RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15857
(455 letters)
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase
inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP:
c.17.1.1 PDB: 3sip_B
Length = 272
Score = 184 bits (467), Expect = 3e-55
Identities = 105/183 (57%), Positives = 134/183 (73%), Gaps = 1/183 (0%)
Query: 5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
+ + + + I I + AE D++DADC ++AVLTHGE G+L+AKD YKP NLW FTA
Sbjct: 73 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 132
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTISDS 183
D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 133 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGY 192
Query: 184 PMF 186
+
Sbjct: 193 FSW 195
Score = 87.1 bits (215), Expect = 2e-19
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 339 KPYHDPEFKVIQNAIDE 355
+ + + + I I +
Sbjct: 73 TVFPNLKSEEINKFIQQ 89
Score = 87.1 bits (215), Expect = 2e-19
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + + + I I +
Sbjct: 73 TVFPNLKSEEINKFIQQ 89
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Length = 259
Score = 183 bits (464), Expect = 5e-55
Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 3/180 (1%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 68 HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
D +K I I+ +A Q+++D+DC ++A+L+HGE G ++AKD YK N+WS FTA++C
Sbjct: 64 KDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTISDSP 184
+LAGKPKLFFIQACQGD+LD GVT+ +T+ DG S +Y IP+HADFL+AYST+
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTVPGFY 183
Score = 85.6 bits (211), Expect = 4e-19
Identities = 38/74 (51%), Positives = 45/74 (60%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 342 HDPEFKVIQNAIDE 355
D +K I I+
Sbjct: 64 KDCRYKDILRTIEY 77
Score = 85.6 bits (211), Expect = 4e-19
Identities = 38/74 (51%), Positives = 45/74 (60%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
S ++ A Y M HK+RG+ALIFNHEHF+ P LKSRAGT D ENL L L F V Y
Sbjct: 4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 421 HDPEFKVIQNAIDE 434
D +K I I+
Sbjct: 64 KDCRYKDILRTIEY 77
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera
frugiperda}
Length = 310
Score = 184 bits (468), Expect = 6e-55
Identities = 104/184 (56%), Positives = 133/184 (72%), Gaps = 1/184 (0%)
Query: 4 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFV 63
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF
Sbjct: 40 RVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK 99
Query: 64 VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFT 123
V + + + + I I + AE D++DADC ++AVLT GE G+L+AKD YKP NLW FT
Sbjct: 100 VTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFT 159
Query: 124 ADNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTISD 182
AD C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 160 ADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPG 219
Query: 183 SPMF 186
+
Sbjct: 220 YFSW 223
Score = 86.8 bits (214), Expect = 4e-19
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 259 GKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRA 318
G DEGD LG N + VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR
Sbjct: 23 GGDEGDALGSN--SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRT 80
Query: 319 GTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
GT D +NL L LGF V + + + + I I +
Sbjct: 81 GTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQ 117
Score = 84.8 bits (209), Expect = 2e-18
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 357 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFV 416
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF
Sbjct: 40 RVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK 99
Query: 417 VKPYHDPEFKVIQNAIDE 434
V + + + + I I +
Sbjct: 100 VTVFPNLKSEEINKFIQQ 117
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design,
radiation D tetrahedral intermediate, protease; 1.06A
{Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A*
2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A
1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A*
1rhj_A* ...
