Query psy15864
Match_columns 553
No_of_seqs 750 out of 3676
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 23:18:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.6E-32 1.9E-36 282.9 17.4 331 89-439 131-482 (491)
2 4gc0_A D-xylose-proton symport 99.9 3.4E-22 1.1E-26 208.7 7.5 162 274-436 59-242 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.8 1.5E-21 5.2E-26 201.2 6.9 296 87-417 122-431 (451)
4 3o7q_A L-fucose-proton symport 99.8 4E-19 1.4E-23 182.3 17.1 266 89-412 122-425 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.8 7E-18 2.4E-22 175.9 16.3 330 88-425 112-477 (491)
6 2cfq_A Lactose permease; trans 99.7 1E-17 3.5E-22 170.8 3.4 263 114-426 134-406 (417)
7 2gfp_A EMRD, multidrug resista 99.6 3E-17 1E-21 164.8 2.5 252 90-398 94-355 (375)
8 2xut_A Proton/peptide symporte 99.6 7.3E-15 2.5E-19 154.3 10.7 75 89-163 114-197 (524)
9 1pw4_A Glycerol-3-phosphate tr 99.4 3.1E-13 1.1E-17 138.8 11.1 183 236-425 28-212 (451)
10 3o7q_A L-fucose-proton symport 99.4 6.2E-13 2.1E-17 136.1 12.7 151 240-397 30-182 (438)
11 2gfp_A EMRD, multidrug resista 99.4 3.2E-13 1.1E-17 135.3 10.3 171 246-426 10-181 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2.1E-12 7.3E-17 134.2 13.0 167 246-422 23-199 (491)
13 2xut_A Proton/peptide symporte 99.3 1.5E-11 5.1E-16 129.0 13.0 156 252-417 28-196 (524)
14 2cfq_A Lactose permease; trans 98.6 3.3E-09 1.1E-13 107.6 -0.3 152 247-408 18-176 (417)
15 3ff5_A PEX14P, peroxisomal bio 39.9 9 0.00031 25.1 0.8 16 495-510 38-53 (54)
16 2w84_A Peroxisomal membrane pr 36.7 11 0.00036 26.2 0.8 17 495-511 43-59 (70)
17 3mmy_B Nuclear pore complex pr 29.1 23 0.0008 23.2 1.4 17 489-505 31-47 (56)
18 3arc_T Photosystem II reaction 24.3 79 0.0027 18.0 2.8 12 159-170 18-29 (32)
19 2yy3_A Elongation factor 1-bet 21.6 86 0.003 23.1 3.5 25 486-510 52-76 (91)
20 1b6a_A Methionine aminopeptida 20.1 27 0.00094 34.8 0.7 11 500-510 402-412 (478)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=5.6e-32 Score=282.90 Aligned_cols=331 Identities=23% Similarity=0.393 Sum_probs=246.9
Q ss_pred ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc------------chHHHHHHHHHHH
Q psy15864 89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------------HWRSAAILNLLFP 154 (553)
Q Consensus 89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l------------gWr~~f~i~~i~~ 154 (553)
-+|+++|+|.+ .+++++|++|++|+++|++..++.+.+..+|.+++++++... .||+++.+.++++
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 47999998754 678889999999999999999999999999999888776432 6999999999999
Q ss_pred HHHHHHhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcch
Q psy15864 155 ILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFL 234 (553)
Q Consensus 155 li~~i~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (553)
++.+++.+++||||+|+..+++.+++.+.+++...... ...+..+........+. .... ......
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~ 275 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL---ATQAVQEIKHSLDHGRK----------TGGR--LLMFGV 275 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------HTTH--HHHSCC
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch---hHHHHHHHHHHHHhhhh----------hhhH--HHHhcc
Confidence 99999999999999999999999999988877643211 11111111111111110 0001 111123
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHH
Q psy15864 235 LPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAAC 313 (553)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~ 313 (553)
++..+......+.++.+.+.+.+|.+.+....+..... .....+.++..++++++++++.||+|||+.++.+..++.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 34455566667777888888889999988877665433 35566778889999999999999999999999888888877
Q ss_pred HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q psy15864 314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML 393 (553)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~ 393 (553)
.+.++..... ....+..++..+++..+++.++.+++++|.+|++|++.|++++|+...++++++++++.+++.+.
