Query psy15865
Match_columns 156
No_of_seqs 131 out of 1490
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:19:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.8 2E-18 4.3E-23 138.8 8.4 99 2-107 131-236 (485)
2 KOG0254|consensus 99.6 6.4E-15 1.4E-19 120.2 10.5 96 1-103 156-256 (513)
3 PF00083 Sugar_tr: Sugar (and 99.6 2.1E-17 4.6E-22 131.9 -6.7 95 1-102 116-217 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.6 3.6E-14 7.8E-19 115.3 11.4 94 2-101 130-250 (502)
5 TIGR01299 synapt_SV2 synaptic 99.5 1.1E-13 2.4E-18 117.0 10.5 95 2-103 270-381 (742)
6 KOG0253|consensus 99.4 1.3E-12 2.7E-17 101.7 8.9 95 1-97 180-278 (528)
7 KOG0255|consensus 99.4 1.6E-12 3.5E-17 106.0 8.2 94 2-95 186-280 (521)
8 TIGR00898 2A0119 cation transp 99.3 9.3E-12 2E-16 100.9 10.5 93 2-94 195-288 (505)
9 PRK10077 xylE D-xylose transpo 99.3 3.6E-11 7.8E-16 96.7 10.4 84 2-85 135-230 (479)
10 PRK10642 proline/glycine betai 99.0 1.3E-09 2.8E-14 88.5 8.7 79 2-80 133-223 (490)
11 PRK10642 proline/glycine betai 99.0 7.6E-10 1.6E-14 89.9 7.0 88 6-100 361-458 (490)
12 PRK09952 shikimate transporter 98.9 4.1E-09 8.8E-14 84.5 8.4 79 2-80 140-230 (438)
13 TIGR00879 SP MFS transporter, 98.9 1.7E-08 3.8E-13 80.0 10.4 82 3-84 143-231 (481)
14 PRK10406 alpha-ketoglutarate t 98.8 6.7E-08 1.5E-12 77.3 10.0 76 2-77 139-226 (432)
15 TIGR02332 HpaX 4-hydroxyphenyl 98.6 1.2E-07 2.6E-12 75.6 6.3 73 2-74 111-194 (412)
16 KOG0252|consensus 98.5 5.5E-08 1.2E-12 77.8 2.2 82 1-82 158-258 (538)
17 TIGR00891 2A0112 putative sial 98.5 1.6E-06 3.5E-11 67.7 10.1 78 2-79 115-198 (405)
18 TIGR00903 2A0129 major facilit 98.5 6E-07 1.3E-11 70.7 7.3 71 6-76 97-172 (368)
19 PRK15075 citrate-proton sympor 98.3 4.9E-06 1.1E-10 66.6 9.3 77 2-78 132-220 (434)
20 TIGR00883 2A0106 metabolite-pr 98.3 6E-06 1.3E-10 64.0 8.4 78 2-79 111-200 (394)
21 PRK12307 putative sialic acid 98.2 7.1E-06 1.5E-10 65.1 8.5 77 2-78 121-201 (426)
22 TIGR00895 2A0115 benzoate tran 98.2 9.2E-06 2E-10 63.1 7.8 78 2-79 120-202 (398)
23 PRK11551 putative 3-hydroxyphe 98.2 2.5E-05 5.5E-10 61.5 10.2 76 4-79 120-200 (406)
24 PRK11663 regulatory protein Uh 98.1 2.7E-05 5.8E-10 62.4 8.8 75 2-76 126-205 (434)
25 PRK03893 putative sialic acid 98.0 3.9E-05 8.4E-10 62.1 9.5 77 3-79 124-204 (496)
26 COG2814 AraJ Arabinose efflux 97.9 4.7E-05 1E-09 60.5 7.5 69 2-70 116-189 (394)
27 KOG2533|consensus 97.9 1.6E-05 3.4E-10 65.1 4.3 73 2-74 149-232 (495)
28 PRK15403 multidrug efflux syst 97.9 0.00013 2.7E-09 58.3 9.4 70 5-74 122-196 (413)
29 TIGR00894 2A0114euk Na(+)-depe 97.9 3E-05 6.5E-10 62.5 5.8 73 2-74 146-224 (465)
30 PRK11010 ampG muropeptide tran 97.9 7E-05 1.5E-09 61.2 7.9 69 6-74 126-199 (491)
31 PRK03545 putative arabinose tr 97.9 5.9E-05 1.3E-09 59.4 7.2 69 5-73 115-188 (390)
32 TIGR00893 2A0114 d-galactonate 97.9 4.8E-05 1E-09 58.7 6.6 72 3-74 98-174 (399)
33 PRK10213 nepI ribonucleoside t 97.8 0.00011 2.4E-09 58.2 8.1 72 3-74 124-200 (394)
34 TIGR00712 glpT glycerol-3-phos 97.8 0.00016 3.5E-09 57.9 8.9 72 4-75 135-212 (438)
35 TIGR00880 2_A_01_02 Multidrug 97.8 0.00016 3.4E-09 47.7 7.1 69 4-72 68-141 (141)
36 TIGR00901 2A0125 AmpG-related 97.7 0.00015 3.3E-09 56.2 7.7 68 6-73 102-182 (356)
37 PRK11195 lysophospholipid tran 97.7 0.00039 8.5E-09 55.1 10.1 72 3-74 104-178 (393)
38 PRK11902 ampG muropeptide tran 97.7 0.00019 4.1E-09 56.8 8.2 69 6-74 113-186 (402)
39 TIGR01299 synapt_SV2 synaptic 97.7 0.00016 3.4E-09 62.1 7.9 71 3-73 664-737 (742)
40 TIGR00805 oat sodium-independe 97.7 0.00015 3.3E-09 61.2 7.4 71 2-72 187-283 (633)
41 TIGR00710 efflux_Bcr_CflA drug 97.7 0.00025 5.4E-09 55.1 8.1 71 4-74 110-185 (385)
42 TIGR00711 efflux_EmrB drug res 97.7 7.8E-05 1.7E-09 60.0 5.3 72 3-74 106-182 (485)
43 PTZ00207 hypothetical protein; 97.7 0.00033 7.1E-09 58.7 9.0 86 5-91 138-229 (591)
44 PF07690 MFS_1: Major Facilita 97.6 9.6E-05 2.1E-09 56.5 5.1 72 3-74 101-177 (352)
45 PRK10091 MFS transport protein 97.6 0.00031 6.6E-09 55.3 7.2 69 5-73 109-182 (382)
46 PRK14995 methyl viologen resis 97.6 0.00036 7.7E-09 57.0 7.7 69 6-74 113-187 (495)
47 PRK11102 bicyclomycin/multidru 97.6 0.00037 8.1E-09 54.2 7.5 69 5-73 97-170 (377)
48 TIGR00900 2A0121 H+ Antiporter 97.6 0.0004 8.6E-09 53.3 7.6 63 4-66 109-175 (365)
49 PRK11273 glpT sn-glycerol-3-ph 97.5 0.00066 1.4E-08 54.7 8.6 72 4-75 137-214 (452)
50 PRK10473 multidrug efflux syst 97.4 0.001 2.2E-08 52.3 7.9 70 4-73 108-182 (392)
51 TIGR00899 2A0120 sugar efflux 97.3 0.00067 1.4E-08 52.6 6.6 72 4-75 104-182 (375)
52 PRK10489 enterobactin exporter 97.3 0.00068 1.5E-08 53.8 6.6 69 6-74 129-201 (417)
53 TIGR00881 2A0104 phosphoglycer 97.3 0.00019 4E-09 55.3 2.9 73 2-74 98-176 (379)
54 KOG2532|consensus 97.3 0.00044 9.6E-09 56.4 5.0 73 2-74 143-221 (466)
55 PLN00028 nitrate transmembrane 97.3 0.0012 2.5E-08 53.8 7.4 66 8-73 144-223 (476)
56 KOG2615|consensus 97.3 0.00029 6.2E-09 55.8 3.6 70 3-72 136-216 (451)
57 cd06174 MFS The Major Facilita 97.3 0.0016 3.6E-08 49.4 7.8 69 2-70 102-174 (352)
58 PRK15402 multidrug efflux syst 97.3 0.0024 5.2E-08 50.5 8.9 70 5-74 119-193 (406)
59 TIGR00886 2A0108 nitrite extru 97.2 0.0013 2.8E-08 50.9 7.1 71 4-74 107-193 (366)
60 COG2271 UhpC Sugar phosphate p 97.2 0.00023 5E-09 56.9 2.8 72 3-74 133-211 (448)
61 KOG1330|consensus 97.2 2.7E-05 5.8E-10 62.7 -2.6 72 3-74 137-214 (493)
62 TIGR00889 2A0110 nucleoside tr 97.2 0.0016 3.5E-08 52.1 7.5 68 5-72 326-405 (418)
63 PRK12382 putative transporter; 97.2 0.0012 2.7E-08 51.8 6.6 68 6-73 131-202 (392)
