RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1586
(431 letters)
>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan glycerol kinases (GKs), coded by X
chromosome-linked GK genes, and glycerol kinase
(GK)-like proteins, coded by autosomal testis-specific
GK-like genes (GK-like genes, GK1 and GK3). Sequence
comparison shows that metazoan GKs and GK-like proteins
in this family are closely related to the bacterial GKs,
which catalyze the Mg-ATP dependent phosphorylation of
glycerol to yield glycerol 3-phosphate (G3P). The
metazoan GKs do have GK enzymatic activity. However, the
GK-like metazoan proteins do not exhibit GK activity and
their biological functions are not yet clear. Some of
them lack important functional residues involved in the
binding of ADP and Mg2+, which may result in the loss of
GK catalytic function. Others that have conserved
catalytic residues have lost their GK activity as well;
the reason remains unclear. It has been suggested the
conserved catalytic residues might facilitate them
performing a distinct function. GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 504
Score = 739 bits (1910), Expect = 0.0
Identities = 284/427 (66%), Positives = 343/427 (80%), Gaps = 2/427 (0%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
+VF A T+ELL+ H+VE++ + PKEGWVEQDP IL+ V ECIEK L +L+I+ +DI
Sbjct: 16 LVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEKTCKKLKELNIDVSDI 75
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKI--KNTTFLTTICGLP 123
AIGITNQRETT+VWD TG+PLYNAIVW D+RT+S VD +KI KN +L +ICGLP
Sbjct: 76 KAIGITNQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDKLLAKIPDKNKNYLKSICGLP 135
Query: 124 ISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASR 183
ISTYFSAVKL WL+DNV EV+ A+++ +CLFGTVDSWLIWNLTGG +GG+HITDVTNASR
Sbjct: 136 ISTYFSAVKLRWLLDNVPEVRKAVEEKRCLFGTVDSWLIWNLTGGPNGGVHITDVTNASR 195
Query: 184 TLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQGVPISGILGDQQSAL 243
T+LMN+ TL+W+P+L KFF IP +ILP+IRSSSEIYG +K+GPL+G+PISGILGDQQ+AL
Sbjct: 196 TMLMNIETLEWDPELCKFFGIPMEILPEIRSSSEIYGYIKEGPLEGIPISGILGDQQAAL 255
Query: 244 VGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAV 303
VGQ C + GQAKNTYGTGCFLLYNTGT V S+ GLLTTVAY+ G P YALEGS+A+
Sbjct: 256 VGQMCFKKGQAKNTYGTGCFLLYNTGTKPVFSTHGLLTTVAYKLGPDKPTIYALEGSVAI 315
Query: 304 AGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLT 363
AG +WLRDNL II ++IE L + + DV FVPAFSGLYAPYW++DAR IICGLT
Sbjct: 316 AGAAIRWLRDNLGIIKTSSDIEKLASEVGTSGDVYFVPAFSGLYAPYWRKDARGIICGLT 375
Query: 364 DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGT 423
T+K I +AALEAVCFQTR+ILEAM +DCG+ L KL VDGGMT+N LMQLQAD+ G
Sbjct: 376 QFTTKNHIARAALEAVCFQTREILEAMNKDCGIPLSKLQVDGGMTSNNLLMQLQADILGI 435
Query: 424 PVSSSPI 430
PV +
Sbjct: 436 PVVRPSM 442
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 644 bits (1664), Expect = 0.0
Identities = 239/427 (55%), Positives = 295/427 (69%), Gaps = 11/427 (2%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
I+F E+++ H+VE E + P+ GWVE DP I V +CIE+ + L I+P I
Sbjct: 15 IIFD-RDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEALK---KLRISPEQI 70
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPIS 125
AIGITNQRETT+ WD TGKPLYNAIVW D RT IV+ + N + GLPIS
Sbjct: 71 KAIGITNQRETTVAWDKETGKPLYNAIVWQDTRTSEIVEELKAD-GNADYFREKTGLPIS 129
Query: 126 TYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTL 185
YFSA+KL WL++NV EV+ AI++ LFGT+D+WLIWNLTGG +H+TDVTNASRT+
Sbjct: 130 PYFSALKLRWLLENVPEVREAIEEGTLLFGTIDTWLIWNLTGGK---VHVTDVTNASRTM 186
Query: 186 LMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPL--QGVPISGILGDQQSAL 243
LMNL TLQW+ +LL+ F IPS+ LP+IRSSSE+YG +G L +G+PI+G LGDQQ+AL
Sbjct: 187 LMNLHTLQWDEELLELFGIPSECLPEIRSSSEVYGYTNEGGLLGEGIPIAGCLGDQQAAL 246
Query: 244 VGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAV 303
GQ C +AG AK TYGTGCFLL NTG V S GLLTT+AY+ G YALEGSIAV
Sbjct: 247 FGQGCFEAGDAKCTYGTGCFLLMNTGEKPVISEHGLLTTIAYKLG-PGKPVYALEGSIAV 305
Query: 304 AGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLT 363
AG +WLRDNL II+ +E+E L V FVPAFSGL+APYW DAR I GLT
Sbjct: 306 AGSAVQWLRDNLKIISSASEVEELAASVEDTGGVYFVPAFSGLFAPYWDPDARGTILGLT 365
Query: 364 DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGT 423
T++ IV+AALEA+ FQTRD+L+AM++D G+ L L VDGG+T N LMQ QAD+ G
Sbjct: 366 RGTTRAHIVRAALEAIAFQTRDVLDAMEKDSGIKLSVLRVDGGLTKNNLLMQFQADILGV 425
Query: 424 PVSSSPI 430
PV
Sbjct: 426 PVERPET 432
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 638 bits (1647), Expect = 0.0
Identities = 233/421 (55%), Positives = 285/421 (67%), Gaps = 10/421 (2%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
IVF ++ H+ E + PK GWVE DPM I V CI + L I P+DI
Sbjct: 16 IVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEA---LAKAGIKPDDI 71
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPIS 125
AIGITNQRETT+VWD TGKPLYNAIVW D RT SI + ++ F+ GLP+
Sbjct: 72 AAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGE-FIREKTGLPLD 130
Query: 126 TYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTL 185
YFSA KL WL+DNV V+ A + + LFGT+D+WLIWNLTGG +H+TDVTNASRT+
Sbjct: 131 PYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGG---KVHVTDVTNASRTM 187
Query: 186 LMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYG-CLKDGPLQGVPISGILGDQQSALV 244
L N+ TL W+ +LL+ F IP +ILP++RSSSE+YG +PI+G+LGDQQ+AL
Sbjct: 188 LFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEIPITGVLGDQQAALF 247
Query: 245 GQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVA 304
GQ+C + GQAKNTYGTGCFLL NTG V S GLLTTVAYQ G + P+ YALEGS+ VA
Sbjct: 248 GQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPV-YALEGSVFVA 306
Query: 305 GQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTD 364
G +WLRDNL +I E E+L + + V FVPAF+GL APYW DAR I GLT
Sbjct: 307 GAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTR 366
Query: 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTP 424
T+K I +AALEA+ FQTRD+LEAM++D GV + KL VDGGMT N LMQ QAD+ G P
Sbjct: 367 GTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVP 426
Query: 425 V 425
V
Sbjct: 427 V 427
>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
Length = 504
Score = 611 bits (1578), Expect = 0.0
Identities = 223/415 (53%), Positives = 287/415 (69%), Gaps = 7/415 (1%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
+++ H++ E +TP GW+E DP IL V +C+ + + L + + I AIGITNQ
Sbjct: 24 NVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPS-FKIKAIGITNQ 82
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
RET + WD TGKPLYNAIVW D RT IV+ K + F I GLPISTYFSA K+
Sbjct: 83 RETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKI 142
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W+++NV VK+A+K+ LFGT+D+WLIWNLTGG H+TDVTNASRT LMN++TL+
Sbjct: 143 RWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLK 199
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYG---CLKDGPLQGVPISGILGDQQSALVGQSCLQ 250
W+ +LL F IP + LP+I+SSSE +G L+GVPI+G +GDQQ+AL+G C +
Sbjct: 200 WDEELLNKFGIPKETLPEIKSSSENFGTISGEAVPLLEGVPITGCIGDQQAALIGHGCFE 259
Query: 251 AGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKW 310
G AKNTYGTGCFLL NTGT IV S GLLTTV YQ G P YALEGSIAVAG +W
Sbjct: 260 KGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEW 319
Query: 311 LRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVD 370
LRDN+ +I+ +EIE L + VVFVPAFSGL+APYW+ DAR I G+T +T++
Sbjct: 320 LRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAH 379
Query: 371 IVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
IV+AALEA+ QT D++E+M++D G+ L L VDGG+T NK LMQ QAD+ G +
Sbjct: 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDI 434
>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup is composed of mostly bacterial
and archaeal glycerol kinases (GK), including the well
characterized proteins from Escherichia coli (EcGK),
Thermococcus kodakaraensis (TkGK), and Enterococcus
casseliflavus (EnGK). GKs contain two large domains
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The high affinity ATP binding
site of EcGK is created only by a substrate-induced
conformational change, which is initiated by
protein-protein interactions through complex formation
with enzyme IIAGlc (also known as IIIGlc), the
glucose-specific phosphocarrier protein of the
phosphotransferase system (PTS). EcGK exists in a
dimer-tetramer equilibrium. IIAGlc binds to both EcGK
dimer and tetramer, and inhibits the uptake and
subsequent metabolism of glycerol and maltose. Another
well-known allosteric regulator of EcGK is fructose
1,6-bisphosphate (FBP), which binds to the EcGK tetramer
and plays an essential role in the stabilization of the
inactive tetrameric form. EcGK requires Mg2+ for its
enzymatic activity. Members in this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 486
Score = 568 bits (1467), Expect = 0.0
Identities = 206/426 (48%), Positives = 270/426 (63%), Gaps = 21/426 (4%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
I+F ++ + E + PK GWVE DP I L I +DI
Sbjct: 15 ILFDHD-GNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAV---AREALAKAGIRASDI 70
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDT-----YASKIKNTTFLTTIC 120
AIGITNQRETT+VWD TGKP+YNAIVW D RT I + + I+ T
Sbjct: 71 AAIGITNQRETTVVWDRETGKPVYNAIVWQDRRTADICEELKAEGHEEMIREKT------ 124
Query: 121 GLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTN 180
GL + YFSA K+ W++DNV + + + FGT+DSWLIW LTGG +H TDVTN
Sbjct: 125 GLVLDPYFSATKIRWILDNVPGARERAERGELAFGTIDSWLIWKLTGG---KVHATDVTN 181
Query: 181 ASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYG-CLKDGPLQGVPISGILGDQ 239
ASRT+L N+ TL+W+ +LL+ F IP+ +LP+++ SSE++G D +PI+GI GDQ
Sbjct: 182 ASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPSSEVFGYTDPDLLGAEIPIAGIAGDQ 241
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEG 299
Q+AL GQ+C + G AKNTYGTGCF+L NTG V S GLLTT+A+Q G + +TYALEG
Sbjct: 242 QAALFGQACFEPGMAKNTYGTGCFMLMNTGEKPVRSKNGLLTTIAWQLGGK--VTYALEG 299
Query: 300 SIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSII 359
SI +AG +WLRD L +I E E+L + + V FVPAF+GL APYW DAR I
Sbjct: 300 SIFIAGAAVQWLRDGLGLIESAAETEALARSVPDNGGVYFVPAFTGLGAPYWDPDARGAI 359
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT T++ I +AALE++ +QTRD+LEAM+ D G+ L++L VDGG +AN +LMQ QAD
Sbjct: 360 FGLTRGTTRAHIARAALESIAYQTRDLLEAMEADSGIPLKELRVDGGASANDFLMQFQAD 419
Query: 420 LTGTPV 425
+ G PV
Sbjct: 420 ILGVPV 425
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 567 bits (1463), Expect = 0.0
Identities = 203/415 (48%), Positives = 265/415 (63%), Gaps = 21/415 (5%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78
+ E + P+ GWVE DP I I + L I+P+ I AIGITNQRETT+
Sbjct: 32 AQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA---LAKAGISPDQIAAIGITNQRETTV 88
Query: 79 VWDSTTGKPLYNAIVWSDVRTKSIVDT-----YASKIKNTTFLTTICGLPISTYFSAVKL 133
VWD TG+P+YNAIVW D RT I + Y I+ T GL I YFS K+
Sbjct: 89 VWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKT------GLVIDPYFSGTKI 142
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W++DNV+ + + + LFGT+D+WL+W LTGG +H+TD TNASRT+L N+ TL
Sbjct: 143 KWILDNVEGARERAEKGELLFGTIDTWLVWKLTGG---KVHVTDYTNASRTMLFNIHTLD 199
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCLKD-GPLQG-VPISGILGDQQSALVGQSCLQA 251
W+ +LL+ +IP +LP++R SSE+YG G G VPI+GI GDQQ+AL GQ C +
Sbjct: 200 WDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVPIAGIAGDQQAALFGQLCFEP 259
Query: 252 GQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWL 311
G AKNTYGTGCF+L NTG V S GLLTT+A+ + YALEGSI VAG +WL
Sbjct: 260 GMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDG--KVVYALEGSIFVAGSAIQWL 317
Query: 312 RDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDI 371
RD L II+D ++ E+L +K + V VPAF+GL APYW DAR I GLT T+K I
Sbjct: 318 RDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI 377
Query: 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVS 426
++A LE++ +QTRD+L+AM+ D G+ L++L VDGG AN +LMQ QAD+ G PV
Sbjct: 378 IRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVE 432
>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp. glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a small group of
bacterial glycerol kinases (GK) with similarity to
Cellulomonas sp. glycerol kinase (CsGK). CsGK might
exist as a dimer. Its monomer is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The regulation
of the catalytic activity of this group has not yet been
examined. Members in this subgroup belong to the FGGY
family of carbohydrate kinases.
