BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15859
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AXS|A Chain A, Structure Of Carbamate Kinase From Mycoplasma Penetrans
Length = 332
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 97 ILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQV--KADDIPEDFNKPKFGYYKT 149
I+Q Q+ D + +D ALAK + N++I V D + DFNKP KT
Sbjct: 217 IIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKT 271
>pdb|3I0T|A Chain A, Sulfur-Sad At Long Wavelength: Structure Of Bh3703 From
Bacillus Halodurans
pdb|3I0T|B Chain B, Sulfur-Sad At Long Wavelength: Structure Of Bh3703 From
Bacillus Halodurans
Length = 179
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 115 ALAKAIETYNSEIRQVKADDIPEDFNKPKF 144
+L K IE+Y EI Q+ D IPE++ + +F
Sbjct: 2 SLEKQIESYYQEIAQLIIDMIPEEWAEVRF 31
>pdb|2IA1|A Chain A, Crystal Structure Of Protein Bh3703 From Bacillus
Halodurans, Pfam Duf600
pdb|2IA1|B Chain B, Crystal Structure Of Protein Bh3703 From Bacillus
Halodurans, Pfam Duf600
Length = 178
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 115 ALAKAIETYNSEIRQVKADDIPEDFNKPKF 144
+L K IE+Y EI Q+ D IPE++ + +F
Sbjct: 1 SLEKQIESYYQEIAQLIIDMIPEEWAEVRF 30
>pdb|1YY7|A Chain A, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
pdb|1YY7|B Chain B, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
Length = 213
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 126 EIRQVKADDIPEDFNKPKFGYYKTKPSLANEFKRAVETKVDM 167
EI QV+AD++P+D Y+T P+L + E+++ M
Sbjct: 37 EIEQVEADNLPQDLI--DLNPYRTVPTLVDRELTLYESRIIM 76
>pdb|1VRC|A Chain A, Complex Of Enzyme Iiamannose And The Histidine-Containing
Phosphocarrier Protein Hpr From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
pdb|1VRC|B Chain B, Complex Of Enzyme Iiamannose And The Histidine-Containing
Phosphocarrier Protein Hpr From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
Length = 136
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 96 IILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKA 132
++++TL + +DPS DE +A A+ET ++ +KA
Sbjct: 97 MLVETLMARDDDPSF--DELVALAVETGREGVKALKA 131
>pdb|1PDO|A Chain A, Phosphoenolpyruvate-Dependent Phosphotransferase System
Length = 135
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 96 IILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKA 132
++++TL + +DPS DE +A A+ET ++ +KA
Sbjct: 96 MLVETLMARDDDPSF--DELVALAVETGREGVKALKA 130
>pdb|1VSQ|A Chain A, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|1VSQ|B Chain B, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
Length = 133
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 96 IILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKA 132
++++TL + +DPS DE +A A+ET ++ +KA
Sbjct: 96 MLVETLMARDDDPSF--DELVALAVETGREGVKALKA 130
>pdb|2JZN|A Chain A, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|2JZN|B Chain B, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
Length = 133
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 96 IILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKA 132
++++TL + +DPS DE +A A+ET ++ +KA
Sbjct: 96 MLVETLMARDDDPSF--DELVALAVETGREGVKALKA 130
>pdb|2JZO|A Chain A, Solution Nmr Structure Of The Non-Productive Complex
Between Iiamannose And Iibmannose Of The Mannose
Transporter Of The E. Coli Phosphotransferase System
pdb|2JZO|B Chain B, Solution Nmr Structure Of The Non-Productive Complex
Between Iiamannose And Iibmannose Of The Mannose
Transporter Of The E. Coli Phosphotransferase System
Length = 133
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 96 IILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKA 132
++++TL + +DPS DE +A A+ET ++ +KA
Sbjct: 96 MLVETLMARDDDPSF--DELVALAVETGREGVKALKA 130
>pdb|3L8J|A Chain A, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
Length = 202
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 80 PGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEAL----AKAIET-YNSEIRQVKADD 134
P +N LE+ + +Q + ++ +KE+P L++D + K++E + + ++ ADD
Sbjct: 18 PVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADD 77
Query: 135 IPE 137
+ E
Sbjct: 78 VEE 80
>pdb|3L8I|A Chain A, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|B Chain B, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|C Chain C, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|D Chain D, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3RQE|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQF|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQG|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
Length = 214
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 80 PGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEAL----AKAIET-YNSEIRQVKADD 134
P +N LE+ + +Q + ++ +KE+P L++D + K++E + + ++ ADD
Sbjct: 30 PVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADD 89
Query: 135 IPE 137
+ E
Sbjct: 90 VEE 92
>pdb|3AJM|A Chain A, Crystal Structure Of Programmed Cell Death 10 In Complex
With Inositol 1,3,4,5-Tetrakisphosphate
pdb|3AJM|B Chain B, Crystal Structure Of Programmed Cell Death 10 In Complex
With Inositol 1,3,4,5-Tetrakisphosphate
Length = 213
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 80 PGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEAL----AKAIET-YNSEIRQVKADD 134
P +N LE+ + +Q + ++ +KE+P L++D + K++E + + ++ ADD
Sbjct: 21 PVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADD 80
Query: 135 IPE 137
+ E
Sbjct: 81 VEE 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,251,849
Number of Sequences: 62578
Number of extensions: 213346
Number of successful extensions: 544
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 16
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)