Length = 146
Score = 168 bits (426), Expect = 8e-51
Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 66
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 67 YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADN 126
+D + I + + +++D++ FV +L+HGE+GI+ + P K + + F D
Sbjct: 60 KNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR 119
Query: 127 CLTLAGKPKLFFIQACQGDKLDAGV 151
C +L GKPKLF IQAC+G +LD G+
Sbjct: 120 CRSLTGKPKLFIIQACRGTELDCGI 144
Score = 74.2 bits (182), Expect = 4e-16
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 340
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 341 YHDPEFKVIQNAIDE 355
+D + I + +
Sbjct: 60 KNDLTREEIVELMRD 74
Score = 74.2 bits (182), Expect = 4e-16
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 419
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 420 YHDPEFKVIQNAIDE 434
+D + I + +
Sbjct: 60 KNDLTREEIVELMRD 74
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen,
hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo
sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A*
3edr_A 3ibc_A 3ibf_A 1i51_A
Length = 173
Score = 167 bits (423), Expect = 4e-50
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 4 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 62
+ + Y M+ + G +I N+++FD + R GT D E L+ +LGF
Sbjct: 24 SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 83
Query: 63 VVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKF 122
V Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 84 DVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHF 143
Query: 123 TADNCLTLAGKPKLFFIQACQGDKLDAGV 151
D C TL KPKLFFIQAC+G +LD G+
Sbjct: 144 RGDRCKTLLEKPKLFFIQACRGTELDDGI 172
Score = 73.9 bits (181), Expect = 1e-15
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
+ + + + Y M+ + G +I N+++FD + R GT D E L+
Sbjct: 17 KKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFK 76
Query: 409 TLVNLGFVVKPYHDPEFKVIQNAID 433
+LGF V Y+D +Q+ +
Sbjct: 77 CFRSLGFDVIVYNDCSCAKMQDLLK 101
Score = 73.2 bits (179), Expect = 2e-15
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 278 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 336
+ + Y M+ + G +I N+++FD + R GT D E L+ +LGF
Sbjct: 24 SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 83
Query: 337 VVKPYHDPEFKVIQNAID 354
V Y+D +Q+ +
Sbjct: 84 DVIVYNDCSCAKMQDLLK 101
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase,
hydrolase-hydrolase inhibitor complex; 1.30A {Homo
sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A
1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A
3itn_A 1qx3_A
Length = 250
Score = 166 bits (421), Expect = 8e-49
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 3/183 (1%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 66
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 67 YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADN 126
+D + I + + +++D++ FV +L+HGE+GI+ + P K + + F D
Sbjct: 60 KNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR 119
Query: 127 CLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMF 186
C +L GKPKLF IQAC+G +LD G+ + VD + IP+ ADFL AYST +
Sbjct: 120 CRSLTGKPKLFIIQACRGTELDCGIATDSGVDD-DMACHKIPVEADFLYAYSTAPGYYSW 178
Query: 187 GQR 189
Sbjct: 179 RNS 181
Score = 74.3 bits (182), Expect = 3e-15
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 340
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 341 YHDPEFKVIQNAIDE 355
+D + I + +
Sbjct: 60 KNDLTREEIVELMRD 74
Score = 74.3 bits (182), Expect = 3e-15
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 419
S + D + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+
Sbjct: 1 SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59
Query: 420 YHDPEFKVIQNAIDE 434
+D + I + +
Sbjct: 60 KNDLTREEIVELMRD 74
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase
INHI complex; 1.60A {Homo sapiens} PDB: 3k7e_A 3s70_A
3v6m_A 3v6l_A 3nr2_A 2wdp_A 3nkf_A 3s8e_A 3qnw_A*
3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Length = 278
Score = 167 bits (423), Expect = 9e-49
Identities = 72/187 (38%), Positives = 100/187 (53%), Gaps = 13/187 (6%)
Query: 7 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 65
K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK
Sbjct: 4 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63
Query: 66 PYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTAD 125
++D + + + I E + + DADCFV L+HGE ++A D + + L F D
Sbjct: 64 CFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGD 123
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDG------------HPSNTYSIPLHADF 173
C +L GKPK+F IQAC+G++ D V VD ++ Y++P ADF
Sbjct: 124 KCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADF 183
Query: 174 LMAYSTI 180
LM YS
Sbjct: 184 LMCYSVA 190
Score = 77.9 bits (191), Expect = 3e-16
