RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15864
(553 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 78.6 bits (192), Expect = 3e-16
Identities = 48/337 (14%), Positives = 98/337 (29%), Gaps = 37/337 (10%)
Query: 104 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILA 157
+ RG + + + G L + + ++A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 158 LCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESELKRLGK 217
L A + ++P G ++ + + E EL
Sbjct: 198 LFAFAMMRDTPQS-----------------CGLPPIEEYKNDYPDDYNEKAEQELTA--- 237
Query: 218 DGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLDPYFATL 277
++ + + L AI ++ ++G + TY + +A
Sbjct: 238 ---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD--KSSWAYF 292
Query: 278 LLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSPLVPTV 337
L A + G LLC + + I VY +P V +
Sbjct: 293 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----AGNPTVDMI 348
Query: 338 FLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPML-DTF 396
+++ FL + + +L + E+ P TA+G +G Y+ D F
Sbjct: 349 CMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407
Query: 397 HLWGTLYFYAAISVVGTLYMYFVMPETEGRTLRDIEE 433
G S++ + + VM + R + ++E
Sbjct: 408 GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 53.2 bits (126), Expect = 4e-08
Identities = 35/339 (10%), Positives = 78/339 (23%), Gaps = 20/339 (5%)
Query: 92 FLYKMAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNL 151
F + PL+ V I G + +F R+ +
Sbjct: 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149
Query: 152 LFPILALCALYFIPESPHWLISQGRMQEASASLCWLRGWVTPDKVQTELSQITKAIEESE 211
+ + A + ++ G + L L + D + T A
Sbjct: 150 GWALGASIVGIMFTINNQFVFWLGSG--CALILAVLLFFAKTDAPSSA----TVANAVGA 203
Query: 212 LKRLGKDGQRRPNYRMYMRRTFLLPYAIVTSLFFIGQFGGMTTLQTYAVGIFESIHAPLD 271
+R L V+ + + ++ +
Sbjct: 204 NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263
Query: 272 PYFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDS 331
LL + + A L + I + + + + + +
Sbjct: 264 VTTMGELLNASIMFFAPLIINRIGGKNA-------------LLLAGTIMSVRIIGSSFAT 310
Query: 332 PLVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYP 391
+ V L + + + I F AT A +
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370
Query: 392 ML-DTFHLWGTLYFYAAISVVGTLYMYFVMPETEGRTLR 429
+ ++ G +++ TL F + +L
Sbjct: 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 46.6 bits (110), Expect = 3e-06
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNN---- 77
K K E ++K ++ KKK+E K+ K+ ++ +K NN + +
Sbjct: 227 KEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLK 286
Query: 78 ------NNNNNNNNNEEKGTFLYK 95
+N N + +E+ YK
Sbjct: 287 KYSEKCSNLNFEDEFKEELHSDYK 310
Score = 45.4 bits (107), Expect = 9e-06
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
K+ K+ K+ ++ K K + K K + KK +K +N N + +++
Sbjct: 250 KKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDY 309
Query: 80 NN 81
N
Sbjct: 310 KN 311
Score = 44.7 bits (105), Expect = 2e-05
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN-------NNNNNNN 73
K+ K+ KK ++ K+ ++ ++ +K K + K+ +N N
Sbjct: 237 KRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLN 296
Query: 74 NNNNNNNNNNNNNEEKGT 91
+ +++ + K T
Sbjct: 297 FEDEFKEELHSDYKNKCT 314
Score = 44.7 bits (105), Expect = 2e-05
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN 78
+W KK+E K+ K+ ++ +K K + K K + KK + +N N +
Sbjct: 245 EWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEE 304
Query: 79 NNNNNNN 85
+++ N
Sbjct: 305 LHSDYKN 311
Score = 30.8 bits (69), Expect = 0.35
Identities = 5/46 (10%), Positives = 11/46 (23%)
Query: 34 KAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
++K+E + K K N + +
Sbjct: 15 NDNTIKEKREHIDLDDFSKFGCDKNSVDTNTKVWECKKPYKLSTKD 60
Score = 28.1 bits (62), Expect = 2.7
Identities = 4/48 (8%), Positives = 12/48 (25%)
Query: 34 KAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNN 81
K++++ + K K + N + +
Sbjct: 13 NGNDNTIKEKREHIDLDDFSKFGCDKNSVDTNTKVWECKKPYKLSTKD 60
Score = 26.9 bits (59), Expect = 6.8
Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 11/75 (14%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN-----------NNN 74
+ KEK+ K +K K + + + N
Sbjct: 15 NDNTIKEKREHIDLDDFSKFGCDKNSVDTNTKVWECKKPYKLSTKDVCVPPRRQELCLGN 74
Query: 75 NNNNNNNNNNNNEEK 89
+ + N +E
Sbjct: 75 IDRIYDKNLLMIKEH 89
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 45.0 bits (106), Expect = 9e-06
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKE--KKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNN 81
+ +K+ K + K E K+ + +K K N N + N N+ +
Sbjct: 201 YEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVS 260
Query: 82 NNNNNEEK 89
NN +
Sbjct: 261 LLLNNCDA 268
Score = 44.6 bits (105), Expect = 1e-05
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 24 KKKEKKKKEKKAKKK-EKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNN 82
+KE K + + K + K+ + +K K+ N + N N+ +
Sbjct: 204 CEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLL 263
Query: 83 NNNNEEKGTF 92
NN + E +
Sbjct: 264 NNCDAEYSKY 273
Score = 44.6 bits (105), Expect = 1e-05
Identities = 10/72 (13%), Positives = 22/72 (30%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
+ +K+ K + + K + K+ + +K N N + N N+
Sbjct: 200 LYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKV 259
Query: 84 NNNEEKGTFLYK 95
+ Y
Sbjct: 260 SLLLNNCDAEYS 271
Score = 43.5 bits (102), Expect = 3e-05
Identities = 8/64 (12%), Positives = 22/64 (34%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K + + + ++ + +K K+ + K + N N+ + NN +
Sbjct: 209 IDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDA 268
Query: 81 NNNN 84
+
Sbjct: 269 EYSK 272
Score = 41.9 bits (98), Expect = 1e-04
