BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1586
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 278/425 (65%), Gaps = 7/425 (1%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S IVF S E+ + ++E + + P+ GWVE +P I + V E + L ++
Sbjct: 13 SSRAIVFDHS-GEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA---LTRGNLT 68
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
DI A+GITNQRET +VWD TTGKP+YNAIVW D RT+ IVD + +I G
Sbjct: 69 HEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGD-EGAEKYKSIVG 127
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
LP++TYFS K+ W++DNV+ + + LFG D+W++WN+TGG +GG+H+TDVTNA
Sbjct: 128 LPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGGVHVTDVTNA 187
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLK-DGPLQGVPISGILGDQQ 240
SRT+LM+L TL W + IP +LP IRSSSE+YG + G + GVPI+GILGDQQ
Sbjct: 188 SRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPGVPIAGILGDQQ 247
Query: 241 SALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGS 300
+A GQ+C + GQAKNTYGTG FLL NTGT V S GLLTTV Y+ G AP YALEGS
Sbjct: 248 AATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG-DAPAVYALEGS 306
Query: 301 IAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIIC 360
IAV G +WLRDNL + D ++E L K + FVPAFSGL+APYW+ DAR +
Sbjct: 307 IAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPDARGALV 366
Query: 361 GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420
GLT ++ I +AALEA FQ+R++++AM D GV L +L VDGGM AN+ LMQ QAD
Sbjct: 367 GLTRYVNRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQ 426
Query: 421 TGTPV 425
G V
Sbjct: 427 LGVDV 431
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 267/431 (61%), Gaps = 11/431 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
+ S V + +++ + E E + PK GWVE DPM I + V L DI+
Sbjct: 14 TSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADIS 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
+ I AIGITNQRETTIVW+ TGKP+YNAIVW RT I + + + ++ + G
Sbjct: 71 SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE-HLKRDGLEDYIRSNTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFS K+ W++D+V+ + + + LFGTVD+WLIW +T G +H+TD TNA
Sbjct: 130 LVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ TL W+ ++L+ +IP ++LP++R SSE+YG G G +PISGI GDQ
Sbjct: 187 SRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ C++ G AKNTYGTGCF+L NTG V S GLLTT+A G + YALEG
Sbjct: 247 QAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
++ +AG + +WLRD + +I D + E K + V VPAF+GL APYW AR I
Sbjct: 305 AVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAI 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT + I++A LE++ +QTRD+LEAM+ D G+ L L VDGG AN +LMQ Q+D
Sbjct: 365 FGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSD 424
Query: 420 LTGTPVSSSPI 430
+ GT V +
Sbjct: 425 ILGTRVERPEV 435
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 267/431 (61%), Gaps = 11/431 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
+ S V + +++ + E E + PK GWVE DPM I + V L DI+
Sbjct: 14 TSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLTKADIS 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
+ I AIGITNQRETTIVW+ TGKP+YNAIVW RT I + + + ++ + G
Sbjct: 71 SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE-HLKRDGLEDYIRSNTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFS K+ W++D+V+ + + + LFGTVD+WLIW +T G +H+TD TNA
Sbjct: 130 LVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ TL W+ ++L+ +IP ++LP++R SSE+YG G G +PISGI GDQ
Sbjct: 187 SRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ C++ G AKNTYGTGCF+L NTG V S GLLTT+A G + YALEG
Sbjct: 247 QAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
++ +AG + +WLRD + +I D + E K + V VPAF+GL APYW AR I
Sbjct: 305 AVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAI 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT + I++A LE++ +QTRD+LEAM+ D G+ L L VDGG AN +LMQ Q+D
Sbjct: 365 FGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSD 424
Query: 420 LTGTPVSSSPI 430
+ GT V +
Sbjct: 425 ILGTRVERPEV 435
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 267/431 (61%), Gaps = 11/431 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
+ S V + +++ + E E + PK GWVE DPM I + V L DI+
Sbjct: 14 TSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTL---VEVLAKADIS 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
