chain C, Crystal Structure Of Drice
pdb|3SIR|D Chain D, Crystal Structure Of Drice
Length = 259
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 128/176 (72%), Gaps = 3/176 (1%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 68 HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
D +K I I+ +A Q+++D+DC ++A+L+HGE G ++AKD YK N+WS FTA++C
Sbjct: 64 KDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTI 180
+LAGKPKLFFIQACQGD+LD GVT+ +T+ DG S +Y IP+HADFL+AYST+
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTV 179
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 342 HDPEFKVIQNAID 354
D +K I I+
Sbjct: 64 KDCRYKDILRTIE 76
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 421 HDPEFKVIQNAID 433
D +K I I+
Sbjct: 64 KDCRYKDILRTIE 76
>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|C Chain C, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 157
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 68 HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
D +K I I+ AA Q+++D+DC ++A+L+HGE G ++AKD YK N+WS FTA++C
Sbjct: 64 KDCRYKDILRTIEYAASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI-RTQVD 158
+LAGKPKLFFIQACQGD+LD GVT+ R+Q +
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTE 155
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 342 HDPEFKVIQNAID 354
D +K I I+
Sbjct: 64 KDCRYKDILRTIE 76
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 421 HDPEFKVIQNAID 433
D +K I I+
Sbjct: 64 KDCRYKDILRTIE 76
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 170
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
D C TL KPKLFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYS
Sbjct: 171 DRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 226
Query: 179 TI 180
T+
Sbjct: 227 TV 228
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 153
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 339 KPYHDPEFKVIQNAI 353
Y+D +Q+ +
Sbjct: 111 IVYNDCSCAKMQDLL 125
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 86 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 145
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
D C TL KPKLFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYS
Sbjct: 146 DRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 201
Query: 179 TI 180
T+
Sbjct: 202 TV 203
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 86 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 128
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 339 KPYHDPEFKVIQNAIDEG 356
Y+D +Q+ + +
Sbjct: 86 IVYNDCSCAKMQDLLKKA 103
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 94 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 212
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 94 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 212
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 11/171 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F D C TL KPK
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 123
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
LFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYST+
Sbjct: 124 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 170
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIY 95
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 350 QNAI 353
Q+ +
Sbjct: 64 QDLL 67
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 15 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 74
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 75 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 134
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 135 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 193
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 15 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 71
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 15 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 71
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 72 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 70
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 71 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 130
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 131 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 189
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 72 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 72 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQAC+G++ D V VD ++ Y++P ADFLM YS
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 168
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ-----VDGHPSNTYSIPLHADFLMAYST 179
D C TL KPKLFFIQAC+G +LD G+ D +P Y IP+ ADFL AYST
Sbjct: 169 DRCKTLLEKPKLFFIQACRGTELDDGIQADMSGPINDTDANP--CYKIPVEADFLFAYST 226
Query: 180 I 180
+
Sbjct: 227 V 227
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 151
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 339 KPYHDPEFKVIQNAI 353
Y+D +Q+ +
Sbjct: 109 IVYNDCSCAKMQDLL 123
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F C TL KPK
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
LFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYST+
Sbjct: 130 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 176
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIY 101
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 350 QNAIDEG 356
Q+ + +
Sbjct: 70 QDLLKKA 76
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F C TL KPK
Sbjct: 71 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 130
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
LFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYST+
Sbjct: 131 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 177
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 71 QDLLKKASEEDHTNAACFACILLSHGEENVIY 102
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 350 QNAIDEG 356
Q+ + +
Sbjct: 71 QDLLKKA 77
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 168
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
D C TL KPKLFFIQA +G +LD G+ Q D P N Y IP+ ADFL AYS
Sbjct: 169 DRCKTLLEKPKLFFIQAARGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 224
Query: 179 TI 180
T+
Sbjct: 225 TV 226
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 151
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 49 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 339 KPYHDPEFKVIQNAI 353
Y+D +Q+ +
Sbjct: 109 IVYNDCSCAKMQDLL 123
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 170
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
D TL KPKLFFIQAC+G +LD G+ Q D P N Y IP+ ADFL AYS
Sbjct: 171 DRSKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 226
Query: 179 TI 180
T+
Sbjct: 227 TV 228
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 153
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 51 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 339 KPYHDPEFKVIQNAI 353
Y+D +Q+ +
Sbjct: 111 IVYNDCSCAKMQDLL 125
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 27 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKV 86
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 87 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 146
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQA +G++ D V VD ++ Y++P ADFLM YS
Sbjct: 147 KPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 205