Identities = 10/69 (14%), Positives = 18/69 (26%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K K + +K K + + K + K+ N N +
Sbjct: 193 SKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISE 252
Query: 81 NNNNNNEEK 89
N N+
Sbjct: 253 NKNDAKVSL 261
Score = 41.2 bits (96), Expect = 2e-04
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
+K K + + + KE + +K K+ + + N N+ + N
Sbjct: 205 EKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLN 264
Query: 81 NNNNNNEEK 89
N + +
Sbjct: 265 NCDAEYSKY 273
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/69 (14%), Positives = 26/69 (37%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNN 78
K+ K ++ + K + K+ + +K K+ + + N N+ +
Sbjct: 204 CEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLL 263
Query: 79 NNNNNNNNE 87
NN + ++
Sbjct: 264 NNCDAEYSK 272
Score = 39.6 bits (92), Expect = 5e-04
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 5/80 (6%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK-----KKKKKNNNNNNNNNNNNNN 75
K K K K +A +KE K + K K+ + N N
Sbjct: 189 KLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLI 248
Query: 76 NNNNNNNNNNNEEKGTFLYK 95
+ N N+
Sbjct: 249 KISENKNDAKVSLLLNNCDA 268
Score = 30.8 bits (69), Expect = 0.35
Identities = 14/61 (22%), Positives = 21/61 (34%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
K E K ++ K + E K K +KK + + + NN NN N
Sbjct: 102 FGGYSTKAENKIQEVFKGAHGEISEHKIKNFRKKWWNEFREKLWEAMLSEHKNNINNCKN 161
Query: 84 N 84
Sbjct: 162 I 162
Score = 26.9 bits (59), Expect = 5.7
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K + K ++ K + + K + +KK + ++K + + NN NN N
Sbjct: 103 GGYSTKAENKIQEVFKGAHGEISEHKIKNFRKKWWNEFREKLWEAMLSEHKNNINNCKNI 162
Score = 26.5 bits (58), Expect = 9.0
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 36 KKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
+ K E K ++ K + + + N
Sbjct: 98 NDMDFGGYSTKAENKIQEVFKGAHGEISEHKIKN 131
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 43.1 bits (101), Expect = 5e-05
Identities = 11/68 (16%), Positives = 19/68 (27%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
A K + +K K+ + K KK +K + + N N
Sbjct: 218 HDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFEN 277
Query: 81 NNNNNNEE 88
N +
Sbjct: 278 EINKRDNL 285
Score = 42.7 bits (100), Expect = 6e-05
Identities = 10/78 (12%), Positives = 16/78 (20%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
K ++ +KKK+ K KK N + N
Sbjct: 210 AICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNG 269
Query: 84 NNNEEKGTFLYKMAAPLV 101
+ K
Sbjct: 270 FKEATFENEINKRDNLYN 287
Score = 39.2 bits (91), Expect = 8e-04
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
W K K+ + E K++ K+ +N N +N
Sbjct: 235 WDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDN 284
Score = 38.5 bits (89), Expect = 0.001
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNN 77
W KKK+ K +K ++ + K++ N N +N
Sbjct: 226 QWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDN 284
Score = 38.5 bits (89), Expect = 0.002
Identities = 10/72 (13%), Positives = 19/72 (26%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K + +KK++ K KK +K + + N
Sbjct: 215 PLCHDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEAT 274
Query: 81 NNNNNNEEKGTF 92
N N+ +
Sbjct: 275 FENEINKRDNLY 286
Score = 38.1 bits (88), Expect = 0.002
Identities = 9/71 (12%), Positives = 21/71 (29%)
Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNN 84
K ++ +K+K+ + + KK +K +N + N N
Sbjct: 218 HDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFEN 277
Query: 85 NNEEKGTFLYK 95
++
Sbjct: 278 EINKRDNLYNH 288
Score = 37.3 bits (86), Expect = 0.003
Identities = 9/69 (13%), Positives = 14/69 (20%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K K ++ KKK+ K + N +
Sbjct: 203 KLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDI 262
Query: 81 NNNNNNEEK 89
N K
Sbjct: 263 LKQELNGFK 271
Score = 37.3 bits (86), Expect = 0.003
Identities = 8/77 (10%), Positives = 14/77 (18%), Gaps = 8/77 (10%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKK--------EKKKKKKKKKKKKKNNNNNNNNNNN 72
K +K K +KKK+ K ++
Sbjct: 194 GKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGT 253
Query: 73 NNNNNNNNNNNNNNEEK 89
N +
Sbjct: 254 ENIATAYDILKQELNGF 270
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 41.9 bits (98), Expect = 1e-04
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKK 51
+ +A K+ +K++E + K + K K+K EK++
Sbjct: 299 MFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 33.0 bits (75), Expect = 0.073
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 33 KKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+A K+ +K+ + +++ ++ K K+K +K
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEK 329
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 38.9 bits (91), Expect = 7e-04
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 1 MDSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
M + K+ I ++ D+ + + K + E + K+ KE+K K K++ +K K+
Sbjct: 86 MTNEEKNIITNLSK---CDFTQMSQYFKAQTEAR---KQMSKEEKLKIKEENEKLLKE 137
Score = 38.9 bits (91), Expect = 8e-04
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 19 DWKKAKKKEKKKKEKKAKK-------------KEKKKEKKKKEKKKKKKKKKKKKK 61
DW+K E+K K E +K+ K+EK K K++ +K K
Sbjct: 81 DWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 38.5 bits (89), Expect = 0.001
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+ KK + + + K +K + E KK +KK + K
Sbjct: 111 LDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKN 153
Score = 28.5 bits (63), Expect = 1.9
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 16 TPLDWKKAKKKEKKKKEKKAKKKEKKK---EKKKKEKKKKKKKKKKKKKNN 63
T L+ K K + E++ K + + KK +KK + N