Length = 495
Score = 560 bits (1445), Expect = 0.0
Identities = 229/426 (53%), Positives = 285/426 (66%), Gaps = 7/426 (1%)
Query: 2 SKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN 61
S IVF +++ + E + P+ GWVE DP I I G L +
Sbjct: 11 STRCIVFDHH-GRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVIS---GALAKAGLT 66
Query: 62 PNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICG 121
P DI A+GITNQRETT+VWD TG+P+YNAIVW D RT I A+ F G
Sbjct: 67 PEDIAAVGITNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELAADEGQQRFRAR-TG 125
Query: 122 LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNA 181
LP++TYFS K+ W++DNV + + LFGT+D+WL+WNLTGG GG+H+TDVTNA
Sbjct: 126 LPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNLTGGPRGGVHVTDVTNA 185
Query: 182 SRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL-KDGPLQGVPISGILGDQQ 240
SRT+LM+L TL W+P+LL F IP +LP+IR SSE+YG + G L GVPI+G+LGDQQ
Sbjct: 186 SRTMLMDLETLDWDPELLAAFGIPRSMLPEIRPSSEVYGTVRGRGILAGVPIAGVLGDQQ 245
Query: 241 SALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGS 300
+AL GQ+C +AG+AKNTYGTGCFLL NTGT V S GLLTTVAYQFG + + YALEGS
Sbjct: 246 AALFGQTCFEAGEAKNTYGTGCFLLLNTGTEPVRSKHGLLTTVAYQFGGQPAV-YALEGS 304
Query: 301 IAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIIC 360
IAV G +WLRDNL +I EIE+L + + V FVPAFSGL+APYW+ DAR +I
Sbjct: 305 IAVTGSLVQWLRDNLGLIKTAAEIETLARTVEDNGGVYFVPAFSGLFAPYWRSDARGVIV 364
Query: 361 GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420
GLT +K I +A LEA FQTR++++AM D GVALE L VDGGM AN+ LMQ QAD+
Sbjct: 365 GLTRYVNKGHIARAVLEATAFQTREVVDAMNADSGVALESLRVDGGMVANELLMQFQADI 424
Query: 421 TGTPVS 426
G PV
Sbjct: 425 LGVPVV 430
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 556 bits (1434), Expect = 0.0
Identities = 239/416 (57%), Positives = 282/416 (67%), Gaps = 8/416 (1%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78
H++E + P GW E DP I+ V +CI + L + D+ IGITNQRETT+
Sbjct: 29 HQIEFSQIYPHPGWHEHDPEEIVSSVVQCIASALKSLETSGFSKYDVKVIGITNQRETTV 88
Query: 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASK-IKNTTFLTTICGLPISTYFSAVKLNWLM 137
VWD TGKPLYNAIVW+D RT S V SK K L ICGLP+STYFS+VKL W++
Sbjct: 89 VWDRETGKPLYNAIVWNDTRTTSTVRELESKLKKGAEALREICGLPLSTYFSSVKLRWML 148
Query: 138 DNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQ 197
DNV EVK A D FGTVDSWLI+NLTGG +H+TDVTNASRT+ MNL TL+++ +
Sbjct: 149 DNVPEVKKAYDDGDLAFGTVDSWLIYNLTGGPKTKVHVTDVTNASRTMFMNLATLKYDQK 208
Query: 198 LLKFFNI-PSQILPQIRSSSEIYGCLKDGPLQGVPISGILGDQQSALVGQSCLQAGQAKN 256
LL FF I ILP+I SSSE+YG + GPL+GVPI+G LGDQ +ALVGQ G+AKN
Sbjct: 209 LLDFFGIDKKIILPEIVSSSEVYGNIAYGPLEGVPIAGCLGDQSAALVGQKAFTPGEAKN 268
Query: 257 TYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLN 316
TYGTGCFLLYNTG V S GLLTTVAYQFG A YALEGSIAVAG KWLRDNL
Sbjct: 269 TYGTGCFLLYNTGEKPVISKHGLLTTVAYQFGPGAKPVYALEGSIAVAGSAVKWLRDNLG 328
Query: 317 II---ADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVK 373
+I D+ E+ S V S VVFV AFSGL+APYW DAR I G+T T+K I +
Sbjct: 329 LISKAEDIGELASQVPDSGG---VVFVTAFSGLFAPYWDDDARGTIFGITQYTTKSHIAR 385
Query: 374 AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429
AALEAVCFQTR IL+AM +D G L+ L VDGGM+ + MQ+QAD+ G PV
Sbjct: 386 AALEAVCFQTRAILDAMSKDSGSPLKALAVDGGMSNSDVAMQIQADILGIPVERPE 441
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 555 bits (1433), Expect = 0.0
Identities = 229/416 (55%), Positives = 287/416 (68%), Gaps = 11/416 (2%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDIN-PNDIVAIGITNQRETT 77
H+VE + P+ GWVE DPM IL V CI K + N + + AIGITNQRETT
Sbjct: 27 HQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGITNQRETT 86
Query: 78 IVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIK--NTTFLTTICGLPISTYFSAVKLNW 135
+ W +TG+PLYNAIVW D RT SI ++ F+ T CGLPISTYFSA KL W
Sbjct: 87 VAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVET-CGLPISTYFSATKLLW 145
Query: 136 LMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWE 195
L++NVD VK A+K LFGT+DSWLIWNLTGG GG+H+TDVTNASRT+LMNL+TL W+
Sbjct: 146 LLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWD 205
Query: 196 PQLLKFFNIPSQILPQIRSSSEIYGCL-KDGPLQGVPISGILGDQQSALVGQSCLQAGQA 254
L+ IP++ILP+I S+SE+ G + K PL GVPI+G LGDQ +A++GQ C + G+A
Sbjct: 206 KPTLEALGIPAEILPKIVSNSEVIGTIAKGWPLAGVPIAGCLGDQHAAMLGQRC-RPGEA 264
Query: 255 KNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDN 314
K+TYGTGCF+L NTG +V S GLLTTVAY+ G AP YALEGS+A+AG +WLRDN
Sbjct: 265 KSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDN 324
Query: 315 LNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKA 374
L II +EIE+L V FVPAFSGL+AP W+ DAR + G+T T+K I +A
Sbjct: 325 LGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARA 384
Query: 375 ALEAVCFQTRDILEAMKEDCG-----VALEKLLVDGGMTANKYLMQLQADLTGTPV 425
LE++CFQ +D+L+AM++D G L L VDGG TAN LMQ+QADL G+PV
Sbjct: 385 VLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPV 440
>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 551 bits (1423), Expect = 0.0
Identities = 205/413 (49%), Positives = 267/413 (64%), Gaps = 20/413 (4%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78
+ E + P+ GWVE DP+ I V +++ L I P +I AIGITNQRETT+
Sbjct: 32 AQREFTQIYPQPGWVEHDPLEIWASVRSVLKEA---LAKAGIKPGEIAAIGITNQRETTV 88
Query: 79 VWDSTTGKPLYNAIVWSDVRTKSIV-----DTYASKIKNTTFLTTICGLPISTYFSAVKL 133
VWD TGKP+YNAIVW D RT I D Y +I+ T GL + YFSA K+
Sbjct: 89 VWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKT------GLVLDPYFSATKI 142
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W++DNV + + + LFGT+D+WLIW LTGG +H+TD +NASRT+L N+ +L+
Sbjct: 143 KWILDNVPGARERAEKGELLFGTIDTWLIWKLTGG---KVHVTDYSNASRTMLFNIHSLE 199
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPL-QGVPISGILGDQQSALVGQSCLQAG 252
W+ +LL+ IP +LP++R SSEIYG G L VPI+G+ GDQQ+AL GQ C + G
Sbjct: 200 WDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAEVPITGVAGDQQAALFGQGCFEPG 259
Query: 253 QAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLR 312
AKNTYGTGCFLL NTG V S GLLTT+A+ + +TYALEGSI VAG +WLR
Sbjct: 260 MAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGK--VTYALEGSIFVAGAAVQWLR 317
Query: 313 DNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIV 372
D L +I D ++ E L + + V FVPAF+GL APYW DAR I GLT T+K I
Sbjct: 318 DGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIA 377
Query: 373 KAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
+A LE++ +QTRD+LEAM++D G+ L +L VDGG + N +LMQ QAD+ G PV
Sbjct: 378 RATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPV 430
>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup includes Arabidopsis NHO1 (also known as
NONHOST1, or noh-host resistant 1) and other putative
plant glycerol kinases, which share strong homology with
glycerol kinases from bacteria, fungi, and animals.
Nonhost resistance of plants refers to the phenomenon
observed when all members of a plant species are
typically resistant to a specific parasite. NHO1 is
required for nonspecific resistance to nonhost
Pseudomonas bacteria, it is also required for resistance
to the fungal pathogen Botrytis cinerea. This subgroup
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 503
Score = 472 bits (1216), Expect = e-164
Identities = 222/421 (52%), Positives = 290/421 (68%), Gaps = 17/421 (4%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCV--GYLVDLDINPNDIVAIGITNQRET 76
H+VE + P+ GWVE DPM IL V++C+E + LD+ + AIGITNQRET
Sbjct: 27 HQVEFTQIYPQAGWVEHDPMEILETVKKCMEGALAKAKAKGLDVLDG-LKAIGITNQRET 85
Query: 77 TIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKN--TTFLTTICGLPISTYFSAVKLN 134
T+VW +TG PLYNAIVW D RT SI ++ F+ T CGLPISTYFSA KL
Sbjct: 86 TVVWSRSTGLPLYNAIVWMDARTSSICRRLEKELPEGGRHFVET-CGLPISTYFSATKLL 144
Query: 135 WLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDG--GLHITDVTNASRTLLMNLRTL 192
WLM++VDEVK A+K LFGT+D+WLIWNLTGG++G G+H+TD TNA+RT+LM+L+TL
Sbjct: 145 WLMEHVDEVKAAVKSGDALFGTIDTWLIWNLTGGINGEEGVHVTDCTNAARTMLMDLKTL 204
Query: 193 QWEPQLLKFFNIPSQILPQIRSSSEIYG-CLKDGPLQGVPISGILGDQQSALVGQSCLQA 251
QW LK IP ILP+I S+ E+ G + P G+ ++G LGDQ +A++GQ C +
Sbjct: 205 QWHEPTLKDLGIPRSILPKIISNVEVIGEISEGWPFAGIQLAGCLGDQHAAMLGQQC-RK 263
Query: 252 GQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWL 311
G+AK+TYGTGCF+L NTG I+ S+ GLLTT+AY+ G AP YALEGSIA+AG +WL
Sbjct: 264 GEAKSTYGTGCFILLNTGEQIIPSNHGLLTTIAYKLGPDAPTNYALEGSIAIAGAAVQWL 323
Query: 312 RDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDI 371
RD+L II +EIESL + ++ V FVPAF+GL+AP+W+ DAR + G+T T+K I
Sbjct: 324 RDSLGIIKSASEIESLAKTVNNTGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHI 383
Query: 372 VKAALEAVCFQTRDILEAMKEDCG------VALEKLL-VDGGMTANKYLMQLQADLTGTP 424
+A LE++CFQ +++L +MK D G V E LL VDGG T N LMQ+QADL G+P
Sbjct: 384 ARAVLESMCFQVKEVLTSMKADAGNIEANTVGGEFLLRVDGGATVNNLLMQIQADLMGSP 443
Query: 425 V 425
V
Sbjct: 444 V 444
>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the
glycerol kinases subfamily of the FGGY family of
carbohydrate kinases. This subgroup contains
uncharacterized bacterial proteins belonging to the
glycerol kinase subfamily of the FGGY family of
carbohydrate kinases. The glycerol kinase subfamily
includes glycerol kinases (GK; EC 2.7.1.30), and
glycerol kinase-like proteins from all three kingdoms of
living organisms. Glycerol is an important intermediate
of energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Under different conditions, GKs from
different species may exist in different oligomeric
states. The monomer of GKs is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Length = 487
Score = 442 bits (1140), Expect = e-153
Identities = 181/410 (44%), Positives = 249/410 (60%), Gaps = 21/410 (5%)
Query: 28 PKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKP 87
P+ GWVE DP I + ++ + + I+P +I +GITNQRETT+ WD TGKP
Sbjct: 36 PENGWVEHDPEEIYENTLQAVKDLLE---EFGIDPAEIEGLGITNQRETTVAWDKRTGKP 92
Query: 88 LYNAIVWSDVRTKSIVDT-----YASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDE 142
LYNAIVW R K+I + YA IK T GL I YFSA K+ WL++NV+
Sbjct: 93 LYNAIVWQCQRGKAICERLKEEGYAELIKQKT------GLKIDPYFSASKMAWLLENVEG 146
Query: 143 VKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFF 202
V+ A FGT+DSWLI+ LT +G TD +NASRT L N+ TL W+ +L + F
Sbjct: 147 VREAASKGDLAFGTIDSWLIYKLT---NGKSFKTDYSNASRTQLFNIHTLDWDEELCELF 203
Query: 203 NIPSQILPQIRSSSEIYGCLK-DGPLQG-VPISGILGDQQSALVGQSCLQAGQAKNTYGT 260
IP +ILP++ S ++G +G L +PI G+LGD +AL GQ C + G K TYGT
Sbjct: 204 GIPRKILPEVLDSDSVFGYTDLNGILPHPIPIHGVLGDSHAALFGQGCFEPGMIKVTYGT 263
Query: 261 GCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIAD 320
G ++ N G V S GL+T++A+ G + TY LEG+I G T WL+D L +I D
Sbjct: 264 GSSVMMNIGEKPVLSDHGLVTSLAWSVGGKV--TYVLEGNINYTGATITWLKDKLGLIQD 321
Query: 321 LNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVC 380
E E L ++ + V VPAF+GL APYW+ DA++ I G+T T K ++V+AALE++
