Query psy1586
Match_columns 431
No_of_seqs 162 out of 1132
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 23:12:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 3.6E-86 7.7E-91 632.2 35.5 420 1-430 15-435 (499)
2 PLN02295 glycerol kinase 100.0 2.5E-85 5.5E-90 672.4 44.0 424 1-430 10-445 (512)
3 PTZ00294 glycerol kinase-like 100.0 2.6E-84 5.7E-89 664.1 44.5 421 1-430 12-439 (504)
4 PRK00047 glpK glycerol kinase; 100.0 3E-83 6.4E-88 655.9 43.5 418 1-430 15-436 (498)
5 TIGR01311 glycerol_kin glycero 100.0 5.3E-82 1.2E-86 645.8 43.8 419 1-430 11-432 (493)
6 PRK15027 xylulokinase; Provisi 100.0 3.1E-82 6.7E-87 646.2 40.2 401 1-428 10-417 (484)
7 TIGR01314 gntK_FGGY gluconate 100.0 6.3E-82 1.4E-86 647.1 42.2 408 1-430 10-434 (505)
8 PRK10331 L-fuculokinase; Provi 100.0 1.4E-78 3E-83 617.1 38.6 401 1-430 12-422 (470)
9 TIGR01312 XylB D-xylulose kina 100.0 4.5E-78 9.7E-83 617.4 41.4 409 1-430 8-423 (481)
10 COG1070 XylB Sugar (pentulose 100.0 3.5E-78 7.5E-83 616.7 39.6 409 1-429 14-433 (502)
11 TIGR01234 L-ribulokinase L-rib 100.0 7.2E-78 1.6E-82 620.5 40.0 410 1-430 11-469 (536)
12 PRK04123 ribulokinase; Provisi 100.0 9.2E-78 2E-82 622.2 40.5 414 1-430 13-472 (548)
13 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.8E-78 6.1E-83 623.2 36.0 406 1-430 10-476 (541)
14 PRK10939 autoinducer-2 (AI-2) 100.0 2.3E-77 4.9E-82 615.1 37.2 407 1-430 13-442 (520)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 4.9E-77 1.1E-81 604.6 38.3 401 1-430 11-426 (465)
16 PLN02669 xylulokinase 100.0 3.2E-75 6.9E-80 599.0 38.4 407 1-430 18-478 (556)
17 TIGR02627 rhamnulo_kin rhamnul 100.0 1E-71 2.2E-76 564.4 32.0 396 1-429 8-419 (454)
18 PRK10640 rhaB rhamnulokinase; 100.0 7E-70 1.5E-74 551.5 31.0 392 6-429 3-407 (471)
19 KOG2517|consensus 100.0 7.2E-68 1.6E-72 518.5 32.5 427 1-430 16-447 (516)
20 COG1069 AraB Ribulose kinase [ 100.0 8.2E-66 1.8E-70 499.2 30.2 405 2-429 14-463 (544)
21 PF00370 FGGY_N: FGGY family o 100.0 2.6E-50 5.7E-55 376.2 20.3 230 1-245 10-245 (245)
22 KOG2531|consensus 100.0 1.8E-45 3.9E-50 347.0 27.7 405 1-429 19-474 (545)
23 PF02782 FGGY_C: FGGY family o 100.0 6.1E-30 1.3E-34 231.1 17.4 173 254-430 1-182 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.2 7.3E-06 1.6E-10 76.5 9.1 112 302-430 124-236 (248)
25 PRK13317 pantothenate kinase; 97.5 0.0037 8.1E-08 59.1 14.3 128 300-430 122-259 (277)
26 TIGR00241 CoA_E_activ CoA-subs 97.1 0.00073 1.6E-08 63.0 5.6 61 1-80 10-70 (248)
27 TIGR00555 panK_eukar pantothen 97.0 0.03 6.5E-07 52.7 14.9 121 299-422 126-256 (279)
28 COG1924 Activator of 2-hydroxy 97.0 0.0031 6.8E-08 60.5 8.4 119 295-430 255-375 (396)
29 TIGR03192 benz_CoA_bzdQ benzoy 96.6 0.025 5.3E-07 53.5 11.0 118 295-427 152-269 (293)
30 TIGR02259 benz_CoA_red_A benzo 96.4 0.022 4.8E-07 55.6 9.5 121 294-430 293-419 (432)
31 PLN02920 pantothenate kinase 1 96.2 0.17 3.7E-06 49.6 14.8 143 253-420 167-321 (398)
32 TIGR02261 benz_CoA_red_D benzo 96.1 0.04 8.7E-07 51.3 9.3 112 295-422 124-236 (262)
33 TIGR03286 methan_mark_15 putat 96.1 0.042 9.2E-07 54.1 9.9 118 298-430 270-388 (404)
34 PF03702 UPF0075: Uncharacteri 95.2 0.051 1.1E-06 53.3 6.9 59 367-429 258-317 (364)
35 PLN02902 pantothenate kinase 95.2 0.43 9.3E-06 51.3 14.0 144 253-421 216-371 (876)
36 COG0533 QRI7 Metal-dependent p 94.9 0.52 1.1E-05 45.3 12.3 117 303-429 159-296 (342)
37 PF03630 Fumble: Fumble ; Int 94.8 0.11 2.5E-06 50.4 7.9 142 252-418 157-309 (341)
38 PRK09585 anmK anhydro-N-acetyl 94.7 0.06 1.3E-06 52.7 5.9 58 366-427 259-316 (365)
39 PF11104 PilM_2: Type IV pilus 93.9 0.15 3.2E-06 49.9 6.8 62 368-429 244-306 (340)
40 TIGR02529 EutJ ethanolamine ut 93.0 0.23 5E-06 45.9 6.1 54 370-429 173-226 (239)
41 COG2377 Predicted molecular ch 92.9 0.26 5.5E-06 47.7 6.3 57 366-426 263-320 (371)
42 KOG2201|consensus 91.7 0.95 2E-05 43.0 8.3 127 292-420 193-328 (371)
43 PRK15080 ethanolamine utilizat 91.5 0.49 1.1E-05 44.6 6.4 55 369-429 199-253 (267)
44 PRK14878 UGMP family protein; 90.8 0.6 1.3E-05 45.3 6.5 62 366-429 212-276 (323)
45 TIGR00143 hypF [NiFe] hydrogen 90.6 0.39 8.5E-06 51.5 5.3 63 365-429 628-693 (711)
46 PRK09604 UGMP family protein; 90.5 1.5 3.2E-05 42.8 8.9 117 303-429 160-289 (332)
47 TIGR01175 pilM type IV pilus a 89.7 0.77 1.7E-05 44.9 6.3 61 369-429 253-314 (348)
48 PF00480 ROK: ROK family; Int 89.2 4 8.7E-05 35.5 10.0 74 2-98 8-82 (179)
49 TIGR00016 ackA acetate kinase. 89.1 9.8 0.00021 37.9 13.3 50 372-421 302-352 (404)
50 PRK09472 ftsA cell division pr 88.7 1 2.3E-05 45.4 6.5 61 368-428 293-359 (420)
51 COG5146 PanK Pantothenate kina 88.7 3.7 8.1E-05 37.3 9.1 114 299-414 171-294 (342)
52 PTZ00340 O-sialoglycoprotein e 88.2 1.3 2.8E-05 43.2 6.4 60 368-429 236-298 (345)
53 TIGR00329 gcp_kae1 metallohydr 88.0 1.2 2.6E-05 42.8 6.2 61 367-429 230-293 (305)
54 COG3426 Butyrate kinase [Energ 88.0 1.9 4E-05 40.3 6.9 58 370-427 269-328 (358)
55 PTZ00297 pantothenate kinase; 87.8 12 0.00027 43.7 14.9 54 366-421 1362-1416(1452)
56 TIGR03722 arch_KAE1 universal 87.6 1.5 3.2E-05 42.6 6.6 62 366-429 213-277 (322)
57 TIGR00744 ROK_glcA_fam ROK fam 87.3 4.8 0.0001 38.7 10.0 78 2-97 9-87 (318)
58 PRK11678 putative chaperone; P 86.9 2.5 5.4E-05 43.0 8.0 66 362-428 365-431 (450)
59 PRK00180 acetate kinase A/prop 86.8 16 0.00036 36.4 13.4 50 372-421 298-348 (402)
60 PRK13311 N-acetyl-D-glucosamin 86.8 5.4 0.00012 37.2 9.7 75 1-96 10-85 (256)
61 TIGR03723 bact_gcp putative gl 86.8 1.5 3.2E-05 42.4 6.0 61 367-429 231-294 (314)
62 CHL00094 dnaK heat shock prote 86.3 1.3 2.7E-05 47.3 5.7 30 397-426 328-357 (621)
63 PRK07157 acetate kinase; Provi 84.4 20 0.00044 35.6 12.6 49 372-420 295-344 (400)
64 TIGR01174 ftsA cell division p 84.4 2.3 4.9E-05 42.1 6.2 32 398-429 314-346 (371)
65 PRK13928 rod shape-determining 84.2 1.7 3.6E-05 42.4 5.1 63 367-429 240-307 (336)
66 PRK09557 fructokinase; Reviewe 84.1 6.7 0.00015 37.5 9.2 74 2-96 11-84 (301)
67 PRK12440 acetate kinase; Revie 83.6 24 0.00051 35.1 12.6 96 307-420 248-344 (397)
68 PRK13310 N-acetyl-D-glucosamin 83.2 8.2 0.00018 36.9 9.4 74 2-96 11-85 (303)
69 PRK12379 propionate/acetate ki 82.9 27 0.00058 34.8 12.7 48 372-420 293-341 (396)
70 PRK13410 molecular chaperone D 82.2 3.8 8.2E-05 44.0 7.2 30 397-426 328-357 (668)
71 PRK09698 D-allose kinase; Prov 81.8 10 0.00022 36.2 9.4 65 2-86 15-79 (302)
72 PRK09605 bifunctional UGMP fam 80.1 4.2 9.1E-05 42.5 6.6 61 367-429 217-280 (535)
73 PRK13929 rod-share determining 79.5 4.9 0.00011 39.2 6.4 29 400-428 281-309 (335)
74 TIGR00904 mreB cell shape dete 79.1 3.1 6.7E-05 40.5 4.9 30 400-429 282-311 (333)
75 PRK13927 rod shape-determining 78.7 3 6.6E-05 40.5 4.7 60 370-429 247-308 (334)
76 PRK00290 dnaK molecular chaper 77.4 3.9 8.4E-05 43.6 5.4 31 397-427 326-356 (627)
77 PRK13930 rod shape-determining 75.4 4.2 9.1E-05 39.5 4.7 59 371-429 252-312 (335)
78 PRK12397 propionate kinase; Re 75.0 63 0.0014 32.3 12.6 47 372-419 297-344 (404)
79 PRK05183 hscA chaperone protei 74.1 5.8 0.00013 42.2 5.6 30 397-426 328-357 (616)
80 PRK01433 hscA chaperone protei 73.8 7.1 0.00015 41.3 6.1 32 396-427 307-338 (595)
81 TIGR01991 HscA Fe-S protein as 73.7 5.9 0.00013 42.0 5.6 30 397-426 312-341 (599)
82 TIGR02350 prok_dnaK chaperone 73.4 9.7 0.00021 40.3 7.1 62 365-427 290-354 (595)
83 COG4972 PilM Tfp pilus assembl 72.6 12 0.00027 35.8 6.7 62 368-429 257-319 (354)
84 PF00012 HSP70: Hsp70 protein; 72.2 4.9 0.00011 42.5 4.6 31 397-427 328-358 (602)
85 COG1940 NagC Transcriptional r 72.1 27 0.00058 33.5 9.4 79 1-97 16-95 (314)
86 PF00871 Acetate_kinase: Aceto 72.1 23 0.00049 35.3 8.9 51 372-422 295-346 (388)
87 PF01869 BcrAD_BadFG: BadF/Bad 70.8 15 0.00033 34.4 7.2 60 1-70 8-67 (271)
88 PRK07058 acetate kinase; Provi 70.5 13 0.00029 36.8 6.7 95 307-421 248-343 (396)
89 PTZ00186 heat shock 70 kDa pre 70.5 7.7 0.00017 41.6 5.5 29 397-425 353-381 (657)
90 PF06723 MreB_Mbl: MreB/Mbl pr 70.3 11 0.00025 36.5 6.2 30 400-429 276-305 (326)
91 PTZ00400 DnaK-type molecular c 69.7 7.2 0.00016 41.9 5.1 30 397-426 367-396 (663)
92 KOG2708|consensus 69.6 70 0.0015 29.2 10.4 107 304-420 157-277 (336)
93 TIGR02707 butyr_kinase butyrat 66.5 25 0.00053 34.6 7.7 58 371-428 267-326 (351)
94 PF14574 DUF4445: Domain of un 65.6 12 0.00027 37.4 5.5 71 2-72 12-91 (412)
95 PRK03011 butyrate kinase; Prov 64.7 20 0.00043 35.3 6.7 57 371-427 269-327 (358)
96 COG0068 HypF Hydrogenase matur 62.4 19 0.0004 38.2 6.2 57 365-423 663-719 (750)
97 PLN03184 chloroplast Hsp70; Pr 61.6 23 0.00051 38.1 7.1 30 397-426 365-394 (673)
98 PRK13411 molecular chaperone D 60.0 28 0.0006 37.4 7.3 60 365-426 293-357 (653)
99 PF02543 CmcH_NodU: Carbamoylt 58.9 31 0.00068 34.0 7.0 62 366-429 133-196 (360)
100 TIGR02261 benz_CoA_red_D benzo 58.5 51 0.0011 30.9 7.9 63 1-77 11-74 (262)
101 KOG0103|consensus 57.2 25 0.00054 37.1 6.0 60 368-428 305-364 (727)
102 PF00814 Peptidase_M22: Glycop 57.2 36 0.00078 32.0 6.8 113 302-428 135-254 (268)
103 COG5012 Predicted cobalamin bi 56.8 20 0.00043 32.4 4.7 50 374-424 163-213 (227)
104 PRK05082 N-acetylmannosamine k 56.3 60 0.0013 30.7 8.4 54 2-74 12-65 (291)
105 PRK13329 pantothenate kinase; 56.0 38 0.00083 31.5 6.7 55 365-426 176-230 (249)
106 PF07736 CM_1: Chorismate muta 54.2 27 0.00059 28.2 4.6 37 35-74 13-49 (118)
107 TIGR03192 benz_CoA_bzdQ benzoy 54.1 50 0.0011 31.5 7.1 57 1-75 42-98 (293)
108 PTZ00009 heat shock 70 kDa pro 52.6 21 0.00045 38.3 5.0 29 397-425 332-361 (653)
109 KOG1794|consensus 50.4 69 0.0015 30.4 7.2 60 2-71 14-74 (336)
110 TIGR02707 butyr_kinase butyrat 48.9 56 0.0012 32.1 6.9 74 1-86 10-83 (351)
111 PF07592 DDE_Tnp_ISAZ013: Rhod 48.2 35 0.00076 32.6 5.1 71 351-429 142-221 (311)
112 PF05378 Hydant_A_N: Hydantoin 47.4 42 0.0009 29.4 5.2 69 2-87 10-78 (176)
113 COG0849 ftsA Cell division ATP 46.5 40 0.00086 33.9 5.5 60 369-429 293-352 (418)
114 smart00732 YqgFc Likely ribonu 45.6 59 0.0013 24.8 5.4 20 2-22 12-31 (99)
115 KOG2707|consensus 45.4 62 0.0013 31.5 6.2 54 367-421 272-329 (405)
116 PRK13321 pantothenate kinase; 44.5 45 0.00097 31.1 5.3 44 365-409 183-226 (256)
117 PF01869 BcrAD_BadFG: BadF/Bad 44.5 71 0.0015 29.8 6.7 48 370-417 193-240 (271)
118 TIGR00671 baf pantothenate kin 43.8 47 0.001 30.7 5.2 45 365-410 175-219 (243)
119 cd02185 AroH Chorismate mutase 43.8 38 0.00083 27.3 3.9 38 34-74 12-49 (117)
120 TIGR01796 CM_mono_aroH monofun 43.5 39 0.00084 27.3 3.9 38 34-74 12-49 (117)
121 PRK13326 pantothenate kinase; 43.2 46 0.00099 31.2 5.1 44 365-409 185-228 (262)
122 PRK13331 pantothenate kinase; 43.2 48 0.001 30.9 5.1 43 365-409 173-215 (251)
123 COG2971 Predicted N-acetylgluc 43.0 67 0.0014 30.6 6.1 56 1-67 15-71 (301)
124 TIGR03286 methan_mark_15 putat 42.9 79 0.0017 31.6 6.8 60 1-79 154-213 (404)
125 PRK13320 pantothenate kinase; 42.6 81 0.0017 29.2 6.6 54 365-426 173-226 (244)
126 COG1058 CinA Predicted nucleot 42.4 39 0.00085 31.5 4.4 31 398-428 61-93 (255)
127 PRK13327 pantothenate kinase; 41.6 56 0.0012 30.2 5.3 44 365-409 169-212 (242)
128 PRK13321 pantothenate kinase; 41.1 98 0.0021 28.8 7.0 55 1-72 10-64 (256)
129 PRK13322 pantothenate kinase; 41.1 56 0.0012 30.3 5.3 44 365-409 175-218 (246)
130 PRK13328 pantothenate kinase; 40.9 55 0.0012 30.5 5.3 44 365-409 183-226 (255)
131 PTZ00340 O-sialoglycoprotein e 40.4 91 0.002 30.5 6.8 65 3-73 13-79 (345)
132 COG5493 Uncharacterized conser 38.5 87 0.0019 27.7 5.6 60 362-430 169-230 (231)
133 PRK13318 pantothenate kinase; 37.9 62 0.0013 30.1 5.1 44 365-409 183-226 (258)
134 PRK13324 pantothenate kinase; 36.6 71 0.0015 29.9 5.2 43 366-409 184-226 (258)
135 TIGR03722 arch_KAE1 universal 35.7 1E+02 0.0023 29.7 6.5 64 4-73 11-75 (322)
136 PRK03011 butyrate kinase; Prov 35.6 64 0.0014 31.8 5.0 72 1-86 12-85 (358)
137 KOG0100|consensus 35.5 99 0.0022 30.7 6.0 26 397-422 362-387 (663)
138 PRK13318 pantothenate kinase; 35.1 1.6E+02 0.0034 27.4 7.4 55 1-72 10-64 (258)
139 COG0282 ackA Acetate kinase [E 33.4 5E+02 0.011 25.8 13.9 94 307-418 247-341 (396)
140 PRK08557 hypothetical protein; 33.3 52 0.0011 33.2 4.0 56 88-147 316-376 (417)
141 COG4820 EutJ Ethanolamine util 32.5 72 0.0016 28.6 4.2 53 372-430 207-259 (277)
142 TIGR00329 gcp_kae1 metallohydr 31.4 1.7E+02 0.0037 28.0 7.2 65 4-72 11-77 (305)
143 PRK09604 UGMP family protein; 30.9 1.5E+02 0.0032 28.8 6.7 65 4-72 14-80 (332)
144 COG2192 Predicted carbamoyl tr 29.2 1.1E+02 0.0024 31.7 5.5 56 369-429 262-318 (555)
145 PF14639 YqgF: Holliday-juncti 28.9 1.4E+02 0.003 25.4 5.3 19 2-21 20-38 (150)
146 COG1521 Pantothenate kinase ty 28.5 1.5E+02 0.0032 27.7 5.8 44 365-409 181-224 (251)
147 PHA02754 hypothetical protein; 28.4 1.1E+02 0.0024 21.2 3.7 41 43-86 15-55 (67)
148 COG0443 DnaK Molecular chapero 28.4 98 0.0021 32.7 5.2 31 397-427 309-339 (579)
149 COG0533 QRI7 Metal-dependent p 27.8 1.3E+02 0.0028 29.4 5.4 68 5-78 15-84 (342)
150 KOG0101|consensus 27.5 1E+02 0.0022 32.7 5.0 50 369-423 311-360 (620)
151 PF06189 5-nucleotidase: 5'-nu 27.3 28 0.00061 32.4 0.9 34 387-421 204-237 (264)
152 TIGR03492 conserved hypothetic 26.3 1.7E+02 0.0036 29.3 6.3 56 366-427 63-118 (396)
153 PF01968 Hydantoinase_A: Hydan 25.9 1E+02 0.0022 29.4 4.4 65 365-429 206-270 (290)
154 PF01191 RNA_pol_Rpb5_C: RNA p 25.2 42 0.0009 24.8 1.3 23 194-216 19-41 (74)
155 COG2012 RPB5 DNA-directed RNA 25.1 33 0.00072 25.4 0.7 21 196-216 27-47 (80)
156 COG0081 RplA Ribosomal protein 24.8 1.6E+02 0.0035 26.8 5.2 53 29-82 175-227 (228)
157 PRK09605 bifunctional UGMP fam 24.8 1.6E+02 0.0035 30.6 6.1 63 4-72 14-77 (535)
158 PRK14878 UGMP family protein; 24.0 2.3E+02 0.0051 27.3 6.6 63 4-73 11-74 (323)
159 COG1924 Activator of 2-hydroxy 23.6 2.1E+02 0.0045 28.4 5.9 60 1-79 145-204 (396)
160 PRK13371 4-hydroxy-3-methylbut 23.6 4.6E+02 0.01 26.1 8.5 54 376-429 267-321 (387)
161 PF14552 Tautomerase_2: Tautom 22.0 1.9E+02 0.004 21.8 4.3 58 334-404 11-70 (82)
162 PRK03670 competence damage-ind 21.6 1.3E+02 0.0028 28.0 4.1 31 398-428 61-93 (252)
163 PRK05905 hypothetical protein; 20.7 1.5E+02 0.0032 27.7 4.3 42 296-340 100-141 (258)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=3.6e-86 Score=632.21 Aligned_cols=420 Identities=48% Similarity=0.871 Sum_probs=395.4
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.|+|++||| ++|++++.++.+++.++|+|||+||||.++|+++..++++++++ +++.+.+|.+||||.|++++|+|
T Consensus 15 TssRaivfd-~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIGITNQRETtvvW 90 (499)
T COG0554 15 TSSRAIVFD-EDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIGITNQRETTVVW 90 (499)
T ss_pred cceeEEEEC-CCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEEeeccceeEEEE
Confidence 489999999 69999999999999999999999999999999999999999776 47889999999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+++|+|++|+|.|+|+|+.+.++++++. +..+.+.++||..+.|.|+..|+.|+.+|.|...++..++..+|.++..|
T Consensus 91 dk~tG~Pi~naIvWQdrRTa~~c~~L~~~-g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtW 169 (499)
T COG0554 91 DKETGKPIYNAIVWQDRRTADICEELKAD-GYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTW 169 (499)
T ss_pred eCCCCCCcccceeeeccchHHHHHHHHhc-chhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhh
Confidence 99999999999999999999999999987 43578999999999999999999999999999999988888999999999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccccCC-CCCCCcEEEecCch
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDG-PLQGVPISGILGDQ 239 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~g-l~~g~pV~~g~~D~ 239 (431)
|.|+|||. ..++||+||||+|+|||+++.+||+++|+.+|||+++||++.++.++.|.+..+ +...+||..-.||+
T Consensus 170 Liw~LTgg---~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g~~vPI~g~~GDQ 246 (499)
T COG0554 170 LIWKLTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAEVPITGVAGDQ 246 (499)
T ss_pred heeeccCC---ceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccCCceeeccccchh
Confidence 99999994 239999999999999999999999999999999999999999999999998653 45679999999999
Q ss_pred HHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCC
Q psy1586 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIA 319 (431)
Q Consensus 240 ~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~ 319 (431)
+||++|.||++||++..+.||++++.+.++.+++.++.+++++++|.++. .-.|.+||++..+|.+++|++|.+++.+
T Consensus 247 QAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~g--k~~YALEGsif~aGaavqWLrd~L~~i~ 324 (499)
T COG0554 247 QAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG--KVTYALEGSIFVAGAAVQWLRDGLGLID 324 (499)
T ss_pred HHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCC--eEEEEEecceeehhhHHHHHHHhcCccC
Confidence 99999999999999999999999999999998888888999999987642 4479999999999999999999988877
Q ss_pred CHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCc
Q psy1586 320 DLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALE 399 (431)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~ 399 (431)
+..+.+.+|.+++.++|++|.|.|.|..+|+||+++||.|+||+..++++|++||++|++||..|.++++|++..|.+++
T Consensus 325 ~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~ 404 (499)
T COG0554 325 DASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLT 404 (499)
T ss_pred chhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 88889999999988899999999999999999999999999999999999999999999999999999999998888899
Q ss_pred eEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 400 KLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 400 ~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
+++|-||+++|+++||+.||+||+||+++++
T Consensus 405 ~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~ 435 (499)
T COG0554 405 RLRVDGGASRNNFLMQFQADILGVPVERPVV 435 (499)
T ss_pred eEEEcCccccchhHHHHHHHHhCCeeecccc
Confidence 9999999999999999999999999999875
No 2
>PLN02295 glycerol kinase
Probab=100.00 E-value=2.5e-85 Score=672.36 Aligned_cols=424 Identities=53% Similarity=0.921 Sum_probs=373.2
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCC----eeEEEEecccce
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPND----IVAIGITNQRET 76 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~----I~~I~is~~~~~ 76 (431)
+|+|++||| .+|+++++++.+|+...|++|++||||++||+++++++++++++. +.++++ |.+|++|+|+++
T Consensus 10 ts~Ka~l~d-~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~i~~~i~aIg~s~q~~~ 85 (512)
T PLN02295 10 TSTRFIIYD-RDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKA---AAKGHNVDSGLKAIGITNQRET 85 (512)
T ss_pred CceEEEEEC-CCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCCccccccceEEEEEecCcce
Confidence 589999999 599999999999998889999999999999999999999998764 344455 899999999999
Q ss_pred EEEee-CCCCccccccceecCcccHHHHHHHHhhccC-hhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccc
Q psy1586 77 TIVWD-STTGKPLYNAIVWSDVRTKSIVDTYASKIKN-TTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLF 154 (431)
Q Consensus 77 ~v~~d-~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~ 154 (431)
+|+|| + +|+||+|+|+|+|.|+.++++++.+.++. .+.++++||+++++.++++||+||++|+|++|+++++++.+|
T Consensus 86 ~v~~dd~-~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~ 164 (512)
T PLN02295 86 TVAWSKS-TGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALF 164 (512)
T ss_pred EEEEECC-CCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEE
Confidence 99995 6 79999999999999999999999976532 345779999999999999999999999999998875555689
Q ss_pred cChhHHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccccCCCCC-CCcEE
Q psy1586 155 GTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQ-GVPIS 233 (431)
Q Consensus 155 ~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~gl~~-g~pV~ 233 (431)
++++|||.|+|||+.....+++|+|+||+|++||+++++|++++++.+||+.++||+++++++++|+|+..+.. |+||+
T Consensus 165 ~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~g~pV~ 244 (512)
T PLN02295 165 GTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKGWPLAGVPIA 244 (512)
T ss_pred EcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceeccccccccCCCcEE
Confidence 99999999999992000018999999999999999999999999999999999999999999999999776665 99999
Q ss_pred EecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHH
Q psy1586 234 GILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRD 313 (431)
Q Consensus 234 ~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~ 313 (431)
+|++|++|+++|+|+ ++|++.+++|||+++.+.++..+.....+....+++..++..|+.|.++++.+++|.+++|+++
T Consensus 245 ~g~~D~~aa~~G~G~-~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~ 323 (512)
T PLN02295 245 GCLGDQHAAMLGQRC-RPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRD 323 (512)
T ss_pred EEechHHHHHhhCcC-CCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHH
Confidence 999999999999999 9999999999998866655543333444555555554444448899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy1586 314 NLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKED 393 (431)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~ 393 (431)
.++...+++++++++++++++++++|+|||.|+|+|+||+++||+|+|++..|+++||+||++||+||.+|.+++.|++.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 324 NLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88643457788888888887789999999999999999999999999999999999999999999999999999999864
Q ss_pred -----cCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 394 -----CGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 394 -----~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.+.++++|+++||++||++|+||+||+||+||++++.