Sbjct: 103 TQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKN 153
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 35.6 bits (82), Expect = 0.001
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 19 DWKKAKKKEKKKKEKKAKK-----KEKKKEKKKKEKKKKKKKKKKKK 60
W ++E+ K + A+K + ++ KKKK+K++K
Sbjct: 40 RWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 35.3 bits (81), Expect = 0.003
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNN 71
WK +KEK KK +K+K E + + ++++++ N +
Sbjct: 51 QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
Score = 31.5 bits (71), Expect = 0.068
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 21 KKAKK-KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
KK + K+ + E + +E++++ ++K +
Sbjct: 65 KKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGPSS 107
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 36.6 bits (85), Expect = 0.004
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 17/60 (28%)
Query: 19 DWKKAKKKEKKKKEKKA-----------------KKKEKKKEKKKKEKKKKKKKKKKKKK 61
D+ + K+ +KE+KK+ +EKK+ + +++K ++
Sbjct: 69 DFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 35.8 bits (83), Expect = 0.008
Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
D+ K + +KE+K K+ ++KK+ + +++K ++
Sbjct: 93 DFTKMFDYFQLQKEQK---KQLTSQEKKQIRLEREKFEED 129
Score = 33.1 bits (76), Expect = 0.056
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 18 LDWKKAKKKEKKKKEKKAKKKEKKKEKKK 46
+K +KK+ +EKK + E++K ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 33.7 bits (77), Expect = 0.007
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 20 WKKAKKKEKKKKEKKAKK-KEKKKEKKKKEKKKKKKKKKKKKK 61
WK + EK ++A+K + +EK K + ++K K K
Sbjct: 43 WKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 33.2 bits (76), Expect = 0.008
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
WK + EK+ +AK+ K+ + K + ++K K
Sbjct: 41 WKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 33.3 bits (76), Expect = 0.014
Identities = 5/46 (10%), Positives = 20/46 (43%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
W++ + +K+ +K A++++++ + K + +
Sbjct: 45 WQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYI 90
Score = 32.9 bits (75), Expect = 0.019
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
K A++++++ K + + + K+ K+K
Sbjct: 58 KLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
Score = 31.8 bits (72), Expect = 0.048
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+KK ++++++ + K + + K+ K+K
Sbjct: 56 YKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 33.0 bits (75), Expect = 0.017
Identities = 7/43 (16%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 20 WKKAKKKEKKKKEKKAKK-KEKKKEKKKKEKKKKKKKKKKKKK 61
+K+ +K+K K + ++ K++ + + ++ + KK
Sbjct: 49 YKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
Score = 26.8 bits (59), Expect = 2.4
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 5 TKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKK 54
TK + E K + +++K++ + + +E + KK
Sbjct: 42 TKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 32.5 bits (74), Expect = 0.019
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK 56
W +K+ EKKA K ++K EK + K K
Sbjct: 41 WNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 77
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 33.3 bits (76), Expect = 0.026
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
+K + ++ ++ A E+ +EK K ++ +K K+ K+
Sbjct: 100 QKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 32.2 bits (73), Expect = 0.060
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
K+ ++ + ++ + ++ +EK K ++ +K K
Sbjct: 95 KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 31.8 bits (72), Expect = 0.094
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
++++ +E + K + ++ +K +E + K +K++
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREH 75
Score = 30.6 bits (69), Expect = 0.19
Identities = 6/48 (12%), Positives = 21/48 (43%)
Query: 14 EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
P+ + ++++ ++ +KK E ++ +K ++ + K
Sbjct: 23 PPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA 70
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 31.7 bits (72), Expect = 0.027
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 22 KAKKKEKKKKEKKAKK--KEKKKEKKKKEKKKKKKKKKKKKK 61
+ K KK++ A++ K K + K + K KK + KKK
Sbjct: 8 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKK 49
Score = 30.1 bits (68), Expect = 0.091
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 22 KAKKKEKK--KKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
AKK++ +++ K+ K + K K K KK + KKK
Sbjct: 12 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKA 50
Score = 29.8 bits (67), Expect = 0.12
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 18 LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
+D KK + + ++ K AK K + K +K + KKK
Sbjct: 11 IDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKA 50
Score = 26.3 bits (58), Expect = 2.5
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
K KK + + +++ K + K K K KK
Sbjct: 9 TKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKV 43
Score = 25.5 bits (56), Expect = 4.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
K K K K KK + +KK ++ +E+ K + + ++ N
Sbjct: 29 KADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 71
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 32.9 bits (75), Expect = 0.041
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 6 KHQIGTFTEPTPLD---WKKAK------KKEKKKKEKKAKKKEKKKE-KKKKEKKKKKKK 55
K+ I F ++ W +A+ K+ ++E+ + + +K +E+ ++KK
Sbjct: 21 KYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKY 80
Query: 56 KKKKKKNNNNN 66
K+ +
Sbjct: 81 GIVLKEFRPED 91