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 251 SHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEH-F 309
S T G +G+D F + M P A+ Y+MDH+ RG+ALIFNHE F
Sbjct: 3 SMTGGQQMGRDPNSA----FYKREMFDP---------AEKYKMDHRRRGIALIFNHERFF 49
Query: 310 DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADY 369
L R GT AD +NL +LGF VK ++D + + + I E + DAD
Sbjct: 50 WHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKVEELLLKIHE---VSTVSHADADC 106
Query: 370 Y 370
+
Sbjct: 107 F 107
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 425
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 27 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKV 86
Query: 426 KVIQNAIDE 434
+ + I E
Sbjct: 87 EELLLKIHE 95
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 3 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 62
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 63 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 122
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
D C TL KPKLFFIQA +G +LD G+ Q D P N Y IP+ ADFL AYS
Sbjct: 123 DRCKTLLEKPKLFFIQAARGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 178
Query: 179 TI 180
T+
Sbjct: 179 TV 180
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 3 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 62
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 63 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 105
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 3 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 62
Query: 339 KPYHDPEFKVIQNAIDEG 356
Y+D +Q+ + +
Sbjct: 63 IVYNDCSCAKMQDLLKKA 80
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 14 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 73
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 74 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 133
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
KPK+F IQA +G++ D V VD ++ Y++P ADFLM YS
Sbjct: 134 KPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 192
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 14 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 70
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 14 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 70
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 9/165 (5%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F D C TL KPK
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 123
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTI 180
LFFIQAC+G +L G+ Q D Y IP+ ADFL AYST+
Sbjct: 124 LFFIQACRGTELADGI----QADSR----YKIPVEADFLFAYSTV 160
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIY 95
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 350 QNAIDEG 356
Q+ + +
Sbjct: 64 QDLLKKA 70
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199
>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
pdb|3H0E|B Chain B, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
Length = 255
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(Pro)caspase-3
Length = 250
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIATDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|3PD0|A Chain A, Caspase-3 E246a
Length = 250
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD+G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDSGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3
Length = 250
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
pdb|1CP3|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
Length = 277
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 199
>pdb|2J33|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|3PD1|A Chain A, Caspase-3 K242a
Length = 250
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant
Length = 250
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 11/171 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F D TL KPK
Sbjct: 71 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPK 130
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
LFFIQAC+G +LD G+ Q D P N Y P+ ADFL AYST+
Sbjct: 131 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKAPVEADFLFAYSTV 177
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 71 QDLLKKASEEDHTNAACFACILLSHGEENVIY 102
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 11 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 350 QNAI 353
Q+ +
Sbjct: 71 QDLL 74
>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMQ|B Chain B, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMS|A Chain A, Caspase-3 Tethered To Irreversible Inhibitor
pdb|1NMS|B Chain B, Caspase-3 Tethered To Irreversible Inhibitor
Length = 249
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171
>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of
Unliganded Human Caspase-3
Length = 257
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171
>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199
>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(pro)caspase-3
Length = 250
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTALDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 11/171 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F C TL KPK
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
LFFIQA +G +LD G+ Q D P N Y IP+ ADFL AYST+
Sbjct: 130 LFFIQAARGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 176
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIY 101
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 350 QNAIDEG 356
Q+ + +
Sbjct: 70 QDLLKKA 76
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199
>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199
>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHK|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQAC+G +LD G+ + VD + + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199
>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
Length = 249
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
LF IQA +G +LD G+ + VD + + IP+ ADFL AYST
Sbjct: 129 LFIIQAXRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171
>pdb|3P45|A Chain A, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|C Chain C, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|E Chain E, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|G Chain G, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|I Chain I, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|K Chain K, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|M Chain M, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|O Chain O, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 179
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 94 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVD 158
KPK+F IQAC+G++ D V VD
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVD 179
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 34 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90
>pdb|1I4E|B Chain B, Crystal Structure Of The Caspase-8P35 COMPLEX
pdb|2FUN|B Chain B, Alternative P35-Caspase-8 Complex
pdb|2FUN|D Chain D, Alternative P35-Caspase-8 Complex
Length = 258
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
+LAGKPK+FFIQACQGD G+ + T + P T IP ADFL+ +T
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMAT 184
Query: 180 ISDS 183
+++
Sbjct: 185 VNNC 188
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 370 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 421