T Consensus 404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~ 445 (512)
T PLN02295 404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD 445 (512)
T ss_pred hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCc
Confidence 2347889999999999999999999999999998763
No 3
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=2.6e-84 Score=664.12 Aligned_cols=421 Identities=53% Similarity=0.936 Sum_probs=375.2
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCC--CeeEEEEecccceEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPN--DIVAIGITNQRETTI 78 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~I~~I~is~~~~~~v 78 (431)
+|+|++||| .+|++++.++.+++...+.+|++||||++||++++++++++++++. ..+. +|++|++|+|++++|
T Consensus 12 ts~Ka~l~d-~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~---~~~~~~~I~aIgis~q~~~~v 87 (504)
T PTZ00294 12 TSTRFIIFD-EKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR---EKGPSFKIKAIGITNQRETVV 87 (504)
T ss_pred CceEEEEEC-CCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC---CCCccCceEEEEeecCcceEE
Confidence 589999999 5999999999999988889999999999999999999999987642 2334 799999999999999
Q ss_pred EeeCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChh
Q psy1586 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVD 158 (431)
Q Consensus 79 ~~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~ 158 (431)
+||+++|+||+|+|+|+|+|+.++++++.+.++..+.++++||+++++.++++||+||++|+|++|++++++..++++++
T Consensus 88 ~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~ 167 (504)
T PTZ00294 88 AWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTID 167 (504)
T ss_pred EEECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHH
Confidence 99874599999999999999999999998876532567799999999999999999999999999998754345688999
Q ss_pred HHHHHHhcC--CCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCccccccc---CCCCCCCcEE
Q psy1586 159 SWLIWNLTG--GVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLK---DGPLQGVPIS 233 (431)
Q Consensus 159 d~l~~~LTG--~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~---~gl~~g~pV~ 233 (431)
|||.|+||| + +++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|. .|+++|+||+
T Consensus 168 dyl~~~LTG~~~-----~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~~~~~g~pV~ 242 (504)
T PTZ00294 168 TWLIWNLTGGKS-----HVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVPLLEGVPIT 242 (504)
T ss_pred HHHHHHhcCCce-----EEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhcCCCCCCcEE
Confidence 999999999 7 99999999999999999999999999999999999999999999999994 4788999999
Q ss_pred EecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHH
Q psy1586 234 GILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRD 313 (431)
Q Consensus 234 ~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~ 313 (431)
+|++|++|+++|+|++++|++.+++|||+++.+.+...+...+.+.+..++|..++..|+.|.+++++.++|.+++|+++
T Consensus 243 ~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~ 322 (504)
T PTZ00294 243 GCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRD 322 (504)
T ss_pred EEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHH
Confidence 99999999999999999999999999998865555433333444555545554332236689999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy1586 314 NLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKED 393 (431)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~ 393 (431)
.++...+++++++++.+++++++++|+|||.|+|+|+||+++||+|+|++.+|+++||+||++||++|.+|.+++.|++.
T Consensus 323 ~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~ 402 (504)
T PTZ00294 323 NMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKD 402 (504)
T ss_pred HhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98654568888888888888889999999999999999999999999999999999999999999999999999999875
Q ss_pred cCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 394 CGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 394 ~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.|.++++|+++||+++|++|+||+||+||+||++++.
T Consensus 403 ~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~ 439 (504)
T PTZ00294 403 AGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEM 439 (504)
T ss_pred hCCCcceEEEecccccCHHHHHHHHHHhCCceEecCc
Confidence 5878899999999999999999999999999998764
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=3e-83 Score=655.85 Aligned_cols=418 Identities=48% Similarity=0.854 Sum_probs=370.9
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| .+|+++++.+.+|+...+.+|++||||++||+++++++++++++ .+.++++|.+||+|+|++++|+|
T Consensus 15 ts~Ka~l~d-~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~~Igis~~~~~~v~~ 90 (498)
T PRK00047 15 TSSRAIIFD-HDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIAAIGITNQRETTVVW 90 (498)
T ss_pred CceEEEEEC-CCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEEecCcceEEEE
Confidence 589999999 59999999999999888999999999999999999999999865 35566789999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+++|+|++|+|+|+|+|+.++++++.+. ...++++++||+++++.++++||+||++|+|++|+++++...+|++++||
T Consensus 91 D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~-~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dy 169 (498)
T PRK00047 91 DKETGRPIYNAIVWQDRRTADICEELKRD-GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTW 169 (498)
T ss_pred ECCCCcCCcccceecccchHHHHHHHHhc-cchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHh
Confidence 96359999999999999999999999876 32355899999999999999999999999999999887555568899999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCccccccc--CCCCCCCcEEEecCc
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLK--DGPLQGVPISGILGD 238 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~--~gl~~g~pV~~g~~D 238 (431)
|.|+|||. ..+++|+|+||+|++||+++++|++++++.+||++++||+|+++++++|.|. .++.+||||++|++|
T Consensus 170 l~~~LTG~---~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~~l~~g~pV~~g~~D 246 (498)
T PRK00047 170 LVWKLTGG---KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVPIAGIAGD 246 (498)
T ss_pred HhhhhcCC---CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccccCCCCceEEEEccH
Confidence 99999974 0179999999999999999999999999999999999999999999999984 467789999999999
Q ss_pred hHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCc--eEEEcccccchhhHHHHHHHHcC
Q psy1586 239 QQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPI--TYALEGSIAVAGQTFKWLRDNLN 316 (431)
Q Consensus 239 ~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~w~~~~~~ 316 (431)
++|+++|+|++++|++.+++|||+++.+.+...+..++.+....+++. .++ .|.++++++++|.+++|+++.++
T Consensus 247 ~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~g~~l~W~~~~~~ 322 (498)
T PRK00047 247 QQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWG----IDGKVVYALEGSIFVAGSAIQWLRDGLK 322 (498)
T ss_pred HHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEE----cCCCcEEEEEeeHhhHHHHHHHHHHHhc
Confidence 999999999999999999999998866655433443444444444442 233 79999999999999999999886
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Q psy1586 317 IIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGV 396 (431)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~ 396 (431)
...+++++++++++++++++++|+|||.|+|+|+||+++||+|+|++.+|+++|++||++||+||.+|.+++.|++..|.
T Consensus 323 ~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~ 402 (498)
T PRK00047 323 IISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGI 402 (498)
T ss_pred CCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 43356778888888888889999999999999999999999999999999999999999999999999999999865588
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
++++|+++||++||++|+||+|||||+||++++.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~ 436 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERPVV 436 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEecCc
Confidence 8999999999999999999999999999998653
No 5
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=5.3e-82 Score=645.84 Aligned_cols=419 Identities=55% Similarity=0.927 Sum_probs=373.3
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| .+|++++..+.+++...+.+|++|||+++||+++++++++++++. ++++++|.+||+|+|++++|++
T Consensus 11 t~iKa~l~d-~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~---~~~~~~i~aIgis~~~~~~v~~ 86 (493)
T TIGR01311 11 TSSRAIVFD-KDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKA---GIKPDDIAAIGITNQRETTVVW 86 (493)
T ss_pred CceEEEEEC-CCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCChhheeEEEEecCcceEEEE
Confidence 589999999 699999999999998889999999999999999999999998763 5566789999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+++|+|++|+|+|+|+|+.++++++.+.++. +.++++||+++++.++++||+|+++|+||+|+++++.+.+|++++||
T Consensus 87 D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~-~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dy 165 (493)
T TIGR01311 87 DKATGKPLYNAIVWQDRRTASICEELKAEGYG-EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTW 165 (493)
T ss_pred ECCCCcCcccceeecccchHHHHHHHHHhcch-HHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHh
Confidence 97349999999999999999999999987653 67899999999999999999999999999999886434568899999
Q ss_pred HHHHhcC--CCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccccC-CCCCCCcEEEecC
Q psy1586 161 LIWNLTG--GVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD-GPLQGVPISGILG 237 (431)
Q Consensus 161 l~~~LTG--~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~-gl~~g~pV~~g~~ 237 (431)
|.|+||| + .++|+|+|++|+|||+++++|++++++.+|+++++||+|+++++++|.+.. ++++|+||++|++
T Consensus 166 l~~~LtG~~~-----~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~g~pV~~g~~ 240 (493)
T TIGR01311 166 LIWNLTGGKV-----HVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEIPITGVLG 240 (493)
T ss_pred hhhhccCCce-----EEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCCCceEEEecc
Confidence 9999999 7 999999999999999999999999999999999999999999999999943 7889999999999
Q ss_pred chHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCC
Q psy1586 238 DQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNI 317 (431)
Q Consensus 238 D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~ 317 (431)
|++|+++|+|++++|++.+++|||+++.+.++..+.....+....++|..+. .+.+|..+++..++|.+++|+++.++.
T Consensus 241 D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~g~~~~W~~~~~~~ 319 (493)
T TIGR01311 241 DQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGG-KKPVYALEGSVFVAGAAVQWLRDNLKL 319 (493)
T ss_pred cHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCC-CCceEEEEeehhhhHHHHHHHHHHhCC
Confidence 9999999999999999999999998866555443333334444445543210 001589999999999999999999875
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Q psy1586 318 IADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVA 397 (431)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~ 397 (431)
..+++++++++.+++++++++|+|||.|+|+|+||+++||+|+|++.+|+++|++||++||+||.+|.+++.|++..|.+
T Consensus 320 ~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~ 399 (493)
T TIGR01311 320 IKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGVE 399 (493)
T ss_pred CCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678888888777888899999999999999999999999999999999999999999999999999999998755888
Q ss_pred CceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 398 LEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 398 ~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
+++|+++||++||++|+||+|||||+||++++.
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~ 432 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV 432 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhcCCeeEecCC
Confidence 999999999999999999999999999998754
No 6
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=3.1e-82 Score=646.15 Aligned_cols=401 Identities=21% Similarity=0.351 Sum_probs=362.0
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| ++|+++++++.+|+...+.+|+.||||++||++++++++++.++. ..++|.+|+||+|+|+++++
T Consensus 10 ts~Ka~l~d-~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~I~aI~is~q~~~~v~~ 83 (484)
T PRK15027 10 SGVKVILLN-EQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQDVKALGIAGQMHGATLL 83 (484)
T ss_pred cceEEEEEc-CCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----CccceeEEEEecCCCceEEE
Confidence 589999999 599999999999998888999999999999999999999998753 34689999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+ +|+|++|+|+|+|+|+.++++++.+..+ .++++||+++++.++++||+||++|+|++|+++ .+|++++||
T Consensus 84 D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~~---~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~----~~~~~~~dy 155 (484)
T PRK15027 84 DA-QQRVLRPAILWNDGRCAQECALLEARVP---QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQI----DKVLLPKDY 155 (484)
T ss_pred CC-CcCCccccccccCccHHHHHHHHHHhcc---hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHh----hhhcChHHH
Confidence 99 7999999999999999999999988754 356899999999999999999999999999998 489999999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCcEEE
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPISG 234 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~pV~~ 234 (431)
|.|+|||+ .++|+|+|++|++||+++++|++++++.+||+.++||+++++++++|+| ++||+ +|||++
T Consensus 156 l~~~LTG~-----~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL~-~~pV~~ 229 (484)
T PRK15027 156 LRLRMTGE-----FASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVA 229 (484)
T ss_pred HHhhhcCC-----ccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhCCC-CCeEEe
Confidence 99999999 9999999999999999999999999999999999999999999999999 35997 699999
Q ss_pred ecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHH
Q psy1586 235 ILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDN 314 (431)
Q Consensus 235 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (431)
|++|++|+++|+|++++|++++++|||+++...+++... ...+....++ +..|+.|.+++...++|.+++|+++.
T Consensus 230 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~W~~~~ 304 (484)
T PRK15027 230 GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLS-KPESAVHSFC----HALPQRWHLMSVMLSAASCLDWAAKL 304 (484)
T ss_pred cccHHHHHHhccCcccCCcEEEEecCceEEEEecCCccc-Cchhceeecc----eecCCceEEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999887666553222 2222222222 24588899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy1586 315 LNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKED 393 (431)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~ 393 (431)
++. .+++++.+++.++| ++++++|+|||.|+|+|+||+++||+|+|++.+|+++||+||++||+||.+|.+++.|++
T Consensus 305 ~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~- 382 (484)
T PRK15027 305 TGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA- 382 (484)
T ss_pred hCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 864 35777877777766 888999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEcCCccChHHHHHHhhhcCCceEec
Q psy1586 394 CGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 394 ~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~ 428 (431)
.|.++++|+++||++||++|+||+||+||+||++.
T Consensus 383 ~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~ 417 (484)
T PRK15027 383 CGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYR 417 (484)
T ss_pred cCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEee
Confidence 58889999999999999999999999999999664
No 7
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=6.3e-82 Score=647.13 Aligned_cols=408 Identities=22% Similarity=0.356 Sum_probs=368.1
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| .+|+++++.+.+++...+.+|+.|||+++||+++++++++++++. +.+ .+|.+||||+|++++|+|
T Consensus 10 t~~K~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~---~~~-~~I~~Igis~~~~~~v~~ 84 (505)
T TIGR01314 10 TSTKAVLFE-ENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL---EDE-DEILFVSFSTQMHSLIAF 84 (505)
T ss_pred cceEEEEEc-CCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC---CCc-CceEEEEEecccceeEEE
Confidence 589999999 599999999999988788899999999999999999999998753 223 679999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+ +|+||+|+|+|+|+|+.++++++.+.++ .++++++||+++++.++++||+||++|+|++|+++ .+|++++||
T Consensus 85 D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~----~~~l~~~dy 158 (505)
T TIGR01314 85 DE-NWQPLTRLITWADNRAVKYAEQIKESKN-GFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKA----AKYLEIKGY 158 (505)
T ss_pred CC-CcCCcccceeccccchHHHHHHHHhhcC-HHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhh----cEEECHHHH
Confidence 99 7999999999999999999999988765 36789999999999999999999999999999987 489999999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCcEEE
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPISG 234 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~pV~~ 234 (431)
|.|+|||+ .++|+|+||+|++||+++++|++++++.+||++++|||++++++++|+| .+||++||||++
T Consensus 159 l~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~ 233 (505)
T TIGR01314 159 IFQRLFGT-----YKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGIQSSTPFVI 233 (505)
T ss_pred HHHHHcCC-----ceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhCCCCCCeEEE
Confidence 99999999 9999999999999999999999999999999999999999999999998 369999999999
Q ss_pred ecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHH
Q psy1586 235 ILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDN 314 (431)
Q Consensus 235 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (431)
|++|++|+++|+|++++|++++++|||+++..+++++ .....+.. ++|. ..+++|..+++++++|.+++|+++.
T Consensus 234 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~-~~~~~~~~--~~~~---~~~~~~~~~~~~~~~g~~~~W~~~~ 307 (505)
T TIGR01314 234 GASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKP-KTDEKGRI--FCYA---LTKEHWVIGGPVNNGGDVLRWARDE 307 (505)
T ss_pred eccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcC-ccCCCCce--EEEE---ecCCcEEEEeeecchHhHHHHHHHH
Confidence 9999999999999999999999999999887766533 22233322 2332 1246899999999999999999987
Q ss_pred cCC----------CCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHH
Q psy1586 315 LNI----------IADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQT 383 (431)
Q Consensus 315 ~~~----------~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~ 383 (431)
+.. ..+|+.+++++.++| ++++++|+|||.|+|+|+||+++||+|+|++.+|+++||+||++||+||.+
T Consensus 308 ~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~ 387 (505)
T TIGR01314 308 IFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNL 387 (505)
T ss_pred hhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 642 135788999988887 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 384 RDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 384 r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
|.+++.+++..|.++++|+++||++||++|+||+|||||+||++++.
T Consensus 388 ~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~ 434 (505)
T TIGR01314 388 YTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPES 434 (505)
T ss_pred HHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCC
Confidence 99999998766778899999999999999999999999999998764
No 8
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.4e-78 Score=617.10 Aligned_cols=401 Identities=18% Similarity=0.244 Sum_probs=348.1
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecc--eecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELE--TLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v 78 (431)
+|+|++||| .+|++++.++.+++ ...+.+|++||||++||+++++++++++++. .+.+|.+|+||+|+++++
T Consensus 12 t~~Ka~l~d-~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~I~~I~is~~~~~~v 85 (470)
T PRK10331 12 TNVRAIAVD-RQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECHIRGITVTTFGVDGA 85 (470)
T ss_pred CceEEEEEc-CCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----CccceEEEEEeccccceE
Confidence 589999999 59999999999976 4467899999999999999999999998753 245799999999999999
Q ss_pred EeeCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChh
Q psy1586 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVD 158 (431)
Q Consensus 79 ~~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~ 158 (431)
++|+ +|+||+|+|+|+|+|+.++++++++..+ .+.++++||+++.+.++++||+||++|+|++|+++ .+|++++
T Consensus 86 ~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~----~~~l~~~ 159 (470)
T PRK10331 86 LVDK-QGNLLYPIISWKCPRTAAVMENIERYIS-AQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQA----HAWLFIS 159 (470)
T ss_pred EECC-CcCCccCceeecCCCcHHHHHHHHHhcC-HHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHh----hhhcCHH
Confidence 9999 7999999999999999999999998765 36789999999999999999999999999999987 4899999
Q ss_pred HHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCcE
Q psy1586 159 SWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPI 232 (431)
Q Consensus 159 d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~pV 232 (431)
|||.|+|||+ +++|+|+||+|++||+++++|++++++.+||++++||+++++++++|+| .+||++|+||
T Consensus 160 dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~~GL~~g~pV 234 (470)
T PRK10331 160 SLINHRLTGE-----FTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAALLGLPVGIPV 234 (470)
T ss_pred HHHHHhhcCc-----cccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHHhCCCCCCeE
Confidence 9999999999 9999999999999999999999999999999999999999999999998 3699999999
Q ss_pred EEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHH
Q psy1586 233 SGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLR 312 (431)
Q Consensus 233 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~ 312 (431)
++|++|++|+++|+|+ .+|++++++|||+++...++.+. ....+......+.. +..++.|..++.... |.+++|++
T Consensus 235 ~~g~~D~~aa~~g~g~-~~g~~~~~~GT~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-g~~~~W~~ 310 (470)
T PRK10331 235 ISAGHDTQFALFGSGA-GQNQPVLSSGTWEILMVRSAQVD-TSLLSQYAGSTCEL-DSQSGLYNPGMQWLA-SGVLEWVR 310 (470)
T ss_pred EEccccHHHHHhCCCC-CCCCEEEecchhhhheeecCCCc-ccccccccccceec-cccCceeeechhhHH-HHHHHHHH
Confidence 9999999999999997 78999999999988766554322 11110000000001 123566766554444 45999999
Q ss_pred HHcCC-CCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHH
Q psy1586 313 DNLNI-IADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAM 390 (431)
Q Consensus 313 ~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l 390 (431)
++++. ...|++|+++++++| ++++++|+|+|.|+| ||+|+|++.+|+++||+||++||+||.+|++++.|
T Consensus 311 ~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l 382 (470)
T PRK10331 311 KLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVL 382 (470)
T ss_pred HHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98853 245889999988876 889999999999877 99999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 391 KEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 391 ~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
++..+.++++|+++||++||++|+||+|||||+||++++.
T Consensus 383 ~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~ 422 (470)
T PRK10331 383 EKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD 422 (470)
T ss_pred HHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc
Confidence 8754567899999999999999999999999999998764
No 9
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=4.5e-78 Score=617.39 Aligned_cols=409 Identities=26% Similarity=0.415 Sum_probs=371.2
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+++|++|+| .+|+++++.+.+++...+.+|+.|||+++||+++++++++++++. +.++.+|.+|++++|++|+|+|
T Consensus 8 t~ik~~l~d-~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~---~~~~~~I~gIgvs~~~~g~v~~ 83 (481)
T TIGR01312 8 SGVKALLVD-EQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQA---SEMGQDIKGIGISGQMHGLVLL 83 (481)
T ss_pred cceEEEEEC-CCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhc---CCCcccEEEEEEecCCceeEEE
Confidence 479999999 599999999999998888999999999999999999999998763 4556789999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+ +|+|+.|+++|+|.|+.++++++.+.++ ...+++.+|+...+.++++||+||++|+|++|+++ .+|++++||
T Consensus 84 d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~----~~~~~~~~y 157 (481)
T TIGR01312 84 DA-NGEVLRPAILWNDTRTAQECEELEAELG-DERVLEITGNLALPGFTAPKLLWVRKHEPEVFARI----AKVMLPKDY 157 (481)
T ss_pred CC-CcCCCccchhhhccchHHHHHHHHHhcC-HhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHh----heeeCchHH
Confidence 98 7999999999999999999999988765 35688999999999999999999999999999987 489999999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCccccccc------CCCCCCCcEEE
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLK------DGPLQGVPISG 234 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~------~gl~~g~pV~~ 234 (431)
|.|+|||+ .++|+|+|++||+||+++++|++++++.+|+++++||+|+++++++|++. +||++|+||++
T Consensus 158 i~~~LtG~-----~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~g~pV~~ 232 (481)
T TIGR01312 158 LRYRLTGE-----YVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAGVPVAA 232 (481)
T ss_pred HhhhhcCC-----eeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhCCCCCCeEEe
Confidence 99999999 99999999999999999999999999999999999999999999999983 69999999999
Q ss_pred ecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHH
Q psy1586 235 ILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDN 314 (431)
Q Consensus 235 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (431)
|++|++|+++|+|++++|++++++|||+++..++.+ +.....+....+++ ..|+.|.++++..++|.+++|+++.
T Consensus 233 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~w~~~~ 307 (481)
T TIGR01312 233 GGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDK-PLPDPAGAVHGFCH----ALPGGWLPMGVTLSATSSLEWFREL 307 (481)
T ss_pred cchHHHHHhhCCCcccCCcEEEEecCceEEEEecCC-cccCcccceeeeee----ecCCceEEEeEehhhHHHHHHHHHH
Confidence 999999999999999999999999999888766543 33333333333333 3578899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy1586 315 LNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKED 393 (431)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~ 393 (431)
++. .+|+++++++++++ ++++++|+|||.|+|.|+||++++|+|+|++.+|+++|++||++||+||.+|++++.|++.
T Consensus 308 ~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l~~~ 386 (481)
T TIGR01312 308 FGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREA 386 (481)
T ss_pred hCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 863 47889999998887 8889999999999999999999999999999999999999999999999999999999875
Q ss_pred cCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 394 CGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 394 ~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.|.++++|+++||++||++|+||+||+||+||++++.