64 PRK06814 acylglycerophosphoeth 97.1 0.0014 3E-08 58.6 7.1 70 4-73 125-198 (1140)
65 PRK05122 major facilitator sup 97.1 0.0015 3.3E-08 51.4 6.3 70 4-73 129-202 (399)
66 PRK10504 putative transporter; 97.1 0.0023 4.9E-08 51.6 7.4 71 3-73 114-189 (471)
67 PRK10077 xylE D-xylose transpo 97.1 0.0034 7.4E-08 50.5 8.3 68 6-73 383-461 (479)
68 PRK11646 multidrug resistance 97.0 0.0036 7.9E-08 49.7 8.0 68 5-72 117-188 (400)
69 PRK09556 uhpT sugar phosphate 97.0 0.00047 1E-08 55.8 2.8 72 3-74 138-217 (467)
70 PRK09874 drug efflux system pr 97.0 0.0054 1.2E-07 48.2 8.6 70 4-73 123-197 (408)
71 TIGR00898 2A0119 cation transp 97.0 0.0018 3.8E-08 52.7 5.9 70 4-73 427-498 (505)
72 PRK15011 sugar efflux transpor 97.0 0.0039 8.4E-08 49.2 7.6 66 6-72 324-393 (393)
73 PRK11652 emrD multidrug resist 97.0 0.0043 9.4E-08 48.8 7.7 69 6-74 115-188 (394)
74 PF06609 TRI12: Fungal trichot 96.9 0.0034 7.4E-08 52.7 7.1 65 8-72 151-221 (599)
75 PRK03699 putative transporter; 96.9 0.006 1.3E-07 48.2 7.9 63 4-66 112-179 (394)
76 PRK11043 putative transporter; 96.9 0.0061 1.3E-07 48.0 7.7 68 6-73 113-184 (401)
77 PRK08633 2-acyl-glycerophospho 96.8 0.0036 7.8E-08 55.8 6.9 73 3-75 119-205 (1146)
78 TIGR00806 rfc RFC reduced fola 96.7 0.011 2.4E-07 48.5 8.4 73 7-79 134-212 (511)
79 PRK10207 dipeptide/tripeptide 96.7 0.0069 1.5E-07 49.7 7.2 56 2-57 120-181 (489)
80 PRK10054 putative transporter; 96.7 0.0055 1.2E-07 48.6 6.4 68 5-72 114-185 (395)
81 PRK05122 major facilitator sup 96.7 0.0093 2E-07 46.9 7.5 67 5-71 320-390 (399)
82 cd06174 MFS The Major Facilita 96.7 0.0078 1.7E-07 45.6 6.9 68 2-69 280-351 (352)
83 TIGR00885 fucP L-fucose:H+ sym 96.7 0.0094 2E-07 47.7 7.6 68 5-72 112-211 (410)
84 PRK15011 sugar efflux transpor 96.6 0.0099 2.1E-07 46.9 7.2 68 6-73 124-198 (393)
85 TIGR00892 2A0113 monocarboxyla 96.6 0.008 1.7E-07 48.6 6.8 60 6-66 127-190 (455)
86 TIGR00892 2A0113 monocarboxyla 96.5 0.0089 1.9E-07 48.4 6.8 62 3-64 349-415 (455)
87 TIGR00890 2A0111 Oxalate/Forma 96.5 0.0088 1.9E-07 45.9 6.4 67 6-73 110-181 (377)
88 TIGR00879 SP MFS transporter, 96.5 0.0039 8.6E-08 49.4 4.5 68 6-73 402-474 (481)
89 TIGR00890 2A0111 Oxalate/Forma 96.4 0.0095 2.1E-07 45.8 5.8 60 3-62 311-374 (377)
90 TIGR00893 2A0114 d-galactonate 96.3 0.02 4.3E-07 44.1 7.4 63 4-66 328-395 (399)
91 TIGR00887 2A0109 phosphate:H+ 96.3 0.014 3E-07 47.7 6.8 69 5-73 410-492 (502)
92 PRK11551 putative 3-hydroxyphe 96.3 0.013 2.8E-07 46.1 6.2 69 4-72 325-398 (406)
93 PRK12382 putative transporter; 96.2 0.025 5.4E-07 44.4 7.6 62 5-66 320-385 (392)
94 TIGR01272 gluP glucose/galacto 96.1 0.033 7.2E-07 42.9 7.5 69 4-72 27-117 (310)
95 PRK09584 tppB putative tripept 96.0 0.035 7.5E-07 45.7 7.6 59 3-61 128-192 (500)
96 PRK10133 L-fucose transporter; 95.9 0.045 9.8E-07 44.2 7.8 41 3-43 133-173 (438)
97 TIGR00899 2A0120 sugar efflux 95.9 0.036 7.8E-07 42.9 7.1 66 5-71 306-375 (375)
98 TIGR00924 yjdL_sub1_fam amino 95.9 0.029 6.2E-07 45.8 6.7 65 2-66 117-188 (475)
99 PRK09952 shikimate transporter 95.9 0.037 8E-07 44.5 7.2 69 5-73 361-436 (438)
100 TIGR02718 sider_RhtX_FptX side 95.9 0.063 1.4E-06 42.2 8.3 61 11-71 121-185 (390)
101 PRK09705 cynX putative cyanate 95.8 0.043 9.3E-07 43.4 6.9 60 4-64 114-178 (393)
102 PRK09528 lacY galactoside perm 95.7 0.019 4.1E-07 45.7 4.9 67 7-73 335-407 (420)
103 PRK03633 putative MFS family t 95.6 0.065 1.4E-06 42.0 7.4 65 4-68 302-370 (381)
104 TIGR01301 GPH_sucrose GPH fami 95.4 0.071 1.5E-06 43.8 7.1 67 7-73 134-222 (477)
105 PRK15462 dipeptide/tripeptide 95.4 0.061 1.3E-06 44.3 6.7 59 3-61 116-180 (493)
106 PRK09874 drug efflux system pr 95.3 0.031 6.7E-07 43.9 4.7 63 4-66 328-394 (408)
107 TIGR00896 CynX cyanate transpo 95.3 0.068 1.5E-06 41.4 6.5 55 6-61 106-166 (355)
108 COG2223 NarK Nitrate/nitrite t 95.3 0.059 1.3E-06 43.2 6.1 74 1-75 118-199 (417)
109 PRK15034 nitrate/nitrite trans 95.3 0.15 3.1E-06 41.8 8.5 72 2-73 142-236 (462)
110 TIGR00792 gph sugar (Glycoside 95.0 0.077 1.7E-06 42.1 6.3 64 10-73 122-198 (437)
111 PRK11273 glpT sn-glycerol-3-ph 95.0 0.13 2.8E-06 41.5 7.5 59 9-67 369-432 (452)
112 PRK11128 putative 3-phenylprop 94.9 0.12 2.7E-06 40.5 7.1 66 5-72 112-181 (382)
113 PRK10489 enterobactin exporter 94.9 0.11 2.5E-06 41.1 6.8 68 6-73 331-403 (417)
114 TIGR00924 yjdL_sub1_fam amino 94.9 0.16 3.6E-06 41.4 7.8 59 4-62 398-460 (475)
115 TIGR00897 2A0118 polyol permea 94.5 0.31 6.7E-06 38.6 8.4 38 6-43 124-162 (402)
116 PRK11010 ampG muropeptide tran 94.3 0.17 3.7E-06 41.5 6.7 68 5-72 334-405 (491)
117 PRK03893 putative sialic acid 94.3 0.16 3.4E-06 41.2 6.4 54 5-58 384-441 (496)
118 KOG0252|consensus 94.1 0.034 7.3E-07 45.4 2.1 70 4-73 423-501 (538)
119 TIGR00902 2A0127 phenyl propri 94.0 0.15 3.3E-06 40.0 5.7 54 5-60 112-169 (382)
120 KOG2816|consensus 93.9 0.18 3.9E-06 41.3 6.0 71 3-73 128-203 (463)
121 KOG0569|consensus 93.9 0.41 8.8E-06 39.5 8.0 69 3-72 384-457 (485)
122 PRK09705 cynX putative cyanate 93.8 0.44 9.5E-06 37.7 8.0 71 3-73 308-385 (393)
123 PF03825 Nuc_H_symport: Nucleo 93.8 0.38 8.2E-06 38.6 7.6 62 4-65 318-390 (400)
124 PRK11663 regulatory protein Uh 93.7 0.22 4.8E-06 39.9 6.1 57 9-65 359-419 (434)
125 TIGR02718 sider_RhtX_FptX side 93.2 0.47 1E-05 37.3 7.2 60 6-65 322-386 (390)
126 TIGR00788 fbt folate/biopterin 93.2 0.11 2.4E-06 42.3 3.8 66 7-73 140-212 (468)
127 PRK09584 tppB putative tripept 93.1 0.53 1.1E-05 38.8 7.5 40 4-43 399-438 (500)
128 PRK12307 putative sialic acid 93.0 0.44 9.6E-06 37.7 6.8 41 5-45 339-379 (426)
129 PRK03633 putative MFS family t 92.8 0.59 1.3E-05 36.6 7.2 40 6-45 113-152 (381)