+ I AIGITNQRETTIVW+ TGKP+YNAIVW RT I + + + ++ + G
Sbjct: 71 SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE-HLKRDGLEDYIRSNTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFS K+ W++D+V+ + + + LFGTVD+WLIW +T G +H+TD TNA
Sbjct: 130 LVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ TL W+ ++L+ +IP ++LP++R SSE+YG G G +PISGI GDQ
Sbjct: 187 SRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ C++ G AKNTYGTGCF+L NTG V S GLLTT+A G + YALEG
Sbjct: 247 QAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
++ +AG + +WLRD + +I D + E K + V VPAF+GL APYW AR I
Sbjct: 305 AVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAI 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT + I++A LE++ +QTRD+LEAM+ D G+ L L VDGG AN +LMQ Q+D
Sbjct: 365 FGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSD 424
Query: 420 LTGTPVSSSPI 430
+ GT V +
Sbjct: 425 ILGTRVERPEV 435
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/431 (45%), Positives = 266/431 (61%), Gaps = 11/431 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
+ S V + +++ + E E + PK GWVE DPM I + V L DI+
Sbjct: 14 TSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADIS 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
+ I AIGITNQRETTIVW+ TGKP+YNAIVW RT I + + + ++ + G
Sbjct: 71 SDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE-HLKRDGLEDYIRSNTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFS K+ W++D+V+ + + + LFGTVD+WLIW +T G +H+TD TNA
Sbjct: 130 LVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ TL W+ ++L+ +IP ++LP++R SSE+YG G +PISGI GDQ
Sbjct: 187 SRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGGTRIPISGIAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ C++ G AKNTYGTGCF+L NTG V S GLLTT+A G + YALEG
Sbjct: 247 QAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
++ +AG + +WLRD + +I D + E K + V VPAF+GL APYW AR I
Sbjct: 305 AVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAI 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT + I++A LE++ +QTRD+LEAM+ D G+ L L VDGG AN +LMQ Q+D
Sbjct: 365 FGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSD 424
Query: 420 LTGTPVSSSPI 430
+ GT V +
Sbjct: 425 ILGTRVERPEV 435
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/408 (48%), Positives = 252/408 (61%), Gaps = 11/408 (2%)
Query: 20 KVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIV 79
K E L PK GWVE DP L + E + L +++A+GITNQRETT++
Sbjct: 30 KREFRQLYPKPGWVEHDP---LEIWETTLWAAREVLRRAGAEAGEVLALGITNQRETTLL 86
Query: 80 WDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDN 139
WD TGKPL+NAIVW D RT + + +K F GL YFS KL WL++N
Sbjct: 87 WDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRER-TGLLFDPYFSGTKLVWLLEN 145
Query: 140 VDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLL 199
V +K + FGTVD+WLIWNLTGG +H TD TNASRTLL NL TL W+P+LL
Sbjct: 146 VPGLKARAEGGGVAFGTVDTWLIWNLTGGK---VHATDPTNASRTLLFNLHTLAWDPELL 202
Query: 200 KFFNIPSQILPQIRSSSEIYG-CLKDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTY 258
+ IP+ +LP++R S +G L + VPI G+LGDQQ+AL GQ+ L G+ K TY
Sbjct: 203 EALGIPAALLPEVRPSDGDFGETLPELLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTY 262
Query: 259 GTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNII 318
GTG FLL NTG V S +GLL TVA+ G RA TYALEGS+ VAG WL++ + +I
Sbjct: 263 GTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRA--TYALEGSLFVAGAAVGWLKE-VGLI 319
Query: 319 ADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEA 378
+ E+E+L DV FVPAF+GL APYW AR + GLT TS+ + +AALE
Sbjct: 320 RESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEG 379
Query: 379 VCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426
V FQ RD++ AM+E+ GV L+ L DGGM N+ +++QADL G PV+
Sbjct: 380 VAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVA 427
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 15 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 71 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 130 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 187 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYAFYGSEVPIAGMAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 247 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 305 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 365 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 424