T Consensus 387 ~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~ 423 (481)
T TIGR01312 387 GGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEG 423 (481)
T ss_pred cCCCcceEEEeccccCCHHHHHHHHHHhCCceeecCC
Confidence 4678899999999999999999999999999998764
No 10
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-78 Score=616.71 Aligned_cols=409 Identities=27% Similarity=0.442 Sum_probs=367.5
Q ss_pred CCcEEEEEeCCC-CeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEE
Q psy1586 1 MSKSTIVFAAST-SELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIV 79 (431)
Q Consensus 1 ~s~K~~l~d~~~-g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~ 79 (431)
+|+|+++||. + |++++..+.+++...+.|||.||||++||++++++++++.++. .+++.+|.+|+||+|||++|+
T Consensus 14 t~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~---~~~~~~I~aI~is~~~~g~vl 89 (502)
T COG1070 14 TSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES---KIDPDAIAAIGISGQGHGLVL 89 (502)
T ss_pred CcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc---ccChhhceEEEEeccccceEE
Confidence 5899999995 7 8999999999999989999999999999999999999998863 356789999999999999999
Q ss_pred eeCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhH
Q psy1586 80 WDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDS 159 (431)
Q Consensus 80 ~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d 159 (431)
+|+ +|+||+|+|+|+|.|+.++++++.+.++. +..+..||+++.+.++++||+|+++|+||+|+|+ .+|++++|
T Consensus 90 lD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~----~~il~~~d 163 (502)
T COG1070 90 LDA-NGEPLRPAILWNDTRAAEEVEELEERLGG-EALYARTGLQAMPGFTAPKLLWLKENEPDLFAKA----AKILLIKD 163 (502)
T ss_pred ECC-CCCCccccceecchhhHHHHHHHHhhccc-hhhhhhcCCCcCccccHHHHHHHHhcCcHHHHhh----hheechHH
Confidence 999 79999999999999999999999998875 6677889999999999999999999999999998 48999999
Q ss_pred HHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCC-CCCCccccCCcccccc------cCCCCCCCcE
Q psy1586 160 WLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPS-QILPQIRSSSEIYGCL------KDGPLQGVPI 232 (431)
Q Consensus 160 ~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~-~~lP~i~~~g~~~G~~------~~gl~~g~pV 232 (431)
||.|+|||+ +++|+|+|++|++||+++++|+.++++.+|+++ ++|||++++++++|.| ++||++++||
T Consensus 164 yl~~rLTG~-----~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~pV 238 (502)
T COG1070 164 YLRYRLTGE-----FATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPV 238 (502)
T ss_pred HHHHHHhCC-----cccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHHHHhCCCCCCeE
Confidence 999999999 999999999999999999999999999999995 9999999999999998 4699999999
Q ss_pred EEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHH
Q psy1586 233 SGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLR 312 (431)
Q Consensus 233 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~ 312 (431)
++|+||++++++|+|+.++|++..++||+..+...+.. +.....+....++ +..++.|...+..+++|.+++|++
T Consensus 239 ~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~w~~ 313 (502)
T COG1070 239 VVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDK-PLDDPRGSIYTFC----LGLPGWFIVMGANNTGGWLLEWLR 313 (502)
T ss_pred EECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccc-cccCCccceeeec----ccCCCeEEEEEEecccHHHHHHHH
Confidence 99999999999999999999999999999887766554 3333333332222 235777878889999999999999
Q ss_pred HHcCCCCCHHHHHHHHHhc--C-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHH
Q psy1586 313 DNLNIIADLNEIESLVQKS--S-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEA 389 (431)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~ 389 (431)
+.++...++.++...+... + ++.++.|.|||.|||.|.+++..|+.|.|++..|+++|++||++||++|.++..++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~ 393 (502)
T COG1070 314 ELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEA 393 (502)
T ss_pred HHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987643454444433333 2 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 390 MKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 390 l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
|++..|.++++|+++||++||++|+||+||++|+||++++
T Consensus 394 l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~ 433 (502)
T COG1070 394 LEELGGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPE 433 (502)
T ss_pred HHHhcCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecC
Confidence 9997788999999999999999999999999999999875
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=7.2e-78 Score=620.51 Aligned_cols=410 Identities=21% Similarity=0.265 Sum_probs=359.7
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecce-----ecCC------CCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELET-----LTPK------EGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIG 69 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~ 69 (431)
+|+|++|||..+|++++.++.+|+. .+|. +|++||||++||+++++++++++++. +.++++|++|+
T Consensus 11 ss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~---~~~~~~I~aI~ 87 (536)
T TIGR01234 11 LSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAEL---GVDPADVVGIG 87 (536)
T ss_pred CceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHc---CCCHHHEEEEE
Confidence 5899999993389999999999984 3553 89999999999999999999998764 44567899999
Q ss_pred EecccceEEEeeCCCCccccc-----------cceecCcccHHHHHHHHhhcc-ChhHHHhHhCCCCCccchHHHHHHHH
Q psy1586 70 ITNQRETTIVWDSTTGKPLYN-----------AIVWSDVRTKSIVDTYASKIK-NTTFLTTICGLPISTYFSAVKLNWLM 137 (431)
Q Consensus 70 is~~~~~~v~~d~~~g~pl~~-----------~i~w~D~R~~~~~~~l~~~~~-~~~~~~~~tG~~~~~~~~~~kl~wl~ 137 (431)
+|+|++++|+||+ +|+||++ +|+|+|+|+.++++++++... ..+.++++||+++++.++++||+||+
T Consensus 88 ~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~ 166 (536)
T TIGR01234 88 VDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQIT 166 (536)
T ss_pred EecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHHHHHHH
Confidence 9999999999999 7999983 999999999999999988652 12568899999999999999999999
Q ss_pred hcchHHHHhhhcCcccccChhHHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCC------CCCCCCc
Q psy1586 138 DNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNI------PSQILPQ 211 (431)
Q Consensus 138 ~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi------~~~~lP~ 211 (431)
+|+|++|+++ .+|++++|||.|+|||+ .++|+|+++.++++|...+.|++++++.+|+ ++++||+
T Consensus 167 ~~~pe~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~ 237 (536)
T TIGR01234 167 EEDPAIYQAA----DRWIELADWIVAQLSGD-----IRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTD 237 (536)
T ss_pred hhChHHHHHH----hhhcCHHHHHHHHHhCC-----ccccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCc
Confidence 9999999987 48999999999999999 9999999999998876655569999999985 7889999
Q ss_pred cccCCcccccc------cCCCCCCCcEEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEee
Q psy1586 212 IRSSSEIYGCL------KDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAY 285 (431)
Q Consensus 212 i~~~g~~~G~~------~~gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~ 285 (431)
|+++++++|+| ++||++|+||++|++|++|+++|+|++++|++++++|||+++..+.++ +.. ..+ +++
T Consensus 238 i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~-~~~----~~~ 311 (536)
T TIGR01234 238 IWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGDK-QRA-VPG----MCG 311 (536)
T ss_pred eecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecCc-ccc-CCc----eee
Confidence 99999999998 369999999999999999999999999999999999999887665442 222 122 122
Q ss_pred ec-CCCCCceEEEcccccchhhHHHHHHHHcCCC-----------CCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCC
Q psy1586 286 QF-GARAPITYALEGSIAVAGQTFKWLRDNLNII-----------ADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQ 352 (431)
Q Consensus 286 ~~-~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~ 352 (431)
.. ++..++.|.++++++++|.+++|+++++... ..|+++++++++.| ++++++|+|||.|+|+|+||
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~~d 391 (536)
T TIGR01234 312 VVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPLVD 391 (536)
T ss_pred eccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCCCC
Confidence 11 1245788999999999999999999987421 23788888887776 88999999999999999999
Q ss_pred CCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCC-ccChHHHHHHhhhcCCceEecCC
Q psy1586 353 RDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGM-TANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 353 ~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~-~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
+++||+|+|++.+|++.||+||++||++|.+|++++.|++ .|.++++|+++||+ +||++|+||+||+||+||++++.
T Consensus 392 ~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~ 469 (536)
T TIGR01234 392 QRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS 469 (536)
T ss_pred CcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC
Confidence 9999999999999999999999999999999999999987 58889999999999 99999999999999999988763
No 12
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=9.2e-78 Score=622.16 Aligned_cols=414 Identities=21% Similarity=0.266 Sum_probs=360.8
Q ss_pred CCcEEEEEeCCCCeEEEEEEeeccee------cCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEeccc
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETL------TPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~------~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~ 74 (431)
+|+|++|||..+|+++++++.+|+.. .|.+|++||||++||+++++++++++++. +.++.+|.+||||+|+
T Consensus 13 ts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~I~aIgis~~~ 89 (548)
T PRK04123 13 DSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEA---GVDPAAVVGIGVDFTG 89 (548)
T ss_pred CceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHc---CCChhhEEEEEEeccc
Confidence 58999999932999999999999843 48999999999999999999999998753 4556789999999999
Q ss_pred ceEEEeeCCCCcccc-----------ccceecCcccHHHHHHHHhhccC-hhHHHhHh-CCCCCccchHHHHHHHHhcch
Q psy1586 75 ETTIVWDSTTGKPLY-----------NAIVWSDVRTKSIVDTYASKIKN-TTFLTTIC-GLPISTYFSAVKLNWLMDNVD 141 (431)
Q Consensus 75 ~~~v~~d~~~g~pl~-----------~~i~w~D~R~~~~~~~l~~~~~~-~~~~~~~t-G~~~~~~~~~~kl~wl~~~~p 141 (431)
+++|+||+ +|+||+ |+|+|+|.|+.++++++++..+. .+++++.+ |..+++.++++||+||++|+|
T Consensus 90 ~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P 168 (548)
T PRK04123 90 STPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDP 168 (548)
T ss_pred ceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHHHHhhCH
Confidence 99999999 799998 99999999999999999886531 24567555 999999999999999999999
Q ss_pred HHHHhhhcCcccccChhHHHHHHhcCCCCCcceeeccchhccccccccc-CCCCcHHHHhhcC------CCCCCCCcccc
Q psy1586 142 EVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLR-TLQWEPQLLKFFN------IPSQILPQIRS 214 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~-~~~W~~~~l~~~g------i~~~~lP~i~~ 214 (431)
++|+++ .+|++++|||.|+|||+......++|.++++.+++||.+ ++.|++++++.+| ++.++||+|++
T Consensus 169 ~~~~~~----~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP~l~~ 244 (548)
T PRK04123 169 AVYEAA----ASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKLFTETWT 244 (548)
T ss_pred HHHHHH----hHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhcCCcccc
Confidence 999987 489999999999999942111278999999999999999 5666999999996 88899999999
Q ss_pred CCcccccc------cCCCCCCCcEEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEee-ec
Q psy1586 215 SSEIYGCL------KDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAY-QF 287 (431)
Q Consensus 215 ~g~~~G~~------~~gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~-~~ 287 (431)
+++++|+| .+||++|+||++|+||++|+++|+|+ ++|++++++||++++..+++... ...++ ++ ..
T Consensus 245 ~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~~g~~~~~~GTs~~~~~~~~~~~--~~~~~----~~~~~ 317 (548)
T PRK04123 245 AGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-EPGTLVKVMGTSTCDILLADKQR--AVPGI----CGQVD 317 (548)
T ss_pred CCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-CCCcEEEEecCceEEEEecCCcc--ccCce----eeccc
Confidence 99999998 35999999999999999999999999 99999999999988776654321 11221 11 11
Q ss_pred CCCCCceEEEcccccchhhHHHHHHHHcCC-----------CCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCC
Q psy1586 288 GARAPITYALEGSIAVAGQTFKWLRDNLNI-----------IADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDA 355 (431)
Q Consensus 288 ~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~ 355 (431)
++..|+.|.++++++++|.+++|+++.++. ...|++++++++++| ++++++|+|||.|+|+|+||+++
T Consensus 318 ~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~a 397 (548)
T PRK04123 318 GSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRRTPLADQRL 397 (548)
T ss_pred CcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCCCCCCCCCC
Confidence 234578899999999999999999998741 124788889888886 88999999999999999999999
Q ss_pred ceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCC-ccChHHHHHHhhhcCCceEecCC
Q psy1586 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGM-TANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 356 ~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~-~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
||+|+|++.+|+++||+||++||++|.+|++++.|++ .|.++++|+++||+ +||++|+||+||+||+||++++.
T Consensus 398 rg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~ 472 (548)
T PRK04123 398 KGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVAS 472 (548)
T ss_pred ceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCc
Confidence 9999999999999999999999999999999999987 57888999999999 99999999999999999987753
No 13
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.8e-78 Score=623.22 Aligned_cols=406 Identities=22% Similarity=0.335 Sum_probs=352.4
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| .+|+++++++.+++..++.+|+.||||++||+++++++++++++. +.++.+|.+||||+| +++|+|
T Consensus 10 ts~Ka~l~d-~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~---~~~~~~I~~Igis~~-~s~v~~ 84 (541)
T TIGR01315 10 GSARACIID-STGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAES---KVDPNSVKGIGFDAT-CSLVVL 84 (541)
T ss_pred cCEEEEEEc-CCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHc---CCChhheEEEEeccc-ccceEE
Confidence 589999999 599999999999998889999999999999999999999998753 445678999999999 899999
Q ss_pred eCCCCccc---------cccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCc
Q psy1586 81 DSTTGKPL---------YNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNK 151 (431)
Q Consensus 81 d~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~ 151 (431)
|+ +|+|| +|+|+|+|.|+.++++++++.. ++++++||+++++.++++||+||++|+|++|+++
T Consensus 85 D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~---- 156 (541)
T TIGR01315 85 TH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATN---HNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFAR---- 156 (541)
T ss_pred cC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHH---HHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHh----
Confidence 99 79999 8999999999999999997642 4688999999999999999999999999999987
Q ss_pred ccccChhHHHHHHhcCCCCCcceeeccchhccccccc---ccCCCCcHHHHhhcCCCC---CCC----CccccCCccccc
Q psy1586 152 CLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMN---LRTLQWEPQLLKFFNIPS---QIL----PQIRSSSEIYGC 221 (431)
Q Consensus 152 ~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W~~~~l~~~gi~~---~~l----P~i~~~g~~~G~ 221 (431)
.+|++++|||.|+|||+ .++|.++++.+++|| +++++|++++++.+||+. ++| |+++++++++|+
T Consensus 157 ~~~l~~~dyl~~~LTG~-----~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~ 231 (541)
T TIGR01315 157 CKFFDLTDFLTWRATGK-----EIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGG 231 (541)
T ss_pred hhhcchhhhheeeeecc-----hhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCccccc
Confidence 48999999999999999 999999999989998 699999999999999984 234 999999999998
Q ss_pred -c------cCCCCCCCcEEEecCchHHhHHhccc---CCCC-------cEEEEecccceeccccCCccccCCCCceeEEe
Q psy1586 222 -L------KDGPLQGVPISGILGDQQSALVGQSC---LQAG-------QAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVA 284 (431)
Q Consensus 222 -~------~~gl~~g~pV~~g~~D~~aa~~g~g~---~~~g-------~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~ 284 (431)
| ++||++|+||++|++|++|+++|+|+ +++| ++++++|||+++..+.+. +... .+.+..+
T Consensus 232 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~~-~~~~-~~~~~~~- 308 (541)
T TIGR01315 232 GLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKG-PVFV-PGVWGPY- 308 (541)
T ss_pred ccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecCC-CccC-Cceeecc-
Confidence 7 36999999999999999999999975 6776 889999999877665543 2222 2222111
Q ss_pred eecCCCCCceEEEcccccchhhHHHHHHHHcCCC------------CCHHHHHH----HHHhcC-C-----CCCeEEEeC
Q psy1586 285 YQFGARAPITYALEGSIAVAGQTFKWLRDNLNII------------ADLNEIES----LVQKSS-S-----HTDVVFVPA 342 (431)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~------------~~~~~~~~----~~~~~~-~-----~~~l~~~P~ 342 (431)
+ .+..|++|.++++++++|.+++|+++.+... ..|+.+++ ++.+++ + ++|++|+||
T Consensus 309 ~--~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~ 386 (541)
T TIGR01315 309 R--DALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPD 386 (541)
T ss_pred c--CccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccc
Confidence 0 1235788999999999999999999876310 23544444 344443 3 379999999
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCH---HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhh
Q psy1586 343 FSGLYAPYWQRDARSIICGLTDETSK---VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419 (431)
Q Consensus 343 ~~G~r~p~~~~~~~g~~~gl~~~~~~---~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Ad 419 (431)
|.|+|+|+|||++||+|+||+.+|++ +||+||++||+||.+|++++.|++ .|.++++|+++||++||++|+||+||
T Consensus 387 l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~AD 465 (541)
T TIGR01315 387 LWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIAD 465 (541)
T ss_pred cccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHH
Confidence 99999999999999999999999999 899999999999999999999987 58889999999999999999999999
Q ss_pred hcCCceEecCC
Q psy1586 420 LTGTPVSSSPI 430 (431)
Q Consensus 420 vlg~pv~~~~~ 430 (431)
|||+||++++.
T Consensus 466 vlg~pV~~~~~ 476 (541)
T TIGR01315 466 ACDMPVLIPYV 476 (541)
T ss_pred HHCCeeEecCh
Confidence 99999998864
No 14
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=2.3e-77 Score=615.09 Aligned_cols=407 Identities=21% Similarity=0.314 Sum_probs=356.0
Q ss_pred CCcEEEEEeCCCCeEEEEEEeeccee--cCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETL--TPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v 78 (431)
+|+|++||| .+|++++..+.+|+.. .+.+|++||||++||+++++++++++++. +.++.+|.+|++|+|++++|
T Consensus 13 ts~Ka~l~d-~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~---~~~~~~I~aI~~s~~~~~~v 88 (520)
T PRK10939 13 GSIRAVIFD-LNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKA---GIPASDIAAVSATSMREGIV 88 (520)
T ss_pred CceEEEEEC-CCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHc---CCCccceEEEEEECCcccEE
Confidence 589999999 5999999999988754 45789999999999999999999998653 45567899999999999999
Q ss_pred EeeCCCCccccccceecCcccHHHHHHHHhhccC-hhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccCh
Q psy1586 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKN-TTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTV 157 (431)
Q Consensus 79 ~~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~ 157 (431)
+||+ +|+|+.+ +.|.|+|+.++++++++..+. .+.++++||.++ +.++++||+|+++|+|++|+|+ .+|+++
T Consensus 89 ~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~~----~~~~~~ 161 (520)
T PRK10939 89 LYDR-NGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQA----HTITMI 161 (520)
T ss_pred EECC-CCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHHh----heEech
Confidence 9999 7999965 689999999999999886642 257889999875 6789999999999999999997 489999
Q ss_pred hHHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCc
Q psy1586 158 DSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVP 231 (431)
Q Consensus 158 ~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~p 231 (431)
+|||.|+|||+ +++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|+| .+||++|+|
T Consensus 162 ~dyl~~~LTG~-----~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~p 236 (520)
T PRK10939 162 SDWIAYMLSGE-----LAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAETGLRAGTP 236 (520)
T ss_pred hHhhhheeeCc-----eeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHhhCCCCCCc
Confidence 99999999999 9999999999999999999999999999999999999999999999998 469999999
Q ss_pred EEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHH
Q psy1586 232 ISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWL 311 (431)
Q Consensus 232 V~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~ 311 (431)
|++|++|++|+++|+|++++|++++++|||+++...++.+.. .+.+....++ +..++.|.+++.+.++|.+++||
T Consensus 237 V~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~G~~l~W~ 311 (520)
T PRK10939 237 VVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVT-DPNMNIRINP----HVIPGMVQAESISFFTGLTMRWF 311 (520)
T ss_pred EEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEecccccc-Cccccceece----eeeCCcceEeeeeccceeeeehH
Confidence 999999999999999999999999999999886665554322 2222111111 34588899999999999999999
Q ss_pred HHHcCCC----------CCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCC---CHHHHHHHHHh
Q psy1586 312 RDNLNII----------ADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDET---SKVDIVKAALE 377 (431)
Q Consensus 312 ~~~~~~~----------~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~---~~~~~~rA~~E 377 (431)
+++++.. ..|++++++++++| +++++ +|||.|+|.|.+++.++|+|+|++.+| +++||+||++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvlE 389 (520)
T PRK10939 312 RDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALEE 389 (520)
T ss_pred HhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHHH
Confidence 9987421 24788999988887 77776 599999987555567999999999887 89999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 378 AVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 378 gia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
|+||.+|.+++.+++..|.++++|+++||++||++|+||+|||||+||++++.
T Consensus 390 gia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~ 442 (520)
T PRK10939 390 NAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV 442 (520)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc
Confidence 99999999999998755888999999999999999999999999999998763
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=4.9e-77 Score=604.59 Aligned_cols=401 Identities=21% Similarity=0.288 Sum_probs=345.7
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecc--eecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELE--TLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v 78 (431)
.|+|++||| .+|++++..+.+++ ...+.+|+.||||++||++++++++++.++ ..+.+|++|+||+|++++|
T Consensus 11 ss~K~~l~d-~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~~s~~~~~~v 84 (465)
T TIGR02628 11 TNLRAIAIN-RQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIAVTTFGVDGA 84 (465)
T ss_pred CcEEEEEEc-CCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEEEeccccceE
Confidence 489999999 59999999999876 456789999999999999999999999754 2356799999999999999
Q ss_pred EeeCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChh
Q psy1586 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVD 158 (431)
Q Consensus 79 ~~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~ 158 (431)
++|+ +|+|++|+|+|+|+|+.++++++.+.++ .+.++++||+++.+.++++||+||++|+|++|+++ .+|++++
T Consensus 85 ~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~----~~~l~~~ 158 (465)
T TIGR02628 85 PFDK-QGNQLYPIISWKCPRTAPVMDNIERLLD-AQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERM----HKFVFIS 158 (465)
T ss_pred EECC-CCCCccccccccCcccHHHHHHHHHhhC-HHHHHHHhCCCccccchHHHHHHHHHhChHHHHHH----HHhhCcH
Confidence 9999 7999999999999999999999998765 36789999999999999999999999999999998 4899999
Q ss_pred HHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCcE
Q psy1586 159 SWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPI 232 (431)
Q Consensus 159 d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~pV 232 (431)
|||.|+|||+ .++|+|+||+|+|||+++++|++++++.+||++++|||++++++++|+| ++||++|+||
T Consensus 159 dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~Gl~~g~pV 233 (465)
T TIGR02628 159 SMITHRLTGE-----FTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLGLPVGVPV 233 (465)
T ss_pred HHHHHHHhCC-----cccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHhCCCCCCCE
Confidence 9999999999 9999999999999999999999999999999999999999999999999 3599999999
Q ss_pred EEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHH
Q psy1586 233 SGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLR 312 (431)
Q Consensus 233 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~ 312 (431)
++|++|++|+++|+|+ ++|++++++|||+++...++. +.....+....+.+.. ...++.|...+....+| +++|++
T Consensus 234 ~~g~~D~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~g~-~~~W~~ 309 (465)
T TIGR02628 234 ISAGHDTQFALFGSGA-EQNQPVLSSGTWEILMARSQQ-VDTSLLSQYAGSTCEL-DSQAGLYNPAMQWLASG-VLEWVR 309 (465)
T ss_pred EecCccHHHHHhccCC-CCCcEEEeccchhhheeccCc-CCCCcccccccccccc-ccCCceeeehhhhhhhh-HHHHHH
Confidence 9999999999999997 889999999999877655443 2222222221111111 12366776655445445 899999
Q ss_pred HHcCCC----CC-HHHHHHHHHhcC-CCCCeE-EEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHH
Q psy1586 313 DNLNII----AD-LNEIESLVQKSS-SHTDVV-FVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRD 385 (431)
Q Consensus 313 ~~~~~~----~~-~~~~~~~~~~~~-~~~~l~-~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~ 385 (431)
+.+... .+ |++|++.+++++ ++++++ |+|++ ++++||+|+|++.+|+++||+||++||+||.+|+
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~--------~~~a~g~~~Gl~~~~~~~~l~rAvlEgia~~~r~ 381 (465)
T TIGR02628 310 KLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDL--------LSCGQGGIQGLTLNTTRGHIYRAALEGLTAQLKR 381 (465)
T ss_pred HHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccC--------CcccceeEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 977421 12 688899888876 888888 88875 3578999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 386 ILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 386 ~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
+++.|++..+.++++|+++||++||++|+||+||+||+||++++.
T Consensus 382 ~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~ 426 (465)
T TIGR02628 382 NLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD 426 (465)
T ss_pred HHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC
Confidence 999998743567899999999999999999999999999998764
No 16
>PLN02669 xylulokinase
Probab=100.00 E-value=3.2e-75 Score=598.97 Aligned_cols=407 Identities=16% Similarity=0.190 Sum_probs=357.7
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceec---CCCCceeeCHH----------HHHHHHHHHHHHHHHhhhhcCCCCCCeeE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLT---PKEGWVEQDPM----------VILHLVEECIEKCVGYLVDLDINPNDIVA 67 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~---~~~g~~e~d~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~I~~ 67 (431)
||+|++||| ++|+++++++++|+... +.+|++||||+ .||++++.+++++.+ ++++.++|++
T Consensus 18 ~s~Ka~l~d-~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~----~~~~~~~I~a 92 (556)
T PLN02669 18 QSLKATVLD-SNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK----EKFPFHKVVA 92 (556)
T ss_pred CCeEEEEEc-CCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH----cCCChhhEEE
Confidence 689999999 69999999999998543 45668999998 788999999999763 3556788999
Q ss_pred EEEecccceEEEeeCCCCccc-------------------cccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccc
Q psy1586 68 IGITNQRETTIVWDSTTGKPL-------------------YNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYF 128 (431)
Q Consensus 68 I~is~~~~~~v~~d~~~g~pl-------------------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~ 128 (431)
|++|+|+|++|+||+.+|+|| +|+++|+|+|+.++++++.+..++.++++++||+++++.|
T Consensus 93 Is~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG~~~~~~~ 172 (556)
T PLN02669 93 ISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTGSRAYERF 172 (556)
T ss_pred EEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHCCcccccc
Confidence 999999999999988447776 6999999999999999999887654678999999999999
Q ss_pred hHHHHHHHHhcchHHHHhhhcCcccccChhHHHHHHhcCCCCCcce-eeccchhcccccccccCCCCcHHHHhhcCCC-C
Q psy1586 129 SAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLH-ITDVTNASRTLLMNLRTLQWEPQLLKFFNIP-S 206 (431)
Q Consensus 129 ~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~-~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~-~ 206 (431)
+.+||+|+++|+||+|+++ .+|+.++|||.|+|||+ . .+|+|+||+++|||+++++|++++|+.+++. .
T Consensus 173 t~~ki~wl~~~~Pe~y~~t----~~i~~~~dyl~~~LtG~-----~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~ 243 (556)
T PLN02669 173 TGPQIRKIYETQPEVYHDT----ERISLVSSFMASLLVGD-----YASIDETDGAGMNLMDIEKRCWSKAALEATAPGLE 243 (556)
T ss_pred cHHHHHHHHHhChHHHHHH----HhhccHHHHHHHhhcCC-----CccccchhhhhhhhhccccCCcCHHHHHhhCccHH
Confidence 9999999999999999998 48999999999999998 5 5999999999999999999999999999544 3
Q ss_pred CCCCccccCCcccccc------cCCCCCCCcEEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCce
Q psy1586 207 QILPQIRSSSEIYGCL------KDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLL 280 (431)
Q Consensus 207 ~~lP~i~~~g~~~G~~------~~gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~ 280 (431)
++||+++++++++|+| ++||++|+||++|++|++|+++|+|++++|++.+++|||+++..+++... ....+.+
T Consensus 244 ~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~-~~~~~~~ 322 (556)
T PLN02669 244 EKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQ-PSLEGHV 322 (556)
T ss_pred HHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCC-CCCCcce
Confidence 7899999999999999 46999999999999999999999999999999999999988777665432 2333322
Q ss_pred eEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCC----CCCCC
Q psy1586 281 TTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPY----WQRDA 355 (431)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~----~~~~~ 355 (431)
+++ +..|+.|+.+++..+||.+++|+++.++ ..+|+.+++++++.| ++++++++||..||+.|+ +++.+
T Consensus 323 --~~~---~~~~~~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~ 396 (556)
T PLN02669 323 --FPN---PVDPESYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVGFHRYI 396 (556)
T ss_pred --eeC---ccCCCCeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCccchhh
Confidence 222 2338899999999999999999999885 347899999988776 888999889999999996 56678
Q ss_pred ceeEecCCCC---------CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 356 RSIICGLTDE---------TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 356 ~g~~~gl~~~---------~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
+|.|.|++.. |++.|++||++||++|.+|.+++.|+ .+.++++|+++||++||++|+||+|||||+||+
T Consensus 397 ~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~ 474 (556)
T PLN02669 397 LENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVPPKRIIATGGASANQSILKLIASIFGCDVY 474 (556)
T ss_pred hccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeE
Confidence 8999999887 79999999999999999999999995 356789999999999999999999999999999
Q ss_pred ecCC
Q psy1586 427 SSPI 430 (431)
Q Consensus 427 ~~~~ 430 (431)
+++.