T Consensus 356 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~ 430 (491)
T 4gc0_A 356 MFSLGTAFYT-----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD 430 (491)
T ss_dssp HHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHhc-----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766654331 22333444445555556667777888899999999999999999999999999999998877654
Q ss_pred h------hccchhhHHHHHHHHHHHHhhheEEcccCCCCChHHHHHHHhccC
Q psy15864 394 D------TFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEEHFADKG 439 (553)
Q Consensus 394 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~ 439 (553)
+ ..+....++++++++++..++.++++|||+|+++||++++++.+.
T Consensus 431 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 431 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 3 234455677888888888888889999999999999998876554
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.85 E-value=3.4e-22 Score=208.67 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcc---------cCCCCChhHHHHHHHHHH
Q psy15864 274 FATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLS---------YGWDSPLVPTVFLVLAAF 344 (553)
Q Consensus 274 ~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 344 (553)
+..+...+|.++|++++|+++||+|||++++++.++++++.++.++....... ..+.+.+.+++++++.|+
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 45556778999999999999999999999999999999998887742110000 014567788999999999
Q ss_pred HHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhc-------cchhhHHHHHHHHHHHHhhhe
Q psy15864 345 LTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTF-------HLWGTLYFYAAISVVGTLYMY 417 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~ 417 (553)
+.|......+ +|++|.+|++.|+...++.+....++..+++.+........ .+|+.+.....+..+..++..
T Consensus 139 g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 9877776554 99999999999999999888877777776665555443321 234555555666666667777
Q ss_pred EEcccC------CCCChHHHHHHHh
Q psy15864 418 FVMPET------EGRTLRDIEEHFA 436 (553)
Q Consensus 418 ~~~pet------~~~~~~~~~~~~~ 436 (553)
+++||+ +++..++.+.+.+
T Consensus 218 ~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 218 YTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCCChHHHHHcCchhHHHHhHHH
Confidence 889998 5555555554443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.83 E-value=1.5e-21 Score=201.24 Aligned_cols=296 Identities=15% Similarity=0.110 Sum_probs=193.1
Q ss_pred ccccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----c-hHHHHHHHHHHHHHHHH
Q psy15864 87 EEKGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----H-WRSAAILNLLFPILALC 159 (553)
Q Consensus 87 ~~~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----g-Wr~~f~i~~i~~li~~i 159 (553)
---.|+++|++.+ .+...+++.|++|+++|++++++...+..+|.++++++++.+ + ||++|++.++++++..+
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~ 201 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3456888888754 456779999999999999999999999999999999888764 7 99999999988877654
Q ss_pred -HhccccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHH
Q psy15864 160 -ALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYA 238 (553)
Q Consensus 160 -~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (553)
.++++||+|+........+. ......+ ... .. .... .......+...+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~----~~----~~~~---~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 202 FAFAMMRDTPQSCGLPPIEEY-------------KNDYPDD---YNE----KA----EQEL---TAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHHCCCSSTTTCCCSCTTT-------------CCC---------------------------CCTHHHHHHTSSCHHH
T ss_pred HHHhhccCCHhhcCCCChhhh-------------ccccccc---chh----hh----hccc---ccccchHHHHHcCHHH
Confidence 44568888764321111000 0000000 000 00 0000 0000111112222333
Q ss_pred HHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhccc--CCcceeecchhHHH-HH
Q psy15864 239 IVTSLFFIGQFGGMTTLQTYAVGIFES-IHAPLD-PYFATLLLGVAELGGALLCVVLIHYT--GKRPLALISTGGSA-AC 313 (553)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~--Grr~~l~~~~~~~~-i~ 313 (553)
+...+..+........+..+.|.++.. .+.+.. ..+...+.+++.+++.+++|+++||+ |||+.+.++.++.. ++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 344444444555566677788888766 565543 34667778899999999999999999 99988776665554 33
Q ss_pred HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHH
Q psy15864 314 FIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYI-FAFAVNKLYYPM 392 (553)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-~~~i~~~~~~~~ 392 (553)
.+++.+. ...+.+..++..++.+++.+... +..+.++.|.+|++.||++.|+.+.+..+ ++.++|.+.+.+
T Consensus 335 ~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l 406 (451)
T 1pw4_A 335 TIVYWMN-------PAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406 (451)