Query: 420 L 420
+
Sbjct: 425 I 425
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 16 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 71
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 72 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 130
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 131 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 187
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 188 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYEFYGSEVPIAGMAGDQ 247
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 248 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 305
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 306 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 365
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 366 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 425
Query: 420 L 420
+
Sbjct: 426 I 426
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 15 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 70
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 71 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 129
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 130 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 186
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 187 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIAGMAGDQ 246
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 247 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 304
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 305 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 364
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 365 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 424
Query: 420 L 420
+
Sbjct: 425 I 425
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 28 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 83
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 84 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 142
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 143 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 199
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 200 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIAGMAGDQ 259
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 260 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 317
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 318 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 377
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 378 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 437
Query: 420 L 420
+
Sbjct: 438 I 438
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 16 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 71
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 72 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 130
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 131 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 187
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 188 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIAGMAGDQ 247
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 248 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 305
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 306 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 365
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 366 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 425
Query: 420 L 420
+
Sbjct: 426 I 426
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 256/421 (60%), Gaps = 12/421 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S I+F + ++ + K E PK GWVE + I + V+ I G ++ I
Sbjct: 11 SSRAIIFDRNGKKIGSSQK-EFPQYFPKSGWVEHNANEIWNSVQSVI---AGAFIESGIR 66
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P I IGITNQRETT+VWD TTG+P+ NAIVW ++ I D +T + G
Sbjct: 67 PEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVD-GHTEMIHEKTG 125
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L I YFSA K+ WL+DN++ + + + LFGT+DSWL+W LT DG +H+TD +NA
Sbjct: 126 LVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNA 182
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRT+L N+ L+W+ ++L NIPS +LP+++S+SE+YG + G VPI+G+ GDQ
