RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15857
(455 letters)
>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE)
homologues; Cysteine-dependent aspartate-directed
proteases that mediate programmed cell death
(apoptosis). Caspases are synthesized as inactive
zymogens and activated by proteolysis of the peptide
backbone adjacent to an aspartate. The resulting two
subunits associate to form an (alpha)2(beta)2-tetramer
which is the active enzyme. Activation of caspases can
be mediated by other caspase homologs.
Length = 243
Score = 194 bits (495), Expect = 2e-59
Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 16 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y+M+ K RGLALI N+E+FD LK R GT D ENL +LG+ V+ ++ + I
Sbjct: 1 IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKD-VPYKPKNLWSKFTADNCLTLAGKP 134
+ E A D++D+D FV +L+HGE+G ++ D + S F DNC +LAGKP
Sbjct: 60 LEELKEFASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119
Query: 135 KLFFIQACQGDKLDAGV--------TIRTQVDGHPSNTYSIPLHADFLMAYST 179
KLFFIQAC+GD+LD GV + + +IP+ ADFL+AYST
Sbjct: 120 KLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYST 172
Score = 71.5 bits (176), Expect = 4e-14
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 290 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y+M+ K RGLALI N+E+FD LK R GT D ENL +LG+ V+ ++ + I
Sbjct: 1 IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59
Query: 350 QNAIDEGPVAKSTVEKDAD 368
+ E S D+D
Sbjct: 60 LEELKE---FASPDHSDSD 75
Score = 71.5 bits (176), Expect = 4e-14
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 369 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y+M+ K RGLALI N+E+FD LK R GT D ENL +LG+ V+ ++ + I
Sbjct: 1 IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59
Query: 429 QNAIDE 434
+ E
Sbjct: 60 LEELKE 65
>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme
(ICE) homologues. Cysteine aspartases that mediate
programmed cell death (apoptosis). Caspases are
synthesised as zymogens and activated by proteolysis of
the peptide backbone adjacent to an aspartate. The
resulting two subunits associate to form an
(alpha)2(beta)2-tetramer which is the active enzyme.
Activation of caspases can be mediated by other caspase
homologues.
Length = 241
Score = 189 bits (482), Expect = 2e-57
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 9/174 (5%)
Query: 17 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 76
Y+M+ K RGLALI N+E+F L R GT D ENL +LG+ V+ ++ + +
Sbjct: 1 YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58
Query: 77 NAIDEAAE-QDYTDADCFVMAVLTHGEDGILHAKD-VPYKPKNLWSKFTADNCLTLAGKP 134
+ E A +++D+D FV +L+HGE+G ++ D P ++S F DNC +LAGKP
Sbjct: 59 EELKEFAAMPEHSDSDSFVCVLLSHGEEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKP 118
Query: 135 KLFFIQACQGDKLDAGVTIRTQVDGHPSN-----TYSIPLHADFLMAYSTISDS 183
KLFFIQAC+GD+LD GV + V S Y IP+ ADFL AYST
Sbjct: 119 KLFFIQACRGDELDGGVPVEDSVADPESEGEDDAIYKIPVEADFLAAYSTTPGY 172
Score = 73.0 bits (180), Expect = 1e-14
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 291 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 350
Y+M+ K RGLALI N+E+F L R GT D ENL +LG+ V+ ++ + +
Sbjct: 1 YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58
Query: 351 NAIDEGPVAKSTVEKDAD 368
+ E A D+D
Sbjct: 59 EELKE--FAAMPEHSDSD 74
Score = 71.9 bits (177), Expect = 2e-14
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 370 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 429
Y+M+ K RGLALI N+E+F L R GT D ENL +LG+ V+ ++ + +
Sbjct: 1 YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58
Query: 430 NAIDE 434
+ E
Sbjct: 59 EELKE 63
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain.