T ss_dssp HHHTTSC-------CTTCHHHHHHHHHHHHHHHTHHH-HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-------cccCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332220 01244455555566666554444 33358889999999999999999999999 999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHhhhe
Q psy15864 393 LDTFHLWGTLYFYAAISVVGTLYMY 417 (553)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~~~~~ 417 (553)
.+..++...+++.+++.++..++.+
T Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 407 VDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9988876666666666665555443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.80 E-value=4e-19 Score=182.34 Aligned_cols=266 Identities=13% Similarity=-0.006 Sum_probs=177.8
Q ss_pred ccccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc-----c-------------------
Q psy15864 89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----H------------------- 142 (553)
Q Consensus 89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l-----g------------------- 142 (553)
-+|+++|++.+ .+...++++|++|+++|++++++...+..+|.+++++++..+ +
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 46888888765 456779999999999999999999999999999999988765 2
Q ss_pred ------hHHHHHHHHHHHHHHHHHhcc--ccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHh
Q psy15864 143 ------WRSAAILNLLFPILALCALYF--IPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKR 214 (553)
Q Consensus 143 ------Wr~~f~i~~i~~li~~i~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (553)
||+.|++.+++.++..++.++ .||+++....+.+. .
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------------~-------------------- 245 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----------------G-------------------- 245 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----------------T--------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc----------------c--------------------
Confidence 999998887777666444333 56665321000000 0
Q ss_pred cCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHH-HHhh-CCCCC-hHHHHHHHHHHHHHHHHHHh
Q psy15864 215 LGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGI-FESI-HAPLD-PYFATLLLGVAELGGALLCV 291 (553)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~-~~~~~~~~~i~~~~g~~~~g 291 (553)
.....++.+++.+..+ ...+..+........+..++|.+ +++. +.+.. ..+...+..++.+++.+++|
T Consensus 246 -----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 246 -----SFSASLSRLARIRHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp -----SHHHHHHHHTTCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----chhhhHHHHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122223322222 22222333334445556677777 6554 65533 34666677889999999999
Q ss_pred hhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864 292 VLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS 371 (553)
Q Consensus 292 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~ 371 (553)
+++||+|||+++.++.++.+++.+++.+ ..+.+. ++..++.+++.+... +..+.+..|.+|++ |+.+.
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAF---------AGGHVG-LIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHH---------CCHHHH-HHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHH---------cCCcHH-HHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchh
Confidence 9999999999988888777776665554 333333 334455666655444 44568888999977 88888
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhcc-chhhHHHHHHHHHHH
Q psy15864 372 GASGSSSYIFAFAVNKLYYPMLDTFH-LWGTLYFYAAISVVG 412 (553)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 412 (553)
++.. +..+++.++|.+.+.+.+..+ +...+.+.+++.++.
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 8876 677999999999999999888 665555544443333
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.76 E-value=7e-18 Score=175.87 Aligned_cols=330 Identities=12% Similarity=-0.009 Sum_probs=178.9
Q ss_pred cccccccccccc--chhhhhhhhhccCccc--ccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH
Q psy15864 88 EKGTFLYKMAAP--LVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC 159 (553)
Q Consensus 88 ~~gr~~~G~ga~--~~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i 159 (553)
--+|+++|++.+ .+...++++|++|+++ |+.+.+++..+..+|.++++.+++.+ |||++|++.+++.++.++
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 346888888755 4577899999999988 77788888999999999999888775 899999998877766655
Q ss_pred Hhccc-cCCc----eeeeecCChHHHHHHHHH----------------HcCCCCCcchHHHHHHHHHHHHHHHHHhcCCC
Q psy15864 160 ALYFI-PESP----HWLISQGRMQEASASLCW----------------LRGWVTPDKVQTELSQITKAIEESELKRLGKD 218 (553)
Q Consensus 160 ~~~~l-pEsp----~~l~~~~~~~~a~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (553)
+.++. ++.. .......+.++..+..+. .....+.+........................