Sbjct: 183 SRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIAGMAGDQ 242
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ + G KNTYGTG F++ NTG S LLTT+ Y G + YALEG
Sbjct: 243 QAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKVYYALEG 300
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI VAG +WLRD L +I + E L K+ +V VPAF+GL APYW +AR +
Sbjct: 301 SIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAV 360
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T+K D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 361 FGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 420
Query: 420 L 420
+
Sbjct: 421 I 421
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 180/431 (41%), Positives = 248/431 (57%), Gaps = 11/431 (2%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
+ S + E+ + E + P+ GWVE D I V + + + D+
Sbjct: 16 TSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEVIN---ENDVR 72
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
+ I IGITNQRETT+VWD TG+P+Y+AIVW +T+SI + TF G
Sbjct: 73 ADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQTFRDK-TG 131
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
L + YF+ K+ W++DNV+ + ++ LFGT+D+WL+W L+G HITD +NA
Sbjct: 132 LLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKA---AHITDYSNA 188
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGILGDQ 239
SRTL N+ L+W+ +LL+ +P LP++++SSE+YG D G VPI+G+ GDQ
Sbjct: 189 SRTLXFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTIDYHFYGQEVPIAGVAGDQ 248
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ+C + G KNTYGTG F L NTG V S GLLTT+AY G + YALEG
Sbjct: 249 QAALFGQACFERGDVKNTYGTGGFXLXNTGDKAVKSESGLLTTIAY--GIDGKVNYALEG 306
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI V+G +WLRD L I + ES + S V VPAF GL PYW +AR I
Sbjct: 307 SIFVSGSAIQWLRDGLRXINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAI 366
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T K ++A LE++C+QTRD+ EA +D G+ ++ L VDGG N ++ Q QAD
Sbjct: 367 FGLTRGTEKEHFIRATLESLCYQTRDVXEAXSKDSGIDVQSLRVDGGAVKNNFIXQFQAD 426
Query: 420 LTGTPVSSSPI 430
+ T V I
Sbjct: 427 IVNTSVERPEI 437
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/403 (45%), Positives = 252/403 (62%), Gaps = 25/403 (6%)
Query: 28 PKEGWVEQDPMVI----LHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDST 83
P+ GWVE +P I L +++ I+ I PN I AIG+TNQRETT+VWD
Sbjct: 39 PRPGWVEHNPEEIWDAQLRAIKDAIQSA-------RIEPNQIAAIGVTNQRETTLVWDKD 91
Query: 84 TGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEV 143
GKPLYNAIVW RT +V+ K + T + GL YFSA KL WL+DNV +
Sbjct: 92 -GKPLYNAIVWQCRRTAEMVEEI--KREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGL 148
Query: 144 KNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFN 203
+ + + +FGTVD++LI+ LTG H+TD +NASRT+L N++ L W+ +LL+ F+
Sbjct: 149 REKAEKGEVMFGTVDTFLIYRLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFD 203
Query: 204 IPSQILPQIRSSSEIYGCLKDGPLQG-VPISGILGDQQSALVGQSCLQAGQAKNTYGTGC 262
IP +LP++R SSE+YG K L +P+SG GDQQ+AL GQ+ +AG K TYGTG
Sbjct: 204 IPESVLPEVRESSEVYGYTKKELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGS 263
Query: 263 FLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLN 322
F+L NT +++S LLTT+A+ R ++YALEGSI V G +WLRD + II +
Sbjct: 264 FILVNTDKMVLYSDN-LLTTIAWGLNGR--VSYALEGSIFVTGAAVQWLRDGIKIIKHAS 320
Query: 323 EIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQ 382
E E L K S+ V FVPAF GL APYW + AR II G+T T + + +A LEA+ +
Sbjct: 321 ETEELATKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYL 380
Query: 383 TRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
TRD+++ M++ V +++L VDGG TAN +LMQ QAD+ V
Sbjct: 381 TRDVVDEMEK--LVQIKELRVDGGATANDFLMQFQADILNRKV 421
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 260/434 (59%), Gaps = 15/434 (3%)
Query: 2 SKSTIVFAASTSELLTYHKVEL--ETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLD 59
++ST VF EL H L E K GW E DP+ I+ + + + + L D
Sbjct: 17 TQSTKVFFYD-EELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKD-K 74
Query: 60 INPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTI 119
I IGITNQRET I+WD TGKPLYNAIVW D R + +V +++K N +
Sbjct: 75 YTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNND-IQKK 133
Query: 120 CGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVT 179
