Query psy15859
Match_columns 175
No_of_seqs 93 out of 104
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 23:11:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cyya1 a.4.5.32 (A:5-64) Puta 30.2 13 0.00091 22.5 1.9 17 10-26 32-48 (60)
2 d1pula1 a.39.1.11 (A:18-120) H 29.0 70 0.0051 21.7 6.1 72 63-139 3-92 (103)
3 d1i1ga1 a.4.5.32 (A:2-61) LprA 20.9 25 0.0018 21.1 2.0 17 10-26 32-48 (60)
4 d1wm8a_ g.3.7.2 (A:) Neurotoxi 20.2 16 0.0012 19.9 0.9 8 168-175 19-26 (28)
5 d2g7ga1 a.4.1.9 (A:9-73) Putat 20.0 11 0.00084 23.0 0.2 56 110-166 1-59 (65)
6 d2cfxa1 a.4.5.32 (A:1-63) Tran 18.0 21 0.0015 21.7 1.2 17 10-26 34-50 (63)
7 d2cg4a1 a.4.5.32 (A:4-66) Regu 16.5 23 0.0017 21.4 1.1 17 10-26 34-50 (63)
8 d1z0xa1 a.4.1.9 (A:4-71) Trans 16.0 22 0.0016 21.5 0.9 54 110-163 2-60 (68)
9 d1oqya1 a.5.2.1 (A:160-200) DN 11.1 19 0.0014 20.9 -0.6 18 156-173 3-21 (41)
10 d1sfua_ a.4.5.19 (A:) 34L {Yab 10.2 43 0.0031 21.8 1.0 24 12-35 41-66 (70)
No 1
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.15 E-value=13 Score=22.47 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHcCCCC
Q psy15859 10 GTIFTRVTGLLRAGAMN 26 (175)
Q Consensus 10 GtIftRts~LLrsG~lk 26 (175)
.+|..|++.|.+.|+|+
T Consensus 32 ~~v~~Ri~~L~~~giI~ 48 (60)
T d2cyya1 32 STIHERIRKLRESGVIK 48 (60)
T ss_dssp HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHCCCeE
Confidence 57999999999999997
No 2
>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=28.98 E-value=70 Score=21.73 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=44.6
Q ss_pred hhhHHHHHH--HHhhCCCCCccc--------------cCCCCCCCchhhhhHHH-HHhhhcCC-CCChHHHHHHHHHHHH
Q psy15859 63 PEDSIRAKL--HKALGKKMPGYN--------------LLEKNRPTVSQKIILQT-LQHQKEDP-SLSEDEALAKAIETYN 124 (175)
Q Consensus 63 ~ED~IRAkF--ykqy~~~~~p~~--------------Ls~pk~~s~~q~F~vek-y~~l~q~g-~Ld~Esvfq~T~~lL~ 124 (175)
..+.|++.| |.+||.+. .-+ |.+.+..+.+ - ++. |...+..+ .+|=++ |+.+|..|.
T Consensus 3 ~~~~l~~~F~aF~~FG~~~-~~em~~~~f~Kl~kdc~lid~K~~T~t--d-vDIiF~K~k~k~~ri~f~~-F~~aL~~lA 77 (103)
T d1pula1 3 DDADVKKRWDAFTKFGAAT-ATEMTGKNFDKWLKDAGVLDNKAITGT--M-TGIAFSKVTGPKKKATFDE-TKKVLAFVA 77 (103)
T ss_dssp CHHHHHHHHHHHHHHTCSS-SSCCCHHHHHHHHHHHTSCCSSSSCHH--H-HHHHHHHHTCSSSCCCHHH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCC-CcCCCHHHHHHHHHHcCCCcCCCCCcc--c-hhhhhHhhcCCCCCcCHHH-HHHHHHHHH
Confidence 356788888 78888644 222 3344333333 1 333 66666666 576665 788888888
Q ss_pred HhhhhhccCCCcccc
Q psy15859 125 SEIRQVKADDIPEDF 139 (175)
Q Consensus 125 ~e~~~~~~~~~~e~~ 139 (175)
.++-....++..|++
T Consensus 78 ~~k~~~~~~~~eea~ 92 (103)
T d1pula1 78 EDRARQSKKPIQDEL 92 (103)
T ss_dssp HHHHHHHTCCHHHHH
T ss_pred HHhcccccccHHHHH
Confidence 888776666655554
No 3
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.90 E-value=25 Score=21.15 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHcCCCC
Q psy15859 10 GTIFTRVTGLLRAGAMN 26 (175)
Q Consensus 10 GtIftRts~LLrsG~lk 26 (175)
.+|..|+..|.+.|+|+
T Consensus 32 ~~v~~Ri~~L~~~giI~ 48 (60)
T d1i1ga1 32 TAVRKRVKALEEKGIIE 48 (60)
T ss_dssp HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHCCCeE
Confidence 47999999999999997
No 4
>d1wm8a_ g.3.7.2 (A:) Neurotoxin bmp03 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=20.20 E-value=16 Score=19.92 Aligned_cols=8 Identities=63% Similarity=1.497 Sum_probs=6.3
Q ss_pred ccCCCCCC
Q psy15859 168 FDRGSCNC 175 (175)
Q Consensus 168 ~~~~~~~~ 175 (175)
-|.|-|||
T Consensus 19 c~dgvcnc 26 (28)