130 TIGR00788 fbt folate/biopterin 92.7 0.64 1.4E-05 37.9 7.6 66 5-71 369-447 (468)
131 KOG3764|consensus 92.7 0.098 2.1E-06 42.1 2.6 66 4-69 176-246 (464)
132 TIGR00882 2A0105 oligosacchari 92.5 0.36 7.9E-06 38.0 5.8 68 6-74 118-188 (396)
133 PRK03545 putative arabinose tr 92.4 1.1 2.3E-05 35.3 8.2 60 6-66 313-376 (390)
134 PF11700 ATG22: Vacuole efflux 92.4 0.83 1.8E-05 37.6 7.8 71 1-71 394-469 (477)
135 TIGR00897 2A0118 polyol permea 92.3 0.89 1.9E-05 36.0 7.7 59 10-69 338-400 (402)
136 TIGR00903 2A0129 major facilit 92.3 0.48 1E-05 37.4 6.1 62 5-66 298-361 (368)
137 PRK08633 2-acyl-glycerophospho 92.2 0.64 1.4E-05 41.7 7.4 70 4-73 339-414 (1146)
138 PRK10406 alpha-ketoglutarate t 92.1 0.44 9.5E-06 38.1 5.7 63 7-70 356-424 (432)
139 KOG0255|consensus 91.8 0.66 1.4E-05 38.1 6.6 71 4-74 423-497 (521)
140 PRK11646 multidrug resistance 91.8 0.26 5.5E-06 39.2 4.1 60 6-65 316-383 (400)
141 TIGR00712 glpT glycerol-3-phos 91.7 0.24 5.1E-06 39.8 3.8 63 10-72 368-436 (438)
142 PRK11902 ampG muropeptide tran 91.5 0.63 1.4E-05 36.8 6.0 60 7-66 327-386 (402)
143 TIGR00891 2A0112 putative sial 91.5 0.4 8.6E-06 37.3 4.8 42 4-45 345-386 (405)
144 PF05977 MFS_3: Transmembrane 91.4 1.3 2.9E-05 36.8 8.0 55 6-60 326-384 (524)
145 TIGR00883 2A0106 metabolite-pr 91.3 0.16 3.5E-06 39.2 2.4 57 4-60 329-391 (394)
146 PRK09528 lacY galactoside perm 91.1 0.31 6.8E-06 38.7 3.9 53 20-72 138-194 (420)
147 PF00083 Sugar_tr: Sugar (and 90.8 0.018 3.9E-07 46.1 -3.4 68 5-72 367-439 (451)
148 PRK10504 putative transporter; 90.7 1.2 2.6E-05 35.9 7.1 40 5-44 371-410 (471)
149 TIGR00881 2A0104 phosphoglycer 90.7 0.26 5.6E-06 37.8 3.0 46 6-51 329-378 (379)
150 PRK09556 uhpT sugar phosphate 90.4 1.3 2.8E-05 35.8 7.0 58 9-66 371-445 (467)
151 PRK06814 acylglycerophosphoeth 89.5 1 2.2E-05 40.6 6.2 54 5-58 352-410 (1140)
152 PF03209 PUCC: PUCC protein; 89.0 4.3 9.3E-05 32.8 8.6 42 4-45 106-147 (403)
153 KOG0253|consensus 88.0 0.16 3.4E-06 40.9 0.1 70 2-71 449-520 (528)
154 KOG3626|consensus 88.0 1.5 3.2E-05 38.0 5.8 68 5-72 255-345 (735)
155 TIGR00902 2A0127 phenyl propri 87.2 3.6 7.8E-05 32.3 7.3 61 3-65 309-374 (382)
156 PF03092 BT1: BT1 family; Int 87.1 6.3 0.00014 31.9 8.8 67 8-74 339-417 (433)
157 KOG2325|consensus 87.0 3.1 6.7E-05 34.5 6.9 72 3-74 145-234 (488)
158 PF13347 MFS_2: MFS/sugar tran 86.4 1.6 3.5E-05 34.8 5.0 62 10-71 126-200 (428)
159 PLN00028 nitrate transmembrane 86.3 0.76 1.6E-05 37.5 3.2 59 11-70 372-433 (476)
160 PRK03699 putative transporter; 86.3 2.1 4.5E-05 33.7 5.6 64 5-69 312-379 (394)
161 KOG3762|consensus 85.3 2.1 4.5E-05 36.0 5.1 66 2-67 474-544 (618)
162 PRK10207 dipeptide/tripeptide 84.9 5.4 0.00012 32.8 7.5 40 4-43 396-435 (489)
163 COG2807 CynX Cyanate permease 84.8 4.2 9.2E-05 32.5 6.4 64 3-67 115-183 (395)
164 PRK09669 putative symporter Ya 84.7 6.4 0.00014 31.6 7.8 62 10-71 132-206 (444)
165 KOG0254|consensus 84.7 3.3 7.1E-05 34.1 6.1 68 5-72 413-486 (513)
166 PRK10054 putative transporter; 84.6 3 6.6E-05 33.0 5.8 67 6-73 317-388 (395)
167 PRK11462 putative transporter; 83.4 7.1 0.00015 31.8 7.5 63 10-72 132-207 (460)
168 TIGR01301 GPH_sucrose GPH fami 83.4 3.3 7.2E-05 34.2 5.6 68 6-73 399-475 (477)
169 TIGR00894 2A0114euk Na(+)-depe 83.2 4.7 0.0001 32.4 6.4 57 12-69 386-449 (465)
170 COG0477 ProP Permeases of the 83.0 8.4 0.00018 27.6 7.2 59 3-61 110-176 (338)
171 PF05977 MFS_3: Transmembrane 82.9 15 0.00032 30.7 9.3 60 5-64 121-184 (524)
172 TIGR02332 HpaX 4-hydroxyphenyl 82.8 1.5 3.2E-05 35.0 3.3 50 10-59 356-410 (412)
173 PF06779 DUF1228: Protein of u 81.6 10 0.00022 23.6 7.7 62 5-66 12-74 (85)
174 TIGR00792 gph sugar (Glycoside 81.1 7.9 0.00017 30.6 6.9 41 4-44 328-375 (437)
175 TIGR00889 2A0110 nucleoside tr 80.4 4.3 9.4E-05 32.5 5.2 44 30-74 141-184 (418)
176 PF11151 DUF2929: Protein of u 79.8 9.2 0.0002 21.9 5.2 40 34-73 17-56 (57)
177 COG2814 AraJ Arabinose efflux 79.4 11 0.00025 30.3 7.2 60 7-66 317-382 (394)
178 PF11700 ATG22: Vacuole efflux 79.0 20 0.00043 29.6 8.7 68 7-74 146-252 (477)
179 PRK11652 emrD multidrug resist 78.7 7.4 0.00016 30.4 6.0 42 4-46 316-357 (394)
180 PF00854 PTR2: POT family; In 77.8 19 0.00041 28.2 8.0 65 2-66 48-119 (372)
181 PF01770 Folate_carrier: Reduc 77.5 14 0.0003 30.1 7.1 72 9-80 115-192 (412)
182 PRK10429 melibiose:sodium symp 77.2 16 0.00034 29.7 7.6 63 10-72 129-204 (473)
183 PRK10213 nepI ribonucleoside t 76.9 18 0.00038 28.6 7.7 56 5-61 323-382 (394)
184 KOG3810|consensus 76.6 7.4 0.00016 31.2 5.2 75 9-83 116-196 (433)
185 PRK09848 glucuronide transport 75.6 20 0.00044 28.7 7.8 39 5-43 337-382 (448)
186 PF03137 OATP: Organic Anion T 74.3 1 2.2E-05 37.7 0.0 41 4-44 158-198 (539)
187 PF02487 CLN3: CLN3 protein; 73.4 5.9 0.00013 32.0 4.1 44 2-45 350-393 (402)
188 PRK15462 dipeptide/tripeptide 72.7 30 0.00066 28.7 8.2 41 4-44 394-435 (493)
189 TIGR00882 2A0105 oligosacchari 72.2 9.9 0.00022 29.8 5.2 54 10-63 330-388 (396)
190 PF03092 BT1: BT1 family; Int 72.2 9.4 0.0002 30.9 5.1 61 11-71 110-177 (433)
191 PRK09669 putative symporter Ya 71.5 22 0.00048 28.5 7.1 40 4-43 336-382 (444)
192 KOG2504|consensus 71.4 5.7 0.00012 33.0 3.7 56 8-64 156-215 (509)
193 PRK10697 DNA-binding transcrip 70.6 15 0.00032 24.5 4.8 44 49-92 37-86 (118)
194 PF06813 Nodulin-like: Nodulin 70.0 22 0.00049 26.7 6.4 61 11-72 120-184 (250)
195 COG2211 MelB Na+/melibiose sym 69.9 25 0.00054 29.1 7.0 62 11-72 136-210 (467)
196 PF13374 TPR_10: Tetratricopep 69.6 8.2 0.00018 19.4 3.0 28 75-102 11-38 (42)