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK
Sbjct: 4 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63
Query: 340 PYHDPEFKVIQNAIDE 355
++D + + + I E
Sbjct: 64 CFNDLKAEELLLKIHE 79
Score = 77.9 bits (191), Expect = 3e-16
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 360 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 418
K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK
Sbjct: 4 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63
Query: 419 PYHDPEFKVIQNAIDE 434
++D + + + I E
Sbjct: 64 CFNDLKAEELLLKIHE 79
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A
1qdu_A* 1f9e_A*
Length = 164
Score = 162 bits (411), Expect = 2e-48
Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 59
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 7 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66
Query: 60 LGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE-DGILHAKDVPYKPKNL 118
L F +KP+ D + I + D+++ DCF+ +L+HG+ I L
Sbjct: 67 LHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYEL 126
Query: 119 WSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
S+FT C +LAGKPK+FFIQACQGD G+ + T
Sbjct: 127 TSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVET 163
Score = 71.2 bits (174), Expect = 8e-15
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 333
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 7 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66
Query: 334 LGFVVKPYHDPEFKVIQNAIDE 355
L F +KP+ D + I +
Sbjct: 67 LHFEIKPHDDCTVEQIYEILKI 88
Score = 71.2 bits (174), Expect = 8e-15
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 412
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 7 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66
Query: 413 LGFVVKPYHDPEFKVIQNAIDE 434
L F +KP+ D + I +
Sbjct: 67 LHFEIKPHDDCTVEQIYEILKI 88
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo
sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A
4ehl_A 1i3o_A
Length = 277
Score = 165 bits (418), Expect = 5e-48
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 2/183 (1%)
Query: 6 AKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVV 64
+ + + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V
Sbjct: 26 SMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV 85
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
+ +D + I + + +++D++ FV +L+HGE+GI+ + P K + + F
Sbjct: 86 RNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRG 145
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSP 184
D C +L GKPKLF IQAC+G +LD G+ + VD + IP+ ADFL A ST
Sbjct: 146 DRCRSLTGKPKLFIIQACRGTELDCGIETDSGVD-DDMACHKIPVEADFLYACSTAPGYY 204
Query: 185 MFG 187
+
Sbjct: 205 SWR 207
Score = 72.4 bits (177), Expect = 2e-14
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 342 HDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTG 400
K ++ I G + + + Y+MD+ GL +I N+++F S + SR+GT
Sbjct: 9 DSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTD 68
Query: 401 ADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 434
D NL T NL + V+ +D + I + +
Sbjct: 69 VDAANLRETFRNLKYEVRNKNDLTREEIVELMRD 102
Score = 72.1 bits (176), Expect = 2e-14
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 280 AKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVV 338
+ + + Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V
Sbjct: 26 SMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV 85
Query: 339 KPYHDPEFKVIQNAIDE 355
+ +D + I + +
Sbjct: 86 RNKNDLTREEIVELMRD 102
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase,
apoptosis, hydrolas hydrolase inhibitor complex; 2.35A
{Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A
1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Length = 305
Score = 165 bits (419), Expect = 7e-48
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 3/186 (1%)
Query: 4 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 62
+ + Y M+ + G +I N+++FD + R GT D E L+ +LGF
Sbjct: 49 SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 108
Query: 63 VVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKF 122
V Y+D +Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F
Sbjct: 109 DVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHF 168
Query: 123 TADNCLTLAGKPKLFFIQACQGDKLDAGVTIR--TQVDGHPSNTYSIPLHADFLMAYSTI 180
D TL KPKLFFIQAC+G +LD G+ D + Y IP+ ADFL AYST+
Sbjct: 169 RGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTV 228
Query: 181 SDSPMF 186
+
Sbjct: 229 PGYYSW 234
Score = 76.0 bits (186), Expect = 1e-15
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
+ + + + Y M+ + G +I N+++FD + R GT D E L+
Sbjct: 42 KKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFK 101
Query: 409 TLVNLGFVVKPYHDPEFKVIQNAI 432
+LGF V Y+D +Q+ +
Sbjct: 102 CFRSLGFDVIVYNDCSCAKMQDLL 125
Score = 75.6 bits (185), Expect = 3e-15