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence 44332 2211 101111122333322221 11111111100000000000000000000000
Q ss_pred CCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHh-hCCC-CChHHHHHHHHHHHHHHHHHHhhhhcc
Q psy15864 219 GQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFES-IHAP-LDPYFATLLLGVAELGGALLCVVLIHY 296 (553)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr 296 (553)
.. .. ....++... .+...+..+..+..+.....+++.+... .+.+ ....+...+..++.+++.++.++++||
T Consensus 272 ~~--~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 272 VK--VT-STEHLRVVS---YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -------------CTT---HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred cc--cc-HHHHHHHHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 00 00 000011111 1111111222222233333444555443 3333 334456667778888889999999999
Q ss_pred cCCcceee-----cchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhh
Q psy15864 297 TGKRPLAL-----ISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATAS 371 (553)
Q Consensus 297 ~Grr~~l~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~ 371 (553)
+|||+... +++++.+++.+++.............+.+..++..++.+++.+... +..++++.|.+|++.||+++
T Consensus 346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSST
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHH
Confidence 99998766 5555555555554443221111112345555556666666554443 44568999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864 372 GASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPETEG 425 (553)
Q Consensus 372 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~ 425 (553)
|+.+....+++++++.+.+.+.+. +....+.++++++++..++.+++.++.++
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776543 44556666666666666666666665543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.67 E-value=1e-17 Score=170.81 Aligned_cols=263 Identities=13% Similarity=0.053 Sum_probs=151.0
Q ss_pred ccccchhchhhhhHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHhcccc-CCceeeeecCChHHHHHHHHHHcC
Q psy15864 114 HLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYFIP-ESPHWLISQGRMQEASASLCWLRG 189 (553)
Q Consensus 114 ~~Rg~~~~~~~~~~~lG~~l~~~l~~~l---gWr~~f~i~~i~~li~~i~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~ 189 (553)
++|+...+....+..+|..+++.+++++ +||+.|++.++++++.++++++.+ |+|+.. ...+.+ .
T Consensus 134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~ 202 (417)
T 2cfq_A 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVANAV----------G 202 (417)
T ss_dssp HHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSSSSS----------S
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccccc-cccccc----------c
Confidence 4567777777777777777777776655 899999988877666655555544 443210 000000 0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHHHHHHHhhhhhHHHHhhHHHHHHhh-CC
Q psy15864 190 WVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESI-HA 268 (553)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 268 (553)
... .......+..+++.+..+...+.. +.....+..+..+.|.++... +.
T Consensus 203 -~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
T 2cfq_A 203 -ANH------------------------SAFSLKLALELFRQPKLWFLSLYV----IGVSCTYDVFDQQFANFFTSFFAT 253 (417)
T ss_dssp -SCC------------------------CCCCHHHHHHHTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred -ccc------------------------ccccHHHHHHHhcCCchhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 000001111222222222222111 111112222223344444332 11
Q ss_pred ---CCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q psy15864 269 ---PLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTVFLVLAAF 344 (553)
Q Consensus 269 ---~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (553)
+.. ..+...+..++.+++.++.++++||+|||+++.++.++.+++.+++.+ ..+.+.+++..++.++
T Consensus 254 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---------ATSALEVVILKTLHMF 324 (417)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---------CCSHHHHHHHTTHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---------hccHHHHHHHHHHHHH
Confidence 011 123444556778889999999999999999887776666555444332 3334444444444444
Q ss_pred HHhhhhccccceeeccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHHhhccchhhHHHHHHHHHHHHhhheEEcccC
Q psy15864 345 LTHICIRLLPWMLIGEVFPNNIRATASGAS-GSSSYIFAFAVNKLYYPMLDTFHLWGTLYFYAAISVVGTLYMYFVMPET 423 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet 423 (553)
+.+....+ .+.+++|.+|++.||++.++. +....++++++|.+.+.+.+..++...+.+.+++.++..++.+++.||+
T Consensus 325 ~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 325 EVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 43333222 357899999999999999984 7778899999999999998877766666666666666666666667765
Q ss_pred CCC
Q psy15864 424 EGR 426 (553)
Q Consensus 424 ~~~ 426 (553)
+..