Sbjct: 322 PAETEELALSANPNDGVYLVPAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVRAALESIA 381
Query: 381 FQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430
+Q D+++AM+ED G+ + +L VDGG T N+YLMQ QAD+ PV S I
Sbjct: 382 YQINDVIDAMEEDSGIEISELRVDGGPTRNRYLMQFQADILNAPVKVSNI 431
>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
putative bacterial glycerol kinases (GK), which may be
coded by the GK-like gene, GK2. Sequence comparison
shows members in this CD are homologs of Escherichia
coli GK. They retain all functionally important
residues, and may catalyze the Mg-ATP dependent
phosphorylation of glycerol to yield glycerol
3-phosphate (G3P). GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 484
Score = 356 bits (916), Expect = e-119
Identities = 167/416 (40%), Positives = 230/416 (55%), Gaps = 27/416 (6%)
Query: 23 LETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDS 82
+ P+ GWVEQD I V++ I C+ ++ ++ AI I+NQRE+ ++WD
Sbjct: 31 VGIQYPQPGWVEQDAEAIWAAVQQAIADCLAGVLAAEV-----AAIAISNQRESVVIWDR 85
Query: 83 TTGKPLYNAIVWSDVRTKSIVDTYASK-----IKNTTFLTTICGLPISTYFSAVKLNWLM 137
TG PL + W RT + ++ + T GLPI FSA K+ WL+
Sbjct: 86 QTGAPLGPVLSWQCRRTAAACAALRAEGHEPMVAART------GLPIDPMFSASKMRWLL 139
Query: 138 DNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQ 197
D VD+ + GTVDSWL+WNLTGG + TD +NA+RT L++L QW+PQ
Sbjct: 140 DRVDDGPARAAQGRLCLGTVDSWLLWNLTGG---AVFATDASNAARTQLLDLHGGQWDPQ 196
Query: 198 LLKFFNIPSQILPQIRSSSEIYGCLKDGPL--QGVPISGILGDQQSALVGQSCLQAGQAK 255
LL F IP LP + +S+ +G + GVPI ++GD +AL G G+ K
Sbjct: 197 LLDLFGIPRAALPDVLASAGDFGHTRGLGGLPDGVPILAMIGDSHAALFGHGAFAPGEVK 256
Query: 256 NTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNL 315
TYGTG ++ AI S GL TT+A+ G TYALEG+I V G W+ D L
Sbjct: 257 ATYGTGSSVMTPLRQAIA-PSHGLSTTIAWHDGGE--PTYALEGNITVTGAAVAWMADLL 313
Query: 316 NIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAA 375
+ D + L +S + V FVPA +GL AP+W RDAR +I GLT T + + +AA
Sbjct: 314 GL-PDPAALSELAATASDNGGVYFVPALTGLGAPWWDRDARGLISGLTLGTGRAHLARAA 372
Query: 376 LEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV--SSSP 429
LE++ FQ D+ EAM++ G LE+L VDGG T N++LMQLQADL G PV S +P
Sbjct: 373 LESIAFQIADVFEAMQQAAGGPLERLSVDGGATRNRFLMQLQADLLGRPVIRSDTP 428
>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol
kinase-like proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of proteobacterial glycerol kinase (GK)-like
proteins, including the glycerol kinase from Pseudomonas
aeruginosa. Most bacteria, such as Escherichia coli,
take up glycerol passively by facilitated diffusion. In
contrast, P. aeruginosa may also utilize a binding
protein-dependent active transport system to mediate
glycerol transportation. The glycerol kinase
subsequently phosphorylates the intracellular glycerol
to glycerol 3-phosphate (G3P). GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 470
Score = 314 bits (807), Expect = e-103
Identities = 141/411 (34%), Positives = 218/411 (53%), Gaps = 27/411 (6%)
Query: 19 HKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTI 78
+ + P GWVE DP+ +L + C+E + AIG+ NQ E+ +
Sbjct: 28 LALRHKQHYPNPGWVEHDPLELLANLRACLEAA-----------GVVDAIGLANQGESCL 76
Query: 79 VWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMD 138
WD+ +G+PL IVW D RT+S+++ ++ GLP+ YFSA KL W++
Sbjct: 77 AWDARSGEPLSPVIVWQDNRTESVLERLRAEGAEAMVRAR-TGLPLDAYFSASKLGWILR 135
Query: 139 NVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQL 198
N+ V+ A + + GT D++ + LTG +TDVT ASRT LMNL TLQW+P+L
Sbjct: 136 NLPAVRRAHRRGRLRLGTTDAFFLDRLTG-----TFVTDVTTASRTSLMNLETLQWDPEL 190
Query: 199 LKFFNIPSQILPQIRSSSEIYGCLKDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTY 258
+ F +P + LP+IR + +G + P++ + DQQ++L G C Q G AK T+
Sbjct: 191 CRLFGVPIECLPEIRPTVGDFGDIG-----CTPLTASIVDQQASLYGHGCRQPGDAKITF 245
Query: 259 GTGCFLLYNTGTAIVHS-SQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNI 317
GTG F L TG I + GLL TVA+Q G P YAL+G + A +W + L +
Sbjct: 246 GTGAFALAITGEVIPRAPGSGLLPTVAWQIG--EPPVYALDGGVYDAAAAVEWAK-RLGL 302
Query: 318 IADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALE 377
+D E+ + + + FVPA SGL P+W R A + G++ T++ D+ +A LE
Sbjct: 303 FSDFEELAAFPAPPAIARGLAFVPALSGLACPHWDRSAAGLWLGMSLATTRQDMCQALLE 362
Query: 378 AVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSS 428
V ++ +++ AM V ++L +DGG+T N Y Q AD+ + +
Sbjct: 363 GVAMRSAEVIYAMDGVRPVG-DRLSIDGGLTRNPYFCQFLADVLQREIVTP 412
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 295 bits (757), Expect = 2e-95
Identities = 144/430 (33%), Positives = 223/430 (51%), Gaps = 39/430 (9%)
Query: 18 YHKVELETLTPKEGWVEQDPMV----ILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
Y K+EL L P+ G+VE DP I+ +++E ++ D ++ I +GI+ Q
Sbjct: 28 YDKIEL--LYPEPGYVEIDPDKLWTQIVGVIKEAVK-------DANLTAKQIAGLGISTQ 78
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIV----DTYASKIKN--TTFLTTICG------ 121
R + + W+ +TGKP +N I W D+R +V ++ K + L +
Sbjct: 79 RGSFLTWNKSTGKPYHNFITWKDLRADELVKEWNNSLLMKAIRVASKVLHLLTRSKRFLA 138
Query: 122 ---LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDV 178
L ++L W++ N E+K A+K+ LFGT+D+WL++ LTGG H+TDV
Sbjct: 139 ASVLKFMNQHVTLRLLWVLQNNPELKKALKEGNVLFGTIDTWLLYKLTGGK---EHVTDV 195
Query: 179 TNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYG-CLKDGPLQGV--PISGI 235
+NAS T L + T++W L F IPS ILP++ +S +G + L GV PI
Sbjct: 196 SNASATGLFDPFTMEWSSWALSLFGIPSSILPKVVDTSGDFGSTDPE--LFGVPIPIRAS 253
Query: 236 LGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITY 295
+GDQQ+AL G C + G K T GTG F+ NTG S +GL V ++ G + Y
Sbjct: 254 VGDQQAALFGSCCFERGDVKITMGTGAFVNINTGPKPHASVKGLYPLVGWKIGNE--VVY 311
Query: 296 ALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDA 355
EG+ G W + ++ + D E + V F+PAFSGL P A
Sbjct: 312 LAEGASNDTGTAIDWAQ-SIGLFTDPAETSDMANSVPDSEGVYFIPAFSGLQPPINDPRA 370
Query: 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQ 415
+ GL T+K +V+A LE++ F+ + + E +K++ G ++K+ VDGG++ N ++ Q
Sbjct: 371 CAGFIGLKPSTTKEHLVRALLESIAFRIKQLYETIKKETGQPIKKIRVDGGVSNNDFICQ 430
Query: 416 LQADLTGTPV 425
L ADLTG PV
Sbjct: 431 LLADLTGLPV 440
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 288 bits (739), Expect = 1e-93
Identities = 126/421 (29%), Positives = 198/421 (47%), Gaps = 31/421 (7%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
+L E E PK GWVEQDP I + E + + + I AIG+++Q
Sbjct: 22 NILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAAA-----QASGGQIAAIGVSSQ 76
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
E I+ D+ G+PL AI+W D RT + +I + GL FS KL
Sbjct: 77 GEGVILVDAN-GRPLTPAILWQDSRTAEECERLEEQIGAD-EIYERTGLRPHPMFSGPKL 134
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
WL ++ E+ + TV +L + LTG + D +NASRT+L +++T
Sbjct: 135 LWLKEHRPEI---YSKADKIL-TVADYLAYRLTG-----EFVIDYSNASRTMLFDIQTRD 185
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYG------CLKDGPLQGVPISGILGDQQSALVGQS 247
W+P+LL+ IP ++LP++ E+ G G G P+ DQQ A +G
Sbjct: 186 WDPELLEAAGIPRELLPEVVPPGEVAGAISAEAAALLGLPPGTPVVAGGHDQQCAALGAG 245
Query: 248 CLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQT 307
+ G A + GT + + + +GLL A P Y E S G
Sbjct: 246 AVDEGDAALSAGTSEVITAVSEP-EPATDEGLLCYPA-----AIPGKYVTEASFFTGGAL 299
Query: 308 FKWLRDNLNIIADLNEIESLVQKSSSH--TDVVFVPAFSGLYAPYWQRDARSIICGLTDE 365
+W RD + D ++ E+ Q++ + ++ +P FSG PYW AR I GLT
Sbjct: 300 LRWFRDEFGLREDGSDYEAAAQEAPNSGPNGLLILPHFSGSGTPYWDPAARGAIFGLTLG 359
Query: 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
T++ DI +A LE + ++ RD L+A+ E G+ ++++ V GG + + +Q+ AD+ G PV
Sbjct: 360 TTRADIYRALLEGIAYELRDNLDAL-EAAGIKIDRIRVTGGGSRSDLWLQILADIFGLPV 418
Query: 426 S 426
Sbjct: 419 E 419
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 227 bits (580), Expect = 3e-69
Identities = 119/425 (28%), Positives = 192/425 (45%), Gaps = 35/425 (8%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
E+L E E TP+ GW EQDP V V E I + V ++P++I AIG++ Q
Sbjct: 22 EVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRELVA---KAGVDPSEIKAIGVSGQ 78
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
T + D G+PL AI++ D R K V+ +I G P+ + + A K+
Sbjct: 79 GPTVVPVDKD-GRPLRPAIIYMDRRAKEEVEELKERIGEEEIFE-RTGNPLDSQYVAPKI 136
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W N EV F +S++++ LTG + D ++AS + L ++R +
Sbjct: 137 LWFKRNEPEVWERT----RKFLQSNSYIVYKLTGEL-----AVDHSSASGSGLYDIRKGE 187
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGDQQSALVGQS 247
W +LL IP +LP++ +I G + + G G P+ D +A +G
Sbjct: 188 WSEELLDLLGIPEDLLPKLVRPGDIVGTVTEEAAEETGLPAGTPVVAGGADAAAAALGAG 247
Query: 248 CLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQT 307
++ G A GT ++ T L+++ P TY L G ++ G
Sbjct: 248 VVEPGDAMEMLGTSGVIIVVTDRPKFDP--RLISSPHVV-----PGTYLLNGGMSTGGAA 300
Query: 308 FKWLRDNLNIIADLN------EIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDARSIIC 360
+W RDN E+E +K D ++F+P +G P W DAR +
Sbjct: 301 LRWFRDNFGPEETEGGLDAYDELEEEAEKVPPGADGLLFLPYLAGERTPIWDPDARGVFF 360
Query: 361 GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420
GLT ++ + +A LE V + R ILE +E GV + +++ GG ++ MQ++AD+
Sbjct: 361 GLTLGHTRAHLYRAVLEGVAYALRHILEIAEEA-GVKVSRVVAVGGGAKSRLWMQIKADV 419
Query: 421 TGTPV 425
G PV
Sbjct: 420 LGLPV 424
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 224 bits (572), Expect = 5e-68
Identities = 110/436 (25%), Positives = 187/436 (42%), Gaps = 29/436 (6%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
++F E++ + E TP+ GW EQDP + + E + + L + I+P+ I
Sbjct: 19 VLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQL---LEESKIDPDAI 75
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPIS 125
AIGI+ Q ++ D+ G+PL AI+W+D R V+ ++ L GL
Sbjct: 76 AAIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEELEERLGGE-ALYARTGLQAM 133
Query: 126 TYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTL 185
F+A KL WL +N ++ + +L + LTG T++++AS T
Sbjct: 134 PGFTAPKLLWLKENEPDLFAKAAK----ILLIKDYLRYRLTGEF-----ATEISDASGTG 184
Query: 186 LMNLRTLQWEPQLLKFFNIP-SQILPQIRSSSEIYGCLKD------GPLQGVPISGILGD 238
L+++RT +W+ +LL +P +LP + E+ G L G G P+ GD
Sbjct: 185 LLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGD 244
Query: 239 QQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALE 298
+A +G + G ++ GT + T + + G P + +
Sbjct: 245 NAAAALGAGAVDPGDVSSSTGTS--GVVRAATDKPLDDP-RGSIYTFCLGL--PGWFIVM 299
Query: 299 GSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSH---TDVVFVPAFSGLYAPYWQRDA 355
G+ G +WLR+ + E+ + ++F+P SG P+ A
Sbjct: 300 GANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAA 359
Query: 356 RSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQ 415
R GLT ++ + +A LE V F D LEA++E G ++ V GG + +Q
Sbjct: 360 RGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQ 419
Query: 416 LQADLTGTPVSSSPIG 431
+ AD G PV +
Sbjct: 420 ILADALGLPVVVPEVE 435
>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the C-terminal domain.