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 278 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 336
+ + Y M+ + G +I N+++FD + R GT D E L+ +LGF
Sbjct: 49 SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 108
Query: 337 VVKPYHDPEFKVIQNAI 353
V Y+D +Q+ +
Sbjct: 109 DVIVYNDCSCAKMQDLL 125
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease,
hydrolase-HY inhibitor complex; 1.65A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A
3r7b_A 3r7n_A 3r7s_A
Length = 167
Score = 160 bits (405), Expect = 2e-47
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 11 EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D
Sbjct: 20 THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79
Query: 70 PEFKVIQNAIDEAAE-QDYTDADCFVMAVLTHGE-DGILHAKDVPYKPKNLWSKFTADNC 127
+ +Q + A+ + D ++A+L+HG I + + ++ F NC
Sbjct: 80 QTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANC 139
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI 153
+L KPK+FFIQAC+GD+ D GV
Sbjct: 140 PSLQNKPKMFFIQACRGDETDRGVDQ 165
Score = 76.5 bits (188), Expect = 1e-16
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 285 EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D
Sbjct: 20 THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79
Query: 344 PEFKVIQNAIDEGPVAKSTVEKDAD 368
+ +Q + A+ + D
Sbjct: 80 QTAQEMQEKLQN--FAQLPAHRVTD 102
Score = 76.5 bits (188), Expect = 1e-16
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 364 EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D
Sbjct: 20 THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79
Query: 423 PEFKVIQNAIDE 434
+ +Q +
Sbjct: 80 QTAQEMQEKLQN 91
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive
inhibition, hydrolase; 2.53A {Homo sapiens}
Length = 179
Score = 159 bits (402), Expect = 7e-47
Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 7 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 65
K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK
Sbjct: 27 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 86
Query: 66 PYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTAD 125
++D + + + I E + + DADCFV L+HGE ++A D + + L F D
Sbjct: 87 CFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGD 146
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVD 158
C +L GKPK+F IQAC+G++ D V VD
Sbjct: 147 KCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVD 179
Score = 67.9 bits (165), Expect = 2e-13
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
+N + K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL
Sbjct: 17 ENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTR 76
Query: 409 TLVNLGFVVKPYHDPEFKVIQNAIDE 434
+LGF VK ++D + + + I E
Sbjct: 77 RFSDLGFEVKCFNDLKAEELLLKIHE 102
Score = 67.5 bits (164), Expect = 2e-13
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
K + A+ Y+MDH+ RG+ALIFNHE F L R GT AD +NL +LGF VK
Sbjct: 27 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 86
Query: 340 PYHDPEFKVIQNAIDE 355
++D + + + I E
Sbjct: 87 CFNDLKAEELLLKIHE 102
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization,
active site conformation, hydrolysis/apoptosis complex;
2.50A {Drosophila melanogaster}
Length = 316
Score = 152 bits (385), Expect = 9e-43
Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 26/195 (13%)
Query: 11 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
Y+M + +RG+ L+ N + + R G D ++L L F + PY +
Sbjct: 47 SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105
Query: 70 PEFKVIQNAIDEAAEQDYT-DADCFVMAVLTHG-----EDGILHAKDVPYKPKNLWSKFT 123
+ Y + +CFVM ++THG ++ + + + F
Sbjct: 106 VNQDQFFKLLTMVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQ 165
Query: 124 ADNCLTLAGKPKLFFIQACQGDKLDAGVTIR------------------TQVDGHPSNTY 165
C L KPK+ +GD+ D G TQ +G PS +
Sbjct: 166 TAKCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPSPST 225
Query: 166 SIPLHADFLMAYSTI 180
++P AD L+ Y+
Sbjct: 226 NVPSLADTLVCYANT 240
Score = 69.8 bits (170), Expect = 2e-13
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 285 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
Y+M + +RG+ L+ N + + R G D ++L L F + PY +
Sbjct: 47 SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105
Query: 344 PEFKVIQNAIDEGPVAKSTVEKDAD 368
+ V S+ ++ +
Sbjct: 106 VNQDQFFKLLTM--VTSSSYVQNTE 128
Score = 69.0 bits (168), Expect = 4e-13
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 364 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
Y+M + +RG+ L+ N + + R G D ++L L F + PY +
Sbjct: 47 SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105
Query: 423 PEFKVIQNAIDE 434
+
Sbjct: 106 VNQDQFFKLLTM 117
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing,
HOST- virus interaction, polymorphism, cytoplasm,
disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A
1i4e_B 2fun_B 2c2z_B*
Length = 271