T Consensus 404 ~~~ 406 (417)
T 2cfq_A 404 GPL 406 (417)
T ss_dssp CTT
T ss_pred Cch
Confidence 443
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.64 E-value=3e-17 Score=164.78 Aligned_cols=252 Identities=14% Similarity=0.060 Sum_probs=159.2
Q ss_pred cccccccccc--chhhhhhhhhccCcccccchhchhhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH-Hhc
Q psy15864 90 GTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC-ALY 162 (553)
Q Consensus 90 gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i-~~~ 162 (553)
.|+++|++.+ .+...+++.|++|+++|++++++...+..+|.++++.+++.+ +||+.|++.+++.++..+ ..+
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777655 456678999999999999999999999999999999888766 899999999888877765 445
Q ss_pred cccCCceeeeecCChHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcchhHHHHHHH
Q psy15864 163 FIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGKDGQRRPNYRMYMRRTFLLPYAIVTS 242 (553)
Q Consensus 163 ~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (553)
++||+++....+ ......++..++++..+...+
T Consensus 174 ~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~--- 206 (375)
T 2gfp_A 174 WMPETRPVDAPR--------------------------------------------TRLLTSYKTLFGNSGFNCYLL--- 206 (375)
T ss_dssp SSCCCSTTTCCC--------------------------------------------CCTTTCSTHHHHHHHHHHHHH---
T ss_pred HCcccCCCCccc--------------------------------------------ccHHHHHHHHhcCcchHHHHH---
Confidence 588876421000 000111222222222222222
Q ss_pred HHHHHhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhH-HHHHHHHHHH
Q psy15864 243 LFFIGQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGG-SAACFIVVAV 319 (553)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~~~~~ 319 (553)
..+........+..+.|.++++ .+.+. .......+..++.+++.++.+++.||++++ +..+..+ ..++.+++..
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 207 -MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP 283 (375)
T ss_dssp -HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2222233333444444444433 34332 234556677788899999999999999872 2222222 1111111111
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864 320 YAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHL 398 (553)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 398 (553)
... . ..+.+..++..++.+++.+... +...+++.|.+| +.||++.|+.+....+++.++|.+.+.+.+..++
T Consensus 284 ~~~-~----~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 284 DWF-G----VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp HHH-H----HHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred hhh-c----cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 000 0 1133444555666666665544 444588999998 8999999999999999999999999888765553
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.56 E-value=7.3e-15 Score=154.35 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=60.6
Q ss_pred ccccccccccc--chhhhhhhhhccCcccccchhch---hhhhHHHHHHHHHhhcccc----chHHHHHHHHHHHHHHHH
Q psy15864 89 KGTFLYKMAAP--LVLVLTYVAEITQPHLRGMLSAT---ASMTTIFGTVSQLFLGSFL----HWRSAAILNLLFPILALC 159 (553)
Q Consensus 89 ~gr~~~G~ga~--~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~lG~~l~~~l~~~l----gWr~~f~i~~i~~li~~i 159 (553)
-.|+++|++.+ .+...+++.|++|+++|+++.++ +..+..+|.++++++++.+ +||++|++.+++.++.++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 35778887654 46778999999999999877766 8889999999999988765 899999998888777655
Q ss_pred Hhcc
Q psy15864 160 ALYF 163 (553)
Q Consensus 160 ~~~~ 163 (553)
+.++
T Consensus 194 ~~~~ 197 (524)
T 2xut_A 194 FFWL 197 (524)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 5443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=3.1e-13 Score=138.78 Aligned_cols=183 Identities=12% Similarity=0.006 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHH
Q psy15864 236 PYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACF 314 (553)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 314 (553)
+.++..++..+........+..++|.+.++. .+. +..+...+..++.+++.+++|+++||+|||++++++.++.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3344444444444444555666677776666 543 45677888899999999999999999999999999999888888
Q ss_pred HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHh
Q psy15864 315 IVVAVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLD 394 (553)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~ 394 (553)
+++++.... ..+.+.+++++++.|++.+....+. .++++|.+|++.|+.++++......++.+++|.+.+.+.+