T Consensus 475 ~~~~ 478 (556)
T PLN02669 475 TVQR 478 (556)
T ss_pred ecCC
Confidence 8864
No 17
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1e-71 Score=564.41 Aligned_cols=396 Identities=18% Similarity=0.251 Sum_probs=331.6
Q ss_pred CCcEEEEEeCCC---CeEE-EEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccce
Q psy1586 1 MSKSTIVFAAST---SELL-TYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRET 76 (431)
Q Consensus 1 ~s~K~~l~d~~~---g~~l-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~ 76 (431)
+|+|++|+|. + |+++ .....+++...+.+++.||||+.||+++.++++++.+. ..+|.+|+||+|+++
T Consensus 8 t~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Igis~q~~~ 79 (454)
T TIGR02627 8 SSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIGIDTWGVD 79 (454)
T ss_pred CchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEEEecccee
Confidence 5899999995 6 5776 67777777777899999999999999999999998642 246999999999999
Q ss_pred EEEeeCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccC
Q psy1586 77 TIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGT 156 (431)
Q Consensus 77 ~v~~d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~ 156 (431)
+|++|+ +|+||+|+|+|+|+|+.++++++.+..+ .+.+|++||+++.+.++++||+||++|+|++|++++ +|+.
T Consensus 80 ~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~----~~l~ 153 (454)
T TIGR02627 80 FVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELG-KEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVA----HFLL 153 (454)
T ss_pred EEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcC-HHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHH----HhCC
Confidence 999999 7999999999999999999999988765 478999999999999999999999999999999984 8999
Q ss_pred hhHHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCccccccc-CCCCCCCcEEE-
Q psy1586 157 VDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLK-DGPLQGVPISG- 234 (431)
Q Consensus 157 ~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~-~gl~~g~pV~~- 234 (431)
++|||.|+|||+ .++|+|+||+|++||+++++|++++++.+||++++||||+++++++|.+. .|+ +|+||++
T Consensus 154 ~~dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~gl-~g~pVv~~ 227 (454)
T TIGR02627 154 IPDYLNYRLTGK-----KVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQG-NQIPVVAV 227 (454)
T ss_pred HHHHHHHheeCC-----ceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeecccC-CCCCEEEE
Confidence 999999999999 99999999999999999999999999999999999999999999999984 466 8999998
Q ss_pred ecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHH
Q psy1586 235 ILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDN 314 (431)
Q Consensus 235 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (431)
|+||++|+++|+|+.++|++.+++|||+++...++. +...+.+....+.+ ....++.|.+.+... ++ |+++.
T Consensus 228 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~----W~~~~ 299 (454)
T TIGR02627 228 ATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQT-PITNEQALAANITN--EGGADGRYRVLKNIM-GL----WLLQR 299 (454)
T ss_pred CCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCC-CCCCHHHHHhcccc--ccccccEEEeecchh-hh----HHHHH
Confidence 889999999999999999999999999887655442 22222211111111 112466676665443 44 55554
Q ss_pred cCC---CCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCC-Ccee------EecCCCCCCHHHHHHHHHhhhhHHHH
Q psy1586 315 LNI---IADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRD-ARSI------ICGLTDETSKVDIVKAALEAVCFQTR 384 (431)
Q Consensus 315 ~~~---~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~-~~g~------~~gl~~~~~~~~~~rA~~Egia~~~r 384 (431)
+.. ..+|+++.+.+..+|. +.|++.+++.|+|+|. +++. |+|++.+|+++||+||++||+||.+|
T Consensus 300 ~~~~~~~~~~~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~r 374 (454)
T TIGR02627 300 VCRERDINDLPALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYR 374 (454)
T ss_pred HHhhhccccHHHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 421 2356677766655542 3366678899999995 5444 49999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 385 DILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 385 ~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
++++.|++..+.++++|+++||++||++|+||+||+||+||++.+
T Consensus 375 ~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~ 419 (454)
T TIGR02627 375 QVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAGP 419 (454)
T ss_pred HHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcCC
Confidence 999999875477889999999999999999999999999998654
No 18
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=7e-70 Score=551.45 Aligned_cols=392 Identities=18% Similarity=0.238 Sum_probs=326.6
Q ss_pred EEEeCCCC-eEEEEEEeecce-ecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEeeCC
Q psy1586 6 IVFAASTS-ELLTYHKVELET-LTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDST 83 (431)
Q Consensus 6 ~l~d~~~g-~~l~~~~~~~~~-~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d~~ 83 (431)
.-||. +| ++..++..+++. ..+.+++.+|||+.||+++.++++++... ..+|.+|+||+|++++|+||+
T Consensus 3 ~~~~~-~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~I~~Igis~q~~~~v~lD~- 73 (471)
T PRK10640 3 ARYER-ECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIRIDSIGIDTWGVDYVLLDK- 73 (471)
T ss_pred eEEcC-CCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCCccEEEEcCCcccEEEECC-
Confidence 34662 33 444444444432 24688999999999999999999887542 367999999999999999999
Q ss_pred CCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHHHHH
Q psy1586 84 TGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIW 163 (431)
Q Consensus 84 ~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~ 163 (431)
+|+||+|+|+|+|.|+.++++++.+.++ .+++|++||+++.+.++++||+|+++|+|++|+++ .+|+.++|||.|
T Consensus 74 ~G~pL~pai~w~D~Ra~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~----~~~l~~~dyl~~ 148 (471)
T PRK10640 74 QGQRVGLPVSYRDSRTDGVMAQAQQQLG-KRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQV----AHALLIPDYFSY 148 (471)
T ss_pred CCCCcCCceeccCCCCHHHHHHHHHhcC-HHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHh----hHeecHHHHHHH
Confidence 7999999999999999999999998775 46789999999999999999999999999999987 489999999999
Q ss_pred HhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccccCCCCCCCcEEE-ecCchHHh
Q psy1586 164 NLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQGVPISG-ILGDQQSA 242 (431)
Q Consensus 164 ~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~gl~~g~pV~~-g~~D~~aa 242 (431)
+|||+ .++|+|+||+|+|||+++++|++++++.+||+.++||+++++++++|.+...+.+|+||++ |+||++|+
T Consensus 149 ~LTG~-----~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~~g~g~pVv~~g~~D~~aa 223 (471)
T PRK10640 149 RLTGK-----MNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASA 223 (471)
T ss_pred HHhCC-----cceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecccCCCCCEEEeCCCcHHHH
Confidence 99999 9999999999999999999999999999999999999999999999998443337899998 68999999
Q ss_pred HHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCC---CC
Q psy1586 243 LVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNI---IA 319 (431)
Q Consensus 243 ~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~---~~ 319 (431)
++|+|++++|++++++|||+++...++. +..+..+....+.+ .+ ..++.|.++..+. | +|+++.+.. ..
T Consensus 224 ~~g~g~~~~g~~~~s~GT~~~~~~~~~~-p~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~--g---~W~~~~~~~~~~~~ 295 (471)
T PRK10640 224 VIASPLNDSDAAYLSSGTWSLMGFESQT-PFTNDTALAANITN-EG-GAEGRYRVLKNIM--G---LWLLQRVLQERQIT 295 (471)
T ss_pred hhccCCCCCCeEEEEeccHhhhheecCC-CcCCHHHHHhccCc-cC-CCCceEEEecchh--H---HHHHHHHHHHhccC
Confidence 9999999999999999999887666553 32222221111111 11 3466776665332 3 899997631 23
Q ss_pred CHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCC-CCceeEecCCCCC------CHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy1586 320 DLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQR-DARSIICGLTDET------SKVDIVKAALEAVCFQTRDILEAMKE 392 (431)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~-~~~g~~~gl~~~~------~~~~~~rA~~Egia~~~r~~~~~l~~ 392 (431)
+|+++.+++.++|++++++ +| .|+|. ||| ++||+|+|++..| +++||+||++||+||.+|.+++.|++
T Consensus 296 ~~~~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~ 370 (471)
T PRK10640 296 DLPALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELAQ 370 (471)
T ss_pred CHHHHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888886 58 68884 675 8999997776655 99999999999999999999999987
Q ss_pred hcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 393 DCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 393 ~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
..+.++++|+++||++||++|+||+||++|+||++.+
T Consensus 371 ~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~ 407 (471)
T PRK10640 371 LRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGP 407 (471)
T ss_pred HhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCC
Confidence 5577789999999999999999999999999998764
No 19
>KOG2517|consensus
Probab=100.00 E-value=7.2e-68 Score=518.48 Aligned_cols=427 Identities=47% Similarity=0.713 Sum_probs=379.2
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.|+|++|||..+|+++..+..++....+++||+||||.++|.++++|++.+.+.+...+.....|.+|+++.|+++.|+|
T Consensus 16 tSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~igv~~qr~~~v~w 95 (516)
T KOG2517|consen 16 TSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIGVVNQREGSVLW 95 (516)
T ss_pred CceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEEEEecCCceEEe
Confidence 48999999987999999999999999999999999999999999999999998877656666678999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccC-hhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKN-TTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDS 159 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d 159 (431)
++.+|+|++++|.|+|+|+..++++++...+. .......+|.++++.|.++||+||++|.|++.....+ .....++
T Consensus 96 ~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~---~~~~~~~ 172 (516)
T KOG2517|consen 96 NKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEE---GGFDLGT 172 (516)
T ss_pred ecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHHHHHHHh---cccchhh
Confidence 99899999999999999999999999987653 1223367999999999999999999999998433332 4445566
Q ss_pred HHHHHhcCCCCCcc-eeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccccCC---CCCCCcEEEe
Q psy1586 160 WLIWNLTGGVDGGL-HITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDG---PLQGVPISGI 235 (431)
Q Consensus 160 ~l~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~g---l~~g~pV~~g 235 (431)
|+.|++++-+.+.. .++|.++|+++++||..+..|+..+++.+|++.+++|++..+++++|.+..+ +.+|+||.++
T Consensus 173 ~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~~~~~~~g~~vs~~ 252 (516)
T KOG2517|consen 173 FDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAGDLGLLEGTPVSSC 252 (516)
T ss_pred hhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccccccccccCcceeec
Confidence 66666655433334 5899999999999999999999999999999999999999999999999554 9999999999
Q ss_pred cCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHc
Q psy1586 236 LGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNL 315 (431)
Q Consensus 236 ~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~ 315 (431)
.+|++|+++|..+.++|+...+.||++++..+++..+....+|+++...++.|.-.+-.|.+++....+|.+++|+++.+
T Consensus 253 lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~ 332 (516)
T KOG2517|consen 253 LGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNL 332 (516)
T ss_pred hhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998777777899888887776333335899999999999999999998
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Q psy1586 316 NIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCG 395 (431)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g 395 (431)
+..++..++++++..+..+.+++|.|.|.|.|+|+|||++||+|.|++.+++.+|+.||++|+|+|.+|.+|+.|++..+
T Consensus 333 ~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~ 412 (516)
T KOG2517|consen 333 GIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGG 412 (516)
T ss_pred hHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76556667777777777889999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 396 VALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 396 ~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.++++++++||.+||++++|+.||++|+||++++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~ 447 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQD 447 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccc
Confidence 79999999999999999999999999999999864
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=8.2e-66 Score=499.21 Aligned_cols=405 Identities=25% Similarity=0.334 Sum_probs=352.6
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
|.|+.|||..+|++|+.+..||+...+.++..||++.++|+++++++++++++ +|+++.+|++|||+++ .++|++|
T Consensus 14 SaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gIGvDaT-cSlvv~d 89 (544)
T COG1069 14 SARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGIGVDAT-CSLVVID 89 (544)
T ss_pred ceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEEcce-eeeEEEC
Confidence 78999999866999999999999999999999999999999999999999876 5899999999999999 6999999
Q ss_pred CCCCcccc---------ccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcc
Q psy1586 82 STTGKPLY---------NAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKC 152 (431)
Q Consensus 82 ~~~g~pl~---------~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~ 152 (431)
+ +|+|+. ++|+|+|+|+.++++++++.- ..++...|..+++.+..|||+|+++|.|++|++. .
T Consensus 90 ~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~---~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a----~ 161 (544)
T COG1069 90 R-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATC---HPVLDYYGGKISPEMMIPKLMWLKREAPAVWERA----A 161 (544)
T ss_pred C-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhc---hHHHHhhCCccChhhhHHHHHHHHhhChHHHHHh----h
Confidence 9 699873 489999999999999999863 4588899999999999999999999999999987 4
Q ss_pred cccChhHHHHHHhcCCCCCcceeeccchhcccccccc-cCCCCcHHHHhhcCCCC-----CCCC-ccccCCcccccc---
Q psy1586 153 LFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNL-RTLQWEPQLLKFFNIPS-----QILP-QIRSSSEIYGCL--- 222 (431)
Q Consensus 153 ~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~~~~l~~~gi~~-----~~lP-~i~~~g~~~G~~--- 222 (431)
+|+.+.|||.|+|||+ ..-+.+++..-..|.. +.+.|++++|+.+|++. .+|| .+++.|+.+|.+
T Consensus 162 ~~fdl~D~l~~~ltG~-----~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e 236 (544)
T COG1069 162 HIFDLADWLTWKLTGS-----IARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPE 236 (544)
T ss_pred hhhhHHHHHHHHhhcc-----hhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCccccccCHH
Confidence 8999999999999998 6666666655566777 55669999999999872 4466 689999999998
Q ss_pred ---cCCCCCCCcEEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcc
Q psy1586 223 ---KDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299 (431)
Q Consensus 223 ---~~gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (431)
+.||++|+.|.+|..|..|+.+|+++.+++.+..++|||++.+..+... ...+|++.++. +..+||+|.+||
T Consensus 237 ~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~--~~v~GvwGpy~---~ai~Pg~~~~Eg 311 (544)
T COG1069 237 AAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKP--RFVPGVWGPYD---GAVLPGLWLYEG 311 (544)
T ss_pred HHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCc--eecCccccccc---cccCcchhhhcc
Confidence 5699999999999999999999999889999999999997766554432 34467776432 346799999999
Q ss_pred cccchhhHHHHHHHHcCC--------CCCH-----------HHHHHHHHhc-CCCCCeEEEeCCCCCCCCCCCCCCceeE
Q psy1586 300 SIAVAGQTFKWLRDNLNI--------IADL-----------NEIESLVQKS-SSHTDVVFVPAFSGLYAPYWQRDARSII 359 (431)
Q Consensus 300 ~~~~~G~~~~w~~~~~~~--------~~~~-----------~~~~~~~~~~-~~~~~l~~~P~~~G~r~p~~~~~~~g~~ 359 (431)
+++.+|.+++||.+..+. ..+. +.|.+.+.+. |..++++++|+|+|+|+|+.||+++|+|
T Consensus 312 GQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i 391 (544)
T COG1069 312 GQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVI 391 (544)
T ss_pred cchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCCccceeEE
Confidence 999999999999987521 1111 1233333333 4889999999999999999999999999
Q ss_pred ecCCCCCCHH---HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 360 CGLTDETSKV---DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 360 ~gl~~~~~~~---~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
.|++++|+++ .+|+|.+|+++|..|+++|.+++ .|+++++|+++||..||++|||+.||++|+||+++.
T Consensus 392 ~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~ 463 (544)
T COG1069 392 TGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIPA 463 (544)
T ss_pred eccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEeec
Confidence 9999999999 89999999999999999999998 699999999999999999999999999999999875
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=2.6e-50 Score=376.18 Aligned_cols=230 Identities=33% Similarity=0.545 Sum_probs=210.4
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
+|+|++||| ++|++++..+.+++...+.+|+.||||++||++++++++++.+++ ++++.+|++|+||+|++++|++
T Consensus 10 ts~K~~l~d-~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~---~~~~~~I~aI~is~~~~~~v~~ 85 (245)
T PF00370_consen 10 TSVKAVLFD-EDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA---GIDPEQIKAIGISGQGHGLVLL 85 (245)
T ss_dssp SEEEEEEEE-TTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC---TSCGGGEEEEEEEE-SSEEEEE
T ss_pred cceEEEEEe-CCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc---CcccceeEEEEeccccCCccee
Confidence 589999999 699999999999999988899999999999999999999998874 4567899999999999999999
Q ss_pred eCCCCccccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccchHHHHHHHHhcchHHHHhhhcCcccccChhHH
Q psy1586 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSW 160 (431)
Q Consensus 81 d~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~ 160 (431)
|+ +|+|++|+|+|+|+|+.++++++.+... .+++++.||.++++.++++|++||++|+|++|++++ +|++++||
T Consensus 86 D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~----~~~~~~dy 159 (245)
T PF00370_consen 86 DK-DGKPLRPAILWMDTRAAEEAEELNEEGS-PEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA----KFLTLSDY 159 (245)
T ss_dssp ET-TSSBSSCEE-TT-CTTHHHHHHHHHHTH-HHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH----EEEEHHHH
T ss_pred cc-ccccccccccccccchhhHHHHHHhhcC-cceeeeeccccccccchHHHHHHHHHhCchhhhhhh----hcccHHHH
Confidence 99 7999999999999999999999988554 478999999999999999999999999999999984 89999999
Q ss_pred HHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCCCCCCCccccCCcccccc------cCCCCCCCcEEE
Q psy1586 161 LIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPISG 234 (431)
Q Consensus 161 l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~~~~lP~i~~~g~~~G~~------~~gl~~g~pV~~ 234 (431)
|.|+|||+ .++|+|+|++|++||+++++|++++++.+|++.++||+|+++|+++|++ ++||++|+||++
T Consensus 160 l~~~LtG~-----~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~ 234 (245)
T PF00370_consen 160 LAYKLTGR-----AATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKELGLPEGTPVIA 234 (245)
T ss_dssp HHHHHHSC------EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHHTSTTTEEEEE
T ss_pred HHhhcccc-----ccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHhCCCCCCEEEE
Confidence 99999999 9999999999999999999999999999999999999999999999999 359999999999
Q ss_pred ecCchHHhHHh
Q psy1586 235 ILGDQQSALVG 245 (431)
Q Consensus 235 g~~D~~aa~~g 245 (431)
|++|++|+++|
T Consensus 235 g~~D~~aa~lG 245 (245)
T PF00370_consen 235 GGGDQAAAALG 245 (245)
T ss_dssp EEEHHHHHHHH
T ss_pred EchHHHHhhcC
Confidence 99999999987
No 22
>KOG2531|consensus
Probab=100.00 E-value=1.8e-45 Score=346.98 Aligned_cols=405 Identities=17% Similarity=0.228 Sum_probs=327.5
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCC---------C--CceeeCHH-HHHHHHHHHHHHHHHhhhhcCCCCCCeeEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPK---------E--GWVEQDPM-VILHLVEECIEKCVGYLVDLDINPNDIVAI 68 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~---------~--g~~e~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I 68 (431)
|.+|++++| ++.+|++++.+.+....|+ . |..-.+|- +|.+|+.-.+.++ .++|.+..+|.||
T Consensus 19 QqlKaviid-s~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl----~~~~~d~~kV~ai 93 (545)
T KOG2531|consen 19 QQLKAVIID-SNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKL----REAGFDLSKVMAI 93 (545)
T ss_pred ceeEEEEEc-CCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHH----HHcCCCHHHhhhh
Confidence 678999999 6999999999998765432 1 23334555 8888887766664 4457888999999
Q ss_pred EEecccceEEEeeCCCCcc--------------------ccccceecCcccHHHHHHHHhhccChhHHHhHhCCCCCccc
Q psy1586 69 GITNQRETTIVWDSTTGKP--------------------LYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYF 128 (431)
Q Consensus 69 ~is~~~~~~v~~d~~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~ 128 (431)
+-++|+||.|+|.+ .++- +.....|+|+.+..+++++...+++.+++.+.||.+.+..|
T Consensus 94 SGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSRAy~RF 172 (545)
T KOG2531|consen 94 SGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSRAYERF 172 (545)
T ss_pred cccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcchhhhhc
Confidence 99999999999987 3421 34567999999999999999999988999999999999999
Q ss_pred hHHHHHHHHhcchHHHHhhhcCcccccChhHHHHHHhcCCCCCcceeeccchhcccccccccCCCCcHHHHhhcCCC-CC
Q psy1586 129 SAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIP-SQ 207 (431)
Q Consensus 129 ~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~~gi~-~~ 207 (431)
+.++|+.+.+.+||.|+++. ++..+++|++..|-|. ...+|+|++|+++|+|+++++|+.++|+++.-+ .+
T Consensus 173 TGpQIrKi~~~~pe~Ye~Te----rISLVSsFlaSlllG~----~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~ 244 (545)
T KOG2531|consen 173 TGPQIRKIYQQEPEAYEKTE----RISLVSSFLASLLLGS----YAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEE 244 (545)
T ss_pred ccHHHHHHHHhChHhhhccc----eeehHHHHHHHHHhcc----ccceecccccCchHHHHhhhhhhHHHHhhhChhHHH
Confidence 99999999999999999874 7888999999999998 477999999999999999999999999998644 46
Q ss_pred CCCccccCCcccccc------cCCCCCCCcEEEecCchHHhHHhcccCCCCcEEEEecccceeccccCCccccCCCCcee
Q psy1586 208 ILPQIRSSSEIYGCL------KDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLT 281 (431)
Q Consensus 208 ~lP~i~~~g~~~G~~------~~gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~ 281 (431)
+|..++++..+.|+| +.|+++++.|++-.||+++++.|.. ++++++.+|+|||..+++.+.+.. ..+.|-
T Consensus 245 KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~-l~~~dl~iSLGTSdTv~m~t~~~~-p~~egH-- 320 (545)
T KOG2531|consen 245 KLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLP-LRPGDLLISLGTSDTVFMVTKEYH-PSPEGH-- 320 (545)
T ss_pred HhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCcc-ccCCceEEEecCcceEEEEcCCCC-CCCCcc--
Confidence 788999999999999 6799999999999999999999987 578999999999988888776443 233332
Q ss_pred EEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCC-CCceeE
Q psy1586 282 TVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQR-DARSII 359 (431)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~-~~~g~~ 359 (431)
.+++ +..++.|+.+-|..||+.+-+-+++... ..+|+.+++.++..| ++++-+-+=|-.+|..|.--+ ..|=.+
T Consensus 321 vf~h---P~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~ 396 (545)
T KOG2531|consen 321 VFCH---PTDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGTLRFIF 396 (545)
T ss_pred eecc---CCCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccceEEEe
Confidence 2332 3458899999999999999999998653 469999999888877 666543221223455552100 001001
Q ss_pred e---------cCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 360 C---------GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGV-ALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 360 ~---------gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~-~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
. ++-...+|+..+||++||-++..|..++.|.- +. ++.+|+++||.++|..++|++|||||.||...+
T Consensus 397 ~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~ 474 (545)
T KOG2531|consen 397 ENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGF--KSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIE 474 (545)
T ss_pred cCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccC--CCCCCceEEEecCccccHHHHHHHHHHhCCCeEeec
Confidence 1 22233468999999999999999999999853 33 789999999999999999999999999998764
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.97 E-value=6.1e-30 Score=231.11 Aligned_cols=173 Identities=32% Similarity=0.595 Sum_probs=144.5
Q ss_pred EEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCC---CCC----HHHHHH
Q psy1586 254 AKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNI---IAD----LNEIES 326 (431)
Q Consensus 254 ~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~---~~~----~~~~~~ 326 (431)
+++++|||+++.+.+. ++..+.++.+..+.. +..+++|.++++.+++|.+++|++++++. ..+ ++.+..
T Consensus 1 a~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSS-EPVISPPGFWNPFAD---HVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAE 76 (198)
T ss_dssp EEEEESSSEEEEEEET-STTTTSSSSEEEEEE---ETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHH
T ss_pred CEEEehhhhHHhhEeC-ccccCCCeeEEeecC---cCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHH
Confidence 4789999999888654 455556677765531 23578899999999999999999999743 111 122321
Q ss_pred --HHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEE
Q psy1586 327 --LVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVD 404 (431)
Q Consensus 327 --~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~ 404 (431)
.....+++.+++|+|++.|+|+|+||++++|+|.|++.+|++.|++||++||++|.+|++++.|++..+.++++|+++
T Consensus 77 ~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~ 156 (198)
T PF02782_consen 77 LEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVS 156 (198)
T ss_dssp HHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEE
T ss_pred HHhhhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEec
Confidence 122334788999999999999999999999999999999999999999999999999999999998668999999999
Q ss_pred cCCccChHHHHHHhhhcCCceEecCC
Q psy1586 405 GGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 405 GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
||++||++|+|++||+||+||++++.
T Consensus 157 GG~~~n~~~~q~~Advl~~~V~~~~~ 182 (198)
T PF02782_consen 157 GGGAKNPLWMQILADVLGRPVVRPEV 182 (198)
T ss_dssp SGGGGSHHHHHHHHHHHTSEEEEESS
T ss_pred cccccChHHHHHHHHHhCCceEeCCC
Confidence 99999999999999999999999864
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.18 E-value=7.3e-06 Score=76.51 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhH
Q psy1586 302 AVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCF 381 (431)
Q Consensus 302 ~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~ 381 (431)
..+|..++-+.+.++. +++++++++.+... |.-.+.|+..+ .....+..+....+++++++++++++++
T Consensus 124 ~Gtg~f~e~~a~~l~~--~~~e~~~~~~~~~~-------~~~~~~~c~vf--~~s~vi~~l~~g~~~~di~~~~~~~va~ 192 (248)
T TIGR00241 124 AGTGRFLEVTARRLGV--SVEELGSLAEKADR-------KAKISSMCTVF--AESELISLLAAGVKKEDILAGVYESIAE 192 (248)
T ss_pred ccccHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCEeEEE--echhHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3457888989888886 88888887655321 11011111111 0122333455667899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCc-eEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 382 QTRDILEAMKEDCGVALE-KLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 382 ~~r~~~~~l~~~~g~~~~-~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.++..+..+ +++ +|+++||.++|+.|+|.+++.+++||.+++.
