RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15859
(175 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.018
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 37/186 (19%)
Query: 26 NVNEKPIWY-DVYRAFPPK-VEPLYSRPIADVPIKEIIYPE--DSIRAKLHKALGKKMPG 81
E Y D+ F V+ + + D+P K I+ E D I G
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 82 YNLLEKNRPTVSQ----------KIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVK 131
+ LL K V + K ++ ++ ++ PS+ + + YN K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 132 AD-DIPEDFNKPKFGYYKTKP---------------SLANEFKRAVETKVDMFDR----- 170
+ + + K + + +P +A + + + + M +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 171 -GSCNC 175
+CN
Sbjct: 189 LKNCNS 194
Score = 30.2 bits (67), Expect = 0.36
Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 50/172 (29%)
Query: 26 NVNEKPIWYDVYRAFPPKV----EPLYS-RPIADVPI-------KEIIYPEDSIRAKLHK 73
N N+ Y+V R + L RP +V I K + ++ L
Sbjct: 121 NDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLSY 174
Query: 74 ALGKKMPG--Y--NLLEKNRPTVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQ 129
+ KM + NL N P + +LQ L +Q + S + + +S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 130 VKADDIPEDFNKPKFGYYKTKPSLANEFKRA------VETK--VDMFDRGSC 173
++ K+KP ++ V+ + F+ SC
Sbjct: 234 LR-------------RLLKSKP-----YENCLLVLLNVQNAKAWNAFN-LSC 266
Score = 28.3 bits (62), Expect = 1.7
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 8 KIGTIFTRVTGLLRAGAMNVNEKPIWYDVYRAFPPKVEPLYSRPIADVPIKEII--YPED 65
KI R + ++ Y+ + +P Y R + I + + E+
Sbjct: 506 KI-----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIEEN 558
Query: 66 SIRAK----LHKALGKKMPGYNLLEKNR 89
I +K L AL + E ++
Sbjct: 559 LICSKYTDLLRIALMAEDEAI-FEEAHK 585
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 31.7 bits (72), Expect = 0.11
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 12/108 (11%)
Query: 47 LYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQTLQHQKE 106
LYS ++ + + A + LL+ P V + T K+
Sbjct: 388 LYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK-KK 446
Query: 107 DPSLSEDEALAKAIETYN---SEIRQVKADDI--------PEDFNKPK 143
L +E + KAI E R ++ DD P F
Sbjct: 447 MFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT 494
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 28.9 bits (65), Expect = 0.95
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 114 EALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKP 151
+AL + + YNS + D DF +P +
Sbjct: 459 KALTETVARYNSLVSS-GKDT---DFERPNLPRALNEG 492
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 114 EALAKAIETYNSEIRQVKADDIPEDFNKPKFG 145
LAK + YN + D F +
Sbjct: 454 ADLAKTVSDYNGYVAS-GKDT---AFGRADMP 481
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.7
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 34/118 (28%)
Query: 2 ASSRLEKIGTIFTRVTGLLRAGAMNVNEKPIWY-----DVYRAFPPKVEPLYSR------ 50
++ IF G G N ++ Y D+Y+ + V L
Sbjct: 149 VGEGNAQLVAIF----G----GQGNTDD----YFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 51 PIADVPIK-EIIYPE--DSIRAKLHKALGKKMPGYNLLEKNRPTVSQKII--LQTLQH 103
+ + E ++ + + I L P + L +S +I +Q L H
Sbjct: 197 ELIRTTLDAEKVFTQGLN-ILEWLENP--SNTPDKDYL--LSIPISCPLIGVIQ-LAH 248
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 27.4 bits (61), Expect = 3.3
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 114 EALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKP 151
LAK + YN ++ D F +P
Sbjct: 459 AELAKTVTAYNGFVKS-GKDA---QFERPDLPRELVVA 492
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E*
1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E*
1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C
1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Length = 246
Score = 26.9 bits (59), Expect = 3.5
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 31 PIWYDVYRAFPPKVEPLYSRPIADVPIKEIIYPEDSIRAKLHKALGKKMPGYNLLEKNRP 90
P A PPK E S D+ KE S A A G+ P
Sbjct: 81 PQAVKGRSAHPPKTEKDRSL---DLNDKERQLAVRSALAATADADLVADRGHEFDRDEVP 137
Query: 91 TVSQKIILQTLQHQKEDPSLSEDEALAKAIETYNSEIRQVKADDIPEDFNKPK 143
V ++ Q+ L + A ++I+ + + +P
Sbjct: 138 VVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPA 190
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.1 bits (58), Expect = 8.0
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 114 EALAKAIETYNSEIRQVKADDIPEDFNKP 142
AL +E YN + +D +K
Sbjct: 400 GALQSTVEVYNKHAAE-GSDP---LLHKK 424
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,710,282
Number of extensions: 156990
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 16
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)