T Consensus 107 ~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 107 LFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHCHHH-----HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHhhhhc-----cccHHHHHHHHHHHHHHhhhccchH-HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877652210 1356778888899888877665554 4899999999999999999999999999999999998888
Q ss_pred hcc-chhhHHHHHHHHHHHHhhheEEcccCCC
Q psy15864 395 TFH-LWGTLYFYAAISVVGTLYMYFVMPETEG 425 (553)
Q Consensus 395 ~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~~ 425 (553)
..+ |...+++.+++.++..++.++++||+..
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 888 8888888777777777776677887643
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=6.2e-13 Score=136.07 Aligned_cols=151 Identities=6% Similarity=-0.189 Sum_probs=121.2
Q ss_pred HHHHHHHHhhhhhHHHHhhHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHH
Q psy15864 240 VTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDP-YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVA 318 (553)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 318 (553)
.+++.++...........+.|.+.+..+.+... .+...+..++.+++.+++|+++||+|||++++++.++.+++.++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333334444444556667788888888876543 4777888899999999999999999999999999999998888873
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHH-hhcc
Q psy15864 319 VYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML-DTFH 397 (553)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~-~~~g 397 (553)
.... ..+.+.+++.+++.|++.+...... .++++|.+|++.|+.++++.+....++..+++.+.+.+. ...+
T Consensus 110 ~~~~------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 110 PAAE------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHH------TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred hccc------cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3222 6678888899999999887766555 599999999999999999999999999999999999887 4444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.42 E-value=3.2e-13 Score=135.27 Aligned_cols=171 Identities=11% Similarity=-0.024 Sum_probs=134.3
Q ss_pred HHhhhhhHHHHhhHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHHHHHHHhh
Q psy15864 246 IGQFGGMTTLQTYAVGIFESIHAPLD-PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFH 324 (553)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 324 (553)
+.............|.+.++.+.+.. ..+...+..++.+++.++.|+++||+|||++++++.++.+++.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----- 84 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT----- 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----
Confidence 33344455555666777777776544 346777888999999999999999999999999999998888887776
Q ss_pred cccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccchhhHHH
Q psy15864 325 LSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLWGTLYF 404 (553)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 404 (553)
.++.+.+++.+++.+++.+...... ..++.|.+|++.|+.+.++......++..++|.+.+.+.+..+|...+.+
T Consensus 85 ----~~~~~~l~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 85 ----TSSLTVLIAASAMQGMGTGVGGVMA-RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 3456677788888888776555444 58999999999999999999999999999999999988877787777777
Q ss_pred HHHHHHHHHhhheEEcccCCCC
Q psy15864 405 YAAISVVGTLYMYFVMPETEGR 426 (553)
Q Consensus 405 ~~~~~~~~~~~~~~~~pet~~~ 426 (553)
.+++.++..++.++++||++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHCcccCCC
Confidence 7777777666677778887543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=2.1e-12 Score=134.25 Aligned_cols=167 Identities=11% Similarity=-0.027 Sum_probs=126.2
Q ss_pred HHhhhhhHHHHhhHHHHHHh------hCCCCC-hHHHHHHHHHHHHHHHHHHhhhhcc-cCCcceeecchhHHHHHHHHH
Q psy15864 246 IGQFGGMTTLQTYAVGIFES------IHAPLD-PYFATLLLGVAELGGALLCVVLIHY-TGKRPLALISTGGSAACFIVV 317 (553)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~ 317 (553)
+.....++.+..+++.++.. .+.+.. ..+...+..++.+++++++|+++|| +|||++++++.++.+++.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 33333444444555555543 465533 3477778889999999999999999 899999999998888888777
Q ss_pred HHHHHhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeeccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHHhh
Q psy15864 318 AVYAQFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNI--RATASGASGSSSYIFAFAVNKLYYPMLDT 395 (553)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~ 395 (553)
++ .++.+.+++++++.|++.+...... .++++|.+|++. |+.++++.+....++..++|.+.+.+.+.
