Query psy15859
Match_columns 175
No_of_seqs 93 out of 104
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 23:11:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyi_A Double-stranded RNA-bin 28.8 29 0.00098 24.6 2.0 29 10-38 45-75 (82)
2 1f8v_D Mature capsid protein g 24.6 40 0.0014 21.4 1.9 16 11-26 2-17 (40)
3 2z2q_B Coat protein gamma; wil 17.4 46 0.0016 21.5 1.1 16 11-26 2-17 (44)
4 1qgp_A Protein (double strande 16.2 63 0.0022 21.7 1.6 25 10-34 46-72 (77)
5 1nov_D Nodamura virus coat pro 15.4 54 0.0018 21.2 1.0 16 11-26 2-17 (44)
6 3b73_A PHIH1 repressor-like pr 13.0 96 0.0033 22.5 2.0 26 10-36 44-69 (111)
7 1hbk_A ACBP, acyl-COA binding 10.3 4.4E+02 0.015 18.1 4.9 56 65-125 24-82 (89)
8 3epy_A Acyl-COA-binding domain 9.7 4.8E+02 0.016 18.2 4.9 49 72-125 34-82 (89)
9 1qbj_A Protein (double-strande 9.6 1.4E+02 0.0048 20.4 1.8 26 10-35 42-69 (81)
10 2lbb_A Acyl COA binding protei 9.4 5.3E+02 0.018 18.4 6.3 50 71-125 40-89 (96)
No 1
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=28.78 E-value=29 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHcCCCC--CCCCCcceeeec
Q psy15859 10 GTIFTRVTGLLRAGAMN--VNEKPIWYDVYR 38 (175)
Q Consensus 10 GtIftRts~LLrsG~lk--~~ekPlWYDVya 38 (175)
.+|..|+..|.+.|+|. ...-|.|+-..+
T Consensus 45 ~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~ 75 (82)
T 1oyi_A 45 REVNKALYDLQRSAMVYSSDDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence 57999999999999996 334477775444
No 2
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=24.56 E-value=40 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHcCCCC
Q psy15859 11 TIFTRVTGLLRAGAMN 26 (175)
Q Consensus 11 tIftRts~LLrsG~lk 26 (175)
+..+||..+|+||+-.
T Consensus 2 ~mWErVk~ilks~l~~ 17 (40)
T 1f8v_D 2 KFWEGVLRVLNQISGT 17 (40)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6789999999999865
No 3
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=17.39 E-value=46 Score=21.46 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCCCC
Q psy15859 11 TIFTRVTGLLRAGAMN 26 (175)
Q Consensus 11 tIftRts~LLrsG~lk 26 (175)
+..+||..+|++|+-.
T Consensus 2 ~~WErVk~ilks~l~a 17 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAA 17 (44)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6789999999998754
No 4
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=16.20 E-value=63 Score=21.71 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHcCCCC--CCCCCcce
Q psy15859 10 GTIFTRVTGLLRAGAMN--VNEKPIWY 34 (175)
Q Consensus 10 GtIftRts~LLrsG~lk--~~ekPlWY 34 (175)
.+|-.++..|.++|+|. ....|.|+
T Consensus 46 ~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 46 KEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 48999999999999995 23446665
No 5
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=15.37 E-value=54 Score=21.17 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCCCC
Q psy15859 11 TIFTRVTGLLRAGAMN 26 (175)
Q Consensus 11 tIftRts~LLrsG~lk 26 (175)
+..+||..+|++|+-.