Length = 245
Score = 214 bits (547), Expect = 2e-67
Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 21/247 (8%)
Query: 5 TIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPND 64
IVF +++ ++PK GW EQDP I + + I K L I+P
Sbjct: 14 AIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALAQAIRKI---LQQSGISPKQ 69
Query: 65 IVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPI 124
I IGI+ Q ++ D KPLY AI+W+D RT IV+ + L I G I
Sbjct: 70 IKGIGISGQGHGLVLLDKN-DKPLYPAILWNDTRTAEIVENLKEEG-GADKLYEITGNTI 127
Query: 125 STYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRT 184
F+ KL WL ++ E+ + F + +L W LTG TD ++AS T
Sbjct: 128 WPGFTLSKLRWLKEHEPEIFERAR----KFLLIHDYLRWRLTG-----QFTTDYSDASGT 178
Query: 185 LLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGD 238
++ N++TL+W+ +LL IP +LP + SSEIYG L G +G+P+ G GD
Sbjct: 179 MMFNIKTLEWDEELLAILGIPPDLLPPLVESSEIYGTLNPEHAALFGLDEGIPVVGGGGD 238
Query: 239 QQSALVG 245
Q+A +G
Sbjct: 239 NQAAALG 245
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 172 bits (438), Expect = 1e-48
Identities = 114/423 (26%), Positives = 180/423 (42%), Gaps = 29/423 (6%)
Query: 11 STSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGI 70
EL+ + E T +P GW EQDP V+ +E + + DI AIG+
Sbjct: 19 LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEALLD---QAGDSAEDIAAIGV 75
Query: 71 TNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSA 130
T Q ++ D G+ L AI+W+D R+ V K + + +I G + ++
Sbjct: 76 TGQMHGAVLLDQQ-GRVLRPAILWNDTRSAPEVT--ELKARLGAEIFSITGNIPTPGWTL 132
Query: 131 VKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLR 190
KL WL +N EV I + D ++ LTG TD ++AS TLL +
Sbjct: 133 PKLLWLKENEPEVFRRIAR---VLLPKD-YIRLRLTG-----ELATDRSDASGTLLFDAA 183
Query: 191 TLQWEPQLLKFFNIPSQILPQIRSSSEIYGCL------KDGPLQGVPISGILGDQQSALV 244
+ +W L + IP +LP + SEI G + K G G P+ GD +A +
Sbjct: 184 SREWSDDLCALYGIPEDLLPPLHEPSEIAGAVTPEAARKTGLKAGTPVVAGAGDNAAAAL 243
Query: 245 GQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVA 304
G + GQA + GT + + + ++T F P + A
Sbjct: 244 GAGVVDPGQASLSLGTSGVVAVVSEGPVPDPKGAVIT-----FAHAVPGRWYQVTCTNSA 298
Query: 305 GQTFKWLRDNLN-IIADLNEIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDARSIICGL 362
G +W RD L E+ L + + ++F+P +G PY +AR GL
Sbjct: 299 GSALRWARDLLGPADVSYAEMAELAAQVPVGANGLLFLPYLNGERTPYNDPNARGAFFGL 358
Query: 363 TDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG 422
T ++ + +A LE V F RD LE + G A +++ + GG ++ Q+ AD+ G
Sbjct: 359 TLSHTRGHLARAVLEGVAFSLRDCLEVL-HGMGTAPQRIKLIGGGAKSELWRQILADVLG 417
Query: 423 TPV 425
PV
Sbjct: 418 VPV 420
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 169 bits (430), Expect = 2e-47
Identities = 119/426 (27%), Positives = 181/426 (42%), Gaps = 56/426 (13%)
Query: 21 VELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVW 80
E PK GW EQDP + I + L I ++ IG++ Q ++
Sbjct: 29 AEYPLSQPKPGWSEQDPEDWWEATKAAIREL---LAKSGIAGGEVRGIGLSGQMHGLVLL 85
Query: 81 DSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNV 140
D GK L AI+W+D RT + + ++ L I G P F+A KL WL ++
Sbjct: 86 DKD-GKVLRPAILWNDQRTTAECEEITERV--GGELIEITGNPALPGFTAPKLLWLREHE 142
Query: 141 DEVKNAI------KDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQW 194
E I KD +L + LTG TDV++AS TLL+++ W
Sbjct: 143 PENFAKIAKVLLPKD----------YLRYRLTGE-----IATDVSDASGTLLLDVAKRDW 187
Query: 195 EPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGDQQSALVGQSC 248
+LL I ILP++ SSE+ G L G G P+ GD + VG
Sbjct: 188 SDELLDALGIDRAILPELYESSEVTGTLTAEAAAELGLPAGTPVVAGGGDNAAGAVGNGV 247
Query: 249 LQAGQAKNTYGTGCFLL-------YNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSI 301
++ G A + GT + + VH+ F P + L G
Sbjct: 248 VRPGDAFVSLGTSGVVFAVSDSPAPDPEGR-VHT-----------FCHAVPGRWYLMGVT 295
Query: 302 AVAGQTFKWLRDNLNIIADLNEIESLVQKSS--SHTDVVFVPAFSGLYAPYWQRDARSII 359
AG + KW RD E+ + ++ S ++F+P SG P+ +AR
Sbjct: 296 LSAGGSLKWFRDTFGPDDSYEELLAEAEQVPPGSEG-LLFLPYLSGERTPHNDPNARGAF 354
Query: 360 CGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
GLT ++ + +A LE V F RD LE ++E GV +++++ GG + +Q+QAD
Sbjct: 355 IGLTLSHTRAHLTRAVLEGVAFSLRDSLEILRE-LGVPIDRIIAIGGGARSPLWLQIQAD 413
Query: 420 LTGTPV 425
+ G PV
Sbjct: 414 VLGLPV 419
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 164 bits (416), Expect = 1e-45
Identities = 110/429 (25%), Positives = 178/429 (41%), Gaps = 41/429 (9%)
Query: 11 STSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGI 70
E++ ++P GW EQDP EE I++ L DI IGI
Sbjct: 17 EQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKEL---LEQASEMGQDIKGIGI 73
Query: 71 TNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSA 130
+ Q ++ D+ G+ L AI+W+D RT + + I G F+A
Sbjct: 74 SGQMHGLVLLDAN-GEVLRPAILWNDTRTAQECE-ELEAELGDERVLEITGNLALPGFTA 131
Query: 131 VKLNWLMDNVDEVKNAI------KDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRT 184
KL W+ + EV I KD +L + LTG ++T+ ++AS T
Sbjct: 132 PKLLWVRKHEPEVFARIAKVMLPKD----------YLRYRLTGE-----YVTEYSDASGT 176
Query: 185 LLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGD 238
++ W +LL ++P LP++ SSE G ++ G GVP++ GD
Sbjct: 177 GWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAGVPVAAGGGD 236
Query: 239 QQSALVGQSCLQAGQAKNTYGT-GCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYAL 297
+ +G + G A + GT G + G + F P +
Sbjct: 237 NAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKP--LPDPAGAVHG----FCHALPGGWLP 290
Query: 298 EGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSS-SHTDVVFVPAFSGLYAPYWQRDAR 356
G A + +W R+ D+ + L ++S V F+P +G P+ AR
Sbjct: 291 MGVTLSATSSLEWFRELFGKE-DVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQAR 349
Query: 357 SIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQL 416
GLT T++ D+ +A LE V F RD L+ ++E G+ ++ + + GG + Q+
Sbjct: 350 GSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQM 409
Query: 417 QADLTGTPV 425
AD+ GTPV
Sbjct: 410 LADIFGTPV 418
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 157 bits (400), Expect = 9e-44
Identities = 119/410 (29%), Positives = 177/410 (43%), Gaps = 38/410 (9%)
Query: 27 TPKE---GWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDST 83
TPK G DP + +E+ I L P+ I AI IT+ E+ V
Sbjct: 31 TPKNVSDGGPYFDPDELWRAIEKVI-CQA-----LAAAPDPIAAISITSVGES-GVLVDA 83
Query: 84 TGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEV 143
G+PLY AI W D RT+ + + I GLP +S K+ WL ++ EV
Sbjct: 84 DGEPLYPAIAWYDRRTEEEAEELRKQDPGLAIYE-ITGLPPDPIYSLFKILWLREHRPEV 142
Query: 144 -KNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFF 202
K A K + + ++++ LTG +TD T ASRTLL ++R +W +LL+ F
Sbjct: 143 WKRAYK-----WLHIPDYILFRLTGRP-----VTDFTLASRTLLFDIRAREWSEELLEMF 192
Query: 203 NIPSQILPQIRSSSEIYGCLKDGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGC 262
IP LP++ S I G + G+ L G A G
Sbjct: 193 GIPPDALPELVPSGTIIGEVSKDA---AESLGLSTGTPVVLGGHDHPVGSYAAGVIDPGD 249
Query: 263 FLLYNTGTA---IVHSSQGL---LTTVAYQFG-ARAPITYALEGSIAVAGQTFKWLRDNL 315
+L + GTA + +S L LT FG P Y L + G +WLR+ L
Sbjct: 250 -ILDSMGTAEALLAIASAKLKETLTREGVAFGVYAEPDRYYLIAGLPSGGFAIEWLRNIL 308
Query: 316 NIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAA 375
A + + S+ +F P G +P A GLTD TS+ DI ++
Sbjct: 309 GGEASSKRAQEKLLDSA----ALFYPYSRGSGSPIRSEIAGGAFYGLTDTTSQEDITRSV 364
Query: 376 LEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
LE + F+ R LE +++ G +++V GG + NK +QL+A + G P+
Sbjct: 365 LEGLTFEARSTLECLEK-LGFEGSRIVVIGGGSRNKLWLQLKASVLGKPI 413
>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-xylulose kinases (L-XK, also
known as L-xylulokinase; EC 2.7.1.53), which catalyze
the ATP-dependent phosphorylation of L-xylulose to
produce L-xylulose 5-phosphate and ADP. The presence of
Mg2+ might be required for catalytic activity. Some
uncharacterized sequences are also included in this
subfamily. L-XKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 447
Score = 156 bits (396), Expect = 5e-43
Identities = 102/440 (23%), Positives = 177/440 (40%), Gaps = 40/440 (9%)
Query: 1 MSKSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDI 60
++K+ ++F E+ TLTP+ G+VEQD + V I + + +
Sbjct: 11 VTKA-VLFDLDGREIAV-ASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELLE---KAGV 65
Query: 61 NPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTY-ASKIKNTTFLTTI 119
+ DI IG+T Q + + D GKP+ I+ D R +V+ + ++ F T
Sbjct: 66 DAEDIAGIGVTGQGDGLWLVDKE-GKPVGPGILSLDSRAAELVERWQEDGTEDAIFELT- 123
Query: 120 CGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVT 179
G + + L WL ++ E + D W+ + LTG TD T
Sbjct: 124 -GQGLWAGQPSSLLAWLKEHEPERLARAG---TVLFCKD-WIRFRLTGEA-----ATDPT 173
Query: 180 NASRTLLMNLRTLQWEPQLLKFFNIPS--QILPQIRSSSEIYGCLKD------GPLQGVP 231
+AS + L++LRT Q++ +LL + +LP I S++I G L G G P
Sbjct: 174 DASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGTLTAEAAALTGLPAGTP 233
Query: 232 ISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVA---YQFG 288
+ G L D + +G + G + GT + + + + Y
Sbjct: 234 VVGGLFDVVACALGSGLVDEGDLCSIAGTWSINEVLSDDPVPEAEPFGYSLYLPPGYYLV 293
Query: 289 ARAPITYA--LEGSIAVAGQTFKWLRDNLNIIADLNE-IESLVQKSSSHTDVVFVPAFSG 345
+ T A L+ + + ++ A LN + + + +F P
Sbjct: 294 EESSPTSASNLDWFLRTLLEDEAAKASGGSLYALLNRLVAAA---PPEYHPYLFEP---F 347
Query: 346 LYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDG 405
L +AR+ GL+ ++ D+V+A E V F RD LEA++ ++ + G
Sbjct: 348 LRGSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHRDHLEALRATGLP--GEIRLTG 405
Query: 406 GMTANKYLMQLQADLTGTPV 425
G + Q+ AD+ G PV
Sbjct: 406 GAARSPVWAQMFADVLGLPV 425
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 156 bits (397), Expect = 1e-42
Identities = 111/454 (24%), Positives = 174/454 (38%), Gaps = 55/454 (12%)
Query: 3 KSTIVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINP 62
K+ +V + L+ ET G EQDP V + L D +NP
Sbjct: 13 KAALV--SPDGRLVASATEAYETHYLPGGGAEQDPEDWWDAVVRATRRL---LEDSGVNP 67
Query: 63 NDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVR--------TKSIVDTYASKIKNTT 114
+ I + Q + + D G+PL AI+W D R + + +K
