RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15859
         (175 letters)



>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 133

 Score = 28.3 bits (63), Expect = 0.31
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 66  SIRAKLHKALGKKMPGYNLLEKNRPTVSQKIILQ--TLQHQKEDPSLSEDEALAKAIETY 123
           +++A+L   L        L++  R TV QKII Q   L    +  +  E     +   + 
Sbjct: 59  AVKAQLDPPL------LALVKSGRLTVGQKIITQGAELVGSPDACAPLEAPDSLRLKISA 112

Query: 124 NSEIRQVKADDIPEDFNKPKFGYYKT 149
           NS  R  +           K G++  
Sbjct: 113 NS-TRPARWHS--------KLGFFHD 129


>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 98

 Score = 25.7 bits (56), Expect = 1.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 109 SLSEDEALAKAIETYNSE 126
           +LS  EA+ +A++  N +
Sbjct: 1   ALSYREAVLRAVDRLNEQ 18


>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 99  QTLQHQKEDPSLSED-----EALAKAIETYNSEIRQVKADDIPEDFNKPKFGYYKTKPSL 153
           Q L  Q ED  L        +AL         E+   +    P D      GYY     L
Sbjct: 668 QALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGK--PVDIA----GYYHPNTDL 721

Query: 154 ANEFKRAVET 163
            ++  R   T
Sbjct: 722 TSKAMRPSAT 731


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 661,003
Number of extensions: 30256
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 7
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)