Score = 149 bits (378), Expect = 3e-42
Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 17/197 (8%)
Query: 8 STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 59
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 1 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60
Query: 60 LGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHG-EDGILHAKDVPYKPKNL 118
L F +KP+ D + I + D+++ DCF+ +L+HG + I L
Sbjct: 61 LHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYEL 120
Query: 119 WSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIR--------TQVDGHPSNTYSIPLH 170
S+FT C +LAGKPK+FFIQACQGD G+ + ++ T IP
Sbjct: 121 TSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDE 180
Query: 171 ADFLMAYSTISDSPMFG 187
ADFL+ +T+++ +
Sbjct: 181 ADFLLGMATVNNCVSYR 197
Score = 70.2 bits (171), Expect = 9e-14
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 333
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 1 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60
Query: 334 LGFVVKPYHDPEFKVIQNAIDE 355
L F +KP+ D + I +
Sbjct: 61 LHFEIKPHDDCTVEQIYEILKI 82
Score = 70.2 bits (171), Expect = 9e-14
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 412
S + Y+M K RG LI N+ +F ++ R GT D L TT
Sbjct: 1 SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60
Query: 413 LGFVVKPYHDPEFKVIQNAIDE 434
L F +KP+ D + I +
Sbjct: 61 LHFEIKPHDDCTVEQIYEILKI 82
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase
inhibition, caspase activation, dimerization; 2.40A
{Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Length = 277
Score = 149 bits (376), Expect = 6e-42
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 7 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 65
+S Y + + G LI N+ +F L++R G+ D E L +L F+V+
Sbjct: 4 ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63
Query: 66 PYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE--------DGILHAKDVPYKPKN 117
D K + A+ E A QD+ DC V+ +L+HG + P +
Sbjct: 64 VKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEK 123
Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTI------------RTQVDGHP---- 161
+ + F +C +L GKPKLFFIQAC G++ D G + + D P
Sbjct: 124 IVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEG 183
Query: 162 -------SNTYSIPLHADFLMAYSTI 180
S+P +D ++YST
Sbjct: 184 LRTFDQLDAISSLPTPSDIFVSYSTF 209
Score = 75.9 bits (186), Expect = 1e-15
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
+S Y + + G LI N+ +F L++R G+ D E L +L F+V+
Sbjct: 4 ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63
Query: 340 PYHDPEFKVIQNAIDE 355
D K + A+ E
Sbjct: 64 VKGDLTAKKMVLALLE 79
Score = 75.9 bits (186), Expect = 1e-15
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 360 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 418
+S Y + + G LI N+ +F L++R G+ D E L +L F+V+
Sbjct: 4 ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63
Query: 419 PYHDPEFKVIQNAIDE 434
D K + A+ E
Sbjct: 64 VKGDLTAKKMVLALLE 79
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis,
caspase, alternative splicing, HOST- virus interaction,
polymorphism, cytoplasm, disease mutation; 1.90A {Homo
sapiens} PDB: 3h13_A
Length = 272
Score = 142 bits (360), Expect = 1e-39
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 27/191 (14%)
Query: 10 VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
+ Y+M K G+ LI + ++ E L T +LG+ V+ +
Sbjct: 29 QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75
Query: 70 PEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP---KNLWSKFTAD 125
I + + A ++ D D FV +++ G ++ D + ++ F D
Sbjct: 76 LSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGD 135
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDG----------HPSNTYSIPLHADFLM 175
+C LAGKPK+FFIQ + + +VDG ++ ADF
Sbjct: 136 SCPYLAGKPKMFFIQNYVVSEGQLENSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFW 195
Query: 176 AYSTISDSPMF 186
+ T S +
Sbjct: 196 SLCTADMSLLE 206
Score = 57.8 bits (139), Expect = 1e-09
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 284 VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
+ Y+M K G+ LI + ++ E L T +LG+ V+ +
Sbjct: 29 QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75
Query: 344 PEFKVIQNAID 354
I +
Sbjct: 76 LSMHGISQILG 86
Score = 57.8 bits (139), Expect = 1e-09
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 363 VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
+ Y+M K G+ LI + ++ E L T +LG+ V+ +
Sbjct: 29 QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75
Query: 423 PEFKVIQNAID 433
I +
Sbjct: 76 LSMHGISQILG 86
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ;
1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A*
1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A*
2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A*
3d6h_A* 2hbz_A* 2hbr_A* ...
