BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15859
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2NL27|RT23_BOVIN 28S ribosomal protein S23, mitochondrial OS=Bos taurus GN=MRPS23
PE=1 SV=1
Length = 190
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRP-----IADV 55
MA SRLE +G+IFTR L+RAG + EKP+W+DVY AFPP EP++ RP A
Sbjct: 1 MAGSRLETVGSIFTRTRDLIRAGVLK--EKPLWFDVYNAFPPLREPVFRRPRLRYGKAKS 58
Query: 56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
P ++I Y ED IRAK + A G ++L N + Q+ + + ++ QK
Sbjct: 59 PTQDIYYHEDQIRAKFYAAYGSGPKAFDLFNPNFKSTCQRFVEKYIELQK 108
>sp|Q9Y3D9|RT23_HUMAN 28S ribosomal protein S23, mitochondrial OS=Homo sapiens GN=MRPS23
PE=1 SV=2
Length = 190
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
MA SRLE +G+IF+R L+RAG + EKP+W+DVY AFPP EP++ RP A
Sbjct: 1 MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58
Query: 56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQK 105
PI++I Y ED IRAK + G ++L N + Q+ + + + QK
Sbjct: 59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQK 108
>sp|Q8VE22|RT23_MOUSE 28S ribosomal protein S23, mitochondrial OS=Mus musculus GN=Mrps23
PE=2 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 1 MASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPI-----ADV 55
MA SRLE +G++F+R L+RAG + EKP+WYD+Y+AFPP EP++ RP A
Sbjct: 1 MAGSRLETVGSVFSRTRDLMRAGVLK--EKPLWYDIYKAFPPLREPVFRRPRLRYGKAKA 58
Query: 56 PIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKII-----LQTLQHQKED 107
I++I Y ED IRAK G ++L N + Q+ + LQ L E+
Sbjct: 59 DIQDIFYQEDQIRAKFFATYGSGQKAFDLFNPNFKSTCQRFVEKYTELQNLGETDEE 115
>sp|P34748|YO67_CAEEL Uncharacterized protein ZK1098.7 OS=Caenorhabditis elegans
GN=ZK1098.7 PE=4 SV=1
Length = 133
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MAS--SRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIA--DVP 56
MAS +R E+ G IF+RVTGL+RAG +N ++P+WYDVY + PP P ++ +A D P
Sbjct: 1 MASFITRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEP 60
Query: 57 IKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDE 114
I+ I Y ED +RAK +K + G ++ +R +VSQ+ I + + E+ ++D+
Sbjct: 61 IRSIFYEEDVLRAKFYKTY-RSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQ 116
>sp|Q3AUR5|CLPS_SYNS9 ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus
sp. (strain CC9902) GN=clpS PE=3 SV=1
Length = 104
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 77 KKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKADDI- 135
K+ P Y +L N P S + ++ TL+ P LSE +A+A +E +N+ + V DI
Sbjct: 25 KRSPRYKVLLHNDPVNSMEYVMTTLRQVV--PQLSEQDAMAVMLEAHNTGVGLVIVCDIE 82
Query: 136 PEDF 139
P +F
Sbjct: 83 PAEF 86
>sp|A3LYR9|RT25_PICST 37S ribosomal protein S25, mitochondrial OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=RSM25 PE=3 SV=2
Length = 274
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 8 KIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVE 45
K T+ R + L+ G + +KP WYDV AFPP +
Sbjct: 6 KATTVLERTSHYLKVGVLK--QKPAWYDVVGAFPPHTD 41
>sp|Q5X8W1|GCST_LEGPA Aminomethyltransferase OS=Legionella pneumophila (strain Paris)
GN=gcvT PE=3 SV=1
Length = 360
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 63 PED-------SIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQ-----TLQHQKEDPSL 110
PED ++ ++ + + +KM G LL+K QK+I++ + P+L
Sbjct: 259 PEDRGFIGMGALASQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTL 318
Query: 111 SEDEALAKA-IETYNSEIRQVKADDIPEDFNKPKF 144
+ ALA+ +ET + ++ IP KP+F
Sbjct: 319 QQSIALARVPVETGEQVLVDIRGKLIPAKVGKPRF 353
>sp|Q5X0A4|GCST_LEGPL Aminomethyltransferase OS=Legionella pneumophila (strain Lens)
GN=gcvT PE=3 SV=1
Length = 360
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 73 KALGKKMPGYNLLEKNRPTVSQKIILQ-----TLQHQKEDPSLSEDEALAKA-IETYNSE 126
+ + +KM G LL+K QK+I++ + P+L + ALA+ +ET
Sbjct: 276 QGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPVETGEQV 335
Query: 127 IRQVKADDIPEDFNKPKF 144
+ ++ IP KP+F
Sbjct: 336 LVDIRGKLIPAKVGKPRF 353
>sp|A5I9T7|GCST_LEGPC Aminomethyltransferase OS=Legionella pneumophila (strain Corby)
GN=gcvT PE=3 SV=1
Length = 360
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 73 KALGKKMPGYNLLEKNRPTVSQKIILQ-----TLQHQKEDPSLSEDEALAKA-IETYNSE 126
+ + +KM G LL+K QK+I++ + P+L + ALA+ +ET
Sbjct: 276 QGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPVETGEQV 335