Length = 228
Score = 128 bits (324), Expect = 1e-34
Identities = 60/166 (36%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 25 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE 84
GLALI + +F H G D E L L LGF V+ + D + I+ A+ E A
Sbjct: 1 GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALREFA- 57
Query: 85 QDYTDADCFVMAVLTHGEDGILHAKD---VPYKPKNLWSKFTADNCLTLAGKPKLFFIQA 141
D FV+ HG G ++ D VP L F NC +L GKPKLF I A
Sbjct: 58 ARADPGDSFVVVYSGHGVQGEVYGGDGYLVPVD--ALDDVFNGLNCPSLKGKPKLFIIDA 115
Query: 142 CQGDKLDAGV--------TIRTQVDGHPSNTYSIPLHADFLMAYST 179
C+G LD GV + D + IP ADFL+AYST
Sbjct: 116 CRGGPLDDGVKSDSGSSGESESVDDSEAAGLSKIPAPADFLVAYST 161
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 299 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
GLALI + +F H G D E L L LGF V+ + D + I+ A+ E
Sbjct: 1 GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALRE 55
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 378 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 434
GLALI + +F H G D E L L LGF V+ + D + I+ A+ E
Sbjct: 1 GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALRE 55
>gnl|CDD|216210 pfam00949, Peptidase_S7, Peptidase S7, Flavivirus NS3 serine
protease. The viral genome is a positive strand RNA
that encodes a single polyprotein precursor. Processing
of the polyprotein precursor into mature proteins is
carried out by the host signal peptidase and by NS3
serine protease, which requires NS2B (pfam01002) as a
cofactor.
Length = 144
Score = 32.7 bits (75), Expect = 0.16
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 202 KTYQVMSSNVDTSNGECQTDGHE---SHTN------GSAVGKDEGDVLGFKFQTDGHESH 252
+ Q NV T G +TDG+ + GS + G ++G +
Sbjct: 76 EEVQQYVENVQTKPGVFKTDGYGLGLIDLDFPGGSSGSPIFNQNGQIVGLYGNGLVTGNG 135
Query: 253 TNGSAVG 259
T S +
Sbjct: 136 TYVSGIA 142
>gnl|CDD|214740 smart00602, VPS10, VPS10 domain.
Length = 612
Score = 31.2 bits (71), Expect = 1.1
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 124 ADNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNT-YSIPLHADFLMAYSTIS 181
A+ T+ K +F D G + + + P + P H D+++AYS
Sbjct: 45 ANKFKTILVKGYIFISS-------DEGKSFQKFTLPFPPLPSLLYHPKHPDYVLAYSKDC 97
Query: 182 DSPM------FGQRFGL--KDKCSKVVSKTYQVMSSNVDTSNGECQTD 221
+ + FG+ + ++ S S + D + + +
Sbjct: 98 NYKVLYVSKDFGKTWTEIQENVESCEFSWGSMGVYDFPDLVHISVKEN 145
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 30.2 bits (68), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 50 FENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGIL-HA 108
FE Y LVN+ FV P +V+ A ++ D T +C+VM + +GI H
Sbjct: 156 FEKFYQELVNMNFV------PAGRVLYGA---GSKTDVTYFNCYVMPFVKDSREGISEHR 206
Query: 109 KDV 111
K V
Sbjct: 207 KQV 209
>gnl|CDD|227342 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
[Cell envelope biogenesis, outer membrane].
Length = 797
Score = 28.4 bits (64), Expect = 8.8
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 54 YTTLVNLGFVVKPY-----HDPEFKVIQNAIDEAAEQDYTDAD 91
Y N G V+PY D KVI A + D
Sbjct: 571 YAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEA 613
>gnl|CDD|222183 pfam13506, Glyco_transf_21, Glycosyl transferase family 21. This
is a family of ceramide beta-glucosyltransferases -
EC:2.4.1.80.
Length = 171
Score = 27.6 bits (62), Expect = 9.4
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 73 KV--IQNAIDEAAEQDYT---DADCFV--------MAVLTHGEDGILHAKDVPYKPKNLW 119
KV + A+D A D D+D V +A L + G++ +
Sbjct: 18 KVNNLLQALDAKARYDLLVISDSDVRVPPDYLRELLAPLADPKVGLVTGPPYGADRRGFA 77
Query: 120 SKFTADNCLTLAG 132
+ A TLAG
Sbjct: 78 AALEAAFLNTLAG 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,143,734
Number of extensions: 2237490
Number of successful extensions: 1716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1697
Number of HSP's successfully gapped: 18
Length of query: 455
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 355
Effective length of database: 6,502,202
Effective search space: 2308281710
Effective search space used: 2308281710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)