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 422 DP------EFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY 455
D E I +D L H +K G+ Y
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK-GIIY 103
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 291 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 342
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 343 D 343
D
Sbjct: 65 D 65
>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|C Chain C, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 157
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFNDLKA 71
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 72 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVD 158
KPK+F IQAC+G++ D V VD
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVD 157
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFND 68
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 12 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFND 68
>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|C Chain C, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|E Chain E, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|G Chain G, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 156
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 14 ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D +
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 70
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
+ + I E + + DADCFV L+HGE ++A D + + L F D C +L G
Sbjct: 71 EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 130
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVD 158
KPK+F IQAC+G++ D V VD
Sbjct: 131 KPKIFIIQACRGNQHDVPVIPLDVVD 156
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK ++D
Sbjct: 11 AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67
>pdb|3H11|B Chain B, Zymogen Caspase-8:c-Flipl Protease Domain Complex
Length = 271
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 17/184 (9%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+
Sbjct: 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 69
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 70 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 129
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
+LAGKPK+FFIQACQGD G+ + T + P T IP ADFL+ +T
Sbjct: 130 PSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMAT 189
Query: 180 ISDS 183
+++
Sbjct: 190 VNNC 193
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 7 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 86 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 145
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGV 151
D C TL KPKLFFIQAC+G +LD G+
Sbjct: 146 DRCKTLLEKPKLFFIQACRGTELDDGI 172
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 360 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 417
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 418 KPYHDPEFKVIQNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Y+D +Q+ + + + A + L H + ++
Sbjct: 86 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIY 128
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 281 KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 338
K+T ++ Y Y M+ + G +I N+++FD + R GT D E L+ +LGF V
Sbjct: 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 339 KPYHDPEFKVIQNAIDEG 356
Y+D +Q+ + +
Sbjct: 86 IVYNDCSCAKMQDLLKKA 103
>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8
Length = 266
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+
Sbjct: 13 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 72
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 73 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 132
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
+LAGKPK+FFIQA QGD G+ + T + P T IP ADFL+ +T
Sbjct: 133 PSLAGKPKVFFIQAAQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMAT 192
Query: 180 ISDS 183
+++
Sbjct: 193 VNNC 196
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F C TL KPK
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGV 151
LFFIQAC+G +LD G+
Sbjct: 130 LFFIQACRGTELDDGI 145
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 429 QNAIDEGKD------ALIPSLFLPHSNKAGVF 454
Q+ + + + A + L H + ++
Sbjct: 70 QDLLKKASEEDHTNAACFACILLSHGEENVIY 101
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 10 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 350 QNAI 353
Q+ +
Sbjct: 70 QDLL 73
>pdb|1QDU|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|C Chain C, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|E Chain E, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|G Chain G, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|I Chain I, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|K Chain K, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1F9E|A Chain A, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|C Chain C, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|E Chain E, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|G Chain G, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|I Chain I, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|K Chain K, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
Length = 153
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 9/148 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+LAGKPK+FFIQACQGD G+ + T
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGIPVET 152
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 370 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 421
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 422 DP------EFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY 455
D E I +D L H +K G+ Y
Sbjct: 65 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK-GIIY 103
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 291 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 342
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+H
Sbjct: 5 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 343 D 343
D
Sbjct: 65 D 65
>pdb|1I3O|A Chain A, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|C Chain C, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 175
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 97 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGV 151
LF IQA +G +LD G+
Sbjct: 157 LFIIQAARGTELDCGI 172
>pdb|1NME|A Chain A, Structure Of Casp-3 With Tethered Salicylate
pdb|2DKO|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2H5I|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Devd-Cho
pdb|2H5J|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H5J|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H65|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2H65|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2XYG|A Chain A, Caspase-3:cas329306
pdb|2XYH|A Chain A, Caspase-3:cas60254719
pdb|2XYP|A Chain A, Caspase-3:cas26049945
Length = 146
Score = 100 bits (248), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
LF IQAC+G +LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144
>pdb|1PAU|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho
pdb|1GFW|A Chain A, The 2.8 Angstrom Crystal Structure Of Caspase-3 (Apopain
Or Cpp32)in Complex With An Isatin Sulfonamide
Inhibitor.