Query: 127 IRQVKADDIPEDFNKPKF 144
+ ++ IP KP+F
Sbjct: 336 LVDIRGKLIPAKVGKPRF 353
>sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Drosophila melanogaster
GN=hiw PE=1 SV=2
Length = 5233
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 12 IFTRVTGLLRAGAMNVNEKPIWY--DVYRAFPPKVEPLYSRPIADVPIKEIIYP---EDS 66
I + + G++ GA+ + W+ D P + P +S P+A V ++E++ +DS
Sbjct: 3223 IGSAIAGVVGGGAIKLQALQKWFKGDAVDG-PQPLTPSHSPPLAGVSVRELVRAMGGQDS 3281
Query: 67 IRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDP 108
R +++ ++ P ++L RP S L K P
Sbjct: 3282 PRGNGNRSQQEQDPEFSLASMRRPNYSASQTAALLSTPKHTP 3323
>sp|Q5BK13|TM199_RAT Transmembrane protein 199 OS=Rattus norvegicus GN=Tmem199 PE=2 SV=1
Length = 208
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 67 IRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSE 126
+RA+L ALGKK G + R VS ++I QH +E S+ L + E Y E
Sbjct: 30 LRAQLEAALGKKHAGSDNATGPRRLVSFRLIRDLHQHLRERNSMLYLHELLEGSEIYFPE 89
Query: 127 IRQVKADDIPEDFNKPKFGYYKTKPSLAN-EFKR 159
I VK PE + + K K LAN E+KR
Sbjct: 90 I--VKPPRNPELVARLE----KIKIQLANEEYKR 117
>sp|Q5ZZ93|GCST_LEGPH Aminomethyltransferase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvT
PE=3 SV=2
Length = 360
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 73 KALGKKMPGYNLLEKNRPTVSQKIILQ-----TLQHQKEDPSLSEDEALAKA-IETYNSE 126
+ + +KM G LL+K QK+I++ + P+L + ALA+ +ET
Sbjct: 276 QGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPMETGEQV 335
Query: 127 IRQVKADDIPEDFNKPKF 144
+ ++ IP KP+F
Sbjct: 336 LVDIRGKLIPAKVGKPRF 353
>sp|Q748Y8|EFG2_GEOSL Elongation factor G 2 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=fusA2 PE=3 SV=1
Length = 692
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 4 SRLEKIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYP 63
++++++G F R G++R + N PI P E Y + V +K II+
Sbjct: 135 NKMDRVGADFFRGVGMIR-DRLKANPVPI------QLPIGAEDTYRGVVDLVEMKAIIWD 187
Query: 64 EDSIRAKLHKA 74
E+S+ AK H+A
Sbjct: 188 EESLGAKYHEA 198
>sp|Q5AQ57|RT25_CANAL 37S ribosomal protein S25, mitochondrial OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RSM25 PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 10 GTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPP 42
+ R + L++G + EKP+WYD+ +PP
Sbjct: 8 ANVLQRASAQLKSGLLK--EKPLWYDIIAKYPP 38
>sp|A2BYM5|CLPS_PROM5 ATP-dependent Clp protease adapter protein ClpS OS=Prochlorococcus
marinus (strain MIT 9515) GN=clpS PE=3 SV=1
Length = 105
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 74 ALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKAD 133
AL K P Y +L N P S + I T+ ++ P LSE +A+A +E +N+ + V
Sbjct: 23 ALKNKSPKYKVLLHNDPVNSMEYI--TIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVC 80
Query: 134 DI-PEDF 139
D+ P +F
Sbjct: 81 DLEPAEF 87
>sp|Q6FVZ7|RT25_CANGA 37S ribosomal protein S25, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RSM25 PE=3 SV=1
Length = 272
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 12 IFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKV----EPLYSRPIADVPIKEIIYPE 64
+ R + LR G + E P WY+V + PP EP P D + E+ P+
Sbjct: 10 VLERTSAYLRTGV--IKETPAWYNVVASIPPVTKFTREPHKINPSTDKKVSELKDPD 64
>sp|Q5SYH2|TM199_MOUSE Transmembrane protein 199 OS=Mus musculus GN=Tmem199 PE=2 SV=1
Length = 208
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 67 IRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSE 126
+RA+L ALGKK G + R VS ++I QH +E S L + + Y E
Sbjct: 30 LRAQLEAALGKKHAGSDNATGPRRLVSFRLIRDLHQHLRERNSRLYLHELLEGSDIYFPE 89
Query: 127 IRQVKADDIPEDFNKPKFGYYKTKPSLAN-EFKR 159
I VK PE + + K K LAN E+KR
Sbjct: 90 I--VKPPRNPELVARLE----KIKIQLANEEYKR 117
>sp|Q4FN15|GLMM_PELUB Phosphoglucosamine mutase OS=Pelagibacter ubique (strain HTCC1062)
GN=glmM PE=3 SV=1
Length = 443
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 98 LQTLQHQKEDPSLSEDEALA--KAIETYNSEIRQVKADDIPEDFN 140
++TL QK + SLS+ + L K +ET N + ++ +++P+DFN
Sbjct: 130 IETLIDQKIEKSLSKPKKLGRVKRLETANKDYIKILKNNLPKDFN 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,881,358
Number of Sequences: 539616
Number of extensions: 2719385
Number of successful extensions: 7916
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 7900
Number of HSP's gapped (non-prelim): 44
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)