Sbjct: 68 RRVAGISFSGQMQGVVPVD-EDGRPLRPAIIWMDQRAAPEAERLMEGLGKVAGYGLKLLK 126
Query: 115 FLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLH 174
+L G P S K+ WL DN +V K L +L LTG
Sbjct: 127 WLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTY--KFLD--AKDYLNLRLTGR-----F 177
Query: 175 ITDVTNASRTLLMNLRT--LQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GP 226
TD +AS T L + R ++W +LL I + LP++ S+++ G + G
Sbjct: 178 ATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTDVVGTVLPEAARELGL 237
Query: 227 LQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQ 286
+G P+ GD +A VG + G A GT + H
Sbjct: 238 PEGTPVVAGGGDASAAAVGAGAVADGDAHLYLGT-------SSWIATHVPFPKTDVRHRI 290
Query: 287 FGARAPI--TYALEGSIAVAGQTFKWLRDNL-------------NIIADLNEIESLVQKS 331
F I Y + AG +WL+D L ++ L+E+ +
Sbjct: 291 FSLPHAIPGKYLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERLDELAASAPPG 350
Query: 332 SSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMK 391
S ++F+P G +P +AR L+ ET++ D+++A LE V R +LEA++
Sbjct: 351 S--NGLIFLPWLHGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNLRWLLEAVE 408
Query: 392 EDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
G L +L GG + Q+ AD+ G P+
Sbjct: 409 RFLGRRLGELRFVGGGARSDLWCQIIADVLGRPI 442
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 145 bits (368), Expect = 4e-39
Identities = 100/434 (23%), Positives = 166/434 (38%), Gaps = 59/434 (13%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
++ TP +G EQDP I V E +++ V I A+ ++
Sbjct: 22 RIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEVVA-----KALGGRIAAVSFSSA 76
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKI------KNTTFLTTICGLPISTY 127
+ I D G+PL I W+D R + ++ + T G P+
Sbjct: 77 MHSLIALDED-GEPLTPVITWADTRAAEYAEELKERLDGRELYQRT-------GCPLHPM 128
Query: 128 FSAVKLNWLMDN-VDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLL 186
+ KL WL + + A K F ++ ++++ L G + D + AS T L
Sbjct: 129 YPLAKLLWLKEERPELFAKAAK-----FVSIKEYVLYRLFG-----ELVVDYSIASGTGL 178
Query: 187 MNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDG--PLQGVP-----ISGILGDQ 239
+N+ TL W+ + L+ I + LP++ ++E LK P G+P + G D
Sbjct: 179 LNIHTLDWDEEALEIAGISEEQLPELVPTTEQLRGLKAERAPKLGLPEDTPFVLGA-SDG 237
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTG-------TAIVHSSQGLLTTVAYQFGARAP 292
+ +G + G A T GT +G + L Y+
Sbjct: 238 ALSNLGVGAVDPGVAAITIGT-------SGAIRVVLDQPVTDPPGRLFC---YRLDKG-- 285
Query: 293 ITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTD-VVFVPAFSGLYAPYW 351
+ L G++ G +WLRD L + + E + T + F+PA +G P W
Sbjct: 286 -RWVLGGAVNNGGIVLRWLRDTLALPEEEEAEELGIDPYDGLTRGLEFLPAGAGERFPPW 344
Query: 352 QRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANK 411
R+ + GLT I AA+E V + R ILE + + V L + GG T ++
Sbjct: 345 LSGERAPLWGLTRAARGSFIGLAAMEGVAHRLRAILEGIIFNLSVGLALVEASGGATESR 404
Query: 412 YLMQLQADLTGTPV 425
AD +
Sbjct: 405 AWGGFLADALWRQI 418
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 135 bits (343), Expect = 6e-38
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 254 AKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRD 313
A + GT F+L T V S G+ + G + LEG + AG WL
Sbjct: 1 AAVSLGTSSFVLVETSEP-VLSVHGVWGPYTNEGG------WGLEGGQSAAGSLLGWLLQ 53
Query: 314 NLNI---IADLNEIESLVQKSSSHTD-----VVFVPAFSGLYAPYWQRDARSIICGLTDE 365
L + D +ESL + D ++F+P FSG AP AR I GL+
Sbjct: 54 TLRAREELRDAGLVESLALLLALAADAPAGGLLFLPDFSGERAPGADPHARGAITGLSSP 113
Query: 366 TSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
T+ ++ +A LE + R ILEA+ E G +++++ GG + N L+QL AD G PV
Sbjct: 114 TTLANLYRALLEGLALALRQILEALAEL-GAPIDRIIASGGGSRNPLLLQLLADALGRPV 172
>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This
subfamily consists of uncharacterized hypothetical
bacterial proteins with similarity to Escherichia coli
sugar kinase ygcE , whose functional roles are not yet
clear. Escherichia coli ygcE is recognized by this
model, but is not present in the alignment as it
contains a deletion relative to other members of the
group. These proteins belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 488
Score = 139 bits (353), Expect = 1e-36
Identities = 106/439 (24%), Positives = 182/439 (41%), Gaps = 54/439 (12%)
Query: 14 ELLTYHKVELET-LTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITN 72
L+ +V +E +PK GW EQDP + E C + ++P I + +T
Sbjct: 22 NLVAKGQVPIEPYYSPKPGWAEQDPDY---YWQALCEACRELWEQIPVDPGRIAGVALTT 78
Query: 73 QRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPIS--TYFSA 130
QRET ++ D GKPL AI+W D R + A I+ L + G P + +
Sbjct: 79 QRETFVLLDKD-GKPLRPAILWLDQRAAEQLPPLAWWIR---LLFKLIGKPETIDVIPAE 134
Query: 131 VKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLR 190
K NW+ +N E I F + +L + LT G + V + + + +
Sbjct: 135 AKANWIRENEPE----IWAKTAKFLLLSGYLTYKLT-----GRFVDSVASQVGYIPFDYK 185
Query: 191 TLQW-EPQLLK--FFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGDQQS 241
+W + + LK F I + LP++ ++ G + G +G P+ D+
Sbjct: 186 KRRWAKKEDLKWQGFPIEPEQLPELVPPGKLIGTITAEAAEATGLPEGTPVIAGGSDKAC 245
Query: 242 ALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGL-LTTVAYQFGARAPITYALEGS 300
+G L+ G A + GT T T SS+ + A P Y E
Sbjct: 246 ETLGAGALEPGIACLSLGT-------TATVNGTSSRYFEPDRFFPAYPAVIPGGYNPEIE 298
Query: 301 IAVAGQTFKWLRD-----------NLNIIAD--LNEIESLVQKSSSHTD-VVFVPAFSGL 346
I W ++ L I + L+E +++ +D ++ P +
Sbjct: 299 IFRGYWLVSWFKEEFGQKEVQEAEELGIAPEALLDE---ALKEIPPGSDGLMLQPYWGPG 355
Query: 347 YAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGG 406
P+W +AR I G D ++ + +A +E + + R+ LE +++ GV ++KL V GG
Sbjct: 356 -MPHWDPEARGAIIGFGDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVKIKKLRVSGG 414
Query: 407 MTANKYLMQLQADLTGTPV 425
+ + + Q+ AD+ G PV
Sbjct: 415 GSQSDLICQITADIFGLPV 433
>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of proteobacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17). They share
high sequence similarity with Escherichia coli
xylulokinase (EcXK), which catalyzes the rate-limiting
step in the ATP-dependent phosphorylation of D-xylulose
to produce D-xylulose 5-phosphate (X5P) and ADP. Some
uncharacterized sequences are also included in this
subfamily. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 493
Score = 107 bits (269), Expect = 2e-25
Identities = 94/416 (22%), Positives = 162/416 (38%), Gaps = 35/416 (8%)
Query: 22 ELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD 81
E E P+ GW EQ P+ +CI + L + I IG Q T++ D
Sbjct: 30 EHEQTVPQFGWSEQRPLDWWQGACDCIREV---LARVPGAAERIAVIGACGQMHGTVLLD 86
Query: 82 STTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVD 141
A +W+D RT+ VD + ++ +L P + + A KL W +N
Sbjct: 87 DAGELTRDTAPLWNDKRTQPQVDAFEARNGWEKYLA-HLANPPAPAWPAFKLAWWRENDP 145
Query: 142 EVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKF 201
+ A + D ++ + LTG + TD T AS + LM+ T W Q +
Sbjct: 146 Q---AYSRLAKVLMPKD-YINFMLTGAM-----ATDRTEASCSFLMDPATRSWSSQACET 196
Query: 202 FNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILGDQQSALVGQSCLQAGQAK 255
+ +LP +R +I G + G G+P+ D AL+G + G
Sbjct: 197 MGLDVDLLPPLRLPLDIIGQVTQPAADLTGLPAGIPVLVGASDYAMALLGSGVCEPGMGS 256
Query: 256 NTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLR--- 312
++ GT + ++H ++ + GA T G AV +W R
Sbjct: 257 DSTGTSTIVTLVADRPLLH---PEVSNLHTAEGAWGAFTLLDAGGDAV-----RWARRAL 308
Query: 313 -DNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDI 371
DN A L + + ++F+P +G R++R+ GL + + +
Sbjct: 309 HDNQLSYAQL--VAEAAAAPAGSEGLLFLPYLTGERLGE-HRNSRAQFFGLGAKHGRGHL 365
Query: 372 VKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSS 427
+A LE V F L + + C E+++ GG ++++A + G P+
Sbjct: 366 HRAVLEGVAFAVWRHLRQL-QKCQGRPERMIASGGGARTALWLKIKASVYGLPILV 420
>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is composed of ribulokinases (RBKs) and
similar proteins from bacteria and eukaryota. RBKs
catalyze the MgATP-dependent phosphorylation of a
variety of sugar substrates including L- and/or
D-ribulose. Members of this subfamily contain two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. Members of this
subfamily belong to the FGGY family of carbohydrate
kinases.
Length = 465
Score = 94.9 bits (236), Expect = 4e-21
Identities = 101/439 (23%), Positives = 156/439 (35%), Gaps = 53/439 (12%)
Query: 12 TSELLTYHKVELETLTP-KEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGI 70
L P GW EQDP V + V ++P+ + A+G+
Sbjct: 21 NGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAAVA---AAGVDPDQVAALGV 77
Query: 71 TNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTT--FLTTICGLPISTYF 128
T + D+ G+PL A++W D R A+ I L G +S +
Sbjct: 78 DATSCTVVPLDAE-GQPLTPALLWDDHRAA----DQANAINEVGGPALWDYGGKIVSPEW 132
Query: 129 SAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMN 188
K+ WL+ E + D WL W LTG T A
Sbjct: 133 MLPKVLWLL---QEAPDTWNRADHFLEAPD-WLGWRLTGKR---PVATCSAVAKWGYDA- 184
Query: 189 LRTLQWEPQLLKFFNIP---SQILPQIRSSSEIYGCL------KDGPLQGVPISGILGDQ 239
R +W + P + LP + + G L K G G ++ + D
Sbjct: 185 -REGEWANSVFDKLGDPRLTAAKLPAVVAPLTRAGGLLPEAAEKTGLPPGTAVAVGMTDA 243
Query: 240 QSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVH-----SSQGLLTTVAYQFGARAPIT 294
+ + + G+ + GT+IVH A + A P
Sbjct: 244 HAGQIAVGVVTPGR----------FVLVLGTSIVHKGVSEELHEDEMCGAV-YSAILPGY 292
Query: 295 YALEGSIAVAGQTFKWLRDNLNIIADLNEI--------ESLVQKSSSHTDVVFVPAFSGL 346
+ LEG + G F W D + A +E + ++ ++ + F+G
Sbjct: 293 WWLEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAAERGPQLRGLLALDRFNGN 352
Query: 347 YAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGG 406
+P+ + R + GLT T + DI +A LEAV F TR I+EA + L GG
Sbjct: 353 RSPFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTRLIVEAFHGLGYPEVGPLYAAGG 412
Query: 407 MTANKYLMQLQADLTGTPV 425
+ MQ+ AD+TG PV
Sbjct: 413 GARSHLWMQIHADVTGRPV 431
>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and
ribulose-phosphate 3-epimerase fusion proteins-like;
belongs to the FGGY family of carbohydrate kinases.