197 PRK11128 putative 3-phenylprop 69.6 29 0.00062 27.1 7.3 60 6-67 312-376 (382)
198 COG0738 FucP Fucose permease [ 69.3 23 0.0005 28.8 6.5 69 5-73 122-215 (422)
199 PF04120 Iron_permease: Low af 69.3 33 0.00071 23.3 7.3 21 50-70 41-61 (132)
200 PF14715 FixP_N: N-terminal do 69.3 10 0.00022 21.2 3.3 26 47-72 23-48 (51)
201 PRK10091 MFS transport protein 68.8 29 0.00064 27.1 7.2 50 12-63 315-369 (382)
202 KOG2532|consensus 66.8 13 0.00028 30.6 4.9 52 17-68 387-445 (466)
203 PRK11195 lysophospholipid tran 66.8 33 0.00072 27.0 7.1 53 6-58 312-370 (393)
204 PF08997 UCR_6-4kD: Ubiquinol- 66.6 22 0.00048 20.3 4.3 37 15-51 5-41 (56)
205 PRK15402 multidrug efflux syst 65.5 33 0.00071 26.9 6.9 48 15-62 336-387 (406)
206 PRK10429 melibiose:sodium symp 65.4 39 0.00083 27.5 7.4 38 5-42 342-386 (473)
207 PRK15075 citrate-proton sympor 64.5 18 0.00038 28.9 5.2 22 7-28 351-372 (434)
208 PF06609 TRI12: Fungal trichot 64.3 22 0.00048 30.4 5.9 30 47-76 531-560 (599)
209 PF06645 SPC12: Microsomal sig 63.4 27 0.00059 21.1 4.7 45 27-73 12-57 (76)
210 TIGR02978 phageshock_pspC phag 62.0 41 0.00089 22.4 5.7 30 47-76 30-65 (121)
211 TIGR00926 2A1704 Peptide:H+ sy 62.0 57 0.0012 28.2 8.0 65 2-66 100-178 (654)
212 PF12273 RCR: Chitin synthesis 61.6 4.2 9.1E-05 27.3 1.0 18 49-66 1-18 (130)
213 COG2270 Permeases of the major 59.5 18 0.00039 29.6 4.3 71 1-71 355-430 (438)
214 PF04024 PspC: PspC domain; I 57.9 22 0.00047 20.6 3.4 27 47-73 30-60 (61)
215 TIGR00710 efflux_Bcr_CflA drug 57.8 56 0.0012 25.0 6.9 38 5-43 318-356 (385)
216 PF10183 ESSS: ESSS subunit of 56.9 20 0.00043 23.2 3.5 28 46-73 57-85 (105)
217 PRK11102 bicyclomycin/multidru 55.7 70 0.0015 24.6 7.1 36 8-44 308-344 (377)
218 TIGR00711 efflux_EmrB drug res 54.3 20 0.00044 28.7 4.0 38 7-44 368-405 (485)
219 PF07672 MFS_Mycoplasma: Mycop 54.0 14 0.0003 28.2 2.7 49 19-67 2-59 (267)
220 PF13829 DUF4191: Domain of un 53.0 93 0.002 23.1 7.6 54 41-101 44-99 (224)
221 KOG2504|consensus 51.8 8.6 0.00019 32.0 1.4 66 5-70 406-476 (509)
222 PRK14995 methyl viologen resis 51.4 20 0.00044 29.3 3.6 39 6-44 370-408 (495)
223 TIGR00769 AAA ADP/ATP carrier 50.6 1.3E+02 0.0028 25.0 8.0 38 7-44 149-186 (472)
224 COG3202 ATP/ADP translocase [E 49.3 1.4E+02 0.0029 25.2 7.8 69 10-78 171-257 (509)
225 PF01306 LacY_symp: LacY proto 49.3 67 0.0014 26.2 6.1 61 5-65 330-395 (412)
226 PRK10473 multidrug efflux syst 47.8 83 0.0018 24.5 6.4 47 10-56 313-360 (392)
227 PF10112 Halogen_Hydrol: 5-bro 47.6 1E+02 0.0022 22.0 8.9 57 47-103 28-91 (199)
228 PF15128 T_cell_tran_alt: T-ce 47.1 46 0.00099 20.7 3.7 40 6-50 9-48 (92)
229 PF15050 SCIMP: SCIMP protein 46.9 83 0.0018 21.0 5.1 12 73-84 31-42 (133)
230 KOG0055|consensus 46.3 1.4E+02 0.003 28.0 8.0 31 37-67 797-827 (1228)
231 TIGR00782 ccoP cytochrome c ox 45.7 25 0.00053 26.9 3.0 24 47-70 29-52 (285)
232 COG2271 UhpC Sugar phosphate p 43.2 21 0.00046 29.2 2.4 57 8-64 367-428 (448)
233 PRK03612 spermidine synthase; 42.7 1.3E+02 0.0028 25.2 7.0 22 21-42 147-168 (521)
234 KOG0637|consensus 42.6 8.2 0.00018 31.9 0.0 48 8-55 163-211 (498)
235 KOG2563|consensus 42.3 67 0.0014 26.7 5.0 32 13-44 166-197 (480)
236 KOG1278|consensus 40.7 65 0.0014 27.4 4.8 29 14-42 354-382 (628)
237 TIGR00926 2A1704 Peptide:H+ sy 40.6 1.5E+02 0.0032 25.8 7.1 31 15-45 593-623 (654)
238 TIGR02230 ATPase_gene1 F0F1-AT 40.0 1E+02 0.0022 19.8 6.8 30 31-60 51-88 (100)
239 KOG3764|consensus 38.9 44 0.00095 27.4 3.5 45 20-64 400-448 (464)
240 PF04281 Tom22: Mitochondrial 38.6 1.3E+02 0.0028 20.6 6.4 22 12-33 60-81 (137)
241 COG4291 Predicted membrane pro 38.4 1.6E+02 0.0035 21.7 8.3 53 32-84 27-82 (228)
242 PF05978 UNC-93: Ion channel r 37.7 81 0.0018 21.9 4.4 21 7-27 109-129 (156)
243 PRK11043 putative transporter; 35.7 1.3E+02 0.0027 23.5 5.8 38 6-44 315-352 (401)
244 PHA03048 IMV membrane protein; 35.5 1.2E+02 0.0025 19.2 5.3 21 46-66 41-61 (93)
245 PHA03239 envelope glycoprotein 34.9 2.6E+02 0.0056 23.0 7.9 33 6-43 276-308 (429)
246 PF15061 DUF4538: Domain of un 34.7 39 0.00084 19.4 1.9 21 46-66 3-23 (58)
247 COG2807 CynX Cyanate permease 34.2 2.4E+02 0.0053 22.9 6.9 63 2-66 311-381 (395)
248 PF13428 TPR_14: Tetratricopep 34.0 67 0.0015 16.5 2.8 20 74-93 9-28 (44)
249 PHA03242 envelope glycoprotein 34.0 2.7E+02 0.0058 23.0 10.4 21 85-105 362-382 (428)
250 COG3104 PTR2 Dipeptide/tripept 32.9 31 0.00067 28.8 1.9 62 4-65 134-201 (498)
251 TIGR00986 3a0801s05tom22 mitoc 32.2 1.7E+02 0.0037 20.2 6.3 22 12-33 58-79 (145)
252 COG3104 PTR2 Dipeptide/tripept 32.1 2.1E+02 0.0045 24.1 6.5 40 5-44 412-451 (498)
253 KOG2513|consensus 31.0 2.5E+02 0.0055 24.3 6.8 14 65-78 589-602 (647)
254 TIGR00939 2a57 Equilibrative N 30.8 62 0.0013 26.4 3.3 40 6-45 391-430 (437)
255 PF11168 DUF2955: Protein of u 30.1 66 0.0014 21.8 2.9 21 35-55 8-28 (140)
256 COG1113 AnsP Gamma-aminobutyra 29.3 1.6E+02 0.0034 24.5 5.2 18 61-78 114-131 (462)
257 PF03845 Spore_permease: Spore 28.9 1.5E+02 0.0032 22.8 5.0 12 66-77 105-116 (320)
258 TIGR03750 conj_TIGR03750 conju 27.8 1.8E+02 0.0039 19.1 7.5 12 73-84 67-80 (111)
259 PHA02898 virion envelope prote 27.0 1.7E+02 0.0037 18.4 5.0 21 46-66 42-62 (92)
260 COG4968 PilE Tfp pilus assembl 26.3 2.2E+02 0.0048 19.5 5.2 28 73-100 31-58 (139)
261 KOG4112|consensus 26.1 1.8E+02 0.004 18.5 5.6 22 24-45 24-45 (101)
262 PF02990 EMP70: Endomembrane p 26.1 1.6E+02 0.0034 24.8 4.9 40 14-53 288-334 (521)
263 PHA03237 envelope glycoprotein 26.1 3.7E+02 0.0081 22.1 9.9 21 84-104 364-384 (424)
264 PF14362 DUF4407: Domain of un 25.8 3E+02 0.0066 21.0 6.3 11 17-27 8-18 (301)