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of
iota-toxin {Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 33.3 bits (76), Expect = 0.043
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 29 KKKEKKAKKKEKKKEKKKKEK--KKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNN 86
K ++ A + EKK+ ++ ++ +K+ + KK++ +N + + +N
Sbjct: 8 LKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPR 67
Query: 87 EEK 89
E++
Sbjct: 68 EKE 70
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 30.7 bits (69), Expect = 0.085
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
K + + KK KE+ KK + K K N ++
Sbjct: 41 KWHNDAENKKCTLDKEEAKKVADETAKDGKTGNTNTTGSS 80
Score = 29.1 bits (65), Expect = 0.29
Identities = 15/70 (21%), Positives = 21/70 (30%)
Query: 3 SSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
+ T K + E K K E KK KE+ KK + K
Sbjct: 11 KHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKDGK 70
Query: 63 NNNNNNNNNN 72
N N ++
Sbjct: 71 TGNTNTTGSS 80
Score = 28.0 bits (62), Expect = 0.67
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNN 77
+K + E K+ K + KK K++ KK + + N N ++
Sbjct: 29 NKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKDGKTGNTNTTGSS 80
Score = 27.6 bits (61), Expect = 0.94
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKK-------------EKKKKKKKKKKKKKNNNNNNN 68
+K + + +++A + E KK + E KK K++ KK +
Sbjct: 8 LTQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAK 67
Query: 69 NNNNNNNNNNNNN 81
+ N N ++
Sbjct: 68 DGKTGNTNTTGSS 80
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 30.6 bits (69), Expect = 0.088
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 33 KKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
K A + K EK K K + + KK +
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAMS 45
Score = 26.7 bits (59), Expect = 2.1
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 34 KAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
A+K + K ++ K K + + +
Sbjct: 13 NAQKSAMARAKNLEKAKAAGKGSQLEANKKAMS 45
Score = 25.9 bits (57), Expect = 4.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
K K +K + K + + KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAM 44
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 32.7 bits (74), Expect = 0.098
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 6 KHQIGTFTEPTPLDWKKAKKKEKKK-KEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
H++ +P P + + +EK ++ KA E+ + + ++ K K++
Sbjct: 203 SHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 32.3 bits (73), Expect = 0.15
Identities = 2/41 (4%), Positives = 10/41 (24%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
W E + + + +++ + +
Sbjct: 101 WTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLR 141
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia
coli [TaxId: 562]}
Length = 100
Score = 29.8 bits (67), Expect = 0.20
Identities = 9/72 (12%), Positives = 21/72 (29%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K++ K + K+ A K K+ + K + + +++ + N
Sbjct: 2 KQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRN 61
Query: 81 NNNNNNEEKGTF 92
G
Sbjct: 62 RCRQTGRPHGFL 73
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 28.9 bits (65), Expect = 0.40
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
+K +K A +E KK+ ++ + K+K K +
Sbjct: 58 DKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 28.5 bits (64), Expect = 0.55
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKE 48
K A +E KKK +++ E KEK K
Sbjct: 65 KGASDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 27.0 bits (60), Expect = 2.0
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKK 52
+K ++ KK ++ E K++ K +
Sbjct: 62 DIQKGASDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 26.2 bits (58), Expect = 3.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
KK K ++ KKK E+ + K+K K
Sbjct: 58 DKKIDIQKGASDEEVKKKLEESNLTEYMKEKIK 90
Score = 26.2 bits (58), Expect = 4.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKK 55
+K +++ KKK ++ + K+K K +
Sbjct: 62 DIQKGASDEEVKKKLEESNLTEYMKEKIKIR 92
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 28.3 bits (63), Expect = 0.40
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKE 48
WK KEK K E AK + + E++ K
Sbjct: 42 WKTMSAKEKGKFEDMAKADKARYEREMKT 70
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 29.3 bits (66), Expect = 0.40
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 26 KEKKKKEKKAKK-KEKKKEKKKKEKKKKKKKKKKKK 60
+++ K K + K E +++++++KK KKKKKK
Sbjct: 69 EKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
+K+ K K ++ + +++K ++KK KKKKKK
Sbjct: 67 VVEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 27.4 bits (61), Expect = 1.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 18 LDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKK 54
++ + K K + +K + ++K ++KK+KKKKKK
Sbjct: 68 VEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 27.0 bits (60), Expect = 2.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKK 56
+K K K E K E +++K++++K KKKKKK
Sbjct: 69 EKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 30.4 bits (68), Expect = 0.42
Identities = 11/60 (18%), Positives = 16/60 (26%)
Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEK 89
K+ K KKK + + K + N NN + E K
Sbjct: 127 SLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRVEFK 186
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 28.7 bits (64), Expect = 0.45
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKK 52
WK +EK+ E KA+ +K+ E +K+
Sbjct: 59 WKALTPEEKQPYEAKAQADKKRYESEKELYNAT 91
Score = 25.2 bits (55), Expect = 7.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 41 KKEKKKKEKKKKKKKKKKKKKN 62