pdb|1RE1|A Chain A, Crystal Structure Of Caspase-3 With A Nicotinic Acid
Aldehyde Inhibitor
pdb|1RHJ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHJ|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHK|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Phenyl-Propyl- Ketone Inhibitor
pdb|1RHM|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHM|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHQ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHQ|D Chain D, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHR|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Cinnamic Acid Methyl Ester Inhibitor
pdb|1RHU|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A 5,6,7
Tricyclic Peptidomimetic Inhibitor
pdb|2CJX|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-ray Structure Analysis
pdb|2CJY|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2C1E|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2K|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2M|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2O|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2CDR|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNK|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNL|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNN|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|3EDQ|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3EDQ|C Chain C, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3GJQ|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJQ|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3KJF|A Chain A, Caspase 3 Bound To A Covalent Inhibitor
pdb|2CNO|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-peptide Epoxide Inhibitors
Length = 147
Score = 99.4 bits (246), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
LF IQAC+G +LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144
>pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tetrapeptide Inhibitor Ace-Ietd-Aldehyde
pdb|3KJN|A Chain A, Caspase 8 Bound To A Covalent Inhibitor
pdb|3KJQ|A Chain A, Caspase 8 With Covalent Inhibitor
Length = 164
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+
Sbjct: 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 75
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 76 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 135
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+LAGKPK+FFIQACQGD G+ + T
Sbjct: 136 PSLAGKPKVFFIQACQGDNYQKGIPVET 163
>pdb|2C2Z|A Chain A, Crystal Structure Of Caspase-8 In Complex With Aza-Peptide
Michael Acceptor Inhibitor
pdb|2Y1L|A Chain A, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|C Chain C, Caspase-8 In Complex With Darpin-8.4
Length = 159
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP+
Sbjct: 11 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 70
Query: 69 DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT C
Sbjct: 71 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 130
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+LAGKPK+FFIQACQGD G+ + T
Sbjct: 131 PSLAGKPKVFFIQACQGDNYQKGIPVET 158
>pdb|4DCP|A Chain A, Crystal Structure Of Caspase 3, L168f Mutant
pdb|4DCP|D Chain D, Crystal Structure Of Caspase 3, L168f Mutant
Length = 147
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEFDCGI 144
>pdb|4DCO|A Chain A, Crystal Structure Of Caspase 3, L168y Mutant
pdb|4DCO|D Chain D, Crystal Structure Of Caspase 3, L168y Mutant
Length = 147
Score = 97.1 bits (240), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEYDCGI 144
>pdb|4DCJ|A Chain A, Crystal Structure Of Caspase 3, L168d Mutant
pdb|4DCJ|D Chain D, Crystal Structure Of Caspase 3, L168d Mutant
Length = 147
Score = 95.9 bits (237), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 69 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEDDCGI 144
>pdb|2XZD|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZT|A Chain A, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|C Chain C, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2Y0B|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 149
Score = 94.7 bits (234), Expect = 8e-20, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D + I
Sbjct: 11 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 70
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
+ + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GKPK
Sbjct: 71 VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 130
Query: 136 LFFIQACQGDKLDAGV 151
LF IQA +G +LD G+
Sbjct: 131 LFIIQAXRGTELDCGI 146
>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
Length = 284
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 6 AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
A ++ +AD Y + + G LI N+ +F L++R G+ D E L +L F+
Sbjct: 3 ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 62
Query: 64 VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
V+ D K + A+ E A QD+ DC V+ +L+HG G ++ D P
Sbjct: 63 VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 122
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+ + + F +C +L GKPKLFFIQAC G++ D G + +