This subgroup is composed of uncharacterized proteins
with similarity to carbohydrate kinases. Some members
are carbohydrate kinase and ribulose-phosphate
3-epimerase fusion proteins. Carbohydrate kinases
catalyze the ATP-dependent phosphorylation of their
carbohydrate substrate to produce phosphorylated sugar
and ADP. The presence of Mg2+ is required for catalytic
activity. This subgroup shows high homology to
characterized ribulokinases and belongs to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 484
Score = 92.8 bits (231), Expect = 2e-20
Identities = 114/447 (25%), Positives = 172/447 (38%), Gaps = 74/447 (16%)
Query: 12 TSELLTYHKVELETLTPKEGWVEQDPMVILHLVE---ECIEKCV-GYLVDLDINPNDIVA 67
T L T P+ GW EQ+P E E + V L + I D+ A
Sbjct: 21 TGRPLGSAAAPYGTTHPRPGWAEQNP-------EDWWEALGAAVREALAEAGIAAPDVAA 73
Query: 68 IGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTIC---GLPI 124
+ T + D+ G PL AI+W DVR A+++ T G +
Sbjct: 74 LCCDTTCCTVVALDAA-GTPLRPAILWMDVRA----AEEAARVLATGDDALRLNGSGGGV 128
Query: 125 STYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRT 184
S + K WL N +V + D +L + LTG G L NA
Sbjct: 129 SAEWMVPKAMWLKKNEPDV---YARAATICEAQD-YLNFRLTGRWCGSL-----NNA--A 177
Query: 185 LLMNLRTLQ--WEPQLLKFFNIPSQI--LPQ-IRSSSEIYGCLKD------GPLQGVPIS 233
+ N TL L +P + LPQ + + E+ G L D G G P++
Sbjct: 178 VRWNYDTLNGGPPEDLYAALGMPDLLDKLPQRVLAVGEVVGSLTDEAAAHLGLPGGTPVA 237
Query: 234 GILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARA-- 291
D ++G ++ GQ + TG++ +H L +F A
Sbjct: 238 QGGADAFVGMIGLGVIEPGQ----------MALITGSSHLH-----LGVTDREFHAPGVW 282
Query: 292 --------PITYALEGSIAVAGQTFKWLRDNL-----NIIADLNEIESLVQKSSSHTDVV 338
P T+ +EG G KW +D + N +LNE + V S +V
Sbjct: 283 GTYPDAVYPGTWLVEGGQTSTGSVLKWFKDLIGGGDDNGYDELNEEAAAVPPGS--EGLV 340
Query: 339 FVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVAL 398
+ F G PY AR I GLT ++ + +A LE V + TR I +AM E G +
Sbjct: 341 VLDYFQGNRTPYTDPLARGAIWGLTLGHTRAHVYRAILEGVAYGTRHIFDAM-EAAGYEV 399
Query: 399 EKLLVDGGMTANKYLMQLQADLTGTPV 425
+++ GG T ++ +Q+ AD+ G P
Sbjct: 400 SEIVAAGGATRSRLWLQIHADVIGVPF 426
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 90.4 bits (225), Expect = 1e-19
Identities = 102/451 (22%), Positives = 180/451 (39%), Gaps = 74/451 (16%)
Query: 6 IVFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDI 65
IV A T E+L E ++ G EQ P + + E + + D I+P ++
Sbjct: 15 IVLDAETGEVLAEGSAPHELISGSNGRREQQPQWWIDALVEAFRQALA---DAGIDPKEV 71
Query: 66 VAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPIS 125
AIG++ Q+ + D+ G+ L A +W D T K+ G
Sbjct: 72 RAIGVSGQQHGLVPLDAQ-GEVLRPAKLWCDTETAPENAELIEKLGGAKAWIERLGNAPL 130
Query: 126 TYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTV---DSWLIWNLTGGVDGGLHITDVTNAS 182
T ++A KL WL ++ E I T+ +L + LTG ++T+ +AS
Sbjct: 131 TGYTASKLLWLKEHEPENFAKIA-------TILLPHDYLNFWLTGR-----YVTEYGDAS 178
Query: 183 RTLLMNLRTLQWEPQLLKFFN---IPSQILPQIRSSSEIYGCLKDGPLQGVPIS-GIL-- 236
T ++RT +W ++L + + LP + S E G ++ + + +S +L
Sbjct: 179 GTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPDEPAGTVRPEAAEALGLSGDVLVA 238
Query: 237 ---GDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTV-AYQFGARAP 292
GD + GTG N +V S G T+ AY + P
Sbjct: 239 SGGGDNMMGAI--------------GTG-----NVKPGVVTMSLGTSGTLYAY---SDKP 276
Query: 293 ITYALEGSIA-VAGQTFKWL---------------RDNLNIIADLNEIESLVQKSSSHTD 336
+ +G +A T WL R+ L + D+ E+ +L ++ +
Sbjct: 277 V-VDPQGEVAGFCSSTGGWLPLICTMNVTVATEQVRNLLGL--DIEELNALAAQAPPGAE 333
Query: 337 -VVFVPAFSGLYAPYWQRDARSIICGLT-DETSKVDIVKAALEAVCFQTRDILEAMKEDC 394
+ +P F+G P +AR + GLT T++ ++ +AA+E F R L+ +
Sbjct: 334 GLTLLPFFNGERTPN-LPNARGSLHGLTSANTTRANLARAAVEGATFGLRYGLDLL-RAL 391
Query: 395 GVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
G+ ++ + GG + Q+ AD+ V
Sbjct: 392 GLKSTEIRLIGGGAKSPAWRQIIADIMNAEV 422
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 87.4 bits (217), Expect = 2e-18
Identities = 105/479 (21%), Positives = 158/479 (32%), Gaps = 98/479 (20%)
Query: 7 VFAASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIV 66
VF T LL P EQ V + V ++P D+V
Sbjct: 19 VFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVA---KAGVDPADVV 75
Query: 67 AIGI--TNQRETTIVWDSTTGKPLY---------NAIVWSDVRTKSIVDTYASKIKNTTF 115
IG+ T ++V G PL N I+W D R ++
Sbjct: 76 GIGVDAT----CSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRA----------VEEAEE 121
Query: 116 LTTIC-------GLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGG 168
+ C G IS KL WL A+ + + WL W LTG
Sbjct: 122 INATCHPVLDYYGGKISPEMMIPKLMWLKRE----APAVWERAAHIFDLADWLTWKLTGS 177
Query: 169 VDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQ 228
+ T + + W + + +I P
Sbjct: 178 IARSR----CTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIV------PA- 226
Query: 229 GVPISGI-------LGDQQSALVGQSCLQAGQAKNTYGTGC----FLLYNTGTAIVHSSQ 277
G P+ G+ LG + +V + A G G L GT+ H
Sbjct: 227 GEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAG--AVGVGGAQPGSLAMIAGTSTCHM-- 282
Query: 278 GLLTTVAYQ--------FGARAPITYALEGSIAVAGQTFKWL---------------RDN 314
LL+ GA P + EG + G L +D
Sbjct: 283 -LLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDG 341
Query: 315 LNIIADLNEI-ESLVQKSSSH----TDVVFVPAFSGLYAPYWQRDARSIICGLTDETS-- 367
I L + E L + +++ + + + F+G +P + +I GLT +TS
Sbjct: 342 EEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPE 401
Query: 368 -KVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
+ +A LEA F TR I+E ++ G+A++ L GG+ N LMQL AD+TG PV
Sbjct: 402 SLALLYRALLEATAFGTRAIIETFEDQ-GIAIDTLFASGGIRKNPLLMQLYADVTGRPV 459
>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional.
Length = 484
Score = 84.2 bits (208), Expect = 2e-17
Identities = 95/419 (22%), Positives = 178/419 (42%), Gaps = 39/419 (9%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
E++ +L P W EQDP + + K +G L D+ A+GI Q
Sbjct: 22 EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAM-KALGDQHSL----QDVKALGIAGQ 76
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
+ D+ + L AI+W+D R +++ + +T +P F+A KL
Sbjct: 77 MHGATLLDAQQ-RVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMP---GFTAPKL 132
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W+ + E+ I +K L +L +TG +D+++A+ T+ +++
Sbjct: 133 LWVQRHEPEIFRQI--DKVLLPK--DYLRLRMTGEF-----ASDMSDAAGTMWLDVAKRD 183
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCL-----KDGPLQGVPISGILGDQQSALVGQSC 248
W +L+ ++ +P + SEI G L K + VP+ GD + VG
Sbjct: 184 WSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGM 243
Query: 249 LQAGQAKNTYGT-GCFLLYNTGTAIVHSSQGLLT---TVAYQFGARAPITYALEGSIAVA 304
+ A QA + GT G + S+G L+ + + F P + L + A
Sbjct: 244 VDANQAMLSLGTSGVYFAV---------SEGFLSKPESAVHSFCHALPQRWHLMSVMLSA 294
Query: 305 GQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVV-FVPAFSGLYAPYWQRDARSIICGLT 363
W L ++++ + + Q++ + V F+P SG P+ A+ + GLT
Sbjct: 295 ASCLDWAA-KLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLT 353
Query: 364 DETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTG 422
+ ++ +A LE V + D ++ + CG+ + + + GG ++Y Q+ AD++G
Sbjct: 354 HQHGPNELARAVLEGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYWRQMLADISG 411
>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is
derived from glucose in two steps. This model describes
one form of gluconate kinase, belonging to the FGGY
family of carbohydrate kinases. Gluconate kinase
phosphoryates gluconate for entry into the
Entner-Douderoff pathway [Energy metabolism, Sugars].
Length = 505
Score = 78.8 bits (194), Expect = 8e-16
Identities = 99/429 (23%), Positives = 165/429 (38%), Gaps = 64/429 (14%)
Query: 27 TPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGK 86
TP G E++P I V I + L D D +I+ + + Q + I +D +
Sbjct: 35 TPASGMAEENPEEIFEAVLVTIREVSINLEDED----EILFVSFSTQMHSLIAFDENW-Q 89
Query: 87 PLYNAIVWSDVRTKSIVDTYASKIK---NTTFLTTICGLPISTYFSAVKLNWLMDNVDEV 143
PL I W+D R YA +IK N + G PI K+ WL ++
Sbjct: 90 PLTRLITWADNRAVK----YAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDI 145
Query: 144 KNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFN 203
+ + ++ L G + D + AS T + NL L W+ + L+
Sbjct: 146 YQKAAK----YLEIKGYIFQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTG 196
Query: 204 IPSQILPQIRSSSEIYGCLKD--GPLQGVPISG--ILGDQQSAL--VGQSCLQAGQAKNT 257
I LP++ ++EI L G+ S ++G L +G + ++ G+A T
Sbjct: 197 IKESQLPKLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVT 256
Query: 258 YGTGCFLLYNTGTAIVHSSQGLLTTV--AYQFGARAPI-TYALE-------GSIAVAGQT 307
GT G + TV + + I YAL G + G
Sbjct: 257 IGT----------------SGAIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDV 300
Query: 308 FKWLRDNL----------NIIADLNEIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDAR 356
+W RD + I + + + + S D ++F P +G AP W +AR
Sbjct: 301 LRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANAR 360
Query: 357 SIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQL 416
GLT K +++AALE V + + A+ E G L + GG +++ Q+
Sbjct: 361 GSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQM 420
Query: 417 QADLTGTPV 425
+D+ +
Sbjct: 421 MSDIFEQEI 429
>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase. This model
represents a subfamily of the FGGY family of
carbohydrate kinases. This subfamily is closely related
to a set of ribulose kinases, and many members are
designated ribitol kinase. However, the member from
Klebsiella pneumoniae, from a ribitol catabolism operon,
accepts D-ribulose and to a lesser extent D-arabinitol
and ribitol (PMID:9639934 and JW Lengeler, personal
communication); its annotation in GenBank as ribitol
kinase is imprecise and may have affected public
annotation of related proteins.
Length = 541
Score = 75.3 bits (185), Expect = 1e-14
Identities = 98/474 (20%), Positives = 160/474 (33%), Gaps = 78/474 (16%)
Query: 10 ASTSELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIG 69
ST ++L ++T TP G Q + I + C+++ + + ++PN + IG
Sbjct: 18 DSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLA---ESKVDPNSVKGIG 74
Query: 70 ---------ITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTF-LTTI 119
+T+ E V S G N I+W D R + A KI T L
Sbjct: 75 FDATCSLVVLTHDGEPLPV--SKNGGADQNIILWMDHRALA----EAEKINATNHNLLRY 128
Query: 120 CGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVT 179
G +S K+ WL +N+ +C F + +L W TG V
Sbjct: 129 VGGKMSVEMEIPKVLWLKNNMPP----ELFARCKFFDLTDFLTWRATG--KEIRSFCSVV 182
Query: 180 NASRTLLMNLRTLQWEPQLLK-----------FFNIPSQILPQIRS-----SSEIYGCLK 223
+ ++ W+ + F + + ++E L
Sbjct: 183 CKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLTAEAAQEL- 241
Query: 224 DGPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTV 283
G G + L D + +G + + + L GT+ H + +
Sbjct: 242 -GLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMA--MTKGP 298
Query: 284 AYQFGARAPITYAL-------EGSIAVAGQTFKWL---------------RDNLNIIADL 321
+ G P AL EG + AG+ + NI L
Sbjct: 299 VFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYL 358
Query: 322 NEI-------ESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVK- 373
NE + S P G +P + R +I GL+ + SK +
Sbjct: 359 NEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALL 418
Query: 374 --AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
A +E + + TR I+EAM G ++ + + GG N LMQL AD PV
Sbjct: 419 YYATMEFIAYGTRQIVEAMNTA-GHTIKSIFMSGGQCQNPLLMQLIADACDMPV 471
>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of
the FGGY family of carbohydrate kinases. This subgroup
is predominantly composed of bacterial D-xylulose
kinases (XK, also known as xylulokinase; EC 2.7.1.17).
