RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1586
(431 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 203 bits (518), Expect = 1e-63
Identities = 102/235 (43%), Positives = 144/235 (61%), Gaps = 9/235 (3%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
+++ + E E + PK GWVE DPM I + + + DI+ + I AIGITNQ
Sbjct: 25 NIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKA---DISSDQIAAIGITNQ 81
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
RETTIVW+ TGKP+YNAIVW RT I + ++ + GL I YFS K+
Sbjct: 82 RETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLED-YIRSNTGLVIDPYFSGTKV 140
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
W++D+V+ + + + LFGTVD+WLIW +T G +H+TD TNASRT+L N+ TL
Sbjct: 141 KWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGR---VHVTDYTNASRTMLFNIHTLD 197
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCLKD--GPLQGVPISGILGDQQSALVGQ 246
W+ ++L+ +IP ++LP++R SSE+YG +PISGI GDQQ+AL GQ
Sbjct: 198 WDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGGTRIPISGIAGDQQAALFGQ 252
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 196 bits (498), Expect = 7e-61
Identities = 97/235 (41%), Positives = 136/235 (57%), Gaps = 9/235 (3%)
Query: 14 ELLTYHKVELETLTPKEGWVEQDPMVILHLVEECIEKCVGYLVDLDINPNDIVAIGITNQ 73
+ + + E PK GWVE + I + V+ I I P I IGITNQ
Sbjct: 23 KKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIES---GIRPEAIAGIGITNQ 79
Query: 74 RETTIVWDSTTGKPLYNAIVWSDVRTKSIVDTYASKIKNTTFLTTICGLPISTYFSAVKL 133
RETT+VWD TTG+P+ NAIVW ++ I D GL I YFSA K+
Sbjct: 80 RETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHE-KTGLVIDAYFSATKV 138
Query: 134 NWLMDNVDEVKNAIKDNKCLFGTVDSWLIWNLTGGVDGGLHITDVTNASRTLLMNLRTLQ 193
WL+DN++ + + + LFGT+DSWL+W LT G +H+TD +NASRT+L N+ L+
Sbjct: 139 RWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDG---QVHVTDYSNASRTMLYNIHKLE 195
Query: 194 WEPQLLKFFNIPSQILPQIRSSSEIYGCLKDGPL--QGVPISGILGDQQSALVGQ 246
W+ ++L NIPS +LP+++S+SE+YG + VPI+G+ GDQQ+AL GQ
Sbjct: 196 WDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIAGMAGDQQAALFGQ 250
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 150 bits (378), Expect = 3e-43
Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Query: 248 CLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQT 307
C++ G AKNTYGTGCF+L NTG V S GLLTT+A + YALEG++ +AG +
Sbjct: 2 CVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTG--EVNYALEGAVFMAGAS 59
Query: 308 FKWLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETS 367
+WLRD + +I D + E K + V VPAF+GL APYW AR I GLT +
Sbjct: 60 IQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVN 119
Query: 368 KVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLTGTPV 425
I++A LE++ +QTRD+LEAM+ D G+ L L VDGG AN +LMQ Q+D+ GT V
Sbjct: 120 ANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRV 177
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 235
Score = 146 bits (369), Expect = 4e-42
Identities = 79/170 (46%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 250 QAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAGQTFK 309
+ G KNTYGTG F++ NTG S LLTT+ Y + + YALEGSI VAG +
Sbjct: 2 EKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQ 59
Query: 310 WLRDNLNIIADLNEIESLVQKSSSHTDVVFVPAFSGLYAPYWQRDARSIICGLTDETSKV 369
WLRD L +I + E L K+ +V VPAF+GL APYW +AR + GLT T+K
Sbjct: 60 WLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKE 119
Query: 370 DIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQAD 419
D V+A L+AV +Q++D+++ MK+D G+ + L VDGG N LMQ QAD
Sbjct: 120 DFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQAD 169
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 42.1 bits (98), Expect = 6e-05
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 357 SIICGLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQL 416
+I L+ T K+DI+ +V + + + +++ GG+ N +
Sbjct: 172 EVISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVK-----DVVMTGGVAQNYGVRGA 226
Query: 417 QADLTGTPVSSSPIG 431
+ G + +SP+
Sbjct: 227 LEEGLGVEIKTSPLA 241
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.8 bits (67), Expect = 0.68
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 361 GLTDETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADL 420
++E SKVD + A + +IL+ + E A L ++ M +YL Q
Sbjct: 59 VESEELSKVD---NQIGASIGKIIEILQGLNETSTNAYRTLPIN-NMPVPEYLENFQWQT 114
Query: 421 TGTPVSSS 428
+ S
Sbjct: 115 RKFKLDKS 122
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 50 KCVGYLVDLDINPNDIVAIGITNQRETTIVWDSTTGKPL 88
+ V LV + ++ +D +V D+ TG
Sbjct: 270 QKVEPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 27.0 bits (60), Expect = 1.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 349 PYWQRDARSIICGLTDETSKVDIVKAALEA 378
W + I+CG+T+ T+ ++V A +A
Sbjct: 4 KVWVDGVQRIVCGVTEVTTCQEVVIALAQA 33
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 28.8 bits (64), Expect = 1.2
Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 16/165 (9%)
Query: 246 QSCLQAGQAKNTYGTGCFLLYNTGTAIVHSSQGLLTTVAYQFGARAPITYALEGSIAVAG 305
++ + + G + + + + R I Y + VA
Sbjct: 88 ETWFRNQLGGRYHTVGSATVVDLQRCLEEKT----------IECRDGIRYIIHVPTVVAP 137
Query: 306 QTFKWLRDNLNIIAD---LNEIESLVQKSSSHTDVVFVPAFS-GLYAPYWQRDARSIICG 361
+ N N + + + S D + +P G +S+
Sbjct: 138 SAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFA 197
Query: 362 LTD--ETSKVDIVKAALEAVCFQTRDILEAMKEDCGVALEKLLVD 404
L + + + + E C + +KL +D
Sbjct: 198 LRLYMAGDHISKELKNVLIMYYLQYPFEPFFPESCKIECQKLGID 242
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc
{Lactobacillus plantarum [TaxId: 1590]}
Length = 178
Score = 27.8 bits (62), Expect = 1.8
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 39/107 (36%)
Query: 344 SGLYAPYWQRDARSIICGLTDETSKV--------------DIVKAAL------------- 376
G+ A W D ++ I LT+ K+ + L
Sbjct: 42 GGMVAGRWVTDQKADIVMLTEGIYKISWTEPTGTDVALDFMPNEKKLHGTIFFPKWVEEH 101
Query: 377 --EAVCFQTRDILEAMKEDCGVALEKLLVDGGMTANKYLMQLQADLT 421
V +Q + ++ M++ + T K ++ A++T
Sbjct: 102 PEITVTYQ-NEHIDLMEQ---------SREKYATYPKLVVPEFANIT 138
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 26.7 bits (59), Expect = 5.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 175 ITDVTNASRTL-LMNLRTLQW---EPQLLKFFNIPSQILPQIRSS 215
++ A+ L LM L + LL F+IP + P++R S
Sbjct: 60 EQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLS 104
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 26.3 bits (58), Expect = 7.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 149 DNKCLFGTVDSWLIWNLTGGVDGGLHIT 176
D+K L+ V+ +L + LT G H+
Sbjct: 96 DHKTLYYDVEPFLFYVLTQNDVKGCHLV 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,536,632
Number of extensions: 69685
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 15
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)