Sbjct: 123 EKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVAS 162
>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 277
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 6 AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
A ++ +AD Y + + G LI N+ +F L++R G+ D E L +L F+
Sbjct: 2 ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 61
Query: 64 VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
V+ D K + A+ E A QD+ DC V+ +L+HG G ++ D P
Sbjct: 62 VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 121
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+ + + F +C +L GKPKLFFIQAC G++ D G + +
Sbjct: 122 EKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVAS 161
>pdb|3R5J|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R5J|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R6G|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6G|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6L|A Chain A, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R6L|C Chain C, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R7B|A Chain A, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7B|C Chain C, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7N|A Chain A, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7N|C Chain C, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7S|A Chain A, Crystal Structure Of Apo Caspase2
pdb|3R7S|C Chain C, Crystal Structure Of Apo Caspase2
Length = 160
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 19 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 76 QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
Q + A+ + D ++A+L+HG +G ++ D + + ++ F NC +L K
Sbjct: 79 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 138
Query: 134 PKLFFIQACQGDKLDAGV 151
PK+FFIQAC+GD+ D GV
Sbjct: 139 PKMFFIQACRGDETDRGV 156
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 19 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 350 QNAI 353
Q +
Sbjct: 79 QEKL 82
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 19 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 429 QNAI 432
Q +
Sbjct: 79 QEKL 82
>pdb|1PYO|A Chain A, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
pdb|1PYO|C Chain C, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
Length = 167
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 85
Query: 76 QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
Q + A+ + D ++A+L+HG +G ++ D + + ++ F NC +L K
Sbjct: 86 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 145
Query: 134 PKLFFIQACQGDKLDAGV 151
PK+FFIQAC+GD+ D GV
Sbjct: 146 PKMFFIQACRGDETDRGV 163
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 85
Query: 350 QNAI 353
Q +
Sbjct: 86 QEKL 89
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 85
Query: 429 QNAI 432
Q +
Sbjct: 86 QEKL 89
>pdb|3RJM|A Chain A, Caspase2 In Complex With Chdi Ligand 33c
pdb|3RJM|C Chain C, Caspase2 In Complex With Chdi Ligand 33c
Length = 169
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76 QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
Q + A+ + D ++A+L+HG +G ++ D + + ++ F NC +L K
Sbjct: 88 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 134 PKLFFIQACQGDKLDAGV 151
PK+FFIQAC+GD+ D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 350 QNAI 353
Q +
Sbjct: 88 QEKL 91
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 429 QNAI 432
Q +
Sbjct: 88 QEKL 91
>pdb|2P2C|A Chain A, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|C Chain C, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|E Chain E, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|G Chain G, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|I Chain I, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|K Chain K, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76 QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
Q + A+ + D ++A+L+HG +G ++ D + + ++ F NC +L K
Sbjct: 88 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 134 PKLFFIQACQGDKLDAGV 151
PK+FFIQAC+GD+ D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 350 QNAI 353
Q +
Sbjct: 88 QEKL 91
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D + +
Sbjct: 28 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 429 QNAI 432
Q +
Sbjct: 88 QEKL 91
>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|B Chain B, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|C Chain C, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|D Chain D, Crystal Structure Of A Dimeric Caspase-9
Length = 278
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 6 AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
A ++ +AD Y + + G LI N+ +F L++R G+ D E L +L F+
Sbjct: 3 ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 62
Query: 64 VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
V+ D K + A+ E A QD+ DC V+ +L+HG G ++ D P
Sbjct: 63 VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 122
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
+ + + F +C +L GKPKLFFIQA G++ D G + +
Sbjct: 123 EKIVNIFNGTSCPSLGGKPKLFFIQASGGEQKDHGFEVAS 162