Length = 178
Score = 138 bits (349), Expect = 4e-39
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 7 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 24 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81
Query: 65 KPYHDPEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKD------VPYKPKN 117
+ + ++ A ++ +D + ++HG + K +
Sbjct: 82 DVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNA 141
Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLD 148
+++ NC +L KPK+ IQAC+GD
Sbjct: 142 IFNMLNTKNCPSLKDKPKVIIIQACRGDSPG 172
Score = 71.6 bits (175), Expect = 8e-15
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 281 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 24 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81
Query: 339 KPYHDPEFKVIQNAIDEGPVAKSTVEKDAD 368
+ + ++ A K +D
Sbjct: 82 DVKKNLTASDMTTELEA--FAHRPEHKTSD 109
Score = 70.8 bits (173), Expect = 2e-14
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 360 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 24 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + ++
Sbjct: 82 DVKKNLTASDMTTELEA 98
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 141 bits (356), Expect = 9e-39
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 22/196 (11%)
Query: 7 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98
Query: 65 KPYHDPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHGEDGILHAKD------VPYKPKN 117
+ + ++ A + ++ +D + ++HG + K +
Sbjct: 99 DVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNA 158
Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGV-----------TIRTQVDGHPSNTYS 166
+++ NC +L KPK+ IQA +GD ++ T +
Sbjct: 159 IFNMLNTKNCPSLKDKPKVIIIQAARGDSPGVVWFKDSVGVSGNLSLPTTEEFEDDAIKK 218
Query: 167 IPLHADFLMAYSTISD 182
+ DF+ S+ D
Sbjct: 219 AHIEKDFIAFCSSTPD 234
Score = 72.4 bits (177), Expect = 2e-14
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 281 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98
Query: 339 KPYHDPEFKVIQNAIDEGPVAKSTVEKDAD 368
+ + ++ A K +D
Sbjct: 99 DVKKNLTASDMTTELEA--FAHRPEHKTSD 126
Score = 70.9 bits (173), Expect = 8e-14
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 360 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
+ +K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + ++
Sbjct: 99 DVKKNLTASDMTTELEA 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 4e-04
Identities = 74/580 (12%), Positives = 159/580 (27%), Gaps = 180/580 (31%)
Query: 13 DADYYRMDHKHRGLALIFNH---EHFDSPHLK---SRAGTGADFENLY---TTLVNLGFV 63
D + ++++ + +F ++FD ++ + + +++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 64 VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVL-THGEDGILHAKDVPYKPKNLWS-- 120
+ +++Q ++E +Y F+M+ + T + + + L++
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 121 -KFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
F N L +P L QA + V +DG + + + D ++Y
Sbjct: 124 QVFAKYNVSRL--QPYLKLRQALLELRPAKNVL----IDGVLGSGKTW-VALDVCLSYKV 176
Query: 180 IS--DSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEG 237
D +F + V + Q + +D N ++D + + E
Sbjct: 177 QCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 238 DVLGFKFQTDGHESHTNG----SAVGKDEGDVLGFNFG-R----TRMKGPVAKSTVEKDA 288
L K + + N V ++ FN + TR K V
Sbjct: 235 RRL-LK-----SKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATT 286
Query: 289 DYYRMDHKHRG---------LALIFNHEHFDSPHLKSR------AGTGA---DFENLYTT 330
+ +DH L + D P + D +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 331 LVNLGF------------VVKP------YHD----------PEFKVIQ----NAIDEGP- 357
++ V++P + P ++ + I
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVM 405
Query: 358 ------VAKSTVEKDAD---YYRMD---------------HK----HRGLALIFNHEHFD 389
S VEK H+ H + F+ +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 390 SP------------HLKS--RAGTGADFENLYTTLVNLGFV------------------- 416