++ KK+ +KKK K+ +
Sbjct: 5 REPKKRTTRKKKDPNAPKRALS 26
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 29.0 bits (65), Expect = 0.46
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
K+ + + K+ +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 28.6 bits (64), Expect = 0.58
Identities = 2/29 (6%), Positives = 10/29 (34%)
Query: 33 KKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
++ + + K+ +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.9 bits (62), Expect = 1.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 40 KKKEKKKKEKKKKKKKKKKKKKN 62
K+ + E K+ +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.5 bits (61), Expect = 1.4
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKK 53
KE + E K+ +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.5 bits (61), Expect = 1.7
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
+ + E K+ +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.1 bits (60), Expect = 2.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKK 46
K+ + E K EK++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 2.6
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEK 49
++ E K+ +K +
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 4.2
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 31 KEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
K+ + + K +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 4.2
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKE 43
K+ + + K +K+E
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 6.1
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKK 54
++ + + K +K++
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 29.2 bits (65), Expect = 0.56
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 30 KKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+ +K + + + K KKK + K
Sbjct: 83 EDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 29.2 bits (65), Expect = 0.67
Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKK 52
++ ++K + +K +++ E+ KE+ +K
Sbjct: 108 REIRRKLRAD--RKRIDQDRAAERAAKEEAQK 137
Score = 29.2 bits (65), Expect = 0.72
Identities = 3/34 (8%), Positives = 18/34 (52%)
Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+ +++ ++K + K+ + + ++ K++ +
Sbjct: 103 RNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQ 136
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 29.3 bits (65), Expect = 0.76
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTY 106
K N N N + N N +E + + +L +
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLINPEYILFPHW 56
Score = 28.1 bits (62), Expect = 1.7
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNN 63
K K +K KK+ + K K + +K K N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 28.1 bits (62), Expect = 1.8
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 44 KKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
K K +K KK+ + N N + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 27.0 bits (59), Expect = 3.8
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 45 KKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNN 84
K K +K KK+ ++ N N + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 27.0 bits (59), Expect = 4.3
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNN 67
K K +K KK+ + K K + + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 27.0 bits (59), Expect = 4.7
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 35 AKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNN 76
A K + +K KK+ + K N + N
Sbjct: 6 ATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 27.0 bits (59), Expect = 5.0
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 40 KKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNN 79
K K +K KK+ + K N + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 26.2 bits (57), Expect = 7.4
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 41 KKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNN 80
K K +K KK+ + K N + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
Score = 25.8 bits (56), Expect = 10.0
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 46 KKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNN 85
K K +K KK+ + N N + N
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
{Human coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 29.8 bits (67), Expect = 0.77
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 61 KNNNNNNNNNNNNNNNNNNNNNNNN 85
+ + + N+ + N N
Sbjct: 6 TQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 29.4 bits (66), Expect = 0.98
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 59 KKKNNNNNNNNNNNNNNNNNNNNNN 83
+K + + + N+ + N N
Sbjct: 6 TQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 29.0 bits (65), Expect = 1.3
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 60 KKNNNNNNNNNNNNNNNNNNNNNNN 84
+ + + + N+ + N N
Sbjct: 6 TQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 28.6 bits (64), Expect = 1.9
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 63 NNNNNNNNNNNNNNNNNNNNNNNN 86
+ + + N+ + N N
Sbjct: 7 QKTGAHETSLSAAGNSIIHYTNIN 30
Score = 28.6 bits (64), Expect = 1.9
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNNNNN 82
+K + + + N+ + N N
Sbjct: 6 TQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 27.5 bits (61), Expect = 5.0
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNN 86
+ + + + N+ + N
Sbjct: 4 VSTQKTGAHETSLSAAGNSIIHYTN 28
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus
type 3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 29.4 bits (66), Expect = 0.97
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 61 KNNNNNNNNNNNNNNNNNNNNNNNN 85
+ N+N + N N