G +TYFSA K+ WL+ N E+K I D + G +++WLI+NLT G TDVT
Sbjct: 134 TGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN----CYTDVT 189
Query: 180 NASRTLLMNLRTLQWEPQLLKFFNIPS-QILPQIRSSSEIYGCLKDGPLQ---GVPISGI 235
NASRTLLM++ TLQW+ ++ K FNI + +LP+I+S+ +G +K + +PI+G
Sbjct: 190 NASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGC 249
Query: 236 LGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITY 295
+GDQQSA +GQ+ G+AK TYGTG FLL NTG +V+S+ GL+TT+ Y+F Y
Sbjct: 250 IGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKY 309
Query: 296 ALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDA 355
ALEGSI AG WL N +I D +E +++K + T V+FVPAFSGLYAP W+ DA
Sbjct: 310 ALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDA 368
Query: 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVA-LEKLLVDGGMTANKYLM 414
R+ I G+T T + IV+A LE + FQ +I++++ D G+ L L DGGMT NK M
Sbjct: 369 RASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFM 428
Query: 415 QLQADLTGTPVSSS 428
Q +D+ T + S
Sbjct: 429 QFNSDIINTKIEVS 442
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 260/434 (59%), Gaps = 15/434 (3%)
Query: 2 SKSTIVFAASTSELLTYHKVEL--ETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLD 59
++ST VF EL H L E K GW E DP+ I+ + + + + L D
Sbjct: 13 TQSTKVFFYD-EELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKD-K 70
Query: 60 INPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTI 119
I IGITNQRET I+WD TGKPLYNAIVW D R + +V +++K N +
Sbjct: 71 YTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNND-IQKK 129
Query: 120 CGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVT 179
G +TYFSA K+ WL+ N E+K I D + G +++WLI+NLT G TDVT
Sbjct: 130 TGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN----CYTDVT 185
Query: 180 NASRTLLMNLRTLQWEPQLLKFFNIPS-QILPQIRSSSEIYGCLKDGPLQ---GVPISGI 235
NASRTLLM++ TLQW+ ++ K FNI + +LP+I+S+ +G +K + +PI+G
Sbjct: 186 NASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGC 245
Query: 236 LGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITY 295
+GDQQSA +GQ+ G+AK TYGTG FLL NTG +V+S+ GL+TT+ Y+F Y
Sbjct: 246 IGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKY 305
Query: 296 ALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDA 355
ALEGSI AG WL N +I D +E +++K + T V+FVPAFSGLYAP W+ DA
Sbjct: 306 ALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDA 364
Query: 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVA-LEKLLVDGGMTANKYLM 414
R+ I G+T T + IV+A LE + FQ +I++++ D G+ L L DGGMT NK M
Sbjct: 365 RASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFM 424
Query: 415 QLQADLTGTPVSSS 428
Q +D+ T + S
Sbjct: 425 QFNSDIINTKIEVS 438
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 331 bits (848), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 246/437 (56%), Gaps = 23/437 (5%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDP----MVILHLVEECIEKCVGYLVD 57
S IVF + ++ + E + PK GWVE DP ++ V+E IEK
Sbjct: 37 STRAIVFDGN-QKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKS------ 89
Query: 58 LDINPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLT 117
I NDI AIGITNQRET +VWD TGKP++NAIVW D RT + D K TF+
Sbjct: 90 -GITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVK 148
Query: 118 TICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITD 177
GL + YFS KLNWL+ NV + + FGT+D++LIW LTGG TD
Sbjct: 149 KT-GLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGE---CFCTD 204
Query: 178 VTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQG--VPISGI 235
TNASRTLL N+ W+ +L + +P + LP+++ + +G + D L G +PI G+
Sbjct: 205 ATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFG-VTDPSLFGAAIPILGV 263
Query: 236 LGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITY 295
GDQQ+A +GQ+C + G K+TYGTGCF L NTG V S LLTT+AY+ TY
Sbjct: 264 AGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGKDXVRSKNRLLTTIAYRLDGE--TTY 321
Query: 296 ALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDA 355
ALEGSI VAG +WLRD L +I + SL + + +V VPAF+GL AP+W DA
Sbjct: 322 ALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDA 381
Query: 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEK--LLVDGGMTANKYL 413
R I G T T + +AALEAVC+QTRD+LEA +D L VDGG A+ +
Sbjct: 382 RGAIFGXTRNTGPAEFARAALEAVCYQTRDLLEAXHKDWRRNGNDTVLRVDGGXVASDWT 441
