RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15857
(455 letters)
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
frugiperda) [TaxId: 7108]}
Length = 256
Score = 172 bits (437), Expect = 2e-51
Identities = 105/176 (59%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
Query: 5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 2 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61
Query: 65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
+ + + + I I + AE D++DADC ++AVLTHGE G+L+AKD YKP NLW FTA
Sbjct: 62 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 121
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYST 179
D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST
Sbjct: 122 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFST 177
Score = 88.6 bits (219), Expect = 1e-20
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 2 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61
Query: 339 KPYHDPEFKVIQNAIDE 355
+ + + + I I +
Sbjct: 62 TVFPNLKSEEINKFIQQ 78
Score = 88.6 bits (219), Expect = 1e-20
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
VA+ V+++A YY M+HKHRG+A+IFNHEHFD LKSR GT D +NL L LGF V
Sbjct: 2 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61
Query: 418 KPYHDPEFKVIQNAIDE 434
+ + + + I I +
Sbjct: 62 TVFPNLKSEEINKFIQQ 78
>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 238
Score = 139 bits (352), Expect = 3e-39
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 15 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 73
+ Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D +
Sbjct: 7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTRE 66
Query: 74 VIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGK 133
I + + +++D++ FV +L+HGE+GI+ + P K + + F D C +L GK
Sbjct: 67 EIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGK 126
Query: 134 PKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMF 186
PKLF IQAC+G +LD G+ IP+ ADFL AYST +
Sbjct: 127 PKLFIIQACRGTELDCGI------------ETKIPVDADFLYAYSTAPGYYSW 167
Score = 72.1 bits (176), Expect = 5e-15
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 289 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 347
+ Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D +
Sbjct: 7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTRE 66
Query: 348 VIQNAIDEGPVAKSTVEKDAD---YYRMDHKHRG 378
I + + + H G
Sbjct: 67 EIVELMRD---VSKEDHSKRSSFVCVLLSHGEEG 97
Score = 71.7 bits (175), Expect = 8e-15
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 368 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 426
+ Y+MD+ GL +I N+++F S + SR+GT D NL T NL + V+ +D +
Sbjct: 7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTRE 66
Query: 427 VIQNAIDE 434
I + +
Sbjct: 67 EIVELMRD 74
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 245
Score = 137 bits (345), Expect = 3e-38
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 3 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62
Query: 76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
Q+ + +A+E+D+T+A CF +L+HGE+ +++ KD K+L + F D TL KPK
Sbjct: 63 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPK 122
Query: 136 LFFIQACQGDKLDAGVTIRTQV--DGHPSNTYSIPLHADFLMAYSTISDSPMF 186
LFFIQAC+G +LD G+ + D + Y IP+ ADFL AYST+ +
Sbjct: 123 LFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSW 175
Score = 72.1 bits (176), Expect = 5e-15
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 3 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62
Query: 429 QNAIDEGKDALIPS------LFLPHSNKAGVF 454
Q+ + + + + + L H + ++
Sbjct: 63 QDLLKKASEEDHTNAACFACILLSHGEENVIY 94
Score = 71.8 bits (175), Expect = 8e-15
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
Y M+ + G +I N+++FD + R GT D E L+ +LGF V Y+D +
Sbjct: 3 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62
Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRG 378
Q+ + + T + H
Sbjct: 63 QDLLKKASEEDHTNAACFACILLSHGEEN 91
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 128 bits (321), Expect = 8e-35
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 15 DYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVNLGFVVKP 66
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP
Sbjct: 2 KVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP 61
Query: 67 YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTAD 125
+ D + I + D+++ DCF+ +L+HG+ GI++ D P L S+FT
Sbjct: 62 HDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGL 121
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDS 183
C +LAGKPK+FFIQACQGD G+ + ++T IP ADFL+ +T+++
Sbjct: 122 KCPSLAGKPKVFFIQACQGDNYQKGIPVE-------TDTRYIPDEADFLLGMATVNNC 172
Score = 65.6 bits (159), Expect = 9e-13
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Query: 368 DYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVNLGFVVKP 419
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP
Sbjct: 2 KVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP 61
Query: 420 YHDPEFKVIQNAIDE------GKDALIPSLFLPHSNKAGVF 454
+ D + I + L H +K ++
Sbjct: 62 HDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIY 102
Score = 65.6 bits (159), Expect = 9e-13
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 289 DYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVNLGFVVKP 340
Y+M K RG LI N+ +F ++ R GT D L TT L F +KP
Sbjct: 2 KVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKP 61
Query: 341 YHDPEFKVIQNAIDE 355
+ D + I +
Sbjct: 62 HDDCTVEQIYEILKI 76
>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 257
Score = 127 bits (319), Expect = 2e-34
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 15 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 73
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D +
Sbjct: 17 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQ 76
Query: 74 VIQNAIDE-AAEQDYTDADCFVMAVLTHG-EDGILHAKDVPYKPKNLWSKFTADNCLTLA 131
+Q + A + D ++A+L+HG E I + + ++ F NC +L
Sbjct: 77 EMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQ 136
Query: 132 GKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDS 183
KPK+FFIQAC+GD+ D GV +P +D + Y+ + +
Sbjct: 137 NKPKMFFIQACRGDETDRGV--------DQQPKMRLPTRSDMICGYACLKGT 180
Score = 75.6 bits (185), Expect = 5e-16