Sbjct: 6 SQKVGAHENSNRAYGGSTINYTTIN 30
Score = 29.4 bits (66), Expect = 1.0
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 59 KKKNNNNNNNNNNNNNNNNNNNNNN 83
+K + N+N + N N
Sbjct: 6 SQKVGAHENSNRAYGGSTINYTTIN 30
Score = 29.0 bits (65), Expect = 1.3
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNNNNNNNNN 86
+K + N+N + N N +
Sbjct: 6 SQKVGAHENSNRAYGGSTINYTTINYYKD 34
Score = 27.9 bits (62), Expect = 3.7
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 57 KKKKKNNNNNNNNNNNNNNNNNNNNNNNNN 86
+K + N+N + N N ++
Sbjct: 6 SQKVGAHENSNRAYGGSTINYTTINYYKDS 35
Score = 27.1 bits (60), Expect = 5.4
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNN 86
++ + N+N + N
Sbjct: 4 VSSQKVGAHENSNRAYGGSTINYTT 28
Score = 26.7 bits (59), Expect = 6.8
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 56 KKKKKKNNNNNNNNNNNNNNNNNNNNNNNN 85
+K + N+N + N N ++
Sbjct: 6 SQKVGAHENSNRAYGGSTINYTTINYYKDS 35
Score = 26.7 bits (59), Expect = 7.8
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 62 NNNNNNNNNNNNNNNNNNNNNNNN 85
++ + N+N + N
Sbjct: 3 QVSSQKVGAHENSNRAYGGSTINY 26
Score = 26.7 bits (59), Expect = 7.8
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 63 NNNNNNNNNNNNNNNNNNNNNNNN 86
++ + N+N + N
Sbjct: 3 QVSSQKVGAHENSNRAYGGSTINY 26
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 29.5 bits (66), Expect = 1.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 66 NNNNNNNNNNNNNNNNNNNNNEEKGTFLY 94
NN++ N N +N E+G +
Sbjct: 200 NNSDRLPIAWTNEGNLDNIMLSERGATVV 228
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.8 bits (64), Expect = 1.6
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 14 EPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
E + WK E + K++ K K+ + +K +
Sbjct: 201 EGCEISWKDNAHNVTVDLEMR-------KQRNKTTKQVRTIEKITPIE 241
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 26.7 bits (59), Expect = 1.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKK 52
W+ K +K + E KA K + ++ KE +
Sbjct: 42 WRAMK--DKSEWEAKAAKAKDDYDRAVKEFEAN 72
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.9 bits (62), Expect = 1.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 47 KEKKKKKKKKKKKKKNNNNNNNN 69
K K K K +++ K N +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 27.1 bits (60), Expect = 3.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 49 KKKKKKKKKKKKKNNNNNNNNNN 71
K K K K +++ N N +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 27.1 bits (60), Expect = 3.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 50 KKKKKKKKKKKKNNNNNNNNNNN 72
K K K K +++ N N +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 28.5 bits (63), Expect = 2.1
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 27 EKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
+K + K K + E+ + + +K K +
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNE 34
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 28.6 bits (63), Expect = 2.2
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNN 72
+ E K KK +++ K+ KK + + + +
Sbjct: 154 RDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGG 197
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 27.8 bits (62), Expect = 2.4
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 14 EPTPLDWKKAKKKEKKK--KEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKN 62
+ T K+A KK K K K K +E++ E+ K ++ K N
Sbjct: 79 QETSFT-KEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 28.1 bits (62), Expect = 2.6
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNN 68
+ K+ + + + KK E ++ KKK++ +
Sbjct: 134 QNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEE 176
Score = 27.8 bits (61), Expect = 3.4
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 18 LDWKKAKKKEKKKKEKKAKKKEKKK-EKKKKEKKKKKKKKKKKKKNN 63
+D + + ++ + A + KK E ++ + KKK++ K
Sbjct: 130 IDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEE 176
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 162
Score = 27.3 bits (61), Expect = 3.1
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
KK K + K + +K KK ++ K K + + ++N NN++
Sbjct: 69 TKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKT 128
Query: 89 KG 90
KG
Sbjct: 129 KG 130
>d1hn6a_ g.61.1.1 (A:) Apical membrane antigen 1 {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 110
Score = 26.8 bits (59), Expect = 3.2
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 49 KKKKKKKKKKKKKNNNNNNNNNNNNN 74
K + K+ +++ K N+N++ N
Sbjct: 12 KDEIMKEIERESKRIKLNDNDDEGNK 37
Score = 26.5 bits (58), Expect = 3.4
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 51 KKKKKKKKKKKNNNNNNNNNNNNNNN 76
K + K+ ++++ N+N++ N
Sbjct: 12 KDEIMKEIERESKRIKLNDNDDEGNK 37
Score = 26.5 bits (58), Expect = 4.3
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 52 KKKKKKKKKKNNNNNNNNNNNNNNNN 77
K + K+ ++ + N+N++ N
Sbjct: 12 KDEIMKEIERESKRIKLNDNDDEGNK 37
Score = 25.7 bits (56), Expect = 7.9
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 50 KKKKKKKKKKKKNNNNNNNNNNNNNN 75
K + K+ +++ N+N++ N
Sbjct: 12 KDEIMKEIERESKRIKLNDNDDEGNK 37
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.3 bits (58), Expect = 3.2
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 44 KKKKEKKKKKKKKKKKKK 61
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 27.9 bits (62), Expect = 3.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 61 KNNNNNNNNNNNNNNNNNNNNNNNN 85
+ N ++ N +N ++ N N N
Sbjct: 6 RQNVGTHSTQNMVSNGSSLNYFNIN 30
Score = 27.1 bits (60), Expect = 5.6
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 60 KKNNNNNNNNNNNNNNNNNNNNNNN 84
++N ++ N +N ++ N N N
Sbjct: 6 RQNVGTHSTQNMVSNGSSLNYFNIN 30
Score = 27.1 bits (60), Expect = 6.0
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 59 KKKNNNNNNNNNNNNNNNNNNNNNN 83