T Consensus 2 ~mWErVk~ilks~l~~ 17 (44)
T 1nov_D 2 TFWERVRSILKSGLNF 17 (44)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5789999999998643
No 6
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=13.00 E-value=96 Score=22.53 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHcCCCCCCCCCcceee
Q psy15859 10 GTIFTRVTGLLRAGAMNVNEKPIWYDV 36 (175)
Q Consensus 10 GtIftRts~LLrsG~lk~~ekPlWYDV 36 (175)
.+|-.|++.|-..|+|....+| ||.+
T Consensus 44 ~aVs~rL~~Le~~GLV~~~~rg-~Y~L 69 (111)
T 3b73_A 44 SSVSRRLKKLADHDLLQPLANG-VYVI 69 (111)
T ss_dssp HHHHHHHHHHHHTTSEEECSTT-CEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCc-eEEE
Confidence 3688999999999999855566 6655
No 7
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=10.26 E-value=4.4e+02 Score=18.15 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred hHHHHHH---HHhhCCCCCccccCCCCCCCchhhhhHHHHHhhhcCCCCChHHHHHHHHHHHHH
Q psy15859 65 DSIRAKL---HKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNS 125 (175)
Q Consensus 65 D~IRAkF---ykqy~~~~~p~~Ls~pk~~s~~q~F~veky~~l~q~g~Ld~Esvfq~T~~lL~~ 125 (175)
+..+=.| ||| ...+ +.+-.+|.+...-.+. ||..-.+++.++-|+.-++=+.++.+
T Consensus 24 ~~~~L~LYalyKQ-At~G-d~~~~~Pg~~d~~~~a---Kw~AW~~l~gms~eeA~~~YI~~v~~ 82 (89)
T 1hbk_A 24 NELKLDLYKYYKQ-STIG-NCNIKEPSAHKYIDRK---KYEAWKSVENLNREDAQKRYVDIVSE 82 (89)
T ss_dssp HHHHHHHHHHHHH-HHTC-SCCSCCCCTTSHHHHH---HHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhcC-CCCCCCCCccCHHhHH---HHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3344445 555 3333 6666677654332333 47777777789988877776766654
No 8
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=9.75 E-value=4.8e+02 Score=18.15 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=30.0
Q ss_pred HHhhCCCCCccccCCCCCCCchhhhhHHHHHhhhcCCCCChHHHHHHHHHHHHH
Q psy15859 72 HKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNS 125 (175)
Q Consensus 72 ykqy~~~~~p~~Ls~pk~~s~~q~F~veky~~l~q~g~Ld~Esvfq~T~~lL~~ 125 (175)
|+| ...+ +.+..+|.+...-.+. ||..-.+++.++-|+.-++=+.++.+
T Consensus 34 yKQ-At~G-d~~~~~Pg~~d~~~~a---Kw~AW~~l~g~s~eeA~~~Yi~~v~~ 82 (89)
T 3epy_A 34 YKQ-AIVG-DINIACPGMLDLKGKA---KWEAWNLKKGLSTEDATSAYISKAKE 82 (89)
T ss_dssp HHH-HHTC-SCCSCCTTTTCHHHHH---HHHHHHTTTTCCHHHHHHHHHHHHHH
T ss_pred HHH-HhhC-CCCCCCCcccchHHHH---HHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 555 3334 6676777654433333 37777777778888776666666543
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=9.60 E-value=1.4e+02 Score=20.40 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCCCC--CCCCCccee
Q psy15859 10 GTIFTRVTGLLRAGAMN--VNEKPIWYD 35 (175)
Q Consensus 10 GtIftRts~LLrsG~lk--~~ekPlWYD 35 (175)
.+|-.++..|.+.|+|. ...+|.|+-
T Consensus 42 ~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 42 KEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 47899999999999996 233456653
No 10
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=9.36 E-value=5.3e+02 Score=18.37 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=32.9
Q ss_pred HHHhhCCCCCccccCCCCCCCchhhhhHHHHHhhhcCCCCChHHHHHHHHHHHHH
Q psy15859 71 LHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNS 125 (175)
Q Consensus 71 Fykqy~~~~~p~~Ls~pk~~s~~q~F~veky~~l~q~g~Ld~Esvfq~T~~lL~~ 125 (175)
+||| ...+ +.+-.+|.+.....+. ||..-.+++.++-|+.-++=+.++.+
T Consensus 40 LyKQ-At~G-d~~~~~Pg~~d~~gra---Kw~AW~~l~gmS~eeAm~~YI~lv~~ 89 (96)
T 2lbb_A 40 YYKQ-ATVG-DCNKPKPGMLQLQEKY---KWEAWNALRGMSTESAKEAYVKLLDT 89 (96)
T ss_dssp HHHH-TTTS-SCCCCCCCSSCSHHHH---HHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHH-HhcC-CCCCCCCCcccHHhHH---HHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5777 5544 6776777654433333 47777777778888877777776654
Done!