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 289 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 347
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D +
Sbjct: 17 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQ 76
Query: 348 VIQNAIDEGPVAKSTVEKDAD---YYRMDHKHRG 378
+Q + A+ + D + H G
Sbjct: 77 EMQEKLQN--FAQLPAHRVTDSCIVALLSHGVEG 108
Score = 75.2 bits (184), Expect = 7e-16
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 368 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 426
YR+ + RGLAL+ ++ HF L+ R+G D L T LG+ V D +
Sbjct: 17 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQ 76
Query: 427 VIQNAIDE 434
+Q +
Sbjct: 77 EMQEKLQN 84
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
9606]}
Length = 277
Score = 124 bits (312), Expect = 3e-33
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 9/211 (4%)
Query: 15 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 73
Y + + G LI N+ +F L++R G+ D E L +L F+V+ D K
Sbjct: 12 LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71
Query: 74 VIQNAIDEAAEQDYTDADCFVMAVLTHG-EDGILHAKDVPYKP-------KNLWSKFTAD 125
+ A+ E A QD+ DC V+ +L+HG + L Y + + + F
Sbjct: 72 KMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGT 131
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPM 185
+C +L GKPKLFFIQAC G++ D G + + S + A D
Sbjct: 132 SCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLD 191
Query: 186 FGQRFGLKDKCSKVVSKTYQVMSSNVDTSNG 216
S +S S
Sbjct: 192 AISSLPTPSDIFVSYSTFPGFVSWRDPKSGS 222
Score = 72.6 bits (177), Expect = 6e-15
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 289 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 347
Y + + G LI N+ +F L++R G+ D E L +L F+V+ D K
Sbjct: 12 LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71
Query: 348 VIQNAIDE 355
+ A+ E
Sbjct: 72 KMVLALLE 79
Score = 72.6 bits (177), Expect = 6e-15
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 368 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 426
Y + + G LI N+ +F L++R G+ D E L +L F+V+ D K
Sbjct: 12 LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71
Query: 427 VIQNAIDE 434
+ A+ E
Sbjct: 72 KMVLALLE 79
>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a
cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
Length = 261
Score = 101 bits (253), Expect = 3e-25
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 19/182 (10%)
Query: 11 EKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
+K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 23 QKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKK 80
Query: 69 DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHGEDGILHAKD------VPYKPKNLWSK 121
+ + ++ A + ++ +D + ++HG + K + +++
Sbjct: 81 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 140
Query: 122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTIS 181
NC +L KPK+ IQA +GD V + DF+ S+
Sbjct: 141 LNTKNCPSLKDKPKVIIIQAARGDSPG--------VVWFKDAIKKAHIEKDFIAFCSSTP 192
Query: 182 DS 183
D+
Sbjct: 193 DN 194
Score = 54.1 bits (129), Expect = 7e-09
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 364 EKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 421
+K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 23 QKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKK 80
Query: 422 DPEFKVIQNAIDEGKDALIPS-------LFLPHSNKAGVFY 455
+ + ++ +F+ H + G+
Sbjct: 81 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICG 121
Score = 54.1 bits (129), Expect = 8e-09
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 285 EKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 342
+K A+ Y + K LALI +E FD + R G D + L NLG+ V
Sbjct: 23 QKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKK 80
Query: 343 DPEFKVIQNAIDE 355
+ + ++
Sbjct: 81 NLTASDMTTELEA 93
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 29.6 bits (66), Expect = 0.53
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 373 DHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAI 432
+H GL + H + G G+ + F+++ + E I A+
Sbjct: 110 HGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR----AFLLQKFSSEERVQIDTAL 165
Query: 433 DEGKDAL 439
++G DA+
Sbjct: 166 EQGVDAV 172
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Length = 250
Score = 27.6 bits (60), Expect = 3.3
Identities = 13/122 (10%), Positives = 35/122 (28%), Gaps = 14/122 (11%)
Query: 293 MDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF---KVI 349
+ + + ++ H + ++ G A+ + +N + P+ P F +
Sbjct: 121 LKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFIN----ILPFESPHFADCQTE 176
Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTT 409
+ G + L + + + H +S F +
Sbjct: 177 LKVLASGSAEGINFT----FRGSPQHELCLDITADLASYPQSHWQSHCER---FPRFFEQ 229
Query: 410 LV 411
L+
Sbjct: 230 LL 231
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli
[TaxId: 562]}
Length = 305
Score = 27.0 bits (58), Expect = 4.5
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 58 VNLGFVVKPYHDPEFKVIQNAIDEAAEQ-----------DYTDADCFVMAVLTHGEDGIL 106
+ LGF+VK +P F+ D+A + D + ++ G G +
Sbjct: 2 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 61
Query: 107 HAKDVPYKPKNLWSKFTADNC 127
P + +K +
Sbjct: 62 ICTPDPKLGSAIVAKARGYDM 82
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 25.7 bits (56), Expect = 4.5
Identities = 5/44 (11%), Positives = 15/44 (34%)
Query: 194 DKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEG 237
++C++ + + D + +C S ++G
Sbjct: 37 NRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHE 80
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 27.1 bits (60), Expect = 5.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 398 GTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIP 441
G F+ +Y T L +V P P + + + + L P
Sbjct: 344 TAGVRFDRVYAT---LQNMVVPEIAPGEECPSDPVTDPAHPLHP 384
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 26.0 bits (56), Expect = 8.8
Identities = 4/33 (12%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 73 KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGI 105
++++ ++E ++ + F + ++ ++GI
Sbjct: 158 ELLRKCLEELQKRFILNLPTFSVRIID--KNGI 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,710,889
Number of extensions: 79371
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 34
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)