>pdb|3D6H|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 29 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + ++S
Sbjct: 87 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFSM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170
>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 29 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG ++GI H++ VP + +++
Sbjct: 87 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIQEGICGKKHSEQVPDILQLNAIFNM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 44 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 101
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 102 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 161
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 162 LNTKNCPSLKDKPKVIIIQACRGD 185
>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 29 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 87 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170
>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-3-
Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2H48|A Chain A, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
pdb|2HBQ|A Chain A, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBY|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4W|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H54|A Chain A, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 28 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 86 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACRGD 169
>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 28 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 86 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACKGD 169
>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|A Chain A, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
Length = 167
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 17 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 74
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 75 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 134
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 135 LNTKNCPSLKDKPKVIIIQACRGD 158
>pdb|3NS7|A Chain A, Succinic Acid Amides As P2-P3 Replacements For Inhibitors
Of Interleukin-1beta Converting Enzyme (Ice Or Caspase
1)
Length = 162
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 12 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 69
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 70 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 129
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC+GD
Sbjct: 130 LNTKNCPSLKDKPKVIIIQACRGD 153
>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 28 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 86 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQAC GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACAGD 169
>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|2FQQ|A Chain A, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
Length = 178
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 28 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 86 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQA +GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQAARGD 169
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11 EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y MD R LALI +E FDS + R G D + L NLG+ V
Sbjct: 45 QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 102
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
+ + ++ A + ++ +D + ++HG +GI H++ VP + +++
Sbjct: 103 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 162
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
NC +L KPK+ IQA +GD
Sbjct: 163 LNTKNCPSLKDKPKVIIIQAARGD 186
>pdb|2FP3|A Chain A, Crystal Structure Of The Drosophila Initiator Caspase
Dronc
Length = 316
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 17 YRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY----HDPE 71
Y+M + +RG+ L+ N + + + R G D ++L L F + PY D
Sbjct: 53 YKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQF 111
Query: 72 FKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP------KNLWSKFTAD 125
FK++ + Q+ +CFVM ++THG + + + V ++ + + F
Sbjct: 112 FKLLTMVTSSSYVQN---TECFVMVLMTHG-NSVEGKEKVEFRDGSVVDMQKIKDHFQTA 167
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAG------------VTIR------TQVDGHPSNTYSI 167
C L KPK+ +GD+ D G T + TQ +G PS + ++
Sbjct: 168 KCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNV 227
Query: 168 PLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMS 208
P AD L+ Y +++P + L D S + K QVM+
Sbjct: 228 PSLADTLVCY---ANTPGYVTHRDL-DTGSWYIQKFCQVMA 264
>pdb|3H11|A Chain A, Zymogen Caspase-8:c-Flipl Protease Domain Complex
pdb|3H13|A Chain A, C-Flipl Protease-Like Domain
Length = 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 4 PVAKSTVEKDA--------DYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYT 55
PV KS E +A + Y+M K G+ LI + G + E L
Sbjct: 15 PVKKSIQESEAFLPQSIPEERYKMKSKPLGICLIID-------------CIGNETELLRD 61