T Consensus 193 ~i~~~~~~~------~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~ 236 (248)
T TIGR00241 193 RVAEMLQRL------KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPE 236 (248)
T ss_pred HHHHHHhhc------CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCC
Confidence 998765433 344 7999999999999999999999999998875
No 25
>PRK13317 pantothenate kinase; Provisional
Probab=97.46 E-value=0.0037 Score=59.05 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEec-----CCCCCCHHHHHH
Q psy1586 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICG-----LTDETSKVDIVK 373 (431)
Q Consensus 300 ~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~g-----l~~~~~~~~~~r 373 (431)
++..||..+.=+...+....+++++.+++.+-. ..-++. +-.+.|...+....+.+.+.+| +....+++|+++
T Consensus 122 Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~-v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaa 200 (277)
T PRK13317 122 GTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLK-VGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILA 200 (277)
T ss_pred cccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccce-eccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHH
Confidence 344556566556555532368999999987643 222222 2334443222234455655555 344678999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCceEEEEc-CCccChHHHHHHhhhc---CCceEecCC
Q psy1586 374 AALEAVCFQTRDILEAMKEDCGVALEKLLVDG-GMTANKYLMQLQADLT---GTPVSSSPI 430 (431)
Q Consensus 374 A~~Egia~~~r~~~~~l~~~~g~~~~~i~~~G-G~~~s~~~~qi~Advl---g~pv~~~~~ 430 (431)
+++..++..+-...-.+.+. ...++|+++| |.++|+.+++.+++.+ +.++..++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~--~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~ 259 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAARE--KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLEN 259 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCC
Confidence 99988887776654444443 3457899999 6899999999999998 688877763
No 26
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.13 E-value=0.00073 Score=63.05 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.|+|++++| +|++++..+. ||+.||+++.+++++++++. +.++.+|.+|++|+|++++|+.
T Consensus 10 ts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~~---~~~~~~i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 10 TTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAILEALKEA---GIGLEPIDKIVATGYGRHKVGF 70 (248)
T ss_pred hheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHHc---CCChhheeEEEEECCCcccccc
Confidence 478999999 5899887755 55568899999998887653 5566789999999999998873
No 27
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.99 E-value=0.03 Score=52.73 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=77.9
Q ss_pred ccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCC--CCCCCCCCceeEec-C-----CCCCCHH
Q psy1586 299 GSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLY--APYWQRDARSIICG-L-----TDETSKV 369 (431)
Q Consensus 299 ~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r--~p~~~~~~~g~~~g-l-----~~~~~~~ 369 (431)
+++..||.++-=+...+....+++++.+++++-. ..-++ .+-.+.|.. .+....+..++-+| + ....+++
T Consensus 126 ~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl-~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~e 204 (279)
T TIGR00555 126 GGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDL-LVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPE 204 (279)
T ss_pred cCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccc-ccccccCCCCCCCCCCcceeeeccchhhccccccCCCHH
Confidence 3455566666566666643469999999987643 11122 234444421 12234566666667 3 2456799
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcC-CccChHHHHHHhhhcC
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGG-MTANKYLMQLQADLTG 422 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG-~~~s~~~~qi~Advlg 422 (431)
|++++++..++..+-++ ..+... -...++|+..|| ...++.+++.++..+.
T Consensus 205 DiAaSLl~mV~~nIg~l-A~~~a~-~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~ 256 (279)
T TIGR00555 205 DIAASLLGLIGNNIGQI-AYLCAL-RYNIDRIVFIGSFLRNNQLLMKVLSYATN 256 (279)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-HcCCCeEEEECCcccCCHHHHHHHHHHHh
Confidence 99999999999866554 333221 235688999999 4668999999988765
No 28
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.99 E-value=0.0031 Score=60.52 Aligned_cols=119 Identities=21% Similarity=0.340 Sum_probs=81.8
Q ss_pred EEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCC-CCCCCCceeEecCCCCCCHHHHHH
Q psy1586 295 YALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAP-YWQRDARSIICGLTDETSKVDIVK 373 (431)
Q Consensus 295 ~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p-~~~~~~~g~~~gl~~~~~~~~~~r 373 (431)
-+.+.|...+|.-++-+.+.++. +.+++.+++.+...+-. + +.++- |-..+ .+.-+....+++|+..
T Consensus 255 ~mN~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~~~v~------i-~S~CaVF~eSe---vi~~~~~G~~~EdI~A 322 (396)
T COG1924 255 TMNDKCAAGTGRFLEVIARRLGV--DVEELGKLALKATPPVK------I-NSRCAVFAESE---VISALAEGASPEDILA 322 (396)
T ss_pred EeccccccccchHHHHHHHHhCC--CHHHHHHHHhcCCCCcc------c-CCeeEEEehHH---HHHHHHcCCCHHHHHH
Confidence 34456777779999999999987 88999988865421100 1 01110 00111 1112345689999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCce-EEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 374 AALEAVCFQTRDILEAMKEDCGVALEK-LLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 374 A~~Egia~~~r~~~~~l~~~~g~~~~~-i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
++.++++-... ..+-+ ..+++. |++.||.++|..+.+.+.+.+|++|.+|+.
T Consensus 323 Gl~~Sv~~~v~---~~~~~--~~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~ 375 (396)
T COG1924 323 GLAYSVAENVA---EKVIK--RVDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPY 375 (396)
T ss_pred HHHHHHHHHHH---HHHhh--ccCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCc
Confidence 99999986653 32322 134444 999999999999999999999999999976
No 29
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.58 E-value=0.025 Score=53.46 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=76.8
Q ss_pred EEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHH
Q psy1586 295 YALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKA 374 (431)
Q Consensus 295 ~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA 374 (431)
-++.-|...+|.-|+-..+.++. +.+++.+++.+... + |+-.+.|+-.+-. .-.+.-+....+++|++++
T Consensus 152 ~MNdkCAAGTGrFLE~~A~~Lgi--~leel~~~a~~~~~-~-----p~~Iss~CtVFAe--Sevi~l~~~G~~~edI~aG 221 (293)
T TIGR03192 152 LMNDKCAAGTGRGMEVISDLMQI--PIADLGPRSFDVET-E-----PEAVSSICVVFAK--SEALGLLKAGYTKNMVIAA 221 (293)
T ss_pred eecCcccccccHHHHHHHHHcCC--CHHHHHHHHHhcCC-C-----CCCcCCcceEecc--HhHHHHHHCCCCHHHHHHH
Confidence 34445666679999999999987 77888877632210 0 1101111111100 0111123456799999999
Q ss_pred HHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 375 ALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 375 ~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
+.++++-.+... +++ .++. +.|+++||.++|+.+.+.+.+.|+++|..
T Consensus 222 l~~sia~rv~~~---~~~-~~i~-~~v~~~GGva~N~~l~~al~~~Lg~~v~~ 269 (293)
T TIGR03192 222 YCQAMAERVVSL---LER-IGVE-EGFFITGGIAKNPGVVKRIERILGIKAVD 269 (293)
T ss_pred HHHHHHHHHHHH---hcc-cCCC-CCEEEECcccccHHHHHHHHHHhCCCcee
Confidence 999999765433 333 2323 56999999999999999999999999883
No 30
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.37 E-value=0.022 Score=55.58 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=81.3
Q ss_pred eEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCC-CCCCceeEecCCCCCCHHHHH
Q psy1586 294 TYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYW-QRDARSIICGLTDETSKVDIV 372 (431)
Q Consensus 294 ~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~-~~~~~g~~~gl~~~~~~~~~~ 372 (431)
..++.-|...+|.-++-..+.++. +.+++.+++.+... |.-.+.++..+ ..+ .+.-+....+++|++
T Consensus 293 F~MNDKCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~-------pv~ISS~CtVFAESE---VIslla~G~~reDIa 360 (432)
T TIGR02259 293 FQMNDRCAAGCGRYLGYIADEMNM--GLHELGPLAMKSSK-------PARINSTCTVFAGAE---LRDRLALGDKREDIL 360 (432)
T ss_pred eeecCcccccchHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CCCcCCcceEEehHH---HHHHHHCCCCHHHHH
Confidence 345556666779999999999987 78888887655321 11011111111 111 111234578999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc-----CCceEecCC
Q psy1586 373 KAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT-----GTPVSSSPI 430 (431)
Q Consensus 373 rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl-----g~pv~~~~~ 430 (431)
+++.++++-.+...+..+. + ..+.|+++||.++|+.+.+.+.+.| +.+|.+++.
T Consensus 361 AGL~~SIA~Rv~s~l~r~~---~-i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~ 419 (432)
T TIGR02259 361 AGLHRAIILRAISIISRSG---G-ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPD 419 (432)
T ss_pred HHHHHHHHHHHHHHHhccc---C-CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCC
Confidence 9999999987766554442 2 2357999999999999999999999 477777653
No 31
>PLN02920 pantothenate kinase 1
Probab=96.24 E-value=0.17 Score=49.60 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=91.0
Q ss_pred cEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy1586 253 QAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS 332 (431)
Q Consensus 253 ~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~ 332 (431)
.+++++||+.-+..+.+ ++.|.-.+++.-||..+-=|...+....+|+++.++|++=.
T Consensus 167 yLLVNIGSGVSilkV~~----------------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd 224 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG----------------------DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGN 224 (398)
T ss_pred eEEEEcCCCEEEEEEeC----------------------CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCC
Confidence 58889999854332211 22333345666777777666666644578999999987532
Q ss_pred -CCCCeEEEeCCCCCC---CCCCCCCCceeEec--CCC-----CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceE
Q psy1586 333 -SHTDVVFVPAFSGLY---APYWQRDARSIICG--LTD-----ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKL 401 (431)
Q Consensus 333 -~~~~l~~~P~~~G~r---~p~~~~~~~g~~~g--l~~-----~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i 401 (431)
..-++ .+-.+.|.. .+....++-++-+| ... +.+++|++|+++--|+..+-++.-...+. ..+++|
T Consensus 225 ~~nvDl-lVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~--~~ik~I 301 (398)
T PLN02920 225 NRVIDM-LVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALR--FGLKRI 301 (398)
T ss_pred ccccCc-eeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEE
Confidence 11122 345555522 23345666666666 221 35799999999999999987754444332 467899
Q ss_pred EEEcCCccCh-HHHHHHhhh
Q psy1586 402 LVDGGMTANK-YLMQLQADL 420 (431)
Q Consensus 402 ~~~GG~~~s~-~~~qi~Adv 420 (431)
+..|...++. ..|+.++-.
T Consensus 302 vf~G~fir~~~~tm~~ls~a 321 (398)
T PLN02920 302 FFGGFFIRGHSYTMDTISVA 321 (398)
T ss_pred EEEeecccCcHHHHHHHHHH
Confidence 9999999976 667655443
No 32
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.09 E-value=0.04 Score=51.28 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=74.4
Q ss_pred EEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCC-CCCCceeEecCCCCCCHHHHHH
Q psy1586 295 YALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYW-QRDARSIICGLTDETSKVDIVK 373 (431)
Q Consensus 295 ~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~-~~~~~g~~~gl~~~~~~~~~~r 373 (431)
-++.-|...+|.-|+-+.+.++. +.+++.+++.+...+.. + +.++..+ ..+ .+.-+....+++|+++
T Consensus 124 ~MNdkCAAGTG~FLe~~A~~L~i--~leel~~~a~~~~~~~~------i-ss~CtVFaeSe---vi~~~~~G~~~edI~a 191 (262)
T TIGR02261 124 KMTSQCASGSGQFLENIARYLGI--AQDEIGSLSQQADNPEK------V-SGICAVLAETD---VINMVSRGISAPNILK 191 (262)
T ss_pred EecCcccccccHHHHHHHHHhCC--CHHHHHHHHhcCCCCCC------c-CCCceEEchhh---HHHHHHCCCCHHHHHH
Confidence 34445666779999999999987 78888887654321100 0 1111111 111 1112345679999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC
Q psy1586 374 AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG 422 (431)
Q Consensus 374 A~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg 422 (431)
++.++++-.+...+..+ +...++|+++||.++|+.+.+.+.+.|+
T Consensus 192 Gl~~sia~r~~~~~~~~----~~~~~~v~~~GGva~n~~~~~~le~~l~ 236 (262)
T TIGR02261 192 GIHESMADRLAKLLKSL----GALDGTVLCTGGLALDAGLLEALKDAIQ 236 (262)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCCcEEEECcccccHHHHHHHHHHhc
Confidence 99999998765444433 3333569999999999999999999884
No 33
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.08 E-value=0.042 Score=54.06 Aligned_cols=118 Identities=20% Similarity=0.303 Sum_probs=78.2
Q ss_pred cccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHH
Q psy1586 298 EGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAAL 376 (431)
Q Consensus 298 ~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~ 376 (431)
.-|...+|..|+-+.+.++. +.+++.+++.+.. .+-.+ +.++-.+ .....+.-+....+++|+++++.
T Consensus 270 dkCAAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~~~pv~I-------sS~CtVF--aeSevIsll~~G~~~eDIaAGl~ 338 (404)
T TIGR03286 270 GICAGASGRFLEMTAKRLGV--DITELGKLALKGMPEKVRM-------NSYCIVF--GIQDLVTALAEGASPEDVAAAAC 338 (404)
T ss_pred CcccccCcHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCc-------cCccccc--ccHhHHHHHHCCCCHHHHHHHHH
Confidence 34555578999999988876 8899988875531 11111 0111110 00111112334588999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 377 EAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 377 Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
.+++-.+... .+++ .++. +.|+++||.++|+.+.+.+.+.+|.+|.+++.
T Consensus 339 ~SIa~rv~~~--l~~~-~~i~-~~VvftGGva~N~gvv~ale~~Lg~~iivPe~ 388 (404)
T TIGR03286 339 HSVAEQVYEQ--QLQE-IDVR-EPVILVGGTSLIEGLVKALGDLLGIEVVVPEY 388 (404)
T ss_pred HHHHHHHHHH--Hhhc-CCCC-CcEEEECChhhhHHHHHHHHHHhCCcEEECCc
Confidence 9999877541 2222 2222 45999999999999999999999999999874
No 34
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=95.23 E-value=0.051 Score=53.26 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCC-ceEecC
Q psy1586 367 SKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGT-PVSSSP 429 (431)
Q Consensus 367 ~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~-pv~~~~ 429 (431)
+++|+++-+.|-.|..+...++.+. .++++|+++|||++|+.+++.+...+.. +|...+
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~ 317 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFP----PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTD 317 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHH
Confidence 6999999999988888877776653 3478999999999999999999998865 776543
No 35
>PLN02902 pantothenate kinase
Probab=95.20 E-value=0.43 Score=51.32 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=91.1
Q ss_pred cEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcC
Q psy1586 253 QAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS 332 (431)
Q Consensus 253 ~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~ 332 (431)
.+++++||+.-+..+.+ ++.|.-.+++.-||.++-=|...+-...+|+++.+++++=.
T Consensus 216 yLLVNIGSGVSilkV~~----------------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd 273 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG----------------------DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGD 273 (876)
T ss_pred eEEEEcCCceEEEEEec----------------------CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCC
Confidence 58889999854332211 22343345666777777666666543579999999986532
Q ss_pred CC-CCeEEEeCCCCCC---CCCCCCCCceeEec--CC-----CCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceE
Q psy1586 333 SH-TDVVFVPAFSGLY---APYWQRDARSIICG--LT-----DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKL 401 (431)
Q Consensus 333 ~~-~~l~~~P~~~G~r---~p~~~~~~~g~~~g--l~-----~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i 401 (431)
.. -++ .+-.+.|.. .+....++-++-+| .. .+.+++|++|+++--|++.+-++.-...+. ..+++|
T Consensus 274 ~~~vDl-lVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~--~~ikrI 350 (876)
T PLN02902 274 NSAIDM-LVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALR--FGLKRI 350 (876)
T ss_pred ccccCe-eeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEE
Confidence 11 123 335556521 12234555555556 21 135799999999999999997765444443 467899
Q ss_pred EEEcCCcc-ChHHHHHHhhhc
Q psy1586 402 LVDGGMTA-NKYLMQLQADLT 421 (431)
Q Consensus 402 ~~~GG~~~-s~~~~qi~Advl 421 (431)
+++|...+ ++.-|+.++-.+
T Consensus 351 vF~G~fIr~h~~tm~~ls~Ai 371 (876)
T PLN02902 351 FFGGFFIRGHAYTMDTISFAV 371 (876)
T ss_pred EEecceecCCcchHHHHHHHH
Confidence 99999988 576777776543
No 36
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.52 Score=45.32 Aligned_cols=117 Identities=25% Similarity=0.311 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHcCCCC-CHHHHHHHHHhcCCCCCeEEEeC-CCCCCCCCCCCCCceeEecCCC----------------
Q psy1586 303 VAGQTFKWLRDNLNIIA-DLNEIESLVQKSSSHTDVVFVPA-FSGLYAPYWQRDARSIICGLTD---------------- 364 (431)
Q Consensus 303 ~~G~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~P~-~~G~r~p~~~~~~~g~~~gl~~---------------- 364 (431)
..|.+++-+.+.+|+.- --..+++++++-. .+-+.+|+ ... .+..-=+|.||.-
T Consensus 159 A~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~--~~~~~fP~~~~~------~~~~DfSFSGLkTa~~~~~~~~~~~~~~~ 230 (342)
T COG0533 159 AAGEAFDKVARLLGLGYPGGPAIEKLAKKGD--PDAFEFPRPMVK------GKNLDFSFSGLKTAVLRLLKKLKQKEELN 230 (342)
T ss_pred hhhHHHHHHHHHhCCCCCCcHHHHHHHhcCC--CCceeCCccccC------CCCcceehHhHHHHHHHHHHhcccccccc
Confidence 34999999999988621 1137888887532 12255665 211 1223345656431
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
..+++|+..+..|.+.-.+....++.-+.+ ..++++++||.+.|..+++++.... |..+..++
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~--~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~ 296 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHT--GKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPP 296 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCC
Confidence 124677999988888777777666554433 5678999999999999999888865 33455554
No 37
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=94.79 E-value=0.11 Score=50.42 Aligned_cols=142 Identities=23% Similarity=0.233 Sum_probs=83.5
Q ss_pred CcEEEEecccceeccccCCccccCCCCceeEEeeecCCCCCceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhc
Q psy1586 252 GQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKS 331 (431)
Q Consensus 252 g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~ 331 (431)
-.+++++||+..+..+.+ ++.|.-.+++.-||.++-=|...+....+|+++.++|++=
T Consensus 157 PyllvniGsGvSi~~v~~----------------------~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G 214 (341)
T PF03630_consen 157 PYLLVNIGSGVSILKVEG----------------------PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKG 214 (341)
T ss_dssp SEEEEEESSSEEEEEEEE----------------------TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH-
T ss_pred cEEEEEcCCceEEEEEeC----------------------CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCC
Confidence 378889998854332211 2234334556677777766666653346899999998653
Q ss_pred C-CCCCeEEEeCCCCCC--CCCCCCCCceeEecCC-------CCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceE
Q psy1586 332 S-SHTDVVFVPAFSGLY--APYWQRDARSIICGLT-------DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKL 401 (431)
Q Consensus 332 ~-~~~~l~~~P~~~G~r--~p~~~~~~~g~~~gl~-------~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i 401 (431)
. ..-++ .+-.+.|.. .+...++..++-+|-- ...+++|++++++--++..+-++.-...+.. .+++|
T Consensus 215 ~~~~vDl-lV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~--~~~~I 291 (341)
T PF03630_consen 215 DNSNVDL-LVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIH--GVKRI 291 (341)
T ss_dssp -GGGTSE-EHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--T--EE
T ss_pred CccccCc-eeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEE
Confidence 2 11222 233344433 1223455555555421 1347899999999999999987655554443 56899
Q ss_pred EEEcCCcc-ChHHHHHHh
Q psy1586 402 LVDGGMTA-NKYLMQLQA 418 (431)
Q Consensus 402 ~~~GG~~~-s~~~~qi~A 418 (431)
+++|...+ ++..++.++
T Consensus 292 ~f~G~~~~~~~~~~~~l~ 309 (341)
T PF03630_consen 292 VFGGSFIRNNPITMRTLS 309 (341)
T ss_dssp EEESGGGTSSCHHHHHHH
T ss_pred EEEeccccCCHHHHHHHH
Confidence 99999987 577888888
No 38
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=94.74 E-value=0.06 Score=52.73 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
.+++|+.+-+.|-.|..+.+.++.+. ..+++|+++|||++|+.+|+.+...+..+|..
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~ 316 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PGPDELLVCGGGARNPTLMERLAALLPTEVAT 316 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEEEECCCcchHHHHHHHHHhcCCcccC
Confidence 58899999999888877777665542 23578999999999999999999988655544
No 39
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.93 E-value=0.15 Score=49.91 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 368 KVDIVKAALEAVCFQTRDILEAMKED-CGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 368 ~~~~~rA~~Egia~~~r~~~~~l~~~-~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
..+.++..++-++-++++.++-+... .+.++++|+++||+++.+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 45778899999999999999976543 356899999999999999999999999999999864
No 40
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=92.99 E-value=0.23 Score=45.95 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
++.+..++.+.-.++..++ + .+++.|+++||+++.+.+.+.+.+.||.||..+.
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~ 226 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQ 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CCCCEEEEECchhcchhHHHHHHHHhCCCcccCC
Confidence 4455555555555544443 2 3668999999999999999999999999997653
No 41
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.26 Score=47.65 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc-CCceE
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT-GTPVS 426 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl-g~pv~ 426 (431)
.+++|+.+.+.|-.+-.+...+. .....++++++||||.+|+++|+-+|..+ |.+|.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~----~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVA----TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh----hccCCCceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 47899999999877766544443 23447799999999999999999999999 55554
No 42
>KOG2201|consensus
Probab=91.72 E-value=0.95 Score=43.01 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=74.3
Q ss_pred CceEEEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCC--CCCCCc-eeEec-----CC
Q psy1586 292 PITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPY--WQRDAR-SIICG-----LT 363 (431)
Q Consensus 292 ~~~~~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~--~~~~~~-g~~~g-----l~ 363 (431)
|+.|--.++++-||..+==+..++-.-.+|||+-++|.+=....-=+++-.+.|-+... ..+++- ++|=. -.
T Consensus 193 ~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK~ 272 (371)
T KOG2201|consen 193 PDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEKE 272 (371)
T ss_pred CCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhcccc
Confidence 44455556666677766445555433468999999887633111112333344433111 011111 11111 12
Q ss_pred CCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc-ChHHHHHHhhh
Q psy1586 364 DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA-NKYLMQLQADL 420 (431)
Q Consensus 364 ~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~-s~~~~qi~Adv 420 (431)
...+++|++||++--|...+-++.-.... ...+++|+..|-..| ++.-|+.+|=.
T Consensus 273 ~~~s~eDia~SlL~mIsnNIGqiAyl~A~--~~ni~rV~FgG~fiR~~~itM~tLsyA 328 (371)
T KOG2201|consen 273 LSVSKEDIARSLLRMISNNIGQIAYLCAL--NENIKRVYFGGFFIRGHPITMKTLSYA 328 (371)
T ss_pred cccChHHHHHHHHHHHHhhHHHHHHHHHH--HhCccEEEEeeeEEecCceehHHHHHH
Confidence 35789999999999999998775433332 457899999999988 56667776643
No 43
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=91.51 E-value=0.49 Score=44.59 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
.++.+..+|-+.-.++..++ ..+++.|+++||+++.+.+.+++++.||.||.+++
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~------~~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~ 253 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIE------GQDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQ 253 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCCEEEEECCcccchhHHHHHHHHhCCCcccCC
Confidence 34555555555544444333 13678999999999999999999999999998754
No 44
>PRK14878 UGMP family protein; Provisional
Probab=90.82 E-value=0.6 Score=45.32 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
.++.++.+++.+.++-.+....+...+.+ ..++|+++||.+.|..+++.+.+.+ |.+|..++
T Consensus 212 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 276 (323)
T PRK14878 212 ERLEDVCYSLRETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 45689999999999888888877776644 4568999999999999999999987 77777654
No 45
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=90.57 E-value=0.39 Score=51.52 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC---CceEecC
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG---TPVSSSP 429 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg---~pv~~~~ 429 (431)
..+++++.+++.++++-.+...++.+.+.+ ..++|+++||.++|..+++.+.+.++ ..|..++
T Consensus 628 g~~~~~IAa~fh~tla~~L~~~a~~~~~~~--g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~ 693 (711)
T TIGR00143 628 GEDRSKIAHIAHKFVASGLVEIATAIAVPF--GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHR 693 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccC
Confidence 357889999999999988888887776543 45689999999999999999988774 5665543
No 46
>PRK09604 UGMP family protein; Validated
Probab=90.53 E-value=1.5 Score=42.81 Aligned_cols=117 Identities=24% Similarity=0.244 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCC---------CCCCHHHHH
Q psy1586 303 VAGQTFKWLRDNLNII-ADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLT---------DETSKVDIV 372 (431)
Q Consensus 303 ~~G~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~---------~~~~~~~~~ 372 (431)
+-|..++.+.+.+|+. ..-..++.+|.. +.....-+|... +. ....=+|.|+. ...++.++.
T Consensus 160 slG~~yd~~t~~LG~~~~~g~kvmgLA~~--g~~~~~~~~~~~-~~-----~~~~~sfsg~~~~~~~~~~~~~~~~~~iA 231 (332)
T PRK09604 160 AAGEAFDKVAKLLGLGYPGGPAIDKLAKQ--GDPDAFKFPRPM-DR-----PGLDFSFSGLKTAVLNTIEKSEQTKADIA 231 (332)
T ss_pred hhhHHHHHHHHHcCCCCCCcHHHHHHHHh--CCCCeEeCCccc-cC-----CCccEecCcHHHHHHHHHHhcCCCHHHHH
Confidence 3499999999998862 111246666632 221111122211 11 11112334432 233578999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 373 KAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 373 rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
+++.+.++-.+...++...+.+ ..++|+++||.+.|..+++.+.+.+ |.++.+++
T Consensus 232 ~s~q~~l~~~l~~~~~~~~~~~--~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 289 (332)
T PRK09604 232 ASFQAAVVDVLVIKTKRALKQT--GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPP 289 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 9999999988888888776544 4568999999999999999999988 77777654
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.74 E-value=0.77 Score=44.94 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc-CCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDC-GVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~-g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
.+.++.+++-++-.++..++.+.... +.++++|+++||+++-+-+...++..||.||++.+
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~ 314 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence 35788889999988888887775333 34689999999999999999999999999998764
No 48
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=89.22 E-value=4 Score=35.48 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=54.1
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
+++++++|. +|+++.+.+.+++ .+++++.+.+.+.++++.+... .. +|+|+..+ ++|
T Consensus 8 ~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~~-------~~-gIgi~~pG----~v~ 64 (179)
T PF00480_consen 8 SIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIERLLADYG-------RS-GIGISVPG----IVD 64 (179)
T ss_dssp EEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHHT-------CE-EEEEEESS----EEE
T ss_pred EEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhcc-------cc-cEEEeccc----cCc
Confidence 579999995 9999998887765 4888999999999999887641 22 88888654 356
Q ss_pred CCCCccc-cccceecCcc
Q psy1586 82 STTGKPL-YNAIVWSDVR 98 (431)
Q Consensus 82 ~~~g~pl-~~~i~w~D~R 98 (431)
.+.|..+ .|...|.+-.