++ ++ N +N ++ N N N
Sbjct: 6 RQNVGTHSTQNMVSNGSSLNYFNIN 30
Score = 26.7 bits (59), Expect = 8.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 63 NNNNNNNNNNNNNNNNNNNNNNNN 86
N ++ N +N ++ N N N
Sbjct: 7 QNVGTHSTQNMVSNGSSLNYFNIN 30
Score = 26.3 bits (58), Expect = 9.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNNNNN 82
++ ++ N +N ++ N N N
Sbjct: 6 RQNVGTHSTQNMVSNGSSLNYFNIN 30
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling
factor, TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 27.4 bits (60), Expect = 3.7
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 19 DWKKAKKKEKKKKEKKAK---KKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNN 75
W +A++K +K A ++ K+ K +++ + ++ +
Sbjct: 4 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 63
Query: 76 NNNNNNNNNNNEEKGTFLYKMAA 98
N ++ +
Sbjct: 64 INAVLSDMCQPLAMDRLVCGDVG 86
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 27.3 bits (60), Expect = 3.8
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNN 66
K ++ + K ++ E+ + + K
Sbjct: 47 KDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKP 89
Score = 27.3 bits (60), Expect = 4.2
Identities = 4/53 (7%), Positives = 12/53 (22%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNN 72
++ + K K + + + K K + +
Sbjct: 70 VEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTKET 122
Score = 26.5 bits (58), Expect = 6.3
Identities = 3/51 (5%), Positives = 11/51 (21%)
Query: 19 DWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNN 69
+++ + K+ + + K K +
Sbjct: 72 EYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTKET 122
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.6 bits (60), Expect = 3.9
Identities = 14/110 (12%), Positives = 33/110 (30%)
Query: 1 MDSSTKHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKK 60
+D++ K + + E++ K +K K K +K K +
Sbjct: 109 VDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAI 168
Query: 61 KNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYVAEI 110
+ + N N+ + N + K + +A + +
Sbjct: 169 AEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMV 218
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 26.1 bits (57), Expect = 4.2
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 20 WKKAKKKEKKKKEKKAKKKEKKKEKKK 46
W +K+K K + + + + E+K
Sbjct: 59 WNDLSEKKKAKYKAREAALKAQSERKS 85
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 27.7 bits (61), Expect = 4.4
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 13/86 (15%)
Query: 336 TVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPMLDT 395
FLVL +++G +F + YY L T
Sbjct: 9 LYFLVLGFL----------ALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGL-T 57
Query: 396 FHLWGTLYFYAAISVVGTLYMYFVMP 421
H + + M ++
Sbjct: 58 LHGVLNAIVFTQLFAQAI--MVYLPA 81
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 27.8 bits (60), Expect = 4.6
Identities = 8/63 (12%), Positives = 29/63 (46%)
Query: 24 KKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNNNNNNNNNN 83
+ K K A + ++++ ++ E +K K+ + K+ N + +++ + ++ +
Sbjct: 7 RTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSA 66
Query: 84 NNN 86
+
Sbjct: 67 DQQ 69
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 27.5 bits (61), Expect = 4.6
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAAPLVLVLTYV 107
K ++ N +N N+ N + + K + L V
Sbjct: 468 KNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDV 517
Score = 26.8 bits (59), Expect = 8.7
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 55 KKKKKKKNNNNNNNNNNNNNNNNNNNNNNNNNEE 88
K ++ + N +N N+ N + + + E
Sbjct: 468 KNERIEYNTQSNYIENDFPINELILDTDLISKIE 501
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.4 bits (58), Expect = 4.8
Identities = 7/33 (21%), Positives = 23/33 (69%)
Query: 25 KKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKK 57
+ K + ++A+ ++K +EK ++E+ ++ ++K+
Sbjct: 101 SESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKR 133
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 25.9 bits (57), Expect = 4.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKK 54
KK + ++ K K +KK E KK+K+
Sbjct: 57 KKGVEAGDFEQPKGPAGAVKLAKKKSPEVKKEKE 90
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.6 bits (58), Expect = 5.4
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 41 KKEKKKKEKKKKKKKKKKKKK 61
K K++ + + + + +K
Sbjct: 160 PKPKREAFLEANRAELVRFQK 180
Score = 26.6 bits (58), Expect = 5.5
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 25 KKEKKKKEKKAKKKEKKKEKKK 46
K K++ +A + E + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 26.3 bits (57), Expect = 7.6
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 34 KAKKKEKKKEKKKKEKKKKKKKKK 57
+ K +++ + + + +K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 27.0 bits (60), Expect = 5.4
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 451 KKRHAARVEGQEEVKGEDN---FGMEGEDGKYISRVV-----GTLYMYFVMPETEGRTLR 502
KK A+VE ++ E+ F E ++VV + + P + R +R
Sbjct: 59 KKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVR 118
Query: 503 DIEEHFADKGKTFVTNIRRAEKK 525
K K FVTN RA ++
Sbjct: 119 -----RQAKEKVFVTNCLRALRQ 136
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 27.0 bits (59), Expect = 5.5
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNN 64
K K+ + + + + + KK++ K K + +
Sbjct: 118 LKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTED 161
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 27.0 bits (59), Expect = 6.0
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 21 KKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKK 55
++AK + + K EK + + + + +++
Sbjct: 214 ERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
Score = 26.7 bits (58), Expect = 7.2