Query: 414 MQLQADLTGTPVSSSPI 430
Q +DL PV I
Sbjct: 442 XQRLSDLLDAPVDRPVI 458
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 169/412 (41%), Gaps = 46/412 (11%)
Query: 29 KEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKPL 88
K G E+DP +I V+E I + I AI ++Q + I S + L
Sbjct: 41 KVGQAEEDPKLIFDAVQEIIFDLTQKI------DGKIAAISWSSQXHSLIGLGSDD-ELL 93
Query: 89 YNAIVWSDVRTKSIVDTYASKIKNTTFLTTI---CGLPISTYFSAVKLNWLMDNVDEVKN 145
N+I W+D KSIV KN F I G P KL WL + EV +
Sbjct: 94 TNSITWADNCAKSIV----QDAKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFS 149
Query: 146 AIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIP 205
+ + + ++I+ LTG + +TD T A+ T ++NL+TL W+ +LL I
Sbjct: 150 QAQK----WIGIKEYIIFRLTGKL-----VTDTTXAAGTGILNLKTLTWDQELLDILKIK 200
Query: 206 SQILPQIRSSSEIYGCLKDGPLQGVPISG----ILGDQQSAL--VGQSCLQAGQAKNTYG 259
+ LP+I +++ +K ++ + I ILG L +G + + + G
Sbjct: 201 KEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVG 260
Query: 260 TGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPIT-YALEGSIAVAGQTFKWLRDNLNII 318
T +G Q + A F A T Y L G + G F W R L
Sbjct: 261 T-------SGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTL--- 310
Query: 319 ADLNE-----IESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVK 373
D +E ++ + +++F+P G AP W +AR GLT K + +
Sbjct: 311 FDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRXHQKPEXAR 370
Query: 374 AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
A +E + F D + ++ + + GG + ++ QL A++ P+
Sbjct: 371 AVIEGIIFNLYDAASNLIKNTKKPVA-INATGGFLKSDFVRQLCANIFNVPI 421
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 179/434 (41%), Gaps = 45/434 (10%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S ++ E++ +L P W EQDP + + K +G L
Sbjct: 10 SGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAM-KALGDQHSL--- 65
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
D+ A+GI Q + D+ + L AI+W+D R +++ + +T
Sbjct: 66 -QDVKALGIAGQMHGATLLDAQQ-RVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLM 123
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
+P F+A KL W+ + E+ I +K L +L +TG +D+++A
Sbjct: 124 MP---GFTAPKLLWVQRHEPEIFRQI--DKVLL--PKDYLRLRMTGEF-----ASDMSDA 171
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL-----KDGPLQGVPISGIL 236
+ T+ +++ W +L+ ++ +P + SEI G L K + VP+
Sbjct: 172 AGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGG 231
Query: 237 GDQQSALVGQSCLQAGQAKNTYGT-GCFLLYNTGTAIVHSSQGLLT---TVAYQFGARAP 292
GD + VG + A QA + GT G + S+G L+ + + F P
Sbjct: 232 GDNAAGAVGVGMVDANQAMLSLGTSGVYFAV---------SEGFLSKPESAVHSFCHALP 282
Query: 293 ITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLV----QKSSSHTDVVFVPAFSGLYA 348
+ L + A W + L+ + +L+ Q S V F+P SG
Sbjct: 283 QRWHLMSVMLSAASCLDWAAK----LTGLSNVPALIAAAQQADESAEPVWFLPYLSGERT 338
Query: 349 PYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMT 408
P+ A+ + GLT + ++ +A LE V + D ++ + CG+ + + + GG
Sbjct: 339 PHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGA 397
Query: 409 ANKYLMQLQADLTG 422
++Y Q+ AD++G
Sbjct: 398 RSEYWRQMLADISG 411
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 88/417 (21%), Positives = 151/417 (36%), Gaps = 34/417 (8%)
Query: 27 TPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGK 86
+P GW E+DP + + + D P I +T ++ D G
Sbjct: 42 SPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGIC---VTGXLPAVVLLDD-RGA 97
Query: 87 PLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNA 146
L +I SD R V +++ + FL G ++ KL W+ + V A
Sbjct: 98 VLRPSIQQSDGRCGDEVAELRAEVDSEAFLAR-TGNGVTQQLVTAKLRWIERHEPAVFGA 156
Query: 147 IKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPS 206
I + ++ L G + D A ++L + E L+ +IP
Sbjct: 157 IATVCGSYDYINXLLT---------GERVVDRNWALEGGFIDLASGTVEADLVALAHIPP 207
Query: 207 QILPQIRSSSEIYGCLK------DGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGT 260
+P + + G + G G+P+ G D ++ + + G +G
Sbjct: 208 SAVPPAHPTHRVLGAVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRPGDVLLKFG- 266
Query: 261 GCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIAD 320
G IV S+ Y P YA G A G WL L A
Sbjct: 267 ------GAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCXAATGSALNWLAKLLAPEAG 320
Query: 321 ---LNEIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAAL 376
++++L + + D +V +P F G P A GL+ ++ + +A L