T Consensus 65 ~~~g~i~~~~~~~~~~~~ 82 (179)
T PF00480_consen 65 SEKGRIISSPNPGWENIP 82 (179)
T ss_dssp TTTTEEEECSSGTGTTCE
T ss_pred CCCCeEEecCCCCcccCC
Confidence 6334444 3456687754
No 49
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=89.14 E-value=9.8 Score=37.88 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCc-cChHHHHHHhhhc
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMT-ANKYLMQLQADLT 421 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~-~s~~~~qi~Advl 421 (431)
++-++|..+|.++..+-.+.-.++..++.|+++||.. .++.+++.+.+-+
T Consensus 302 A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 302 AQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 3458888999999999888766665689999999999 6777777766543
No 50
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=88.71 E-value=1 Score=45.39 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh---cC---CCCceEEEEcCCccChHHHHHHhhhcCCceEec
Q psy1586 368 KVDIVKAALEAVCFQTRDILEAMKED---CG---VALEKLLVDGGMTANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 368 ~~~~~rA~~Egia~~~r~~~~~l~~~---~g---~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~ 428 (431)
..+++++-+|.+.-.++..++.+.+. .| ..+..|+++||+++-+.+.++++++|+.||.+.
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 44667777777777777766544322 23 245779999999999999999999999999874
No 51
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=88.66 E-value=3.7 Score=37.33 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred ccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCC--CCCCCCCCceeEec-----C-C-C-CCCH
Q psy1586 299 GSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLY--APYWQRDARSIICG-----L-T-D-ETSK 368 (431)
Q Consensus 299 ~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r--~p~~~~~~~g~~~g-----l-~-~-~~~~ 368 (431)
|++..||..+-=+..++-...+|++|.++++.-..++--+..-.+.|.- -|....++.++=+| . . + +.++
T Consensus 171 GGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~glks~~iAssFGkVf~~r~k~le~F~p 250 (342)
T COG5146 171 GGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIASSFGKVFHHRDKPLEEFTP 250 (342)
T ss_pred cccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCCCchhhHHHHHHHHHhhcCchhhcCc
Confidence 5566677777666666655679999999987643222112233344432 12112222222222 2 1 1 3678
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHH
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLM 414 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~ 414 (431)
.|+.++++-.|.-.+-++.=...++ ..++.|+..|...||.+..
T Consensus 251 ~di~~sll~aisnnigqiAyl~A~~--~n~qNIyfgGSf~rnhl~t 294 (342)
T COG5146 251 SDILASLLGAISNNIGQIAYLVARE--FNTQNIYFGGSFHRNHLLT 294 (342)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHh--hccceEEEeeeeccchhhh
Confidence 8999999988877766653333332 4678999999888887654
No 52
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=88.16 E-value=1.3 Score=43.18 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 368 KVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 368 ~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
+.|+.+++.|.++-.+...++..-+.. ..++|+++||.+.|..+++.+.+.+ +.++..++
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~--~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~ 298 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHC--GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMD 298 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 568999999998888777766654433 5688999999999999999998876 66776664
No 53
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=88.05 E-value=1.2 Score=42.84 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 367 SKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 367 ~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
++.++.+++.+.++-.+...++...+.+ .+++|+++||.+.|..+++.+.+.+ +.+|..++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDT--GPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 4689999999999988888887776644 4578999999999999999988887 55666554
No 54
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=88.01 E-value=1.9 Score=40.27 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC--CceEe
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG--TPVSS 427 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg--~pv~~ 427 (431)
.-++-++++++|....-|-.+...++.+++.|+++||.+++..++..+.+-+. .||.+
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v 328 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIV 328 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEe
Confidence 45567888899999888888877777789999999999999999988887654 45544
No 55
>PTZ00297 pantothenate kinase; Provisional
Probab=87.77 E-value=12 Score=43.65 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCc-cChHHHHHHhhhc
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMT-ANKYLMQLQADLT 421 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~-~s~~~~qi~Advl 421 (431)
.+.+|++|+++--|.+.+-++.-...+ ...+++|+..|+.. .|+..|+.++..+
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~--~~~~~~i~f~G~~i~~~~~~~~~l~~a~ 1416 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSR--VQGVPNIFFAGGFVRDNPIIWSHISSTM 1416 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEEecchhcCCHHHHHHHHHHH
Confidence 458999999999999999775444333 34788999999954 4899999988764
No 56
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=87.63 E-value=1.5 Score=42.57 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhh---cCCceEecC
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL---TGTPVSSSP 429 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Adv---lg~pv~~~~ 429 (431)
.++.++.+++.+.++-.+...++.+.+.+ ..++|+++||.+.|..+++.+.+. .|.+|..++
T Consensus 213 ~~~~diAasfq~~l~~~l~~~a~~~~~~~--g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~ 277 (322)
T TIGR03722 213 ARLEDVCYSLQETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPP 277 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCC
Confidence 34789999999999988888888876644 457899999999999999999984 456666543
No 57
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=87.30 E-value=4.8 Score=38.75 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=52.5
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
.+|++++|. +|+++.+.+.+.+ .+++++.+.+.+.+++++++. +....++.+|||+..+ ++|
T Consensus 9 ~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~---~~~~~~i~gIgva~pG----~vd 70 (318)
T TIGR00744 9 TIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQHI---AKVGHEIVAIGIGAPG----PVN 70 (318)
T ss_pred EEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHhc---CCCccceEEEEEeccc----ccc
Confidence 578999995 8999987665432 267888898988888887653 3445689999998754 236
Q ss_pred CCCCcccc-ccceecCc
Q psy1586 82 STTGKPLY-NAIVWSDV 97 (431)
Q Consensus 82 ~~~g~pl~-~~i~w~D~ 97 (431)
.++|.... |.+-|.+.
T Consensus 71 ~~~g~~~~~~~~~w~~~ 87 (318)
T TIGR00744 71 RQRGTVYFAVNLDWKQE 87 (318)
T ss_pred CCCCEEEecCCCCCCCC
Confidence 53455322 33447554
No 58
>PRK11678 putative chaperone; Provisional
Probab=86.91 E-value=2.5 Score=43.01 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC-CceEec
Q psy1586 362 LTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG-TPVSSS 428 (431)
Q Consensus 362 l~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg-~pv~~~ 428 (431)
+....+++++- .+++.+.-.+...++..-+..+..++.|+++||.++.|.+.+++.+.|+ .|+...
T Consensus 365 ~~~~ItR~efe-~ii~~~l~ri~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g 431 (450)
T PRK11678 365 LATEISQQGLE-EAISQPLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGG 431 (450)
T ss_pred cceeeCHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeC
Confidence 34445666653 3344454555555444333357778999999999999999999999996 577654
No 59
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=86.84 E-value=16 Score=36.38 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCc-cChHHHHHHhhhc
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMT-ANKYLMQLQADLT 421 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~-~s~~~~qi~Advl 421 (431)
++-++|..+|.++..+-.|.-.+...++.|+++||.. +++.+++.+.+-+
T Consensus 298 A~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 298 AKLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 4558889999999998888766633789999999999 7888887776543
No 60
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=86.80 E-value=5.4 Score=37.18 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.++|++++| .+|+++.+.+.+.+ ..+++++.+.+.+++++.... ...+.+|+|+..+ . +
T Consensus 10 t~i~~~l~d-~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~pG--~--v 68 (256)
T PRK13311 10 TKIELGVFD-ENLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIGIPG--L--P 68 (256)
T ss_pred CcEEEEEEC-CCCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEecC--c--E
Confidence 368999999 59999987766542 136778888887777665321 1234578888644 2 4
Q ss_pred eCCCCccccccc-eecC
Q psy1586 81 DSTTGKPLYNAI-VWSD 96 (431)
Q Consensus 81 d~~~g~pl~~~i-~w~D 96 (431)
|.++|....+.+ .|.+
T Consensus 69 d~~~g~i~~~~~~~w~~ 85 (256)
T PRK13311 69 NADDGTVFTANVPSAMG 85 (256)
T ss_pred ECCCCEEEccCCCcccC
Confidence 653455433333 3644
No 61
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=86.79 E-value=1.5 Score=42.39 Aligned_cols=61 Identities=28% Similarity=0.318 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 367 SKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 367 ~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
++.++.+++.+.++-.+...++...+.+ ..++|+++||.+.|..+++.+.+.+ +.++.+++
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~ 294 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKT--GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPP 294 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 4789999999999999888888776544 4568999999999999999999988 77776654
No 62
>CHL00094 dnaK heat shock protein 70
Probab=86.33 E-value=1.3 Score=47.26 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.++.|+++||.++.|.+.++++++||+++.
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~ 357 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPN 357 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCCCcC
Confidence 578999999999999999999999998764
No 63
>PRK07157 acetate kinase; Provisional
Probab=84.43 E-value=20 Score=35.62 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChH-HHHHHhhh
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKY-LMQLQADL 420 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~-~~qi~Adv 420 (431)
++-++|..+|.++..+-.+.-.++..++.|+++||...|.. +++.+.+-
T Consensus 295 A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~ 344 (400)
T PRK07157 295 AKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINK 344 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhh
Confidence 44578889999999998887666656899999999999766 66666554
No 64
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=84.36 E-value=2.3 Score=42.14 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.9
Q ss_pred Cce-EEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 398 LEK-LLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 398 ~~~-i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
+.+ |+++||+++.+.+.+++.+.|+.||++..
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence 455 99999999999999999999999998764
No 65
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=84.21 E-value=1.7 Score=42.43 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=40.8
Q ss_pred CHHHH---HHHHHhhhhHHHHHHHHHHHHhcC-CCCc-eEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 367 SKVDI---VKAALEAVCFQTRDILEAMKEDCG-VALE-KLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 367 ~~~~~---~rA~~Egia~~~r~~~~~l~~~~g-~~~~-~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
+++++ +...++.+.-.++..++....... -.++ .|+++||+++-+.+.+++++.|+.||.+..
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~ 307 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAE 307 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecC
Confidence 44444 444444455555444444311001 1234 699999999999999999999999998654
No 66
>PRK09557 fructokinase; Reviewed
Probab=84.06 E-value=6.7 Score=37.45 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=48.6
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
++|++++|. +|+++.+.+.+.+ .++++++.+.+.+.++++... ...+.+||++..+ ++|
T Consensus 11 ~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~~pG----~vd 69 (301)
T PRK09557 11 KIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA-------TGQRGTVGVGIPG----SIS 69 (301)
T ss_pred cEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh-------cCCceEEEecCcc----cCc
Confidence 579999994 9999887665542 136778888888877776543 1346788888755 246
Q ss_pred CCCCccccccceecC
Q psy1586 82 STTGKPLYNAIVWSD 96 (431)
Q Consensus 82 ~~~g~pl~~~i~w~D 96 (431)
.++|........|.+
T Consensus 70 ~~~g~i~~~~~~~~~ 84 (301)
T PRK09557 70 PYTGLVKNANSTWLN 84 (301)
T ss_pred CCCCeEEecCCcccc
Confidence 545655544445643
No 67
>PRK12440 acetate kinase; Reviewed
Probab=83.57 E-value=24 Score=35.11 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHH
Q psy1586 307 TFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDI 386 (431)
Q Consensus 307 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~ 386 (431)
++.++.+. +. +.+++++++.+- +|++=+ .|.. .+.|-...-.... ..-++-+++..+|.++..
T Consensus 248 vv~~l~~~-~~--s~~e~~~~Ln~~---SGLlg~---sG~s-----~D~R~l~~~~~~g---d~~A~lA~d~f~yri~k~ 310 (397)
T PRK12440 248 IIEFLLKK-GW--SQEKVFNSLNKK---SGFLGV---SGLT-----SDARGILEAMEEG---HEGATLAFEVFTYRVAKY 310 (397)
T ss_pred HHHHHHHc-CC--CHHHHHHHHhcc---ccceEe---cCCC-----CCHHHHHHHHHCC---CHHHHHHHHHHHHHHHHH
Confidence 77888776 65 778888887643 343321 1210 1111110000000 123455788889999999
Q ss_pred HHHHHHhcCCCCceEEEEcCCccChH-HHHHHhhh
Q psy1586 387 LEAMKEDCGVALEKLLVDGGMTANKY-LMQLQADL 420 (431)
Q Consensus 387 ~~~l~~~~g~~~~~i~~~GG~~~s~~-~~qi~Adv 420 (431)
+-.+.-.+| .++.|+++||...|.. +++.+.+-
T Consensus 311 Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~ 344 (397)
T PRK12440 311 IASYLAALD-SLDGIIFTGGIGENSLPIRREILKN 344 (397)
T ss_pred HHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence 888876677 7899999999999766 66655544
No 68
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=83.21 E-value=8.2 Score=36.89 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=47.5
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
++|++++|. +|+++.+.+.+.+ ..+++++.+.+.+.++++... ...+.+|||+.-+ ++|
T Consensus 11 ~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~~igia~pG----~vd 69 (303)
T PRK13310 11 KIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR-------FGCKGSVGIGIPG----MPE 69 (303)
T ss_pred cEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCcceEEEeCCC----ccc
Confidence 579999995 8999987765442 136788888888888776532 1234578887654 246
Q ss_pred CCCCccccccce-ecC
Q psy1586 82 STTGKPLYNAIV-WSD 96 (431)
Q Consensus 82 ~~~g~pl~~~i~-w~D 96 (431)
.++|....+.+. |.+
T Consensus 70 ~~~g~~~~~~~~~w~~ 85 (303)
T PRK13310 70 TEDGTLYAANVPAASG 85 (303)
T ss_pred CCCCEEeccCcccccC
Confidence 534654443343 543
No 69
>PRK12379 propionate/acetate kinase; Provisional
Probab=82.90 E-value=27 Score=34.75 Aligned_cols=48 Identities=13% Similarity=0.271 Sum_probs=37.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccC-hHHHHHHhhh
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTAN-KYLMQLQADL 420 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s-~~~~qi~Adv 420 (431)
++-++|..+|.++..+-.+.-.++ .++.|+++||...| +.+++.+.+-
T Consensus 293 A~lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~ 341 (396)
T PRK12379 293 AQLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEH 341 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence 345788899999999888876677 89999999999986 4445555443
No 70
>PRK13410 molecular chaperone DnaK; Provisional
Probab=82.25 E-value=3.8 Score=43.99 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
+++.|+++||+++.|.+.++++++||+++.
T Consensus 328 dId~VvLVGGssRiP~V~~~l~~~fg~~~~ 357 (668)
T PRK13410 328 DIDEVVLVGGSTRMPMVQQLVRTLIPREPN 357 (668)
T ss_pred hCcEEEEECCccccHHHHHHHHHHcCCCcc
Confidence 578999999999999999999999998754
No 71
>PRK09698 D-allose kinase; Provisional
Probab=81.77 E-value=10 Score=36.20 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=42.2
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
.+|++++|. +|+++.+.+.+.+.. .+++. .+.+.+.+++++++. ..++.+|||+..+ ++|
T Consensus 15 ~i~~~l~d~-~g~i~~~~~~~~~~~--------~~~~~-~~~l~~~i~~~~~~~------~~~i~gigia~pG----~vd 74 (302)
T PRK09698 15 HIRFCLVDA-EGEILHCEKKRTAEV--------IAPDL-VSGLGEMIDEYLRRF------NARCHGIVMGFPA----LVS 74 (302)
T ss_pred EEEEEEEcC-CCCEEEEEEeCCccc--------cchHH-HHHHHHHHHHHHHHc------CCCeeEEEEeCCc----cee
Confidence 578999995 999998777655321 13333 666666666666542 1579999999755 346
Q ss_pred CCCCc
Q psy1586 82 STTGK 86 (431)
Q Consensus 82 ~~~g~ 86 (431)
.++|.
T Consensus 75 ~~~g~ 79 (302)
T PRK09698 75 KDRRT 79 (302)
T ss_pred CCCCE
Confidence 63444
No 72
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=80.10 E-value=4.2 Score=42.45 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc---CCceEecC
Q psy1586 367 SKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT---GTPVSSSP 429 (431)
Q Consensus 367 ~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl---g~pv~~~~ 429 (431)
+..++.+++.+.++-.+...++...+.+| .++|+++||.+.|..+++.+.+.+ +.+|.+++
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g--~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~ 280 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG--KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPE 280 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46789999999999888888877765444 568999999999999999999665 66776654
No 73
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=79.51 E-value=4.9 Score=39.19 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=27.2
Q ss_pred eEEEEcCCccChHHHHHHhhhcCCceEec
Q psy1586 400 KLLVDGGMTANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 400 ~i~~~GG~~~s~~~~qi~Advlg~pv~~~ 428 (431)
.|+++||+|+-+.+.+.+++.|++||.+.
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~ 309 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVA 309 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeC
Confidence 59999999999999999999999999875
No 74
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=79.08 E-value=3.1 Score=40.47 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=27.8
Q ss_pred eEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 400 KLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 400 ~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
.|+++||+++-|.+.+.+++.|+.||.+..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~ 311 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVAD 311 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecC
Confidence 699999999999999999999999998764
No 75
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=78.69 E-value=3 Score=40.50 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCC-C-ceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVA-L-EKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~-~-~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
+++...++.+.-.++..++......... . +.|+++||+++-+.+.+.+.+.|+.||.+..
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~ 308 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAE 308 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecC
Confidence 3444455555555555444431000011 2 2599999999999999999999999987753
No 76
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=77.42 E-value=3.9 Score=43.62 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
.++.|+++||.++.|.+.+++.+.||.++..
T Consensus 326 ~id~ViLvGGssriP~v~~~l~~~fg~~~~~ 356 (627)
T PRK00290 326 DIDEVILVGGSTRMPAVQELVKEFFGKEPNK 356 (627)
T ss_pred hCcEEEEECCcCCChHHHHHHHHHhCCCCCc
Confidence 5789999999999999999999999987643
No 77
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=75.43 E-value=4.2 Score=39.50 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=37.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCC-CCc-eEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 371 IVKAALEAVCFQTRDILEAMKEDCGV-ALE-KLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 371 ~~rA~~Egia~~~r~~~~~l~~~~g~-~~~-~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
++...++.+.-.++..++........ ..+ .|+++||+++-+.+.+.+++.|+.||....
T Consensus 252 ~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~ 312 (335)
T PRK13930 252 ALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAE 312 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecC
Confidence 33444445554444444433110000 123 499999999999999999999999987753
No 78
>PRK12397 propionate kinase; Reviewed
Probab=74.99 E-value=63 Score=32.28 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccC-hHHHHHHhh
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTAN-KYLMQLQAD 419 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s-~~~~qi~Ad 419 (431)
++-++|..+|.++..+-.+.-..| .++.|+++||...| +.+++.+.+
T Consensus 297 A~lA~d~f~yri~k~IGa~~a~lg-gvDaiVFTGGIGEns~~vR~~ic~ 344 (404)
T PRK12397 297 AKLALTLFAERIRATIGSYIMQMG-GLDALVFTGGIGENSARARSAVCH 344 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCchhhCCHHHHHHHHh
Confidence 455788899999998888866555 68999999999986 444555444
No 79
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=74.10 E-value=5.8 Score=42.20 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.++.|+++||.++.|.+.+++++.||.++.
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~ 357 (616)
T PRK05183 328 EVKEVVMVGGSTRVPLVREAVGEFFGRTPL 357 (616)
T ss_pred cCCEEEEECCcccChHHHHHHHHHhccCcC
Confidence 578999999999999999999999998654
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=73.81 E-value=7.1 Score=41.31 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 396 VALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 396 ~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
.+++.|+++||.++.|.+.+++.+.||+++..
T Consensus 307 ~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~ 338 (595)
T PRK01433 307 PNIDGVILVGGATRIPLIKDELYKAFKVDILS 338 (595)
T ss_pred ccCcEEEEECCcccChhHHHHHHHHhCCCcee
Confidence 35899999999999999999999999987653
No 81
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=73.71 E-value=5.9 Score=41.97 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.++.|+++||.++.|.+.+++.+.|+.++.
T Consensus 312 ~id~ViLvGGssriP~V~~~l~~~f~~~~~ 341 (599)
T TIGR01991 312 EIKGVVLVGGSTRMPLVRRAVAELFGQEPL 341 (599)
T ss_pred hCCEEEEECCcCCChHHHHHHHHHhCCCCC
Confidence 578899999999999999999999998654
No 82
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=73.44 E-value=9.7 Score=40.34 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCC---CCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGV---ALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~---~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
.-+++++ ..+++.+.-.+...++..-+..|. .++.|+++||.++.|.+.+++.+.||.++..
T Consensus 290 ~itr~~f-e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~ 354 (595)
T TIGR02350 290 TLTRAKF-EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNK 354 (595)
T ss_pred EEeHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccC
Confidence 3455554 333333333333333332222344 4789999999999999999999999976643
No 83
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.62 E-value=12 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 368 KVDIVKAALEAVCFQTRDILEAMKEDCGV-ALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 368 ~~~~~rA~~Egia~~~r~~~~~l~~~~g~-~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
..+.++-+++.+.-.+++.|+-+....+. .++.|+++||+++-.-+-+.+.+-++.|+++.+
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~van 319 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVAN 319 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeC
Confidence 34788899999999999999888654333 689999999999999999999999999998764
No 84
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=72.20 E-value=4.9 Score=42.49 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.4
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
+++.|.++||.++.|.+.+++.+.|+.++..
T Consensus 328 ~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~ 358 (602)
T PF00012_consen 328 DIDSVLLVGGSSRIPYVQEALKELFGKKISK 358 (602)
T ss_dssp GESEEEEESGGGGSHHHHHHHHHHTTSEEB-
T ss_pred ccceeEEecCcccchhhhhhhhhcccccccc
Confidence 4789999999999999999999999976654
No 85
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=72.13 E-value=27 Score=33.46 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.++|++++| .+|+++...+.+++.. .+.+.+.+.+.+.++++.+.. + ...++.+||+++. +.+
T Consensus 16 t~i~~~l~d-~~g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~~---~-~~~~~iGIgi~~p----g~~ 78 (314)
T COG1940 16 TKIKVALVD-LDGEILLRERIPTPTP--------DPEEAILEAILALVAELLKQA---Q-GRVAIIGIGIPGP----GDV 78 (314)
T ss_pred CEEEEEEEC-CCCcEEEEEEEecCCC--------CchhHHHHHHHHHHHHHHHhc---C-CcCceEEEEeccc----eec
Confidence 368999999 4999999888887642 122567777777777776542 1 2345666666643 345
Q ss_pred eCCCC-ccccccceecCc
Q psy1586 81 DSTTG-KPLYNAIVWSDV 97 (431)
Q Consensus 81 d~~~g-~pl~~~i~w~D~ 97 (431)
|+ .. ....|.+.|.+.
T Consensus 79 ~~-~~~~~~~~~~~~~~~ 95 (314)
T COG1940 79 DN-GTVIVPAPNLGWWNG 95 (314)
T ss_pred cC-CcEEeecCCCCcccc
Confidence 54 22 233455666654
No 86
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=72.07 E-value=23 Score=35.35 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccC-hHHHHHHhhhcC
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTAN-KYLMQLQADLTG 422 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s-~~~~qi~Advlg 422 (431)
++-++|..+|.++..+-.+.-.+...++.|+++||...| +..++++.+.+.
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcC
Confidence 456788899999999888876664478999999999985 667788877654
No 87
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=70.77 E-value=15 Score=34.39 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGI 70 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~i 70 (431)
.++|++|+| ++|+++.+....- ......+.+...+.+.++++++++++ +.++.+|..+.+
T Consensus 8 Tkt~~vl~d-~~g~il~~~~~~~------~n~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~i~~~~~ 67 (271)
T PF01869_consen 8 TKTKAVLVD-ENGNILGRGKGGG------ANYNSVGFEEAMENIKEAIEEALSQA---GLSPDDIAAICI 67 (271)
T ss_dssp SEEEEEEEE-TTSEEEEEEEES-------TTHHHHHHHHHHHHHHHHHHHHHHHH---TTSTTCCCEEEE
T ss_pred heeeeEEEe-CCCCEEEEEEeCC------CCCCCCCcchhhhHHHHHHHHHHHHc---CCCccccceeee
Confidence 368999999 6999887665432 11222467788888888888888775 455566666533
No 88
>PRK07058 acetate kinase; Provisional
Probab=70.47 E-value=13 Score=36.79 Aligned_cols=95 Identities=16% Similarity=0.302 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHH
Q psy1586 307 TFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDI 386 (431)
Q Consensus 307 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~ 386 (431)
.+-++.+..+. +.+++++++.+- +|++=+ .|.- .+.|-.. ... ..-++-++|..+|.++..
T Consensus 248 ~l~~l~~~~~~--s~~el~~~Ln~~---SGLlg~---sG~s-----~D~R~l~---~~~---d~~A~lA~d~f~yri~k~ 308 (396)
T PRK07058 248 VVLHLLKQEGM--SLDEVEDLLYHR---SGLLGV---SGIS-----GDTRDLL---ASD---APEAREALDLFALRIAGE 308 (396)
T ss_pred HHHHHHHhcCC--CHHHHHHHHhcc---cCcEEe---cCCC-----CCHHHHh---hcC---CHhHHHHHHHHHHHHHHH
Confidence 34445444544 678888877643 444332 2211 1222220 011 123566889999999999
Q ss_pred HHHHHHhcCCCCceEEEEcCCc-cChHHHHHHhhhc
Q psy1586 387 LEAMKEDCGVALEKLLVDGGMT-ANKYLMQLQADLT 421 (431)
Q Consensus 387 ~~~l~~~~g~~~~~i~~~GG~~-~s~~~~qi~Advl 421 (431)
+-.+.-.+| .++.|+++||.. +++.+++.+.+-+
T Consensus 309 IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 309 IARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 988876665 789999999999 6777777666543
No 89
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=70.46 E-value=7.7 Score=41.57 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCce
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPV 425 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv 425 (431)
.++.|+++||.+|-|.+.+++.+.||++.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg~~~ 381 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQKDP 381 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhCCCc
Confidence 57899999999999999999999999854
No 90
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=70.26 E-value=11 Score=36.45 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.1
Q ss_pred eEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 400 KLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 400 ~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
-|+++||+|+-+-+-+.+++-++.||.+.+
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~ 305 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETGVPVRVAD 305 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHSS-EEE-S
T ss_pred CEEEEChhhhhccHHHHHHHHHCCCEEEcC
Confidence 499999999999999999999999999876
No 91
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=69.70 E-value=7.2 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.++.|+++||.++.|.+.+++++.||.++.