265 PF03741 TerC: Integral membra 25.6 2.5E+02 0.0055 20.0 7.5 25 2-26 11-35 (183)
266 COG2270 Permeases of the major 25.0 4E+02 0.0087 22.1 7.5 29 49-77 89-118 (438)
267 PF10961 DUF2763: Protein of u 24.5 98 0.0021 19.5 2.7 22 47-68 15-36 (91)
268 KOG2615|consensus 24.3 1E+02 0.0022 25.3 3.3 39 6-44 371-409 (451)
269 PHA02680 ORF090 IMV phosphoryl 23.8 2E+02 0.0043 18.1 6.2 20 47-66 44-63 (91)
270 PF03597 CcoS: Cytochrome oxid 23.8 1.3E+02 0.0029 16.2 3.4 10 75-84 23-32 (45)
271 PRK11875 psbT photosystem II r 23.7 1.1E+02 0.0024 15.1 2.4 21 52-74 8-28 (31)
272 PTZ00207 hypothetical protein; 23.5 4.3E+02 0.0092 22.7 7.1 74 2-76 467-559 (591)
273 TIGR00912 2A0309 spore germina 23.2 2.4E+02 0.0053 21.8 5.4 12 66-77 107-118 (359)
274 COG1983 PspC Putative stress-r 23.2 1.6E+02 0.0035 17.6 3.3 11 63-73 54-64 (70)
275 TIGR00896 CynX cyanate transpo 22.8 3.5E+02 0.0075 20.6 8.2 48 6-53 21-69 (355)
276 COG4698 Uncharacterized protei 22.5 1.1E+02 0.0024 22.0 2.9 15 48-62 11-25 (197)
277 PF05767 Pox_A14: Poxvirus vir 22.4 2.1E+02 0.0047 18.0 5.6 20 47-66 43-62 (92)
278 PF10272 Tmpp129: Putative tra 22.3 2.1E+02 0.0046 22.9 4.7 42 21-62 39-94 (358)
279 PF12854 PPR_1: PPR repeat 22.2 88 0.0019 15.3 1.8 14 76-89 17-30 (34)
280 cd00925 Cyt_c_Oxidase_VIa Cyto 21.9 1E+02 0.0022 19.2 2.4 20 46-65 14-33 (86)
281 TIGR00885 fucP L-fucose:H+ sym 21.7 4.2E+02 0.009 21.1 7.6 47 25-71 275-321 (410)
282 PRK00888 ftsB cell division pr 21.4 2.4E+02 0.0051 18.1 4.4 28 74-101 28-55 (105)
283 PF03825 Nuc_H_symport: Nucleo 21.2 2.1E+02 0.0045 23.0 4.7 24 50-73 160-183 (400)
284 TIGR00806 rfc RFC reduced fola 21.1 5.2E+02 0.011 21.9 7.3 33 21-53 64-96 (511)
285 TIGR03716 R_switched_YkoY inte 21.0 3.5E+02 0.0076 19.9 7.4 26 2-27 8-33 (215)
286 TIGR01478 STEVOR variant surfa 20.9 1.7E+02 0.0036 22.7 3.7 31 37-67 250-280 (295)
287 PRK15021 microcin C ABC transp 20.8 4.2E+02 0.009 21.0 6.1 32 31-62 154-191 (341)
288 KOG4040|consensus 20.6 1.5E+02 0.0033 20.8 3.2 30 47-76 127-156 (186)
289 PF13000 Acatn: Acetyl-coenzym 20.5 4.3E+02 0.0092 22.6 6.2 32 13-44 144-175 (544)
290 KOG4686|consensus 20.5 4.2E+02 0.0092 21.2 5.9 35 11-45 376-410 (459)
291 PF12270 Cyt_c_ox_IV: Cytochro 20.4 2.9E+02 0.0064 18.9 5.6 24 42-66 103-126 (137)
292 PF07721 TPR_4: Tetratricopept 20.3 95 0.0021 14.0 1.6 13 76-88 11-23 (26)
293 PRK11638 lipopolysaccharide bi 20.3 2.3E+02 0.005 22.4 4.6 28 44-71 19-46 (342)
294 KOG1237|consensus 20.3 1.4E+02 0.0031 25.4 3.6 29 16-44 487-515 (571)
295 PTZ00370 STEVOR; Provisional 20.2 1.7E+02 0.0037 22.7 3.7 31 37-67 246-276 (296)
No 1
>KOG0569|consensus
Probab=99.76 E-value=2e-18 Score=138.78 Aligned_cols=99 Identities=28% Similarity=0.359 Sum_probs=88.6
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESPHW 75 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~ 75 (156)
|......++|+.|++|.+.||..+++.+++..+|.+++..++.. ..|++.+.+..+++++.++..+++||||||
T Consensus 131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~ 210 (485)
T KOG0569|consen 131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKY 210 (485)
T ss_pred HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 45567899999999999999999999999999999999877653 479999999999999999999999999999
Q ss_pred HHH-hcChhhHhHHHHHHHHHHHHhhCCCCCCC
Q psy15865 76 LIS-KYLPIGLSALATSAKNMLLFSYGTTLGLP 107 (156)
Q Consensus 76 l~~-~~~~~~a~~~l~~a~~~l~~~~~~~~~~~ 107 (156)
|+. ||+.+| |++.++++|+...+..
T Consensus 211 Ll~~k~~~~~-------A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 211 LLIKKGDEEE-------ARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHcCCHHH-------HHHHHHHHhCCCcchh
Confidence 998 788888 8999999999765444
No 2
>KOG0254|consensus
Probab=99.60 E-value=6.4e-15 Score=120.19 Aligned_cols=96 Identities=28% Similarity=0.416 Sum_probs=88.2
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFIPESPHW 75 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~~~~~~~~~~~~~~~~~~lpESp~~ 75 (156)
+|+...++++|++|++|++.||.+.++.++.+.+|.++++++++.. +||+++.+..+++++..+..+++||||+|
T Consensus 156 ~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~ 235 (513)
T KOG0254|consen 156 VGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRW 235 (513)
T ss_pred hhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 3677789999999999999999999999999999999999888875 79999999999999987778999999999
Q ss_pred HHHhcChhhHhHHHHHHHHHHHHhhCCC
Q psy15865 76 LISKYLPIGLSALATSAKNMLLFSYGTT 103 (156)
Q Consensus 76 l~~~~~~~~a~~~l~~a~~~l~~~~~~~ 103 (156)
+.++|+.++ +++.++++++..
T Consensus 236 L~~~g~~~~-------a~~~l~~l~g~~ 256 (513)
T KOG0254|consen 236 LIEKGRLEE-------AKRSLKRLRGLS 256 (513)
T ss_pred HHHcCChHH-------HHHHHHHHhCCC
Confidence 999999999 889999998844
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.57 E-value=2.1e-17 Score=131.88 Aligned_cols=95 Identities=29% Similarity=0.499 Sum_probs=83.9
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h---hHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L---HWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~---~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+|+..+++++|+.|++|+++||...++.++++.+|.+++.++++. . .||+.++++++++++.++..+++||||
T Consensus 116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 477889999999999999999999999999999999998877653 2 499999999999998888889999999
Q ss_pred HHHHHhcChhhHhHHHHHHHHHHHHhhCC
Q psy15865 74 HWLISKYLPIGLSALATSAKNMLLFSYGT 102 (156)
Q Consensus 74 ~~l~~~~~~~~a~~~l~~a~~~l~~~~~~ 102 (156)
+||..|||++| |++.++++++.