T Consensus 103 ~~---------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 103 AL---------PFGASALFGSIILIIIGTGFLKPNV-STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HS---------CCSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------hhhHHHHHHHHHHHHHHHHhccchH-HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 6678888889999998877666554 599999999988 77788888899999999999999999888
Q ss_pred ccchhhHHHHHHHHHHHHhhheEEccc
Q psy15864 396 FHLWGTLYFYAAISVVGTLYMYFVMPE 422 (553)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~~~~~~~pe 422 (553)
.+|...+++.+++.++..++.++..|+
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 887777777655555554444333343
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=1.5e-11 Score=128.98 Aligned_cols=156 Identities=13% Similarity=-0.015 Sum_probs=118.6
Q ss_pred hHHHHhhHHHHH-HhhC------CCC-ChHHHHHHHHHHHHHHHHHHhhhhccc-CCcceeecchhHHHHHHHHHHHHHH
Q psy15864 252 MTTLQTYAVGIF-ESIH------APL-DPYFATLLLGVAELGGALLCVVLIHYT-GKRPLALISTGGSAACFIVVAVYAQ 322 (553)
Q Consensus 252 ~~~~~~~~~~~~-~~~g------~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~ 322 (553)
++.+..+++.++ +..+ .+. +..+...+..++.+++.+++|+++||+ |||++++++.++.+++.+++.+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI--- 104 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence 344444555554 3456 543 445778888899999999999999999 9999999988888888877766
Q ss_pred hhcccCCC-CChhHHHHHHHHHHHHhhhhccccceeeccccccchhhhhhhH---HHHHHHHHHHHHHHHhHHHHhhccc
Q psy15864 323 FHLSYGWD-SPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGA---SGSSSYIFAFAVNKLYYPMLDTFHL 398 (553)
Q Consensus 323 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~Rg~~~~~---~~~~~~~~~~i~~~~~~~~~~~~g~ 398 (553)
.. +.+.+++.+++.+++.+...... .++++|.+|++.|+.+.++ .+....++..++|.+.+.+.+..+|
T Consensus 105 ------~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 105 ------FEHSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp ------TSSCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred ------hcccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 55 67777888888888776655444 5899999999999876665 8888899999999999988887887
Q ss_pred hhhHHHHHHHHHHHHhhhe
Q psy15864 399 WGTLYFYAAISVVGTLYMY 417 (553)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (553)
...+.+.+++.++..++.+
T Consensus 178 ~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 178 AVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666665555444443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.63 E-value=3.3e-09 Score=107.62 Aligned_cols=152 Identities=11% Similarity=-0.061 Sum_probs=84.7
Q ss_pred HhhhhhHHHHhhHHHHHHh-hCCCC-ChHHHHHHHHHHHHHHHHHHhhhhcccCCcceeecchhHHHHHHHHH---HHHH
Q psy15864 247 GQFGGMTTLQTYAVGIFES-IHAPL-DPYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVV---AVYA 321 (553)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~ 321 (553)
..+..+.....++|.+++. .+.+. +..+..++..++.+++++++|+++||+|||++++++.++.+++...+ .+..