T Consensus 367 ~i~~ViLvGGssriP~v~~~l~~~f~~~~~ 396 (663)
T PTZ00400 367 ELNDVILVGGMTRMPKVSETVKKIFGKEPS 396 (663)
T ss_pred HCcEEEEECCccCChHHHHHHHHHhCCCcc
Confidence 478999999999999999999999998764
No 92
>KOG2708|consensus
Probab=69.64 E-value=70 Score=29.17 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHcCCCCCHH---HHHHHHHhcCCCCCeEEEeCCC-CCCCCCCCCCCceeEec--------CC--CCCCHH
Q psy1586 304 AGQTFKWLRDNLNIIADLN---EIESLVQKSSSHTDVVFVPAFS-GLYAPYWQRDARSIICG--------LT--DETSKV 369 (431)
Q Consensus 304 ~G~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~P~~~-G~r~p~~~~~~~g~~~g--------l~--~~~~~~ 369 (431)
-|+.++.|.+.+...++.. .++++|++- ...+=+||-. |--. .-.|.+.+ +. ...+++
T Consensus 157 vGNClDRFAR~lklsN~PsPGynieq~AK~g---k~~ieLPY~VKGMDv-----SfSGiLs~ie~~a~~~~~~~~~~t~~ 228 (336)
T KOG2708|consen 157 VGNCLDRFARVLKLSNDPSPGYNIEQLAKKG---KNYIELPYTVKGMDV-----SFSGILSYIEDLAEELLKPSSEVTKE 228 (336)
T ss_pred hhhhHHHHHHHhcCCCCCCCCcCHHHHHHhc---cceeecceeeecccc-----chHHHHHHHHHHHhhhhcccccccHH
Confidence 3889999988875522211 256666542 3356678742 3211 11111111 11 234889
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhh
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Adv 420 (431)
|+-.++.|-+.-.+..+-|+.-. ...-+++.++||.--|..+.+|+|-.
T Consensus 229 DLCySLQEtvFamLVEiTERAMA--h~~s~evLIVGGVGCN~RLQeMM~~M 277 (336)
T KOG2708|consen 229 DLCYSLQETVFAMLVEITERAMA--HCGSKEVLIVGGVGCNERLQEMMAIM 277 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hcCCCcEEEEecccccHHHHHHHHHH
Confidence 99999999887666677666433 23557899999999999999988765
No 93
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=66.49 E-value=25 Score=34.58 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=40.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC--CceEec
Q psy1586 371 IVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG--TPVSSS 428 (431)
Q Consensus 371 ~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg--~pv~~~ 428 (431)
.++.+++-.++.+...+-.+.-.++-+++.|+++||.++|+.+++.+.+-+. .||.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~ 326 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVY 326 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEe
Confidence 4566777777777777777765543368999999999998766555555433 566654
No 94
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=65.55 E-value=12 Score=37.38 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=44.5
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCC------cee-eC-HHHHHHHHHHHHHHHHHhhh-hcCCCCCCeeEEEEec
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEG------WVE-QD-PMVILHLVEECIEKCVGYLV-DLDINPNDIVAIGITN 72 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g------~~e-~d-~~~~~~~~~~~l~~~~~~~~-~~~~~~~~I~~I~is~ 72 (431)
.+.+.++|..+|++++..+..+|...-... ++. .+ .+++-+.+.+.++++++++. ++++++++|..|.|+|
T Consensus 12 ti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~G 91 (412)
T PF14574_consen 12 TIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVG 91 (412)
T ss_dssp EEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE
T ss_pred heeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEe
Confidence 578899999899999999998886532211 122 11 45666666666666666643 4578889998888876
No 95
>PRK03011 butyrate kinase; Provisional
Probab=64.67 E-value=20 Score=35.34 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcC--CceEe
Q psy1586 371 IVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG--TPVSS 427 (431)
Q Consensus 371 ~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg--~pv~~ 427 (431)
.++.+++-.++.+...+-.+.-.++.+++.|+++||.+.++.+++.+.+.+. .||.+
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i 327 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIV 327 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEE
Confidence 4567888888888888877766554478999999999998877766655443 25544
No 96
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.38 E-value=19 Score=38.24 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCC
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGT 423 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~ 423 (431)
..+++.++.+...+++-.+..++..+.+. ..+++|.++||...|+.+++-+++.+..
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~--~gi~~V~lsGGVf~N~~l~~~~~~~l~~ 719 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKK--YGINKVVLSGGVFQNRLLLERLAKYLKK 719 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccEEEeeCCeeecHHHHHHHHHHHHh
Confidence 46788899999999998888888888764 4577999999999999999999998874
No 97
>PLN03184 chloroplast Hsp70; Provisional
Probab=61.58 E-value=23 Score=38.08 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
+++.|+++||.++.|.+.+++.+.||+++.
T Consensus 365 dId~ViLvGGssriP~V~~~i~~~fg~~~~ 394 (673)
T PLN03184 365 DIDEVILVGGSTRIPAVQELVKKLTGKDPN 394 (673)
T ss_pred HccEEEEECCccccHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999998764
No 98
>PRK13411 molecular chaperone DnaK; Provisional
Probab=59.99 E-value=28 Score=37.41 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHH-HHHHhcCCC---CceEEEEcCCccChHHHHHHhhhcC-CceE
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILE-AMKEDCGVA---LEKLLVDGGMTANKYLMQLQADLTG-TPVS 426 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~-~l~~~~g~~---~~~i~~~GG~~~s~~~~qi~Advlg-~pv~ 426 (431)
..+++++ ..+++.+.-.+...++ .|++ .+.. ++.|+++||.++.|.+.+++.+.|+ +++.
T Consensus 293 ~itR~~f-e~l~~~l~~~~~~~i~~~L~~-a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~ 357 (653)
T PRK13411 293 ELTRAKF-EELTKDLVEATIEPMQQALKD-AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPD 357 (653)
T ss_pred EEcHHHH-HHHHHHHHHHHHHHHHHHHHH-cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcC
Confidence 3456554 3333333333333333 3333 4553 7899999999999999999999997 4443
No 99
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=58.89 E-value=31 Score=33.97 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCce-EEEEcCCccChHHHHHHhhhcCCc-eEecC
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEK-LLVDGGMTANKYLMQLQADLTGTP-VSSSP 429 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~-i~~~GG~~~s~~~~qi~Advlg~p-v~~~~ 429 (431)
....|++.++..-+--.+...++.+.+.+| .++ |+++||.+-|-.+++.+++-.+.+ |.+++
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~P 196 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVLHLVRHLLERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPP 196 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--T
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECC
Confidence 466777755554444444445555555455 445 999999999999999999885543 55543
No 100
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=58.54 E-value=51 Score=30.90 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCe-EEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceE
Q psy1586 1 MSKSTIVFAASTSE-LLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETT 77 (431)
Q Consensus 1 ~s~K~~l~d~~~g~-~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~ 77 (431)
.++|++|+| ++++ +.......++.. + .+| .++..+++++++++ .|+...+|..|+.||.+...
T Consensus 11 tttK~Vlid-~~~~~~~~~~~~~~~~~---~----~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~TGYGR~~ 74 (262)
T TIGR02261 11 GAIKTVLFE-VDGDKEECLAKRNDRIR---Q----RDP---FKLAEDAYDDLLEE---AGLAAADVAYCATTGEGESL 74 (262)
T ss_pred ccEEEEEEe-cCCCeeEEEEEEEecCC---C----CCH---HHHHHHHHHHHHHH---cCCChhheEEEEEECCchhh
Confidence 368999999 3444 222223322221 1 122 23345555666554 35556799999999998754
No 101
>KOG0103|consensus
Probab=57.23 E-value=25 Score=37.14 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEec
Q psy1586 368 KVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 368 ~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~ 428 (431)
.+++..-+++=+-.-+...++.. .+.+-++..|=++||.+|.|.+-+++++.||++..+.
T Consensus 305 fEel~~plL~rv~~p~~~~l~d~-~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~T 364 (727)
T KOG0103|consen 305 FEELSAPLLERVEVPLLKALADA-KLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRT 364 (727)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh-cCccccceeEEEecCcccchHHHHHHHHHhCCccccc
Confidence 34555566665555554444442 1223356688899999999999999999999998654
No 102
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=57.17 E-value=36 Score=32.00 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=61.7
Q ss_pred cchhhHHHHHHHHcCCCCC-HHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCC----HHHHHHHHH
Q psy1586 302 AVAGQTFKWLRDNLNIIAD-LNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETS----KVDIVKAAL 376 (431)
Q Consensus 302 ~~~G~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~----~~~~~rA~~ 376 (431)
...|..++-+.+.++.... -..+++++.+. +... +|.- ..+..=+|.|+.-..- ..++.+++.
T Consensus 135 ~~~ge~~dk~~~~l~l~~~~g~~le~la~~~---~~~~-~p~~--------~~~~~~sFsG~~t~~~~~i~~~~iA~s~q 202 (268)
T PF00814_consen 135 DAIGEAFDKVARLLGLPYPGGPALEKLASEG---EAFK-FPRP--------LKNCDFSFSGLKTAVYRLIEKADIAASFQ 202 (268)
T ss_dssp SCHHHHHHHHHHHTT--SSHHHHHHHHHCT----S-------S--------EETTEEEEHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccHHHHhhHHHHhccccccCcHHHHHHHhC---Ccce-eccc--------eeeeeEEEEcccHHHHHHhhhhHHHHHHH
Confidence 4468888888888865211 12466666532 2211 2211 1113445555532111 156677777
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc--CCceEec
Q psy1586 377 EAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT--GTPVSSS 428 (431)
Q Consensus 377 Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl--g~pv~~~ 428 (431)
+.++-.+...+....+. ...+.++++||.+.|..+++.+.+.. +.++..+
T Consensus 203 ~~~~~~l~~~~~~a~~~--~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p 254 (268)
T PF00814_consen 203 EAIADHLAKKAPRALEK--PRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFP 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE--
T ss_pred HHHHHHHHHHHHHHHHh--hcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcC
Confidence 77666655555543222 36789999999999999988876543 5555544
No 103
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=56.77 E-value=20 Score=32.45 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=36.6
Q ss_pred HHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCC-ccChHHHHHHhhhcCCc
Q psy1586 374 AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGM-TANKYLMQLQADLTGTP 424 (431)
Q Consensus 374 A~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~-~~s~~~~qi~Advlg~p 424 (431)
|++.-.-.+.++++|.|++ .|++.+-++.+||. ..+.++-|+=||+...+
T Consensus 163 alMTttm~~~~~viE~L~e-eGiRd~v~v~vGGApvtq~~a~~iGAD~~~~d 213 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKE-EGIRDKVIVMVGGAPVTQDWADKIGADAYAED 213 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccCeEEeecCccccHHHHHHhCCCccCcC
Confidence 4444555667999999987 58887766666777 56788888888887643
No 104
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.34 E-value=60 Score=30.67 Aligned_cols=54 Identities=4% Similarity=0.117 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEeccc
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~ 74 (431)
.++++++|. +|+++.+.+.+++. ..+++.+.+.+.+.++++. .++.+|||+..+
T Consensus 12 ~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~----------~~~~~igi~~pG 65 (291)
T PRK05082 12 KIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQ----------AQADRVAVASTG 65 (291)
T ss_pred EEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhh----------hcCcEEEEeCcc
Confidence 578999995 99999877665531 1356777777777776643 235678888654
No 105
>PRK13329 pantothenate kinase; Reviewed
Probab=56.01 E-value=38 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.+|.+-+...++.|++..+...++.+++..+.+ -.|+++||.++ +++..+..++.
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda~------~l~~~l~~~~~ 230 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAAW------KLAPSLTVPFE 230 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhcCCCCE
Confidence 478888999999999999999999998765533 37999999976 34444454443
No 106
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=54.23 E-value=27 Score=28.23 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=29.4
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEeccc
Q psy1586 35 QDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74 (431)
Q Consensus 35 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~ 74 (431)
-+++++++++.+++.++++. -++++++|.+|-||.+.
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 57899999999999999875 35788999999998764
No 107
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=54.09 E-value=50 Score=31.49 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccc
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRE 75 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~ 75 (431)
.++|++|+| + ++++.....+.. .+|. ++..++++++++++ |....+|..++.||.+.
T Consensus 42 tt~K~Vlld-~-~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~~---g~~~~~v~~~~~TGyGr 98 (293)
T TIGR03192 42 VSSQAVLVC-D-GELYGYNSMRTG----------NNSP---DSAKNALQGIMDKI---GMKLEDINYVVGTGYGR 98 (293)
T ss_pred hhEEEEEEe-C-CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHHc---CCcccceEEEEEECcch
Confidence 368999999 4 576654443321 1222 24455555665543 55556899999988875
No 108
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=52.63 E-value=21 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcC-Cce
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTG-TPV 425 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg-~pv 425 (431)
.++.|+++||.+|.|.+.+++.+.|+ .++
T Consensus 332 ~i~~ViLvGGssriP~v~~~i~~~f~~~~~ 361 (653)
T PTZ00009 332 SVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361 (653)
T ss_pred HCcEEEEECCCCCChhHHHHHHHHhCCCCC
Confidence 47899999999999999999999996 454
No 109
>KOG1794|consensus
Probab=50.39 E-value=69 Score=30.38 Aligned_cols=60 Identities=7% Similarity=0.040 Sum_probs=39.6
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCC-eeEEEEe
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPND-IVAIGIT 71 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-I~~I~is 71 (431)
+.|.+++| +++++++.++..-..+.. ...+..-+.+.+.++++.++ +|++++. +++++++
T Consensus 14 ~s~~Vivd-~~~~~~~~a~~~~Tnh~~------ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 14 CSRLVIVD-EDGTILGRAVGGGTNHWL------IGSTTCASRIEDMIREAKEK---AGWDKKGPLRSLGLG 74 (336)
T ss_pred eeEEEEEC-CCCCEeeEeecccccccc------CCchHHHHHHHHHHHHHHhh---cCCCccCccceeeee
Confidence 57899999 699999988876543322 22445666667766666554 5777666 6665543
No 110
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=48.88 E-value=56 Score=32.08 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEe
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~ 80 (431)
.|+|++|||. +++++.+....... .-+ +.+.+.+.+.-.++.+.+.+++.++...+|.+| +.+.|.+.+
T Consensus 10 ts~k~alf~~-~~~~~~~~~~~~~~---~~~----~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av---~~RgG~~~~ 78 (351)
T TIGR02707 10 TSTKLAVFED-ERPLFEETLRHSVE---ELG----RFKNVIDQFEFRKQVILQFLEEHGISISKLDAV---VGRGGLLKP 78 (351)
T ss_pred hhheEEEEeC-CCceeeeeecCCHH---Hhc----ccccHHHHHHHHHHHHHHHHHHcCCCcccccEE---EECCCCCce
Confidence 4899999994 88777654433211 111 222333333322333333344445555678777 444455554
Q ss_pred eCCCCc
Q psy1586 81 DSTTGK 86 (431)
Q Consensus 81 d~~~g~ 86 (431)
-. .|.
T Consensus 79 v~-Gg~ 83 (351)
T TIGR02707 79 IP-GGT 83 (351)
T ss_pred ec-cee
Confidence 44 344
No 111
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=48.25 E-value=35 Score=32.64 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=45.6
Q ss_pred CCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCCceEE--EEcCCcc---ChHH---HHHHhhhc
Q psy1586 351 WQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMK-EDCGVALEKLL--VDGGMTA---NKYL---MQLQADLT 421 (431)
Q Consensus 351 ~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~~~~l~-~~~g~~~~~i~--~~GG~~~---s~~~---~qi~Advl 421 (431)
+|....-.|+.+.-+|+-.+++-..+ +.-.+.+. .... ..+++. +-||++. +.+| +|-+||-+
T Consensus 142 yd~~~n~g~v~vg~s~dTa~Fav~~i-------~~WW~~~g~~~yp-~a~~lli~~D~GgsN~~r~r~wk~~L~~la~~~ 213 (311)
T PF07592_consen 142 YDPAANEGWVSVGTSHDTADFAVDSI-------RRWWEEMGKARYP-HAKRLLITADNGGSNGSRRRLWKKRLQELADET 213 (311)
T ss_pred EeccCCeEEEEEecCcccHHHHHHHH-------HHHHHHhChhhcC-chheEEEeccCCCCccchhHHHHHHHHHHHHHh
Confidence 35666667777777777777765544 55666662 2221 245544 4457765 4666 67889999
Q ss_pred CCceEecC
Q psy1586 422 GTPVSSSP 429 (431)
Q Consensus 422 g~pv~~~~ 429 (431)
|++|.++.
T Consensus 214 gl~I~v~h 221 (311)
T PF07592_consen 214 GLSIRVCH 221 (311)
T ss_pred CCEEEEEE
Confidence 99998864
No 112
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=47.45 E-value=42 Score=29.36 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=46.8
Q ss_pred CcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d 81 (431)
.+-++++|. +..++...+.+.. |++....+.++++++++. .++++.+|..|.++++...=-++.
T Consensus 10 ~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT~~tNAl~e 73 (176)
T PF05378_consen 10 FTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTTVATNALLE 73 (176)
T ss_pred cEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccHHHHHHHHh
Confidence 467899994 6588888888753 335566777777777654 355678899999888765544554
Q ss_pred CCCCcc
Q psy1586 82 STTGKP 87 (431)
Q Consensus 82 ~~~g~p 87 (431)
. +|.+
T Consensus 74 ~-~g~~ 78 (176)
T PF05378_consen 74 R-KGAR 78 (176)
T ss_pred c-cCCC
Confidence 4 3533
No 113
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=46.53 E-value=40 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
.++.+|=+|-+....+.-++..... ...+..|+++||+++-+-...+..++|++||++..
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~g~~-~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~ 352 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKSGLP-NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGV 352 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCcc-ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCC
Confidence 3455555555555554444443211 22468899999999999999999999999998753
No 114
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=45.59 E-value=59 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=15.0
Q ss_pred CcEEEEEeCCCCeEEEEEEee
Q psy1586 2 SKSTIVFAASTSELLTYHKVE 22 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~~ 22 (431)
.+|++++| .+|+++...+.+
T Consensus 12 ~i~~a~~d-~~g~~~~~~~~~ 31 (99)
T smart00732 12 GIGVAVVD-ETGKLADPLEVI 31 (99)
T ss_pred eEEEEEEC-CCCCEecCEEEE
Confidence 57899999 589988765554
No 115
>KOG2707|consensus
Probab=45.42 E-value=62 Score=31.49 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhhhhHHHHHH----HHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc
Q psy1586 367 SKVDIVKAALEAVCFQTRDI----LEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT 421 (431)
Q Consensus 367 ~~~~~~rA~~Egia~~~r~~----~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl 421 (431)
+..|+...+.+.++..+..- ++.+.. ....++.++++||.++|..+...+.+..
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l-~~~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLL-QPKNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCceEEEcCCccchHHHHHHHHHHH
Confidence 46677777777766655443 333332 2456778999999999999988887764
No 116
>PRK13321 pantothenate kinase; Reviewed
Probab=44.55 E-value=45 Score=31.07 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+.+-..++.+.+..+...++.+++..+.+ -.|+++||.++
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~ 226 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGP-PRVIATGGFAS 226 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCcHH
Confidence 467888889999999999999999998876644 46999999765
No 117
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=44.45 E-value=71 Score=29.82 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHH
Q psy1586 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQ 417 (431)
Q Consensus 370 ~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~ 417 (431)
.....+++..+..+...+..+.+..+.....|+++||..+|..+.+-+
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l 240 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKAL 240 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHH
Confidence 345667777777777777666554443333499999999997766555
No 118
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=43.81 E-value=47 Score=30.73 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccC
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTAN 410 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s 410 (431)
..|.+.+-..++.|.+..+...++.+++..+.+ -+++++||.++-
T Consensus 175 ~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~~ 219 (243)
T TIGR00671 175 KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRK-FAVVITGGDGKY 219 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCchHh
Confidence 467888999999999999999999998766533 469999998874
No 119
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=43.80 E-value=38 Score=27.33 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.5
Q ss_pred eeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEeccc
Q psy1586 34 EQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74 (431)
Q Consensus 34 e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~ 74 (431)
+-+++++++++.+++.++++. -++++++|.+|-||.+.
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T~ 49 (117)
T cd02185 12 ENTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 347889999999999998775 35788999999999764
No 120
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=43.55 E-value=39 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.5
Q ss_pred eeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEeccc
Q psy1586 34 EQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74 (431)
Q Consensus 34 e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~ 74 (431)
+-+.+++++++.+++.++++. -++++++|.+|-||.+.
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVTE 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEecC
Confidence 457889999999999998775 35788999999999764
No 121
>PRK13326 pantothenate kinase; Reviewed
Probab=43.23 E-value=46 Score=31.22 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
..|.+.+-..++.|.+..+..+++.++++.+.+ -.|+++||.++
T Consensus 185 ~nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~-~~vv~TGG~a~ 228 (262)
T PRK13326 185 LSTSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE-FNLIITGGNSN 228 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 467888889999999999999999998876533 46999999775
No 122
>PRK13331 pantothenate kinase; Reviewed
Probab=43.17 E-value=48 Score=30.86 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+.+-..++.|.+..+..+++++++..+ + -+|+++||.++
T Consensus 173 ~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~-~-~~vi~TGG~a~ 215 (251)
T PRK13331 173 TNTQEAIQSGVIYTILAGLRDFIEDWLSLFP-D-GKIVLTGGDGE 215 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCHH
Confidence 3678889999999999999999999988765 4 46999999875
No 123
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=42.98 E-value=67 Score=30.62 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCH-HHHHHHHHHHHHHHHHhhhhcCCCCCCeeE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDP-MVILHLVEECIEKCVGYLVDLDINPNDIVA 67 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~-~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~ 67 (431)
.++|++|.| .+|+++...... |--..-++ +.-++.+.++++++..+ +|.++++|.+
T Consensus 15 Tkt~a~l~~-~~g~vlg~g~sG-------pAN~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~~ 71 (301)
T COG2971 15 TKTRAVLAD-EDGNVLGRGKSG-------PANIQLVGKEEAVRNIKDAIREALDE---AGLKPDEIAA 71 (301)
T ss_pred cceEEEEEc-CCCcEEEEeccC-------CceecccchHHHHHHHHHHHHHHHHh---cCCCHHHhCc
Confidence 478999999 699999877543 22233455 78888888888888654 4666666644
No 124
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=42.88 E-value=79 Score=31.58 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIV 79 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~ 79 (431)
.++|++++| +++++.....+.. ++ .++..+++++++++ .|+...+|..|++||.+...+.
T Consensus 154 TttK~Vl~d--d~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~i~~TGyGR~~i~ 213 (404)
T TIGR03286 154 TTTKAVVME--DNEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEAIGTTGYGRFTIG 213 (404)
T ss_pred hheeeEEEc--CCeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeEEEeeeecHHHHh
Confidence 368999998 3588876555321 11 23455555555544 3666688999999999876663
No 125
>PRK13320 pantothenate kinase; Reviewed
Probab=42.64 E-value=81 Score=29.20 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceE
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~ 426 (431)
.+|.+.+...++.|.+..+...++.+++..+ + -.|+++||.++ +++..+..++.
T Consensus 173 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~-~-~~vi~TGG~a~------~l~~~l~~~~~ 226 (244)
T PRK13320 173 RSTEECIRSGVVWGCVAEIEGLIEAYKSKLP-E-LLVILTGGDAP------FLASRLKNTIF 226 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCHH------HHHHhcCCccE
Confidence 4678888889999999999899999987665 3 47999999976 34444454443
No 126
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=42.42 E-value=39 Score=31.45 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=26.7
Q ss_pred CceEEEEcCC--ccChHHHHHHhhhcCCceEec
Q psy1586 398 LEKLLVDGGM--TANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 398 ~~~i~~~GG~--~~s~~~~qi~Advlg~pv~~~ 428 (431)
.+-|+++||. +..+.-.|.+|..||+|++.-
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCcccC
Confidence 6778999965 889999999999999998753
No 127
>PRK13327 pantothenate kinase; Reviewed
Probab=41.58 E-value=56 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+-+...++.+++..+...++.+++..+.+ -+|+++||.++
T Consensus 169 ~~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~-~~vilTGG~A~ 212 (242)
T PRK13327 169 NDTDDALTSGCDGAAVALIERSLQHAHRSLGQP-VRLLVHGGGAP 212 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 467888989999999999988899988766533 36999999976
No 128
>PRK13321 pantothenate kinase; Reviewed
Probab=41.13 E-value=98 Score=28.77 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEec
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~ 72 (431)
.++|.++|| .+ +++...+.+.+. ..+++++...+.+.+++. +.++++|.+|++++
T Consensus 10 T~ik~gl~~-~~-~i~~~~~~~T~~--------~~~~~~~~~~l~~l~~~~-------~~~~~~i~~i~vss 64 (256)
T PRK13321 10 TNIKLGVFD-GD-RLLRSFRLPTDK--------SRTSDELGILLLSLFRHA-------GLDPEDIRAVVISS 64 (256)
T ss_pred CeEEEEEEE-CC-EEEEEEEEecCC--------CCCHHHHHHHHHHHHHHc-------CCChhhCCeEEEEe
Confidence 368999999 34 777655544321 234567777666655442 23345799999986
No 129
>PRK13322 pantothenate kinase; Reviewed
Probab=41.13 E-value=56 Score=30.31 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+.+...++.+++..+...++.+++..+.+ -+++++||.++
T Consensus 175 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vilTGG~a~ 218 (246)
T PRK13322 175 RNTVDAVERGCLLMLRGFIESQLEQARELWGPD-FEIFLTGGDAP 218 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 467888999999999999999999998766533 47999999976
No 130
>PRK13328 pantothenate kinase; Reviewed
Probab=40.92 E-value=55 Score=30.51 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+.+...++.+.+..+...++.+++..+.+ -.|+++||.++
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGGda~ 226 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAP-VRLVLSGGAAD 226 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 568888999999999999999999998776533 47999999976
No 131
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=40.41 E-value=91 Score=30.52 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=39.8
Q ss_pred cEEEEEeCCCCeEEEEEEeecceecCCC-Cce-eeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecc
Q psy1586 3 KSTIVFAASTSELLTYHKVELETLTPKE-GWV-EQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73 (431)
Q Consensus 3 ~K~~l~d~~~g~~l~~~~~~~~~~~~~~-g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~ 73 (431)
+-++|+| ++|+++...+.... .+.. |.+ +.....-.+.+...+++++++ +++...+|.+|++|.-
T Consensus 13 tsvAl~~-~~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Iavt~G 79 (345)
T PTZ00340 13 LGVGIVT-SDGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSDISLICYTKG 79 (345)
T ss_pred hEEEEEE-CCCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEecC
Confidence 3478888 46788876655443 1222 322 233444555666666666554 4677889999999863
No 132
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=38.47 E-value=87 Score=27.69 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCc--cChHHHHHHhhhcCCceEecCC
Q psy1586 362 LTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMT--ANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 362 l~~~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~--~s~~~~qi~Advlg~pv~~~~~ 430 (431)
++...+++|+ ..++..-+..++..|..++++++.++.. |||-....+|.-+|+.+..++.