T Consensus 196 ~wL~~~~~~~~-------A~~~l~~~~~~ 217 (451)
T PF00083_consen 196 RWLLSKGRDEE-------AEKVLRKLRGK 217 (451)
T ss_pred ceecccccccc-------ccccccccccc
Confidence 99999999999 67777665554
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.56 E-value=3.6e-14 Score=115.34 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=77.5
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---------------------------hhHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---------------------------LHWRSAAIL 54 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---------------------------~~Wr~~~~~ 54 (156)
|+..+..++|++|++|++.||+..++.++++.+|.+++..++.. ++||+++.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 56778899999999999999999999999999988887665431 269999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHhcChhhHhHHHHHHHHHHHHhhC
Q psy15865 55 NLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYG 101 (156)
Q Consensus 55 ~~~~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~a~~~l~~~~~ 101 (156)
+++|+++.++.++++||||||+..++|.+++ +++.++++++
T Consensus 210 ~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~------a~~~~~~~~~ 250 (502)
T TIGR00887 210 GAVPALLALYFRLTIPETPRYTADVAKDVEQ------AASDMSAVLQ 250 (502)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHhCcchHH------HHHHHHHHhc
Confidence 9999998888889999999999999987542 4445555443
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.51 E-value=1.1e-13 Score=117.03 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=80.9
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----------------hhHHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----------------LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------------~~Wr~~~~~~~~~~~~~~~ 64 (156)
|+..++++++++|++|.+.||...++.++++.+|.++++.+++. .+||+++++.++++++.++
T Consensus 270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll 349 (742)
T TIGR01299 270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG 349 (742)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999888765432 3699999999999988888
Q ss_pred HHhhccCChHHHHHhcChhhHhHHHHHHHHHHHHhhCCC
Q psy15865 65 ALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTT 103 (156)
Q Consensus 65 ~~~~lpESp~~l~~~~~~~~a~~~l~~a~~~l~~~~~~~ 103 (156)
.++++||||+|+..+||.++ +.++++++++.+
T Consensus 350 ~~~~lPESPrwL~~~gr~~e-------A~~iL~~i~~~n 381 (742)
T TIGR01299 350 ALTFMPESPRFFLENGKHDE-------AWMILKLIHDTN 381 (742)
T ss_pred HHHHcCCCHHHHHHCCCHHH-------HHHHHHHHhcCC
Confidence 88999999999999999999 566666665543
No 6
>KOG0253|consensus
Probab=99.41 E-value=1.3e-12 Score=101.70 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHH
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWL 76 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l 76 (156)
+|+ .|+..++-.|..|..+|+..+.+. .+|.+|.++...+++. .+|||..+...+|..++..+.+++||||||+
T Consensus 180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~ 257 (528)
T KOG0253|consen 180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY 257 (528)
T ss_pred CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence 356 888899999999999999988777 9999999998888774 5999999999999888888889999999999
Q ss_pred HHhcChhhHhHHHHHHHHHHH
Q psy15865 77 ISKYLPIGLSALATSAKNMLL 97 (156)
Q Consensus 77 ~~~~~~~~a~~~l~~a~~~l~ 97 (156)
+.+|++++|.+.++++.+.++
T Consensus 258 ~~~G~~~kAletL~kiArmNg 278 (528)
T KOG0253|consen 258 LAKGDDYKALETLHKIARMNG 278 (528)
T ss_pred hhcCChHHHHHHHHHHHHhcC
Confidence 999999998777777776653
No 7
>KOG0255|consensus
Probab=99.37 E-value=1.6e-12 Score=106.05 Aligned_cols=94 Identities=23% Similarity=0.285 Sum_probs=79.2
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-HWRSAAILNLLFPILALCALYFIPESPHWLISKY 80 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~ 80 (156)
++..+++.++++|+.+++.|+...++...++..|.++..+.++.. +||+.+++..+++++.++++++.||||||+..+|
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 567788999999999999999999997777777777777777654 7999999999999988777777779999999999
Q ss_pred ChhhHhHHHHHHHHH
Q psy15865 81 LPIGLSALATSAKNM 95 (156)
Q Consensus 81 ~~~~a~~~l~~a~~~ 95 (156)
+.++|.+.++++.+.
T Consensus 266 ~~~~a~~~l~~~a~~ 280 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKL 280 (521)
T ss_pred chHHHHHHHHHHHhh
Confidence 999966666655544
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=99.34 E-value=9.3e-12 Score=100.91 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=80.2
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-LHWRSAAILNLLFPILALCALYFIPESPHWLISKY 80 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~ 80 (156)
|+..++...++.|+.|+++|++..++.++++.+|.++++++++. .+||+.+++.+++.++.++..+++||||+|+..++
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~ 274 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG 274 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC
Confidence 45578889999999999999999999999999999999888765 47999999999998887777788999999999999
Q ss_pred ChhhHhHHHHHHHH
Q psy15865 81 LPIGLSALATSAKN 94 (156)
Q Consensus 81 ~~~~a~~~l~~a~~ 94 (156)
+.+++.+.+++..+
T Consensus 275 ~~~~a~~~l~~~~~ 288 (505)
T TIGR00898 275 RIEEALKILQRIAK 288 (505)
T ss_pred CHHHHHHHHHHHHH
Confidence 99996655555443
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.27 E-value=3.6e-11 Score=96.69 Aligned_cols=84 Identities=30% Similarity=0.489 Sum_probs=72.7
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+..+..+.+++|++|++.||+..++.+.+..+|.+++++++. ..+||++|++.+++.++.++..+++
T Consensus 135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l 214 (479)
T PRK10077 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV 214 (479)
T ss_pred hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC
Confidence 5567788999999999999999999999999999998876643 2489999999998888777777889
Q ss_pred cCChHHHHHhcChhhH
Q psy15865 70 PESPHWLISKYLPIGL 85 (156)
Q Consensus 70 pESp~~l~~~~~~~~a 85 (156)
||||+|+..+++.+++
T Consensus 215 ~~s~~~l~~~~~~~~~ 230 (479)
T PRK10077 215 PETPRYLMSRGKQEQA 230 (479)
T ss_pred CCCcHHHHHcCCHHHH
Confidence 9999999988888874
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.02 E-value=1.3e-09 Score=88.53 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=64.7
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+.++....+++|++|+++||+..++.+.+..+|.+++..+.. .++||++|++..+++++.++++.++
T Consensus 133 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~ 212 (490)
T PRK10642 133 GGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHAL 212 (490)
T ss_pred HhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 6778899999999999999999999999888888877664321 2589999999888777767777789
Q ss_pred cCChHHHHHhc
Q psy15865 70 PESPHWLISKY 80 (156)
Q Consensus 70 pESp~~l~~~~ 80 (156)
||||+|...++
T Consensus 213 ~esp~~~~~~~ 223 (490)
T PRK10642 213 EETPAFQQHVD 223 (490)
T ss_pred CCChhHHHHHH
Confidence 99999976543
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.01 E-value=7.6e-10 Score=89.91 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=66.5
Q ss_pred hhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh-
Q psy15865 6 VLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLISK- 79 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~- 79 (156)
.....++.|.+|++.||...++ .+++...|.+..+++++. .+|+.++++..+++++.++..+++||||+|+.++
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 4556778999999999987775 666665555444444432 2588888888888888777777889999999865
Q ss_pred ----cChhhHhHHHHHHHHHHHHhh
Q psy15865 80 ----YLPIGLSALATSAKNMLLFSY 100 (156)
Q Consensus 80 ----~~~~~a~~~l~~a~~~l~~~~ 100 (156)
||.+| |++++++++
T Consensus 441 ~~~~~~~~~-------a~~~l~~~~ 458 (490)
T PRK10642 441 TPAASDIQE-------AKEILVEHY 458 (490)
T ss_pred cccccchhh-------HHHHhhccc
Confidence 89899 778887776
No 12
>PRK09952 shikimate transporter; Provisional
Probab=98.94 E-value=4.1e-09 Score=84.53 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=65.8
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+.++.+..++.|+.|+++||...+..+.++.+|.+++..+.. .++||++|++..++.++.+..+..+
T Consensus 140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~ 219 (438)
T PRK09952 140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGM 219 (438)
T ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhC
Confidence 5677888899999999999999999999999999988754432 3589999999998877766667789
Q ss_pred cCChHHHHHhc
Q psy15865 70 PESPHWLISKY 80 (156)
Q Consensus 70 pESp~~l~~~~ 80 (156)
||||+|...++
T Consensus 220 ~es~~~~~~~~ 230 (438)
T PRK09952 220 EESAEFEQQQH 230 (438)
T ss_pred CCChhHHHHHh
Confidence 99999876653
No 13
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.89 E-value=1.7e-08 Score=80.00 Aligned_cols=82 Identities=33% Similarity=0.524 Sum_probs=70.4
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh---h----hhhHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG---S----FLHWRSAAILNLLFPILALCALYFIPESPHW 75 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~---~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~ 75 (156)
...+....++.|++|+++|++..++.+.+..+|.++++.++ . ..+||+.|++..+..++.++..+++||+|++
T Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~ 222 (481)
T TIGR00879 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW 222 (481)
T ss_pred HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 44567788999999999999999999999999999999888 3 3589999999888777777777889999999
Q ss_pred HHHhcChhh
Q psy15865 76 LISKYLPIG 84 (156)
Q Consensus 76 l~~~~~~~~ 84 (156)
+..+++.++
T Consensus 223 ~~~~~~~~~ 231 (481)
T TIGR00879 223 LVGKGRVEE 231 (481)
T ss_pred HHHcCChHH
Confidence 888777766
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.77 E-value=6.7e-08 Score=77.26 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=63.7
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+..++...+++|+.|+++||+..++.+.+...|.+++.++.. .++||++|++.++++++.++.+..+
T Consensus 139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~ 218 (432)
T PRK10406 139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQL 218 (432)
T ss_pred hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcC
Confidence 6778899999999999999999999888888888877765432 3589999999999988877777789
Q ss_pred cCChHHHH
Q psy15865 70 PESPHWLI 77 (156)
Q Consensus 70 pESp~~l~ 77 (156)
||+|++..