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 490
Score = 73.6 bits (181), Expect = 5e-14
Identities = 99/422 (23%), Positives = 177/422 (41%), Gaps = 31/422 (7%)
Query: 16 LTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRE 75
++Y + E+E L+P+ GW EQDP + ++ + + ++I AIGI+ Q
Sbjct: 28 VSYPEQEMEILSPQPGWAEQDPEIWWDYTCAATKQLIN---QGKEDLSNIQAIGISYQMH 84
Query: 76 TTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNW 135
++ D G L AI+W D R SI + ++ L+ + P + F+A KL W
Sbjct: 85 GLVLVDK-QGNVLRPAIIWCDSRAVSIGEKAFQELGEDFCLSHLLNSPGN--FTASKLAW 141
Query: 136 LMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWE 195
+ +N EV + I L G ++ LTG V T + S +L + + +
Sbjct: 142 VKENEPEVFDRI-AKIMLPG---DYIAMKLTGEVT-----TTKSGLSEGMLWDFKKNEVA 192
Query: 196 PQLLKFFNIPSQILPQI--------RSSSEIYGCLKDGPLQGVPISGILGDQQSALVGQS 247
+LL++ + ++P I +SEI L G +G+PI+ GDQ + + +
Sbjct: 193 VELLEYLGLDRSLIPDIVPNFSEQGTVTSEIAAEL--GLSEGIPITYRAGDQPNNALSLN 250
Query: 248 CLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQT 307
L G+ T GT ++Y + Q + T + A + I G
Sbjct: 251 VLNPGEVAATAGTSG-VIYGVTDQPAYDPQSRVNTFLHVNNTPAQPRNGVLLCINGTGIL 309
Query: 308 FKWLRDNL-NIIADLNEIESLVQKSSSHTD-VVFVPAFSGLYAPYWQRDARSIICGLT-D 364
+ WLR L E+ +L + ++ +V +P +G + + + I L +
Sbjct: 310 YSWLRKTLGTADLSYAEMNALAAQVPIGSEGLVVLPFGNGAERMFNNKLIGASIQNLNFN 369
Query: 365 ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLV-DGGMTANKYLMQLQADLTGT 423
K +V+AA E + F LE M+ G ++ + + + A++TGT
Sbjct: 370 RHGKAHLVRAAQEGIVFAFAYGLEIMRNM-GASITVIRAGKANLFLSPLFSDTFANVTGT 428
Query: 424 PV 425
V
Sbjct: 429 TV 430
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 70.3 bits (173), Expect = 5e-13
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 314 NLNIIADLNEIESLVQKSSSH-----TDVVFVPAFSGLYAPYWQRDARSIICGLTDETSK 368
++I A LN + D+ +P F G +P + R +I GLT +TS
Sbjct: 349 GISIYAYLNARLEELAAEKGSVAYLTRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSL 408
Query: 369 VDIVK---AALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
D+ + A L+A+ + TR I+EAM G ++ L GG++ N +QL AD TG PV
Sbjct: 409 DDLARLYLATLQAIAYGTRHIIEAMNAA-GHKIDTLFACGGLSKNPLFVQLHADATGLPV 467
>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial autoinducer-2 (AI-2) kinases and
similar proteins. AI-2 is a small chemical
quorum-sensing signal involved in interspecies
communication in bacteria. Cytoplasmic autoinducer-2
kinase, encoded by the lsrK gene from Salmonella
enterica serovar Typhimurium lsr (luxS regulated)
operon, is the prototypical member of this subfamily.
AI-2 kinase catalyzes the phosphorylation of
intracellular AI-2 to phospho-AI-2, which leads to the
inactivation of lsrR, the repressor of the lsr operon.
Members of this family are homologs of glycerol
kinase-like proteins and belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 452
Score = 64.4 bits (157), Expect = 3e-11
Identities = 87/427 (20%), Positives = 150/427 (35%), Gaps = 75/427 (17%)
Query: 36 DPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWS 95
DP V LV CI + L I P DI A+ T+ RE +++D G ++ A
Sbjct: 46 DPQVNWKLVCRCIRQA---LARSGIAPIDIAAVSATSMREGIVLYDQ-NGNEIW-ACANV 100
Query: 96 DVRTKSIVDTYASKIKNTTFLTTICGLPISTY---------FSAVKLNWLMDNVDEVKNA 146
D R V ++K L Y + +L WL + ++
Sbjct: 101 DARAAEEV----RELKE-----WEPDLEKEIYRSSGQTFALGALPRLLWLKQHRPDIYEK 151
Query: 147 IKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPS 206
+ W+++ L+G + + +NA T L +L+T W P++L +
Sbjct: 152 TAS----VTMISDWILYKLSGVL-----AVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRD 202
Query: 207 QILPQIRSSSEIYGCLKD------GPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGT 260
I P + + + G + + G G P+ GD Q +G ++ G GT
Sbjct: 203 DIFPPVVETGTVIGTVTNEAASETGLAAGTPVVAGGGDVQLGALGLGVVRPGDTAVLGGT 262
Query: 261 GCFLLYNTGTAIV----------HSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKW 310
+ N + H GL F G +W
Sbjct: 263 FWQQVVNITEPVTDPKMNIRVNPHVVPGLWQAETISF---------------FTGLVMRW 307
Query: 311 LRDNLNIIADL------NEIESLVQKSSSHTDV---VFVPAFSG-LYAPYWQRDARSIIC 360
RD L + L+++ +S V +P FS + W A S +
Sbjct: 308 FRDAFCAEEKLEAERLGIDTYELLEEMASRVPVGSYGIIPIFSDVMNYGTWYHAAPSFLN 367
Query: 361 G--LTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQA 418
++ + + +A E + L+ + + G + L+ GG + +K Q+ A
Sbjct: 368 LSLDPEKCGRATLFRALEENAAIVSAWNLDIITDFTGFEPDYLVFAGGASKSKLWSQILA 427
Query: 419 DLTGTPV 425
D+TG PV
Sbjct: 428 DVTGKPV 434
>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional.
Length = 470
Score = 63.9 bits (156), Expect = 6e-11
Identities = 82/409 (20%), Positives = 152/409 (37%), Gaps = 66/409 (16%)
Query: 40 ILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDST----TGKPLYNAIVWS 95
IL +C + L I I +T T D G LY I W
Sbjct: 52 ILQRFADCCRQINSEL-----TECHIRGITVT-----TFGVDGALVDKQGNLLYPIISWK 101
Query: 96 DVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFG 155
RT ++++ I L I G+ ++ + KL WL +N + L
Sbjct: 102 CPRTAAVMENIERYISAQQ-LQQISGVGAFSFNTLYKLVWLKENHPQ----------LLE 150
Query: 156 TVDSWL-IWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRS 214
+WL I +L G TD+T A + +++++ + P++L+ + ++ P++
Sbjct: 151 QAHAWLFISSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVE 210
Query: 215 SSEIYGCLKD------GPLQGVPISGILGDQQSALVGQSCLQAGQAKN----TYGTGCFL 264
+ E G L+ G G+P+ D Q AL G +G +N + GT L
Sbjct: 211 AGEQIGTLQPSAAALLGLPVGIPVISAGHDTQFALFG-----SGAGQNQPVLSSGTWEIL 265
Query: 265 LYNTG---TAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIAD- 320
+ + T+++ G + Q G P G +A +W+R
Sbjct: 266 MVRSAQVDTSLLSQYAGSTCELDSQSGLYNP------GMQWLASGVLEWVRKLFWTAETP 319
Query: 321 ----LNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAAL 376
+ E ++ + V + G+T T++ +AAL
Sbjct: 320 YQTMIEEARAIPPGADG---VKMQCDLLAC--------QNAGWQGVTLNTTRGHFYRAAL 368
Query: 377 EAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
E + Q + L+ +++ +LL+ GG + N Q++A++ P+
Sbjct: 369 EGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPI 417
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 63.8 bits (156), Expect = 6e-11
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 38/227 (16%)
Query: 225 GPLQGVPISGILGDQQSALVGQSCLQAGQAKNTYGT-GCFLLYNTGTAIVHSSQGLLTTV 283
G +G+ ++ D VG + G GT C ++ + G + +
Sbjct: 258 GLPEGIAVAVGAFDAHMGAVGAGA-EPGTLVKVIGTSTCDIM-------LAEKVGDVPGI 309
Query: 284 AYQF-GARAPITYALEGSIAVAGQT-----FKWLRDNLNIIADLNEIESLVQKSSSHTDV 337
G+ P E AGQ+ F W +NL L E E+ + +
Sbjct: 310 CGVVDGSIIPGYIGYE-----AGQSAVGDIFAWFVENLV--PSLYEEEAKRRGDEVLPLL 362
Query: 338 V-----FVPAFSGLYAPYWQRDARSI---------ICGLTDETSKVDIVKAALEAVCFQT 383
P SGL A W R++ I GLT +T +I +A +EA F
Sbjct: 363 SEKAAKLPPGESGLLALDWWNGNRTVLVDQRLTGLILGLTLQTKAEEIYRALIEATAFGA 422
Query: 384 RDILEAMKEDCGVALEKLLVDGGMTA-NKYLMQLQADLTGTPVSSSP 429
R I+E E+ GV +E+++ GG+ N LMQ+ AD+ P+
Sbjct: 423 RAIIERF-EEQGVPVERVIAAGGIAQKNPLLMQIYADVLNRPIKVVA 468
>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-fuculose kinases (FK, also known
as fuculokinase, EC 2.7.1.51), which catalyze the
ATP-dependent phosphorylation of L-fuculose to produce
L-fuculose-1-phosphate and ADP. The presence of Mg2+ or
Mn2+ is required for enzymatic activity. FKs belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 62.9 bits (153), Expect = 1e-10
Identities = 92/389 (23%), Positives = 151/389 (38%), Gaps = 55/389 (14%)
Query: 60 INPNDIVAIGITNQRETTIVWD----STTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTF 115
+N IVAI +T T D G LY I W RT ++ ++I +
Sbjct: 65 LNAKQIVAITVT-----TFGVDGAPVDKQGNQLYPIISWKCPRTAPVMKNIENEIDRLS- 118
Query: 116 LTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHI 175
L I G+ ++ + KL WL +N ++ K +K +F + S L LTG
Sbjct: 119 LYQINGVGAYSFNTLYKLVWLKENHPQLLE--KMHKFVF--ISSMLTHRLTG-----EFT 169
Query: 176 TDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQG 229
TD T A +++ +L + W P +L + + ++ P + + E G L G G
Sbjct: 170 TDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFPPLVDAGEKIGLLTTEAAQLLGLPAG 229
Query: 230 VPISGILGDQQSALVGQSCLQAGQAKN----TYGTGCFLLYNTG---TAIVHSSQGLLTT 282
+P+ D Q AL G +G +N + GT L+ + QGL
Sbjct: 230 IPVISAGHDTQFALFG-----SGAEQNQPVLSSGTWEILMARSAQAELDRESLEQGLTVE 284
Query: 283 VAYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNE------IESLVQKSSSHTD 336
+ Q G P L + +W+ + IE +
Sbjct: 285 LDAQSGLYNPAIQWLGSGV------IEWVGKLFFSAEYGSGELYQTMIEEAEKAGPGADG 338
Query: 337 VVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGV 396
V F P F L D I GL+ T++ I +AALE + Q + L+ +++
Sbjct: 339 VNFEPDFLQL------GDGNGSIEGLSLHTTRGHIYRAALEGLTNQLKRNLDYLEQVGQF 392
Query: 397 ALEKLLVDGGMTANKYLMQLQADLTGTPV 425
+ L++ GG + N Q++AD P+
Sbjct: 393 KAKPLILVGGGSKNTLWNQIRADALQIPL 421
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation of
sedoheptulose to produce sedoheptulose 7-phosphate and
ADP. The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subfamily belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 62.7 bits (153), Expect = 1e-10
Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 43/225 (19%)
Query: 34 EQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWD-----------S 82
EQD IL ++ C+++ L+ + AIG+T Q ++W S
Sbjct: 46 EQDVDKILSTLDSCLKRLPKELLK------KVKAIGVTGQMHGIVLWKQDQSCEDGDLIS 99
Query: 83 TTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTI----CGLPISTYFSAVKLNWLMD 138
T P+ N W D R + FL ++ LPI T F L WL
Sbjct: 100 ITNTPVSNLYTWQDGRC------------SEDFLKSLPKPQSHLPIHTGFGCATLFWLQK 147
Query: 139 NVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQL 198
N E ++ GT+ +++ L G + NA+ +L T W ++
Sbjct: 148 NGPEF---LESFDHC-GTIQDFVVAMLCGLSRP---VMSPHNAASWGYFDLETNAWNSEI 200
Query: 199 LKFFNIPSQILPQIRSSSEIYGCLKD---GPLQGVPISGILGDQQ 240
L+ P +LP++ I G L G +G P+ LGD Q
Sbjct: 201 LQAAGFPVHLLPEVVPPGTIAGTLGGDWYGIPKGTPVGVALGDLQ 245
>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase. Members of this family
are L-fuculokinase, from the clade that includes the
L-fuculokinase of Escherichia coli. This enzyme
catalyzes the second step in fucose catabolism. This
family belongs to FGGY family of carbohydrate kinases
(pfam02782, pfam00370). It is encoded by the kinase (K)
gene of the fucose (fuc) operon [Energy metabolism,
Sugars].