Query: 56 TLVNLGFVVKPYHDPEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKDVPYK 114
T +LG+ V+ + I + + A ++ D D FV +++ G ++ D +
Sbjct: 62 TFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHS 121
Query: 115 PKNL---WSKFTADNCLTLAGKPKLFFIQ 140
L F D+C LAGKPK+FFIQ
Sbjct: 122 GLPLHHIRRMFMGDSCPYLAGKPKMFFIQ 150
>pdb|3SIP|B Chain B, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|D Chain D, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 109
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 159 GHPSNTYSIPLHADFLMAYSTI 180
G S +Y IP+HADFL+AYST+
Sbjct: 1 GDSSMSYKIPVHADFLIAYSTV 22
>pdb|3G9D|A Chain A, Crystal Structure Glycohydrolase
pdb|3G9D|B Chain B, Crystal Structure Glycohydrolase
pdb|3O5T|A Chain A, Structure Of Drag-Glnz Complex With Adp
Length = 297
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 31/181 (17%)
Query: 224 ESHTNGSAVGKDEGDVLG--FKFQTDGHESHT--------NGSAVGKDEGDV-----LGF 268
S G+ +G GD LG +F T G +H G + G V +
Sbjct: 7 RSRALGAYLGLACGDALGATVEFLTKGEIAHQYGVHKHIKGGGWLKLPAGQVTDDTEMSI 66
Query: 269 NFGRTRMKGPV--AKSTVEKDADYYRM------DHKHRGLALIFNHEHFDSPHLKSRAGT 320
+ GR + P A+ E+ A + + D RG+ H P + AG
Sbjct: 67 HLGRAILAAPEWDARRAAEEFAVWLKGVPVDVGDTTRRGIRRFIMHGTLSEPESEYHAGN 126
Query: 321 GADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLA 380
GA NL L LG D F+ + +++ + DA + H R L
Sbjct: 127 GAAMRNLPVALATLG------DDAAFE--RWTVEQAHITHCNAMSDAATLTLGHMVRRLV 178
Query: 381 L 381
L
Sbjct: 179 L 179
>pdb|2EHZ|A Chain A, Anaerobic Crystal Structure Analysis Of
1,2-Dihydroxynaphthalene Dioxygenase From Pseudomonas
Sp. Strain C18 Complexed With 4- Methylcatechol
pdb|2EI0|A Chain A, Anaerobic Crystal Structure Analysis Of
1,2-Dihydroxynaphthalene Dioxygenase From Pseudomonas
Sp. Strain C18 Complexed With 3,4- Dihydroxybiphenyl
pdb|2EI1|A Chain A, Anaerobic Crystal Strucutre Analysis Of The
1,2-Dihydroxynaphthalene Dioxygeanse Of Pseudomonas Sp.
Strain C18 Complexes To 1,2- Dihydroxynaphthalene
pdb|2EI3|A Chain A, Anaerobic Crystal Structure Analysis Of The
1,2-Dihydroxynaphthalene Dioxygenase From Pseudomonas
Sp. Strain C18 Complexes With 2,3- Dihydroxybiphenyl
Length = 302
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 273 TRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLV 332
T M G EKD Y RMD+ H + + N + D +L R +FE L L+
Sbjct: 28 TDMLGLQVLDEGEKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKLI 86
Query: 333 NLGFVVK 339
+ G+ ++
Sbjct: 87 DAGYKIR 93
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 351 NAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTL 410
+DEG EKD Y RMD+ H + + N + D +L R +FE L L
Sbjct: 34 QVLDEG-------EKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKL 85
Query: 411 VNLGFVVK 418
++ G+ ++
Sbjct: 86 IDAGYKIR 93
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 11 EKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVK 65
EKD Y RMD+ H + + N + D +L R +FE L L++ G+ ++
Sbjct: 40 EKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKLIDAGYKIR 93
>pdb|2EI2|A Chain A, Crystal Structure Analysis Of The 1,2-Dihydroxynaphthalene
Dioxygenase From Pseudomonas Sp. Stain C18
Length = 302
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 273 TRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLV 332
T M G EKD Y RMD+ H + + N + D +L R +FE L L+
Sbjct: 28 TDMLGLQVLDEGEKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKLI 86
Query: 333 NLGFVVK 339
+ G+ ++
Sbjct: 87 DAGYKIR 93
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 351 NAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTL 410
+DEG EKD Y RMD+ H + + N + D +L R +FE L L
Sbjct: 34 QVLDEG-------EKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKL 85
Query: 411 VNLGFVVK 418
++ G+ ++
Sbjct: 86 IDAGYKIR 93
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 11 EKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVK 65
EKD Y RMD+ H + + N + D +L R +FE L L++ G+ ++
Sbjct: 40 EKDRFYLRMDYWHHRIVVHHNGQD-DLEYLGWRVAGKPEFEALGQKLIDAGYKIR 93
>pdb|2QL5|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|B Chain B, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|D Chain D, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|B Chain B, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|D Chain D, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|B Chain B, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|D Chain D, Crystal Structure Of Unliganded Caspase-7
Length = 97
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 165 YSIPLHADFLMAYSTI 180
Y IP+ ADFL AYST+
Sbjct: 5 YKIPVEADFLFAYSTV 20
>pdb|1I51|B Chain B, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|D Chain D, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 105
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 158 DGHPSNTYSIPLHADFLMAYSTI 180
D +P Y IP+ ADFL AYST+
Sbjct: 8 DANPR--YKIPVEADFLFAYSTV 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,524,482
Number of Sequences: 62578
Number of extensions: 716414
Number of successful extensions: 1733
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 174
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)