T Consensus 219 ~e~~~~~~ 226 (432)
T PRK10406 219 DETSQQET 226 (432)
T ss_pred CCCchHHH
Confidence 99998743
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.58 E-value=1.2e-07 Score=75.55 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=59.6
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhcc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIP 70 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lp 70 (156)
|+..+....++.|++|+++|++..++++.+..+|..+++.++.. .+||+.|.+.++++++. ++.++++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 111 AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 34556777889999999999999999999999999888777542 38999999998887654 44566789
Q ss_pred CChH
Q psy15865 71 ESPH 74 (156)
Q Consensus 71 ESp~ 74 (156)
|+|+
T Consensus 191 ~~p~ 194 (412)
T TIGR02332 191 DSPD 194 (412)
T ss_pred CCcc
Confidence 9994
No 16
>KOG0252|consensus
Probab=98.49 E-value=5.5e-08 Score=77.82 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------------------hhHHHHHHHHHHHHHH
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------------------LHWRSAAILNLLFPIL 61 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------------------~~Wr~~~~~~~~~~~~ 61 (156)
|||++|.+.+..+|.+..+.||...+.+.....+|++.+.+++.. .-||+.+.+..+|+++
T Consensus 158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~ 237 (538)
T KOG0252|consen 158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL 237 (538)
T ss_pred ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999988777777777776655442 2699999999999999
Q ss_pred HHHHHhhccCChHHHHHhcCh
Q psy15865 62 ALCALYFIPESPHWLISKYLP 82 (156)
Q Consensus 62 ~~~~~~~lpESp~~l~~~~~~ 82 (156)
.+..++.||||++|-....++
T Consensus 238 ~ly~Rl~M~Et~~Y~al~~~~ 258 (538)
T KOG0252|consen 238 VLYFRLKMPETARYTALVSKK 258 (538)
T ss_pred HHHhhhcCCcchhHHHHhhcC
Confidence 999999999999997554433
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.48 E-value=1.6e-06 Score=67.75 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=63.1
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh--HHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH--WRSAAILNLLFPILALCALYFIPESPHW 75 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~--Wr~~~~~~~~~~~~~~~~~~~lpESp~~ 75 (156)
|+..+....++.|+.|+++|++..++.+.+..+|.+++..++.. .+ ||+.+.+.+++.++.++....+||++++
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 194 (405)
T TIGR00891 115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW 194 (405)
T ss_pred hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 34566778899999999999999999999999998888776553 23 9999999888877777777788999887
Q ss_pred HHHh
Q psy15865 76 LISK 79 (156)
Q Consensus 76 l~~~ 79 (156)
...+
T Consensus 195 ~~~~ 198 (405)
T TIGR00891 195 KEKH 198 (405)
T ss_pred HHHh
Confidence 6443
No 18
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.46 E-value=6e-07 Score=70.74 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=57.8
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPHWL 76 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l 76 (156)
......++|+.|+++|++..++.+.+..+|.++++.++.. .+||+.|++.++++++. ++.++++||+|++.
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~ 172 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA 172 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3445667999999999999999999999999998877665 49999999977776554 55567899999863
No 19
>PRK15075 citrate-proton symporter; Provisional
Probab=98.31 E-value=4.9e-06 Score=66.62 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=55.4
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+..+....+++|+.|+++|++..++.+.+..+|..++..++. ..+||++|++..+..++.++....+
T Consensus 132 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~ 211 (434)
T PRK15075 132 GVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSL 211 (434)
T ss_pred cccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777899999999999999999877666665555443332 2589999998776655555555668
Q ss_pred cCChHHHHH
Q psy15865 70 PESPHWLIS 78 (156)
Q Consensus 70 pESp~~l~~ 78 (156)
||++.+...
T Consensus 212 ~e~~~~~~~ 220 (434)
T PRK15075 212 EETEEFLAR 220 (434)
T ss_pred CCCHHHHHh
Confidence 898766543
No 20
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.25 E-value=6e-06 Score=64.02 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=62.4
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|...+....++.|+.++++|++..+..+.+..+|.+++..++. .++||+.+++..++.++.++....+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 190 (394)
T TIGR00883 111 GGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNL 190 (394)
T ss_pred cccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677889999999999999999999999999888876542 2489999999888877766666778
Q ss_pred cCChHHHHHh
Q psy15865 70 PESPHWLISK 79 (156)
Q Consensus 70 pESp~~l~~~ 79 (156)
||+|++...+
T Consensus 191 ~~~~~~~~~~ 200 (394)
T TIGR00883 191 EETPVFEKAQ 200 (394)
T ss_pred CCChhHHHHH
Confidence 9998775543
No 21
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.23 E-value=7.1e-06 Score=65.10 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=61.0
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLI 77 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~ 77 (156)
|+..+....++.|+.|++.|++..++.+.++.+|.++++.+... .+||+.+++..++.++.++.....||++++..
T Consensus 121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~ 200 (426)
T PRK12307 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEE 200 (426)
T ss_pred hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHH
Confidence 34567788899999999999999999999999999888766542 58999999877666555555556799987754
Q ss_pred H
Q psy15865 78 S 78 (156)
Q Consensus 78 ~ 78 (156)
.
T Consensus 201 ~ 201 (426)
T PRK12307 201 A 201 (426)
T ss_pred h
Confidence 3
No 22
>TIGR00895 2A0115 benzoate transport.
Probab=98.17 E-value=9.2e-06 Score=63.14 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=62.3
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH-HHHHHHHHhhccCChHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLF-PILALCALYFIPESPHWL 76 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~-~~~~~~~~~~lpESp~~l 76 (156)
|...+....++.|+.|.+.|++..++.+.+..+|..+++.++.. .+||..+.+.++. .+..++..+++||+|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199 (398)
T ss_pred ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHH
Confidence 45567888999999999999999999999999988888777643 4899999988654 444455667789999887
Q ss_pred HHh
Q psy15865 77 ISK 79 (156)
Q Consensus 77 ~~~ 79 (156)
..+
T Consensus 200 ~~~ 202 (398)
T TIGR00895 200 VSK 202 (398)
T ss_pred Hhc
Confidence 665
No 23
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.16 E-value=2.5e-05 Score=61.54 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=59.9
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPHWLIS 78 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l~~ 78 (156)
..+....++.|+.|+++|++..++.+.+..+|.++++.++.. .+||+.+++.++..++. .+..+++||+|++...
T Consensus 120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 199 (406)
T PRK11551 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQA 199 (406)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence 456677899999999999999999999999998888877643 58999999887765544 3445678999987654
Q ss_pred h
Q psy15865 79 K 79 (156)
Q Consensus 79 ~ 79 (156)
+
T Consensus 200 ~ 200 (406)
T PRK11551 200 A 200 (406)
T ss_pred c
Confidence 3
No 24
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.06 E-value=2.7e-05 Score=62.41 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=59.1
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCChHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPESPHWL 76 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l 76 (156)
|...+....++.|+.|+++|++..++.+.+..+|.++++.+.. ..+||+.|.+.++++++. ++..++++|+|.+.