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 6 KHQIGTFTEPTPLDWKKAKKKEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKK 59
E ++ K + E EK +E + + + +++
Sbjct: 195 TKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 25.1 bits (55), Expect = 6.2
Identities = 2/29 (6%), Positives = 17/29 (58%)
Query: 37 KKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
++ +++++K+ ++ ++ ++K +
Sbjct: 3 EEWRRRQEKRLKELLALAERSQRKLASPG 31
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.6 bits (57), Expect = 6.4
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 22 KAKKKEKKKKEKKAKKKEKKKEKKKKEKKK 51
+ + + + +EKK ++ +++ K K
Sbjct: 140 QQRIRRQLAREKKLYANMFERLAEEENKAK 169
Score = 26.6 bits (57), Expect = 6.8
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 29 KKKEKKAKKKEKKKEKKKKEKKKKKKKKKK 58
+++ ++ +EKK E+ +++ K K
Sbjct: 140 QQRIRRQLAREKKLYANMFERLAEEENKAK 169
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi
[TaxId: 556]}
Length = 400
Score = 27.0 bits (58), Expect = 6.6
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 61 KNNNNNNNNNNNNNNNNNNNNNNNNNE 87
+NN + + + +N + +N+ +
Sbjct: 311 RNNVSLSASVTVSNADAKSNSWDTGPA 337
>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
different strains [TaxId: 11320]}
Length = 314
Score = 26.6 bits (59), Expect = 7.4
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 58 KKKKNNNNNNNNNNNNNNNNNN-------NNNNNNNEEKGTFLYKMAAPLVLVLT----- 105
N + N + +++ + E+ T LY L+ V +
Sbjct: 143 SNTDNAAFPQMTKSYKNTRKDPALIIWGIHHSGSTTEQ--TKLYGSGNKLITVGSSNYQQ 200
Query: 106 -YVAEI-TQPHLRG 117
+V +P + G
Sbjct: 201 SFVPSPGARPQVNG 214
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.6 bits (58), Expect = 7.5
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 36 KKKEKKKEKKKKEKKKKKKKKKKKKKNNNN 65
++ + E KKK+ + + ++ N+
Sbjct: 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHR 30
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 25.7 bits (56), Expect = 8.2
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 26 KEKKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+ K K + + E+KK K K ++ + K+
Sbjct: 92 RAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 127
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 25.2 bits (55), Expect = 8.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 34 KAKKKEKKKEKKKKEKKKKKKKKKKKKK 61
+A+ E + KK +K K + +++
Sbjct: 53 QAEVVEHGRGKKIYIRKYKSGVQYRRRT 80
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 25.9 bits (57), Expect = 9.6
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 451 KKRHAARVEGQEEVKGEDN---FGMEGEDGKYISRVV--GTLYMYFVMPETEGRTLRDIE 505
KK A+VE ++ ED F +RV + + + +R I
Sbjct: 59 KKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIR 118
Query: 506 EHFADKGKTFVTNIRRAEKK 525
+ K + FVTN RA ++
Sbjct: 119 R--SAKERVFVTNALRALRQ 136
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 26.2 bits (58), Expect = 9.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 62 NNNNNNNNNNNNNNNNNNNNNN 83
N+ N+ + +NN ++
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDT 238
Score = 26.2 bits (58), Expect = 9.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 63 NNNNNNNNNNNNNNNNNNNNNN 84
N+ N+ + +NN ++
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDT 238
Score = 26.2 bits (58), Expect = 9.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 64 NNNNNNNNNNNNNNNNNNNNNN 85
N+ N+ + +NN ++
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDT 238
Score = 26.2 bits (58), Expect = 9.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 65 NNNNNNNNNNNNNNNNNNNNNN 86
N+ N+ + +NN ++
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDT 238
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 25.3 bits (55), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 139 SFLHWRS--AAILNLLFPILALCALYFIPESPH 169
S LHWR+ AA + L+ +LA L + E
Sbjct: 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAERGA 33
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 26.2 bits (57), Expect = 9.9
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 31/154 (20%)
Query: 273 YFATLLLGVAELGGALLCVVLIHYTGKRPLALISTGGSAACFIVVAVYAQFHLSYGWDSP 332
+FA+L LG +L PL ++ + + V A H+S +P
Sbjct: 12 FFASLFYVFFGLGASLR-------WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNP 64
Query: 333 LVPTVFLVLAAFLTHICIRLLPWMLIGEVFPNNIRATASGASGSSSYIFAFAVNKLYYPM 392
V L+G A + A + + P
Sbjct: 65 AVT------------------FAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPA 106
Query: 393 LDTFHLWGTLY------FYAAISVVGTLYMYFVM 420
+ TL+ + + TL +
Sbjct: 107 VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCI 140
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 26.4 bits (57), Expect = 9.9
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 62 NNNNNNNNNNNNNNNNNNNNNNNNNEEKGTFLYKMAA 98
+ N +NN N +N E + +++
Sbjct: 311 TDAGGPNVPVHNNGNLECFASNWKCEHRWSYIAGGVD 347
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme
disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 26.3 bits (58), Expect = 9.9
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 28 KKKKEKKAKKKEKKKEKKKKEKKKKKKKKKKKKKNNNNNNNNNNNNNN 75
KK K K +K K K+K + ++ +
Sbjct: 15 KKSDVKTYFTTVAAKLEKTKTDLNSLPKEKSDISSTTGKPDSTGSVGT 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,045,960
Number of extensions: 100877
Number of successful extensions: 1908
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1372
Number of HSP's successfully gapped: 254
Length of query: 553
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 463
Effective length of database: 1,171,896
Effective search space: 542587848
Effective search space used: 542587848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)