T d1wm8a_ 19 CDDGVCNC 26 (28)
T ss_dssp CCSSSCCC
T ss_pred ccCccccc
Confidence 46788888
No 5
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=20.03 E-value=11 Score=22.96 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHHHhhhhhccCCCccccC---CCCccccCCccchHHHHHHhhhhhcc
Q psy15859 110 LSEDEALAKAIETYNSEIRQVKADDIPEDFN---KPKFGYYKTKPSLANEFKRAVETKVD 166 (175)
Q Consensus 110 Ld~Esvfq~T~~lL~~e~~~~~~~~~~e~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~ 166 (175)
|+-+.+++.|..++.+.- ..-..++-+..+ -.=+-|+++|..|+....+.....++
T Consensus 1 l~R~~Il~aa~~l~~~~G-~~ti~~Ia~~agvs~~~iY~~F~~K~~L~~~v~~~~~~~~~ 59 (65)
T d2g7ga1 1 LDRERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREID 59 (65)
T ss_dssp CCHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcC-CCCHHHHHHHhCccccchhhcCCCHHHHHHHHHHHHHHHHH
Confidence 567889999999998865 333333334333 22356789999999887776665543
No 6
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=18.02 E-value=21 Score=21.73 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHcCCCC
Q psy15859 10 GTIFTRVTGLLRAGAMN 26 (175)
Q Consensus 10 GtIftRts~LLrsG~lk 26 (175)
.||..|++.|...|+|+
T Consensus 34 ~tv~~Ri~~L~~~giI~ 50 (63)
T d2cfxa1 34 PSVTERVRQLESFGIIK 50 (63)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCee
Confidence 57999999999999996
No 7
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=16.54 E-value=23 Score=21.44 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHcCCCC
Q psy15859 10 GTIFTRVTGLLRAGAMN 26 (175)
Q Consensus 10 GtIftRts~LLrsG~lk 26 (175)
.+|..|+..|.+.|+|+
T Consensus 34 ~~v~~Ri~rL~~~GiI~ 50 (63)
T d2cg4a1 34 ETIHVRVEKMKQAGIIT 50 (63)
T ss_dssp HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHCCCeE
Confidence 47999999999999997
No 8
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=15.96 E-value=22 Score=21.50 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHh--hhhhccCCCccccC---CCCccccCCccchHHHHHHhhhh
Q psy15859 110 LSEDEALAKAIETYNSE--IRQVKADDIPEDFN---KPKFGYYKTKPSLANEFKRAVET 163 (175)
Q Consensus 110 Ld~Esvfq~T~~lL~~e--~~~~~~~~~~e~~~---~~~f~~~~~~~~~~~~~~~~~~~ 163 (175)
++-|.+++.|+.++.++ ....-..++-++.. -.-+-|+++|..|+...-+....
T Consensus 2 ~tr~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~ 60 (68)
T d1z0xa1 2 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEE 60 (68)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCccccCHHHHHHHHCcchhHHHHhcCCHHHHHHHHHHHHHh
Confidence 67789999999999763 45555556655543 33366889999998876655444
No 9
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=19 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHhhhhhccc-ccCCCC
Q psy15859 156 EFKRAVETKVDM-FDRGSC 173 (175)
Q Consensus 156 ~~~~~~~~~~~~-~~~~~~ 173 (175)
+|.+++.+-++| |+|..|
T Consensus 3 ~~e~~i~~L~~MGF~~~~a 21 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERV 21 (41)
T ss_dssp THHHHHHHHHTTTCCSHHH
T ss_pred hHHHHHHHHHHcCCCHHHH
Confidence 567788888887 666543
No 10
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=10.16 E-value=43 Score=21.79 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCC--CCCCCccee
Q psy15859 12 IFTRVTGLLRAGAMN--VNEKPIWYD 35 (175)
Q Consensus 12 IftRts~LLrsG~lk--~~ekPlWYD 35 (175)
|-.=.-+|.++|.+. ...-|+||-
T Consensus 41 VNr~LY~L~~~G~v~~~~~tPP~W~~ 66 (70)
T d1sfua_ 41 INQQLYKLQKEDTVKMVPSNPPKWFK 66 (70)
T ss_dssp HHHHHHHHHHTTSEEEECCSSCEEEE
T ss_pred HHHHHHHHHHCCCeecCCCcCCcccc
Confidence 444455789999986 445599985
Done!