Length = 465
Score = 60.7 bits (147), Expect = 6e-10
Identities = 85/386 (22%), Positives = 152/386 (39%), Gaps = 36/386 (9%)
Query: 53 GYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKN 112
++ ++ I I +T +D G LY I W RT ++D +
Sbjct: 59 CQQINSELTEKHIRGIAVTTFGVDGAPFDKQ-GNQLYPIISWKCPRTAPVMDNIERLLDA 117
Query: 113 TTFLTTICGLPISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGG 172
L I G+ ++ + KL WL ++ ++ + +K +F + S + LTG
Sbjct: 118 QR-LYAINGIGAYSFNTLYKLVWLKEHHPQLFE--RMHKFVF--ISSMITHRLTG----- 167
Query: 173 LHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQ---- 228
TD+T A +++ +L W PQ+L+ + ++ P + + E G L++
Sbjct: 168 EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLGL 227
Query: 229 --GVPISGILGDQQSALVGQSCLQAGQAKNTYGTGCFLLYNTG---TAIVHSSQGLLTTV 283
GVP+ D Q AL G Q Q + GT L+ + T+++ G +
Sbjct: 228 PVGVPVISAGHDTQFALFGSGAEQ-NQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCEL 286
Query: 284 AYQFGARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAF 343
Q G P +A +W+R + Q ++
Sbjct: 287 DSQAGLYNP------AMQWLASGVLEWVRKLF--FTAETPSDHYYQMMIEEARLIA-NGA 337
Query: 344 SGLYAPYWQRDARSI----ICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALE 399
G +Q D S I GLT T++ I +AALE + Q + L+ +++
Sbjct: 338 DG--VVNFQCDLLSCGQGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKAS 395
Query: 400 KLLVDGGMTANKYLMQLQADLTGTPV 425
+LL+ GG + N Q++A++ PV
Sbjct: 396 ELLLVGGGSKNTLWNQIRANMLDIPV 421
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 57.9 bits (141), Expect = 5e-09
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 295 YALEGSIAVAGQT-----FKWLRDNL--------------NIIADLNEIESLVQKSSSHT 335
E AGQ+ F W L ++ L E + ++
Sbjct: 325 IGYE-----AGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTE--AAAKQPPGEH 377
Query: 336 DVVFVPAFSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCG 395
+V + F+G P + + +I GLT T DI +A +EA F TR I+E ED G
Sbjct: 378 GLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECF-EDQG 436
Query: 396 VALEKLLVDGGM-TANKYLMQLQADLTGTPVS 426
V +E+++ GG+ N LMQ+ AD+ P+
Sbjct: 437 VPVEEVIAAGGIARKNPVLMQIYADVLNRPIQ 468
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 56.9 bits (137), Expect = 1e-08
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 343 FSGLYAPYWQRDARSIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLL 402
F+G +P + + +I GLT T + +A +EA F TR I+E + GV +E+L+
Sbjct: 382 FNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTDS-GVPVEELM 440
Query: 403 VDGGMT-ANKYLMQLQADLTGTPVS 426
GG+ N +MQ+ AD+T P+
Sbjct: 441 AAGGIARKNPVIMQIYADVTNRPLQ 465
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 56.7 bits (138), Expect = 1e-08
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 85 GKPLYNAIVWSDVRTKSIVDTYASKI-KNTTFLTT-ICGLPISTYFS--AVKLN--WLMD 138
G+ L N + D RT +++ +I K + T I +P +T + A+K L++
Sbjct: 87 GELLGNPYHYRDPRTDGVMEEVFERIPKEELYERTGIQFMPFNTLYQLYALKKEGPELLE 146
Query: 139 NVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQL 198
D K L + L + LTG + + TNAS T L++ RT W+ +L
Sbjct: 147 KAD---------KLLM--IPDLLNYLLTGVK-----VNEYTNASTTQLLDPRTRDWDTEL 190
Query: 199 LKFFNIPSQILPQIRSSSEIYGCLKD 224
L+ IP ++ P + + G LK
Sbjct: 191 LEKLGIPEELFPPLVEPGTVLGPLKP 216
Score = 40.2 bits (95), Expect = 0.002
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSP 429
+I + E++ + R LE ++E G +E + + GG + N+ L QL AD TG PV + P
Sbjct: 369 EIARCIYESLALKYRRTLEELEELTGKKIEVIHIVGGGSRNELLNQLTADATGIPVVAGP 428
Query: 430 I 430
+
Sbjct: 429 V 429
>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup consists of uncharacterized hypothetical
bacterial proteins with similarity to bacterial
autoinducer-2 (AI-2) kinases, which catalyzes the
phosphorylation of intracellular AI-2 to phospho-AI-2,
leading to the inactivation of lsrR, the repressor of
the lsr operon. Members of this subgroup belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 437
Score = 51.9 bits (124), Expect = 3e-07
Identities = 74/385 (19%), Positives = 135/385 (35%), Gaps = 59/385 (15%)
Query: 64 DIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLP 123
++ I T+QR+ ++ + GK + + D R + + + I++ + G
Sbjct: 69 PVIGITSTSQRQGIVLINKV-GKA-FLGLPNIDNRGRE----WEAGIEDREEIYEKTGRL 122
Query: 124 ISTYFSAVKLNWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASR 183
+ FSA KL L + I ++ W+ L+G + + + + A
Sbjct: 123 PTALFSAAKLMGLKKRQPSLWAGIAK----ITSISDWVTEMLSGIL-----VYEPSQACE 173
Query: 184 TLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKD------GPLQGVPISGILG 237
TLL ++ + +W +L F I ILP++ + G +K G + + G
Sbjct: 174 TLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLGKIKKEMADELGLSEDAEVIAGGG 233
Query: 238 DQQSAL------VGQSCLQAGQ----AKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQF 287
D Q AL VG + +G K T H+ G
Sbjct: 234 DTQLALKSVGAGVGDIVIVSGTTTPITKITDYKYYDKQERAWLN-CHTGGG--------- 283
Query: 288 GARAPITYALEGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLY 347
T+ +E + V G ++ L+ +E + K D A
Sbjct: 284 ------TWLVETNPGVTGLNYQKLKAIFYPNESYEVMEEEIAKLQKT-DHACTAALGSYL 336
Query: 348 APYWQRDARSIICG-------LTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEK 400
+ + ++ G L+ + V AAL + F + ++ E G +
Sbjct: 337 SS----EKNALKKGGFVFDAPLSTTLKRAHFVWAALAEIAFSIKWNYRSLTEVTGFEKDY 392
Query: 401 LLVDGGMTANKYLMQLQADLTGTPV 425
+LV GG +K L Q ADL +
Sbjct: 393 VLVCGGGFQSKALTQHLADLLQKKL 417
>gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase. This model describes
rhamnulokinase, an enzyme that catalyzes the second step
in rhamnose catabolism.
Length = 454
Score = 46.7 bits (111), Expect = 2e-05
Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 32/267 (11%)
Query: 179 TNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPLQGVPISGILG- 237
TNA+ T L+N+ T W+ LL + +P+ + + G + +P+ +
Sbjct: 171 TNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQGNQIPVVAVATH 230
Query: 238 DQQSALVGQSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYAL 297
D SA+V A + GT + + + T I + Q L + + GA Y +
Sbjct: 231 DTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITN-EQALAANITNEGGADG--RYRV 287
Query: 298 EGSIAVAGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARS 357
+I WL + D+N++ +L++++ + PAF + P D R
Sbjct: 288 LKNIMGL-----WLLQRVCRERDINDLPALIEQAQAL------PAFKSIINP---NDDRF 333
Query: 358 I-----------ICGLTDET---SKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLV 403
I C T++ S ++ + +++ R +L + E G + +L +
Sbjct: 334 INPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHI 393
Query: 404 DGGMTANKYLMQLQADLTGTPVSSSPI 430
GG + N +L QL AD G V + P+
Sbjct: 394 VGGGSQNAFLNQLCADACGIRVIAGPV 420
>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.
Length = 520
Score = 45.8 bits (109), Expect = 3e-05
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 36/227 (15%)
Query: 42 HLVEECIEKCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKPLYNAIVWSDVRT-- 99
L +CI + L I +DI A+ T+ RE +++D G ++ A D R
Sbjct: 55 QLACQCIRQA---LQKAGIPASDIAAVSATSMREGIVLYDRN-GTEIW-ACANVDARASR 109
Query: 100 -----KSIVDTYASKIKNTTFLTTICG-LPISTYFSAVKLNWLMDNVDEVKNAIKDNKCL 153
K + + + ++ + T G LP +L WL + ++
Sbjct: 110 EVSELKELHNNFEEEVYRCSGQTLALGALP--------RLLWLAHHRPDIYRQAHT---- 157
Query: 154 FGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQWEPQLLKFFNIPSQILPQIR 213
+ W+ + L+G + D +NA T L++L T W+P LL+ + + ILP ++
Sbjct: 158 ITMISDWIAYMLSGELA-----VDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVK 212
Query: 214 SSSEIYGCLKD------GPLQGVPISGILGDQQSALVGQSCLQAGQA 254
+ + G + G G P+ GD Q +G ++ GQ
Sbjct: 213 ETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPGQT 259
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 384 RDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPVSSSPI 430
D+L + + G +L + GG N L QL AD G V + P+
Sbjct: 362 ADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGPV 408
Score = 28.9 bits (65), Expect = 5.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 179 TNASRTLLMNLRTLQWEPQLLKFFNIP 205
TNA+ T L+N+ + W+ LL + P
Sbjct: 159 TNATTTQLVNINSDDWDESLLAWSGAP 185
>gnl|CDD|222556 pfam14121, DUF4289, Domain of unknown function (DUF4289). This
family of membrane bet-barrel proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
655 and 722 amino acids in length. SRU_1264 is
identified by Gene3D as a membrane bound beta-barrel.
Length = 618
Score = 30.3 bits (69), Expect = 2.4
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 304 AGQTFKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSG 345
Q FK + +L+ N + QKSS+ DV+ VP
Sbjct: 475 LRQDFKLGKFHLD-----NTV--TYQKSSNGEDVLPVPELVT 509
>gnl|CDD|239163 cd02762, MopB_1, The MopB_1 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 539
Score = 29.7 bits (67), Expect = 3.4
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 152 CLFGTVDSWL---IWNLTGGVD--GGLHITD--VTNASRTLLMNLRTLQWEPQLLKFFNI 204
LFGT+ SWL + LTG +D GG T + +T + +W ++ I
Sbjct: 298 QLFGTLCSWLVKLLNLLTGNLDRPGGAMFTTPALDLVGQTSGRTIGRGEWRSRVSGLPEI 357
Query: 205 PSQILPQIRSSSEIYGCLKDGPLQ 228
LP + EI L DGP +
Sbjct: 358 AG-ELPVNVLAEEI---LTDGPGR 377
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 29.4 bits (67), Expect = 4.3
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 310 WLRD-NLNIIADLNE-IESLVQKSSSHTDVVFVPAFS 344
+LRD L ++ L + +L+ ++ H D + P ++
Sbjct: 98 YLRDALLELLELLLDLQRALLDRAEEHADTIM-PGYT 133
>gnl|CDD|206130 pfam13960, DUF4218, Domain of unknown function (DUF4218).
Length = 129
Score = 27.9 bits (63), Expect = 4.9
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 43 LVEECIEKCVGYLVDLDINPNDIVAIGITNQR 74
+ EE IE C YL D V IG R
Sbjct: 100 ITEEAIEFCSDYLSDG-------VTIGNPVPR 124
>gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 565
Score = 29.0 bits (66), Expect = 5.6
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 167 GGVDGGLHITDVT 179
GGVDG LHITD++
Sbjct: 222 GGVDGLLHITDIS 234
>gnl|CDD|216131 pfam00811, Ependymin, Ependymin.
Length = 133
Score = 27.7 bits (62), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 114 TFLTTICG-LPISTYFSAVKLNWLMDNVDEVKNAIKD 149
T TT CG LP+S ++ K + L+ + +V IKD
Sbjct: 87 TLTTTSCGCLPVSETYTTDKNDTLIFSFFDVVTGIKD 123
>gnl|CDD|182504 PRK10507, PRK10507, bifunctional glutathionylspermidine
amidase/glutathionylspermidine synthetase; Provisional.
Length = 619
Score = 28.5 bits (64), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 196 PQLLKFFNIPSQILPQIRSS 215
LL F+IP + P++R S
Sbjct: 285 DNLLALFDIPKILWPRLRLS 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,360,634
Number of extensions: 2042777
Number of successful extensions: 1999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1820
Number of HSP's successfully gapped: 76
Length of query: 431
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 331
Effective length of database: 6,502,202
Effective search space: 2152228862
Effective search space used: 2152228862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)