Sbjct: 321 EAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHLWRALL 380
Query: 377 EAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS--SSPIG 431
EAV R + A+ +D G A ++ G T ++ + AD+ PV ++P+G
Sbjct: 381 EAVALAFRHHV-AVLDDIGHAPQRFFASDGGTRSRVWXGIXADVLQRPVQLLANPLG 436
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 95/420 (22%), Positives = 158/420 (37%), Gaps = 47/420 (11%)
Query: 21 VELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80
+ LET G VEQD + +++ ++ + AI ++ Q + +
Sbjct: 34 IALETYGDGNGPVEQDAGDWY----DAVQRIASSWWQSGVDARRVSAIVLSGQXQNFLPL 89
Query: 81 DSTTGKPLYNAIVWSDVR---------TKSIVDTYASKIKNTTFLTTICGLPISTYFSAV 131
D +PL+ A+++SD R + D S ++N +I LP ++ A
Sbjct: 90 DQDH-EPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPXTAASI--LPKLVFWRA- 145
Query: 132 KLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRT 191
+ V KD +++ LTG H TD TNAS T L +
Sbjct: 146 SFPQAFGRLRHVVLGAKD----------YVVLRLTG-----RHATDRTNASTTGLYRPKD 190
Query: 192 LQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPISGILGDQQSALVG 245
W +LL + + P++ E G + + G + G P+ LGD +A +G
Sbjct: 191 DAWHVELLADYGFSLDLXPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLG 250
Query: 246 QSCLQAGQAKNTYGTGCFLLYNT-----GTAIVHSSQGLLTTVAYQFGARAPITYALEGS 300
L A GT +L T G V + L +A + AP+ A G+
Sbjct: 251 VGVLDDEDAYLHLGTTGWLARLTQTDPVGDXPVGTIFRLAGIIAGKTLQVAPVLNA--GN 308
Query: 301 IAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIIC 360
I T R + + + VQ + ++FVP P R +
Sbjct: 309 ILQWALTLVGHRPGEDCAEYFHXAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALL 368
Query: 361 GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420
G+T T++ I+ A LE R E + + V L K +V GG + +L + +L
Sbjct: 369 GVTGATTRAQILLAVLEGAALSLRWCAELLGXE-KVGLLK-VVGGGARSEAWLRXIADNL 426
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 99/469 (21%), Positives = 179/469 (38%), Gaps = 91/469 (19%)
Query: 10 ASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIG 69
A T EL+ + + + T DP +E E+ G +D+ A+
Sbjct: 24 AETGELVRFGQAKHPNGT------SVDPSYWWSAFQEAAEQAGGL--------DDVSALA 69
Query: 70 ITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIK----------------NT 113
+ Q+ ++ D+ G + +A +W+D + K+
Sbjct: 70 VGGQQHGXVILDNQ-GNVIRDAXLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQ 128
Query: 114 TFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTG------ 167
++ + P+++Y + K+ W+ +N E I CL WL W + G
Sbjct: 129 RWVKAVGSSPVASY-TLTKVAWVAENEPENVKKIA-AICL---PHDWLSWRIAGYGPVAE 183
Query: 168 GVDGGLH--ITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDG 225
G D L TD ++AS T+ + + ++ L+ ++ +S +E
Sbjct: 184 GEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAXVLEAAEGAKAAQSHAEA------- 236
Query: 226 PLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVA- 284
+ + +LG + +A V AG KN G GC LL G +S GL V
Sbjct: 237 ----IVLPTVLGPRDAAPVKADPAIAG--KNVEG-GC-LLAPGGGDNAXASLGLGXAVGD 288
Query: 285 -----YQFGARAPI----TYALEGSIA-VAGQTFKWL---------------RDNLNIIA 319
G A I TY L G+++ A T +L R L +
Sbjct: 289 VSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALGV-- 346
Query: 320 DLNEIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDARSIICGLT-DETSKVDIVKAALE 377
D +E+ L S + + VP F G P + +A + G T T++ ++ +A +E
Sbjct: 347 DYDELAKLAFASKPGANGITLVPYFDGERTPN-RPNATATFSGXTLANTTRENLARAFVE 405
Query: 378 AVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426
+ RD LE ++ G ++ ++L+ GG ++ + L + G V+
Sbjct: 406 GLLCSQRDCLELIRS-LGASITRILLIGGGAKSEAIRTLAPSILGXDVT 453
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 345 GLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVD 404
GL Y+++D+ II ++ + I++ L+ ++ LEA+K + + LEKL D
Sbjct: 242 GLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQD 301
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 200 KFFNIP-SQILPQIRSSSEIYGCLKDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTY 258
KFF +QILP I +S++ GC G+ + + +Q+ V + L+AG +TY
Sbjct: 230 KFFAYEHAQILPDIXTSAKALGC-------GLSVGAFVINQK---VASNSLEAGDHGSTY 279
Query: 259 G 259
G
Sbjct: 280 G 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,551,926
Number of Sequences: 62578
Number of extensions: 515754
Number of successful extensions: 1301
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 26
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)