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555677777654 56654 44577888889999999999999999999999887766554322111 1110
Q ss_pred HhhcccCCCCChhHHHHHHHHHHHHhhhhccccceeecccccc--chhhhhhhHHHHHHHHHHHHHHHHhHHHHhhccch
Q psy15864 322 QFHLSYGWDSPLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPN--NIRATASGASGSSSYIFAFAVNKLYYPMLDTFHLW 399 (553)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~ 399 (553)
.. .... +..+.+.+.+.+..+.+.. ..+.+..+. +.|+...|.....+.++..++|.+.+.+.+ .++.
T Consensus 98 ~~-----~~~~---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~ 167 (417)
T 2cfq_A 98 LL-----QYNI---LVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQ 167 (417)
T ss_dssp HH-----HTTC---CHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSH
T ss_pred HH-----HHHH---HHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 00 0011 1112222221112111111 222222222 345666677767778888899988888776 3555
Q ss_pred hhHHHHHHH
Q psy15864 400 GTLYFYAAI 408 (553)
Q Consensus 400 ~~~~~~~~~ 408 (553)
..+++.+++
T Consensus 168 ~~f~~~~~~ 176 (417)
T 2cfq_A 168 FVFWLGSGC 176 (417)
T ss_dssp HHHTTTTTT
T ss_pred HHHHHHHHH
Confidence 444443333
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=39.92 E-value=9 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHhhc
Q psy15864 495 ETEGRTLRDIEEHFAD 510 (553)
Q Consensus 495 eTkg~tleei~~~f~~ 510 (553)
+.||.|-+||++.|..
T Consensus 38 ~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHc
Confidence 7899999999998863
No 16
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=36.72 E-value=11 Score=26.21 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHhhcC
Q psy15864 495 ETEGRTLRDIEEHFADK 511 (553)
Q Consensus 495 eTkg~tleei~~~f~~~ 511 (553)
|.||.|-+||++.|..-
T Consensus 43 ~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc
Confidence 88999999999999753
No 17
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=29.15 E-value=23 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.5
Q ss_pred eEeeccCCCCCCHHHHH
Q psy15864 489 MYFVMPETEGRTLRDIE 505 (553)
Q Consensus 489 ~~f~~peTkg~tleei~ 505 (553)
..-+||+-+++|+||+-
T Consensus 31 sIs~M~~Y~~~S~EELR 47 (56)
T 3mmy_B 31 CITAMKEYESKSLEELR 47 (56)
T ss_dssp CGGGSTTTTTSCHHHHH
T ss_pred EEecchhhhcCCHHHHH
Confidence 55679999999999973
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.29 E-value=79 Score=18.04 Aligned_cols=12 Identities=25% Similarity=0.348 Sum_probs=7.5
Q ss_pred HHhccccCCcee
Q psy15864 159 CALYFIPESPHW 170 (553)
Q Consensus 159 i~~~~lpEsp~~ 170 (553)
.+..+++|+|+.
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 334457888864
No 19
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=21.59 E-value=86 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=21.1
Q ss_pred EeeeEeeccCCCCCCHHHHHHHhhc
Q psy15864 486 TLYMYFVMPETEGRTLRDIEEHFAD 510 (553)
Q Consensus 486 ~~~~~f~~peTkg~tleei~~~f~~ 510 (553)
.+-+++.+|+.+|++.++|++.+..
T Consensus 52 ~L~i~~vveD~~~~~tD~lee~i~~ 76 (91)
T 2yy3_A 52 ALKFYVLGRDEEGYSFDEVAEKFEE 76 (91)
T ss_dssp EEEEEEEECSSTTCCHHHHHHHHHH
T ss_pred eEEEEEEEECCCccccHHHHHHHhc
Confidence 3557888999999999999998864
No 20
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A*
Probab=20.06 E-value=27 Score=34.84 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=7.2
Q ss_pred CHHHHHHHhhc
Q psy15864 500 TLRDIEEHFAD 510 (553)
Q Consensus 500 tleei~~~f~~ 510 (553)
-|.+|++.|..
T Consensus 402 ll~~I~~~f~t 412 (478)
T 1b6a_A 402 LLNVINENFGT 412 (478)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHhcCC
Confidence 36677777754
Done!