T Consensus 169 ItS~ikrgDl---------~~i~rk~elYer~~gvki~~vivitpFihdr~p~~~kAmAe~mGIeii~p~~ 230 (231)
T COG5493 169 ITSAIKRGDL---------PVIRRKKELYERAKGVKINKVIVITPFIHDRYPDRVKAMAERMGIEIIPPEE 230 (231)
T ss_pred ehhhhhccch---------HHHHHHHHHHHHhcCCccceEEEEcccccccChHHHHHHHHHcCceecCCCC
Confidence 4444555555 3446666777777799999999999995 4899999999999999987764
No 133
>PRK13318 pantothenate kinase; Reviewed
Probab=37.89 E-value=62 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
.+|.+-+...++.+.+..+...++++++..+.+ -+|+++||.++
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~-~~vi~TGG~a~ 226 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD-PKVIATGGLAP 226 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCchH
Confidence 467888889999999999999999998866533 46999999976
No 134
>PRK13324 pantothenate kinase; Reviewed
Probab=36.60 E-value=71 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
+|.+-+...++-|.+..+...++.+++..+.+ -+++++||.++
T Consensus 184 nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~-~~vi~TGG~a~ 226 (258)
T PRK13324 184 DTKTNIRSGLYYGHLGALKELKRRSVEEFGSP-VYTIATGGFAG 226 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCChH
Confidence 56777888888888888888888887766643 36999999874
No 135
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=35.65 E-value=1e+02 Score=29.70 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=38.4
Q ss_pred EEEEEeCCCCeEEEEEEeecceecCCCCce-eeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecc
Q psy1586 4 STIVFAASTSELLTYHKVELETLTPKEGWV-EQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73 (431)
Q Consensus 4 K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~ 73 (431)
-++|++ .++++++..+.... .+..|.. +.....--+.+...+++++++ .++++.+|++|++|.-
T Consensus 11 s~al~~-~~~~i~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~Iavt~g 75 (322)
T TIGR03722 11 GVGIVD-EDGEILANVSDTYV--PEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLEDIDAVAFSQG 75 (322)
T ss_pred EEEEEE-CCCeEEEEEEeecc--cCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEecC
Confidence 467888 46788876665442 2233432 223344444455556666554 4777889999999853
No 136
>PRK03011 butyrate kinase; Provisional
Probab=35.56 E-value=64 Score=31.80 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCC--CCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPK--EGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~--~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v 78 (431)
+|+|++||+ +.+.+......++...-. +... |-.++ ..+.+.+.+++.++...++.+| +.+.|++
T Consensus 12 tstk~a~~~--~~~~~~~~~~~h~~~~~~~~~~~~--~q~~~------r~~~i~~~l~~~g~~~~~l~av---~~RgG~~ 78 (358)
T PRK03011 12 TSTKIAVFE--DEKPIFEETLRHSAEELEKFKTII--DQYEF------RKQAILDFLKEHGIDLSELDAV---VGRGGLL 78 (358)
T ss_pred chheEEEEc--CCceeeeeccccCHHHHhcCCCcc--chHHH------HHHHHHHHHHHcCCChhcceEE---EEcCCCC
Confidence 589999998 457777777766543211 2222 22222 2233333344456666777776 3344444
Q ss_pred EeeCCCCc
Q psy1586 79 VWDSTTGK 86 (431)
Q Consensus 79 ~~d~~~g~ 86 (431)
-.=. .|.
T Consensus 79 ~~v~-gG~ 85 (358)
T PRK03011 79 KPIP-GGT 85 (358)
T ss_pred cccC-CCC
Confidence 3323 354
No 137
>KOG0100|consensus
Probab=35.49 E-value=99 Score=30.73 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=24.4
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcC
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTG 422 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg 422 (431)
++.+|+++||.+|-|-..|++-|.|+
T Consensus 362 dideiVLVGGsTrIPKvQqllk~fF~ 387 (663)
T KOG0100|consen 362 DIDEIVLVGGSTRIPKVQQLLKDFFN 387 (663)
T ss_pred cCceEEEecCcccChhHHHHHHHHhC
Confidence 68999999999999999999999984
No 138
>PRK13318 pantothenate kinase; Reviewed
Probab=35.05 E-value=1.6e+02 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEec
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~ 72 (431)
.++|..++| + |+++...+.+.+.. ..++++...+.+ +++. .+.+..+|.+|++++
T Consensus 10 T~iK~al~d-~-g~i~~~~~~~t~~~--------~~~~~~~~~l~~----l~~~---~~~~~~~i~~I~iss 64 (258)
T PRK13318 10 TNTVFGLYE-G-GKLVAHWRISTDSR--------RTADEYGVWLKQ----LLGL---SGLDPEDITGIIISS 64 (258)
T ss_pred CcEEEEEEE-C-CEEEEEEEEeCCCC--------CCHHHHHHHHHH----HHHH---cCCCcccCceEEEEE
Confidence 368999999 3 78887665544321 233445444443 3332 233345799999996
No 139
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=33.41 E-value=5e+02 Score=25.85 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEEeCCCCCCCCCCCCCCceeEecCCCCCCHHHHHHHHHhhhhHHHHHH
Q psy1586 307 TFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDI 386 (431)
Q Consensus 307 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~~G~r~p~~~~~~~g~~~gl~~~~~~~~~~rA~~Egia~~~r~~ 386 (431)
++.|+.++.++ +-+++++++++-.|--|+ .|.. .+.|-..... ... .. ++-.+|=.++.++..
T Consensus 247 ii~~l~~~~~~--s~~~i~~~LNkkSGllGl------Sg~s-----sD~R~l~~~~--~~g-~~-A~lA~~~f~~Ri~ky 309 (396)
T COG0282 247 IILYLMEQEGM--SAEEIDTLLNKKSGLLGL------SGLS-----SDMRDLEEAA--AEG-NE-AKLALDMFVYRIAKY 309 (396)
T ss_pred HHHHHHHhcCC--CHHHHHHHHhhhcccccc------cccc-----chHHHHHHHh--ccC-ch-HHHHHHHHHHHHHHH
Confidence 78899998876 788888887764331111 1211 1122111111 111 12 444556566777777
Q ss_pred HHHHHHhcCCCCceEEEEcCCccC-hHHHHHHh
Q psy1586 387 LEAMKEDCGVALEKLLVDGGMTAN-KYLMQLQA 418 (431)
Q Consensus 387 ~~~l~~~~g~~~~~i~~~GG~~~s-~~~~qi~A 418 (431)
+-.+-..++ .++.|+++||.-.| +..++...
T Consensus 310 Ig~y~a~L~-glDaiVFTaGIGENs~~iR~~v~ 341 (396)
T COG0282 310 IGSYAAALG-GLDALVFTAGIGENSALVRELVC 341 (396)
T ss_pred HHHHHHHhC-CCCEEEEeCccccCcHHHHHHHH
Confidence 766655556 78999999999886 55555544
No 140
>PRK08557 hypothetical protein; Provisional
Probab=33.25 E-value=52 Score=33.15 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=39.1
Q ss_pred ccccceecCcccHHHHHHHHh-hccChhHHHhH----hCCCCCccchHHHHHHHHhcchHHHHhh
Q psy1586 88 LYNAIVWSDVRTKSIVDTYAS-KIKNTTFLTTI----CGLPISTYFSAVKLNWLMDNVDEVKNAI 147 (431)
Q Consensus 88 l~~~i~w~D~R~~~~~~~l~~-~~~~~~~~~~~----tG~~~~~~~~~~kl~wl~~~~p~~~~~~ 147 (431)
+.|+..|.+. +....+.+ .++ -..+|.. .||.+-+......+..+++++|+.|++.
T Consensus 316 i~PI~~Wt~~---dVW~YI~~~~lp-~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~ 376 (417)
T PRK08557 316 VFPILDWNSL---DIWSYIYLNDIL-YNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRW 376 (417)
T ss_pred EEecccCCHH---HHHHHHHHcCCC-CCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHH
Confidence 5788889875 33444443 222 1234444 8898888877888889999999999874
No 141
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=32.52 E-value=72 Score=28.55 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecCC
Q psy1586 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430 (431)
Q Consensus 372 ~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~~ 430 (431)
++-++|-+|-..+..++ +.+++.++++||.+.-+-.-.++..-|+.+|..+..
T Consensus 207 v~PV~eKMAeIv~~hie------~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~ 259 (277)
T COG4820 207 VKPVYEKMAEIVARHIE------GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQH 259 (277)
T ss_pred hhHHHHHHHHHHHHHhc------cCCCcceEEecccccCccHHHHHHHHhccccccCCC
Confidence 46677877777766554 346788999999999888888999999999988764
No 142
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=31.42 E-value=1.7e+02 Score=27.96 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=39.0
Q ss_pred EEEEEeCCCCeEEEEEEeecceec-CCCCc-eeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEec
Q psy1586 4 STIVFAASTSELLTYHKVELETLT-PKEGW-VEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72 (431)
Q Consensus 4 K~~l~d~~~g~~l~~~~~~~~~~~-~~~g~-~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~ 72 (431)
-++|+| .+++++........... ...|. .+.....--+.+...+++++++ +++++.+|.+|+++.
T Consensus 11 sval~~-~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~iav~~ 77 (305)
T TIGR00329 11 GVAIVD-EEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSEIDLIAYTQ 77 (305)
T ss_pred EEEEEE-CCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 467788 35788877665544322 22232 2333444455555556666544 577888999999885
No 143
>PRK09604 UGMP family protein; Validated
Probab=30.86 E-value=1.5e+02 Score=28.81 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=36.5
Q ss_pred EEEEEeCCCCeEEEEEEeec-ceecCCCCc-eeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEec
Q psy1586 4 STIVFAASTSELLTYHKVEL-ETLTPKEGW-VEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72 (431)
Q Consensus 4 K~~l~d~~~g~~l~~~~~~~-~~~~~~~g~-~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~ 72 (431)
-++|+| ++++++....... ....+..|. .+.....--+.+...+++++++ .++++.+|++|++|.
T Consensus 14 sval~~-~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~iavt~ 80 (332)
T PRK09604 14 SVAVVD-DGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIAVTA 80 (332)
T ss_pred EEEEEE-CCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 467888 4557776655332 112122332 1223344455555556666554 467788999999885
No 144
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=1.1e+02 Score=31.71 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHH-HHHhhhcCCceEecC
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLM-QLQADLTGTPVSSSP 429 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~-qi~Advlg~pv~~~~ 429 (431)
+..+++.+|.+...+... +.+.+| ..+|..+||.+.|-.++ +++...++..|-+.+
T Consensus 262 AasaQ~~lE~l~l~~~~~---~~~~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~P 318 (555)
T COG2192 262 AASAQAYLEELVLEMLRY---LREETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQP 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhC--ccceEEccceeeeeeehHhHhhcccCceeEecC
Confidence 344568888888777554 333344 57899999999999999 888888888777654
No 145
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=28.94 E-value=1.4e+02 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=13.5
Q ss_pred CcEEEEEeCCCCeEEEEEEe
Q psy1586 2 SKSTIVFAASTSELLTYHKV 21 (431)
Q Consensus 2 s~K~~l~d~~~g~~l~~~~~ 21 (431)
.++++++| ++|+++...+.
T Consensus 20 ~~~~v~ld-~~G~v~d~~~~ 38 (150)
T PF14639_consen 20 AVFCVVLD-ENGEVLDHLKL 38 (150)
T ss_dssp -EEEEEE--TTS-EEEEEEE
T ss_pred CEEEEEEC-CCCcEEEEEEE
Confidence 46899999 69999987776
No 146
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=28.52 E-value=1.5e+02 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCcc
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTA 409 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~ 409 (431)
..|.+.+-..++-|.++.++..++.++++.+ ...+++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~-~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELK-GGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCCchH
Confidence 4688899999999999999999999988765 4467999999987
No 147
>PHA02754 hypothetical protein; Provisional
Probab=28.44 E-value=1.1e+02 Score=21.17 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEeeCCCCc
Q psy1586 43 LVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGK 86 (431)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d~~~g~ 86 (431)
.+.++++++-..++++|+--++|.+|-.||. -+|.+-+ ++-
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~SGd--kIVVi~a-D~I 55 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITTSGD--KIVVITA-DAI 55 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEecCC--EEEEEEc-ceE
Confidence 4778888888888888887788999877764 4666666 353
No 148
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=98 Score=32.70 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=27.7
Q ss_pred CCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 397 ALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 397 ~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
+++.|.++||.++-|...+.+++.|+++...
T Consensus 309 ~I~~VilvGGstriP~V~~~v~~~f~~~~~~ 339 (579)
T COG0443 309 DIDLVILVGGSTRIPAVQELVKEFFGKEPEK 339 (579)
T ss_pred hCceEEEccceeccHHHHHHHHHHhCccccc
Confidence 5789999999999999999999999966543
No 149
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.77 E-value=1.3e+02 Score=29.35 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=42.8
Q ss_pred EEEEeCCCCeEEEEEEeecceec-CCCC-ceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEE
Q psy1586 5 TIVFAASTSELLTYHKVELETLT-PKEG-WVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78 (431)
Q Consensus 5 ~~l~d~~~g~~l~~~~~~~~~~~-~~~g-~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v 78 (431)
+.|++. ++ +++-....+.... +..| ..|.-...-.+.+..++++++++ ++++.++|++|++|. ++|++
T Consensus 15 vaIv~~-~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA~T~-gPGL~ 84 (342)
T COG0533 15 VAIVDE-EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLEDIDAIAVTA-GPGLG 84 (342)
T ss_pred eEEEec-cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEEEec-CCCch
Confidence 566773 44 5554443332212 2233 24666677788888888888765 577788999999985 45554
No 150
>KOG0101|consensus
Probab=27.50 E-value=1e+02 Score=32.65 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCC
Q psy1586 369 VDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGT 423 (431)
Q Consensus 369 ~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~ 423 (431)
.++++..+|-+. ..+....- -...+..|+++||-++-|.+.+++.|.|+-
T Consensus 311 ~dlf~~~~~~v~----~~L~da~~-dk~~i~~vvlVGGstriPk~~~ll~d~f~~ 360 (620)
T KOG0101|consen 311 ADLFRSTLEPVE----KALKDAKL-DKSDIDEVVLVGGSTRIPKVQKLLEDFFNG 360 (620)
T ss_pred hHHHHHHHHHHH----HHHHhhcc-CccCCceeEEecCcccchHHHHHHHHHhcc
Confidence 456666666555 33333321 234789999999999999999999999974
No 151
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=27.26 E-value=28 Score=32.36 Aligned_cols=34 Identities=15% Similarity=0.414 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhc
Q psy1586 387 LEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT 421 (431)
Q Consensus 387 ~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advl 421 (431)
|..|++ .|+.+++.+..||..|.+.+..+.++||
T Consensus 204 I~TLr~-Wgv~vDEafFLgG~~K~~vL~~~~phIF 237 (264)
T PF06189_consen 204 IRTLRS-WGVRVDEAFFLGGLPKGPVLKAFRPHIF 237 (264)
T ss_pred HHHHHH-cCCcHhHHHHhCCCchhHHHHhhCCCEe
Confidence 667876 8999999999999999999999999885
No 152
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=26.26 E-value=1.7e+02 Score=29.26 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEe
Q psy1586 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427 (431)
Q Consensus 366 ~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~ 427 (431)
.....+++.+..|+...+...+..+++. +.+++.|+.+||.. .-+.|-.+++|+.+
T Consensus 63 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~-~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 63 QSLRGLLRDLRAGLVGLTLGQWRALRKW-AKKGDLIVAVGDIV-----PLLFAWLSGKPYAF 118 (396)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcCCEEEEECcHH-----HHHHHHHcCCCceE
Confidence 4566888999999999999999998874 55789999999999 56667788999877
No 153
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=25.95 E-value=1e+02 Score=29.35 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEEcCCccChHHHHHHhhhcCCceEecC
Q psy1586 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 365 ~~~~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~~~s~~~~qi~Advlg~pv~~~~ 429 (431)
..+.+++.+++++-+...+...++.+....|..++...+.+-|.-.+++..-+|+.+|.+.++++
T Consensus 206 g~~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p 270 (290)
T PF01968_consen 206 GLSVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPP 270 (290)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE----------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccccccccccccccccccccccccccc
Confidence 34578888888888888888887777443466666554444333337888899999998765543
No 154
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=25.22 E-value=42 Score=24.79 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=16.1
Q ss_pred CcHHHHhhcCCCCCCCCccccCC
Q psy1586 194 WEPQLLKFFNIPSQILPQIRSSS 216 (431)
Q Consensus 194 W~~~~l~~~gi~~~~lP~i~~~g 216 (431)
--+++|+.+++..++||.|..+.
T Consensus 19 E~~~lL~~y~i~~~qLP~I~~~D 41 (74)
T PF01191_consen 19 EKKELLKKYNIKPEQLPKILSSD 41 (74)
T ss_dssp HHHHHHHHTT--TTCSSEEETTS
T ss_pred HHHHHHHHhCCChhhCCcccccC
Confidence 34678999999999999885544
No 155
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=25.06 E-value=33 Score=25.40 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=17.5
Q ss_pred HHHHhhcCCCCCCCCccccCC
Q psy1586 196 PQLLKFFNIPSQILPQIRSSS 216 (431)
Q Consensus 196 ~~~l~~~gi~~~~lP~i~~~g 216 (431)
.++|+.++|.+.+||.|..+.
T Consensus 27 ~~vLk~l~i~~~qLPkI~~~D 47 (80)
T COG2012 27 KEVLKELGIEPEQLPKIKASD 47 (80)
T ss_pred HHHHHHhCCCHHHCCcccccC
Confidence 468999999999999986544
No 156
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=24.84 E-value=1.6e+02 Score=26.84 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=40.5
Q ss_pred CCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEEeeC
Q psy1586 29 KEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDS 82 (431)
Q Consensus 29 ~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~~d~ 82 (431)
.-|...+|++++.+.+...+..+...... +.....|+.|.++++|.-.|-+|.
T Consensus 175 ~iGk~sf~~e~L~eNi~a~l~~i~~~~p~-~~kg~~ik~v~vstTMGP~v~v~~ 227 (228)
T COG0081 175 PIGKVSFDDEKLAENIEALLNAIVKAKPA-GAKGQYIKSVYVSTTMGPGVKVDL 227 (228)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhCcC-CcccceEeEEEEecCCCCCEEecc
Confidence 35778899999999999988887776542 223568999999998876666653
No 157
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=24.76 E-value=1.6e+02 Score=30.63 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=39.1
Q ss_pred EEEEEeCCCCeEEEEEEeecceecCCCCc-eeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEec
Q psy1586 4 STIVFAASTSELLTYHKVELETLTPKEGW-VEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72 (431)
Q Consensus 4 K~~l~d~~~g~~l~~~~~~~~~~~~~~g~-~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~ 72 (431)
-++|++ .+|++++.....+ ..+..|. .+.....-.+.+...+++++++ ++++..+|++|++|.
T Consensus 14 s~a~~~-~~~~~~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav~~ 77 (535)
T PRK09605 14 SAGIVD-SDGDVLFNESDPY--KPPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPEDIDLVAFSQ 77 (535)
T ss_pred EEEEEe-CCCcEEEEEEeec--cCCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhhCCEEEECC
Confidence 467888 3678887766542 2233342 1222344556666666777654 577788999999994
No 158
>PRK14878 UGMP family protein; Provisional
Probab=24.03 E-value=2.3e+02 Score=27.34 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=36.5
Q ss_pred EEEEEeCCCCeEEEEEEeecceecCCCCcee-eCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecc
Q psy1586 4 STIVFAASTSELLTYHKVELETLTPKEGWVE-QDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73 (431)
Q Consensus 4 K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~ 73 (431)
-++|+| ++++++.....+ ..+..|... .-....-+.+...+++++++ +++++.+|++|++|.-
T Consensus 11 s~al~~--~~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~did~Iavt~g 74 (323)
T PRK14878 11 GVGIVK--EDKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIEDIDAVAVSQG 74 (323)
T ss_pred EEEEEE--CCEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEecC
Confidence 367787 356777665544 223344332 22233344455555555544 5778899999999853
No 159
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=23.63 E-value=2.1e+02 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCeEEEEEEeecceecCCCCceeeCHHHHHHHHHHHHHHHHHhhhhcCCCCCCeeEEEEecccceEEE
Q psy1586 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIV 79 (431)
Q Consensus 1 ~s~K~~l~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~~I~is~~~~~~v~ 79 (431)
+++|++|.+ +++.++...... .+| .|. ..++++++++++ +....+|.++++||.+...+-
T Consensus 145 TtTK~VLm~-d~~~I~~~~~~~------t~g----~p~-----~~~~l~~~le~l---~~~~~~I~~~~~TGYGR~~v~ 204 (396)
T COG1924 145 TTTKAVLME-DGKEILYGFYVS------TKG----RPI-----AEKALKEALEEL---GEKLEEILGLGVTGYGRNLVG 204 (396)
T ss_pred cceeEEEEe-CCCeEEEEEEEc------CCC----Chh-----HHHHHHHHHHHc---ccChheeeeeeeecccHHHhh
Confidence 367999999 355444433322 222 111 234444454444 333478999999999987664
No 160
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.57 E-value=4.6e+02 Score=26.12 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=34.7
Q ss_pred HhhhhHHHHHHHHHHHHhcCCCCceEEEEcCC-ccChHHHHHHhhhcCCceEecC
Q psy1586 376 LEAVCFQTRDILEAMKEDCGVALEKLLVDGGM-TANKYLMQLQADLTGTPVSSSP 429 (431)
Q Consensus 376 ~Egia~~~r~~~~~l~~~~g~~~~~i~~~GG~-~~s~~~~qi~Advlg~pv~~~~ 429 (431)
+.-||+.+...=+++.++.....+-++|.||- |.|..=+.-+|.-.|.|....+
T Consensus 267 ~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie 321 (387)
T PRK13371 267 FNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHID 321 (387)
T ss_pred cCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEEC
Confidence 34677777777777776533357889999998 4454433334555677766543
No 161
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=21.97 E-value=1.9e+02 Score=21.77 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=25.8
Q ss_pred CCCeEEEeCC-CCCCCCCCCCCCceeEecCCCCCC-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCceEEEE
Q psy1586 334 HTDVVFVPAF-SGLYAPYWQRDARSIICGLTDETS-KVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVD 404 (431)
Q Consensus 334 ~~~l~~~P~~-~G~r~p~~~~~~~g~~~gl~~~~~-~~~~~rA~~Egia~~~r~~~~~l~~~~g~~~~~i~~~ 404 (431)
++.+++.|.+ ...|++. -.++-++.... -.+.-++++ +.+.+.|.+..|++++.|.++
T Consensus 11 ~~~~~~~~~ylg~~Rs~~------~v~I~It~~~gRs~e~K~~ly-------~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 11 PDEFIYDPTYLGIDRSDD------FVIIQITSGAGRSTEQKKALY-------RALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp GGGEEE-TTTS--TS-TT-------EEEEEEECS---HHHHHHHH-------HHHHHHHHHHH---GGGEEEE
T ss_pred cccEEECCccCCCCCCCC------EEEEEEEECCCCCHHHHHHHH-------HHHHHHHHHHcCCCHHHEEEE
Confidence 3456677744 4455532 24555555432 234445554 344555655568888877654
No 162
>PRK03670 competence damage-inducible protein A; Provisional
Probab=21.56 E-value=1.3e+02 Score=28.01 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.5
Q ss_pred CceEEEEcCC--ccChHHHHHHhhhcCCceEec
Q psy1586 398 LEKLLVDGGM--TANKYLMQLQADLTGTPVSSS 428 (431)
Q Consensus 398 ~~~i~~~GG~--~~s~~~~qi~Advlg~pv~~~ 428 (431)
.+-|+++||. +..+.-.+.+|.++|+|+..-
T Consensus 61 ~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~ 93 (252)
T PRK03670 61 PEVLVISGGLGPTHDDVTMLAVAEALGRELVLC 93 (252)
T ss_pred CCEEEECCCccCCCCCchHHHHHHHhCCCCcCC
Confidence 4668888864 668999999999999998753
No 163
>PRK05905 hypothetical protein; Provisional
Probab=20.71 E-value=1.5e+02 Score=27.74 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=32.1
Q ss_pred EEcccccchhhHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEE
Q psy1586 296 ALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFV 340 (431)
Q Consensus 296 ~~~~~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (431)
.+.|+++++..++.++-+.++. +.+++.+++.++ |++-++|+
T Consensus 100 GLGggSSDAAa~L~~Ln~l~~l--s~~~L~~ia~~l-GADVPFfl 141 (258)
T PRK05905 100 GLGSGSSNAAVLMKWILEFEGI--NEINYKDVVNKL-GSDIPFFL 141 (258)
T ss_pred CCCCCchHHHHHHHHHHHHhCC--CHHHHHHHHHHh-CCCcceEE
Confidence 4557888999999999988874 677888887765 66666665
Done!