P HLK+ F ++ ++ F+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNASGSILN 522
Query: 417 ----VKPY------HDPEFKVIQNAIDEGKDALIPSLFLP 446
+K Y +DP+++ + NAI + FLP
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILD---------FLP 553
Score = 30.2 bits (67), Expect = 1.8
Identities = 63/439 (14%), Positives = 114/439 (25%), Gaps = 132/439 (30%)
Query: 81 EAAEQDYTDADCFVMAVLTHGEDGI---LHAKDVPYKPKNLWSKFTADNCL----TLAGK 133
E E Y D +L+ ED KDV PK++ SK D+ + ++G
Sbjct: 10 ETGEHQYQYKD-----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 134 PKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLK 193
+LF+ + ++ ++ V+ Y FLM S I Q +
Sbjct: 65 LRLFWTLLSKQEE-----MVQKFVEEVLRINY------KFLM--SPIKTEQR--QPSMMT 109
Query: 194 DKCSKVVSKTY---QVMSS-NVDTSNGECQTDGHESHTNGSAVGKDEGDVL--GFKFQTD 247
+ + Y QV + NV + + + +VL G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNV------SRLQPYLKLRQALLELRPAKNVLIDGVL---- 159
Query: 248 GHESHTNGSAVGK---------DEGDVLGFNF-------GRTRMKGPVAKSTVEKDAD-Y 290
GS GK +F ++ +E
Sbjct: 160 -------GS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN----SPETVLEMLQKLL 206
Query: 291 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH-------- 342
Y++D + +H + L ++ L L KPY
Sbjct: 207 YQIDPNWTSRS-----DHSSNIKL--------RIHSIQAELRRL-LKSKPYENCLLVLLN 252
Query: 343 --DPEFKVIQNAIDEG----------PVAKSTVEKDADYYRMDHKHRG---------LAL 381
+ + NA + V + +DH L
Sbjct: 253 VQNAK---AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 382 IFNHEHFDSPHLKSR------AGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEG 435
+ D P + + T + + I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIESS 362
Query: 436 KDALIPSLFLPHSNKAGVF 454
+ L P+ + ++ VF
Sbjct: 363 LNVLEPAEYRKMFDRLSVF 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 7e-04
Identities = 64/480 (13%), Positives = 125/480 (26%), Gaps = 184/480 (38%)
Query: 60 LGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLW 119
LG+V D + LT E+ L D+ L
Sbjct: 65 LGYV---------------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALA 105
Query: 120 SKFTADNCLTLAGKPKLF--FIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAY 177
+K +N TL +L +I A + R S L
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARI-------MAKRPFDKKSNSA----------LFRA 148
Query: 178 STISDSPMFGQRFG-----------LKDKCSKVVSKTYQVMSSN-VDTSNGECQTDGHES 225
++ + FG L+D + +TY V+ + + S +
Sbjct: 149 VGEGNAQLVAI-FGGQGNTDDYFEELRD-----LYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 226 HTNGSAVGKDEGDVLGFKFQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVE 285
+ G ++L + ++ P
Sbjct: 203 LDAEKVFTQ------GL---------------------NILEW------LENPSNTP--- 226
Query: 286 KDADY------------------YRMDHKHRGL--ALIFNHEHFDSPHLK--------SR 317
D DY Y + K G + ++ + H + +
Sbjct: 227 -DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 318 AGTGADF-ENLYTTLVNLGFV------VKPYHDPEFKVIQNAIDEG---P--------VA 359
+ F ++ + L F+ P +++++++ P +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 360 KSTVEKDADYYRM---DHKHRGLALIFN-HEHF---DSP--------HL-KSRAGTGAD- 402
+ V+ + K ++L+ N ++ P L K++A +G D
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 403 -----------FENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE----------GKDALIP 441
F N + L V P+H + I++ KD IP
Sbjct: 405 SRIPFSERKLKFSNRF--LP----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 38.5 bits (89), Expect = 0.005
Identities = 55/378 (14%), Positives = 109/378 (28%), Gaps = 124/378 (32%)
Query: 147 LDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSK-TYQ 205
+DA + R H S + + + S L+++ +K++ + T
Sbjct: 1 MDA-YSTRPLTLSHGSLEHVLLVPTASFFIASQ------------LQEQFNKILPEPTEG 47
Query: 206 VMSSNVDTSNGECQTD--GHESHTNGSAVGKDEGDVLGF---KFQTD---GHESHTNGSA 257
+ + T+ E G+ S + VL +F+ G++ H +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 258 VGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPH---L 314
+ ++ L + K+ Y A I FD L
Sbjct: 108 LLQENDTTL-------VKTKELIKN-------YIT--------ARIMAKRPFDKKSNSAL 145
Query: 315 KSRAGTG-----ADF-----------E--NLYTT-------LVN-----LGFVVKPYHDP 344
G G A F E +LY T L+ L +++ D
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 345 EFKVIQNAID-----EGPVAKSTVEKDADY------------------YRMDHKHRGL-- 379
E KV ++ E P D DY Y + K G
Sbjct: 206 E-KVFTQGLNILEWLENPSNTP----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 380 ALIFNHEHFDSPHLK--------SRAGTGADF-ENLYTTLVNLGFV------VKPYHDPE 424
+ ++ + H + + + F ++ + L F+ P
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 425 FKVIQNAIDEGKDALIPS 442
+++++++ + PS
Sbjct: 321 PSILEDSLENNEGV--PS 336
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen,
hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo
sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B*
3edr_B 3ibc_B 3ibf_B 1i51_B
Length = 97
Score = 33.6 bits (77), Expect = 0.020
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 162 SNTYSIPLHADFLMAYSTISD 182
+ Y IP+ ADFL AYST+
Sbjct: 2 NPRYKIPVEADFLFAYSTVPG 22
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens}
SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B*
1qdu_B*
Length = 95
Score = 33.2 bits (76), Expect = 0.026
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 162 SNTYSIPLHADFLMAYSTISD 182
T IP ADFL+ +T+++
Sbjct: 4 PQTRYIPDEADFLLGMATVNN 24
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design,
radiation D tetrahedral intermediate, protease; 1.06A
{Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B*
2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B
1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B*
1i3o_B* 3edq_B ...
Length = 103
Score = 32.2 bits (73), Expect = 0.076
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 161 PSNTYSIPLHADFLMAYSTISD 182
+ IP+ ADFL AYST
Sbjct: 7 DMACHKIPVEADFLYAYSTAPG 28
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein,
apoptosi ankyrin repeat protein, ribosome display; 2.10A
{Homo sapiens} PDB: 2xzt_B 2y0b_B
Length = 118
Score = 32.2 bits (73), Expect = 0.10
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 155 TQVDGHPSNTYSIPLHADFLMAYSTISD 182
+ VD + IP+ ADFL AYST
Sbjct: 1 SGVDD-DMACHKIPVEADFLYAYSTAPG 27
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase;
1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B*
1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B*
1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B*
3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Length = 88
Score = 31.2 bits (71), Expect = 0.14
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 164 TYSIPLHADFLMAYSTI 180
+ DF+ S+
Sbjct: 2 IKKAHIEKDFIAFCSST 18
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease,
hydrolase-HY inhibitor complex; 1.65A {Homo sapiens}
SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B
3r7s_B 3r6l_B
Length = 105
Score = 31.3 bits (71), Expect = 0.16
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 164 TYSIPLHADFLMAYSTISD 182
+P +D + Y+ +
Sbjct: 8 KMRLPTRSDMICGYACLKG 26
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET:
3PX; 2.55A {Homo sapiens}
Length = 117
Score = 30.3 bits (68), Expect = 0.44
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 164 TYSIPLHADFLMAYSTISD 182
+P +D + Y+ +
Sbjct: 9 KMRLPTRSDMICGYACLKG 27
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 27.8 bits (63), Expect = 7.4
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 13/68 (19%)
Query: 372 MDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNA 431
+D + L D F+ T++ ++P + +
Sbjct: 179 LDFHNFVLTQYLGGAAVD-------------FQATLDTMLGYADRLRPMVADVSRRLYEE 225
Query: 432 IDEGKDAL 439
G++ L
Sbjct: 226 NHAGRNLL 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,157,087
Number of extensions: 442456
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 70
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)