T Consensus 126 g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~ 205 (434)
T PRK11663 126 GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM 205 (434)
T ss_pred HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc
Confidence 3445677889999999999999999999888888888776544 358999999988876654 44556789998754
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.05 E-value=3.9e-05 Score=62.10 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=61.3
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLIS 78 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~ 78 (156)
+..+....++.|..|++.|++..++...++.+|.++++.++.. .+||+.|++..++.++.++....+||++++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~ 203 (496)
T PRK03893 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEK 203 (496)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhh
Confidence 3456677889999999999999999988888888888776553 589999998777766666666778999887544
Q ss_pred h
Q psy15865 79 K 79 (156)
Q Consensus 79 ~ 79 (156)
+
T Consensus 204 ~ 204 (496)
T PRK03893 204 H 204 (496)
T ss_pred c
Confidence 3
No 26
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.92 E-value=4.7e-05 Score=60.48 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=57.2
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHHH-HHhhcc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQ----LFLGSFLHWRSAAILNLLFPILALC-ALYFIP 70 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~----~~~~~~~~Wr~~~~~~~~~~~~~~~-~~~~lp 70 (156)
|+.+++...+.+++.|+++|++..++...+.++..+++ .+++.++|||..|++.+..+++.++ .+..+|
T Consensus 116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56678889999999999999999999888888866665 5556678999999999999887655 456688
No 27
>KOG2533|consensus
Probab=97.87 E-value=1.6e-05 Score=65.14 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=60.9
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhcc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIP 70 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lp 70 (156)
++.+|..-.+++-+..+++||...+++.....+|.+++.++++. .+|||+|++.++..++. ++.++++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 46678888999999999999999999997777777777766554 38999999999887766 55667899
Q ss_pred CChH
Q psy15865 71 ESPH 74 (156)
Q Consensus 71 ESp~ 74 (156)
+.|.
T Consensus 229 ~~P~ 232 (495)
T KOG2533|consen 229 DNPS 232 (495)
T ss_pred CChh
Confidence 9997
No 28
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.87 E-value=0.00013 Score=58.28 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=54.0
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCA-LYFIPESPH 74 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~ 74 (156)
.+..+.++.|..|.+.|++..++......+|..+++.++. ..+||+.|++.++.+++.++. .+++||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3455678899999999999888887777777777776665 358999999998887766544 556899864
No 29
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.87 E-value=3e-05 Score=62.48 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=58.6
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----h-hhHHHHHHHHHHHHHHHHHHH-hhccCChH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----F-LHWRSAAILNLLFPILALCAL-YFIPESPH 74 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~-~~Wr~~~~~~~~~~~~~~~~~-~~lpESp~ 74 (156)
|+..+....++.|+.|+++|++..++...+..+|.++++.++. . .+||+.|++.++++++..+.+ ++.+|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 4567788899999999999999999999888888888776654 2 389999999998877665444 45678875
No 30
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.86 E-value=7e-05 Score=61.22 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=56.4
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
+....++.|++|+++|++..++.+.++.+|.+++..++. ..+||..|++.++..++.++..+++||+++
T Consensus 126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 455678899999999999999999999999888875543 248999999998887777666667899864
No 31
>PRK03545 putative arabinose transporter; Provisional
Probab=97.86 E-value=5.9e-05 Score=59.37 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=55.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESP 73 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp 73 (156)
.+....++.|+.|+++|++..++.+.+..+|.++++.++. ..+||+.|++.++++++..+ .++++||.|
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4566788999999999999999999988888888776654 35999999999888766543 445578765
No 32
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.86 E-value=4.8e-05 Score=58.71 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=57.3
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~ 74 (156)
...+....++.|+.|+++|++..++.+....+|.++++.++.. .+||+.+.+.++.+++..+ ..+++||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 98 PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 4456778899999999999999999999999999888777654 4899999998887666544 3445677653
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.81 E-value=0.00011 Score=58.18 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=56.0
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~ 74 (156)
...+....++.|+.|+++|++..++......+|.++++.++.. .+||+.|++.++.+++.++ ....+||+|+
T Consensus 124 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 124 GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 3457788899999999999999999888888888777776653 5999999998877665443 3345788763
No 34
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.79 E-value=0.00016 Score=57.94 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=55.2
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILA-LCALYFIPESPHW 75 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~ 75 (156)
..+....++.|+.|+++||+..++.+.+..+|..+++.+.. ..+||..|++.++++++. ++..+++||+|+.
T Consensus 135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 212 (438)
T TIGR00712 135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQS 212 (438)
T ss_pred chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 44556778899999999999999998888887776654322 358999999988887664 4556678998864
No 35
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.77 E-value=0.00016 Score=47.67 Aligned_cols=69 Identities=25% Similarity=0.430 Sum_probs=52.9
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCC
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPES 72 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpES 72 (156)
..+....++.|..|.+.|++..++.+....+|..+++.+... .+|++.+.+..+..++..+ ..++.||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 345667788999999999999999988888888887776554 4899999888877666544 34455664
No 36
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.74 E-value=0.00015 Score=56.19 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=54.2
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh--------HHHHHHHHHHHHHHHHHHHh-hccCC
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH--------WRSAAILNLLFPILALCALY-FIPES 72 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~--------Wr~~~~~~~~~~~~~~~~~~-~lpES 72 (156)
+....++.|++|+++|++..++.+.++.+|.+++..++.. .+ ||.+|++.++..++..+..+ ..||+
T Consensus 102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4456678999999999999999999999999988777643 45 99999999988777655544 46775
Q ss_pred h
Q psy15865 73 P 73 (156)
Q Consensus 73 p 73 (156)
.
T Consensus 182 ~ 182 (356)
T TIGR00901 182 Q 182 (356)
T ss_pred C
Confidence 4
No 37
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.73 E-value=0.00039 Score=55.07 Aligned_cols=72 Identities=21% Similarity=0.081 Sum_probs=55.0
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
...|....++.|+.|+++|+++.++.+....+|.++++.++... .|+..+.+.+...++..+..+++||+|.
T Consensus 104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 178 (393)
T PRK11195 104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 45677888999999999999999999999888888888887642 4666666555554444555567899874
No 38
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.73 E-value=0.00019 Score=56.84 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=55.6
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
+....++.|+.|+++|++..++...++.+|.+++..++.. .+||..|++.++..++..+..+++||+++
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4556788999999999999999999989988887765432 48999999988877766666677888764
No 39
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.71 E-value=0.00016 Score=62.09 Aligned_cols=71 Identities=7% Similarity=-0.051 Sum_probs=56.8
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+..++..+|++|+.|.+.|++..++......+|.++++.++.. .....+|++.++..++..++..++||+.
T Consensus 664 ~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 664 AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3456778899999999999999999999999999999988653 2446677777777676666666789974
No 40
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.68 E-value=0.00015 Score=61.16 Aligned_cols=71 Identities=17% Similarity=0.402 Sum_probs=56.0
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------------------------h-hHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------------------------L-HWRSAAILN 55 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------------------------~-~Wr~~~~~~ 55 (156)
|..++....|+.|+.|++.|+.+.++.+....+|.+++++++.. . +|+..|++.
T Consensus 187 ~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~ 266 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLIC 266 (633)
T ss_pred CcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999888777542 1 388889888
Q ss_pred HHHHHHHHHHHhhccCC
Q psy15865 56 LLFPILALCALYFIPES 72 (156)
Q Consensus 56 ~~~~~~~~~~~~~lpES 72 (156)
+++.++..+.++++|+.
T Consensus 267 g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 267 GGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 88877765555566654
No 41
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.67 E-value=0.00025 Score=55.10 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH-HHHhhccCChH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILAL-CALYFIPESPH 74 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~-~~~~~lpESp~ 74 (156)
..+....++.|+.|+++|++..++.+....+|..+++.++.. .+||+.+++.++..++.. +..+++||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 110 GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 456677899999999999999999988888888877766553 589999998887766553 34456788754
No 42
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.67 E-value=7.8e-05 Score=59.99 Aligned_cols=72 Identities=22% Similarity=0.418 Sum_probs=56.6
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~ 74 (156)
...+....++.|+.|+++|++..++..++..+|..+++.++.. .+||+.|++...++++.++ ..+++||.++
T Consensus 106 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 106 PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 3456778899999999999999999999999888888777654 5899999998887665543 4455777543
No 43
>PTZ00207 hypothetical protein; Provisional
Probab=97.66 E-value=0.00033 Score=58.67 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=58.7
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-HHHhhhh--hhHHHHHHHHHHHHHHH-HHHHh--hccCChHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS-QLFLGSF--LHWRSAAILNLLFPILA-LCALY--FIPESPHWLIS 78 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l-~~~~~~~--~~Wr~~~~~~~~~~~~~-~~~~~--~lpESp~~l~~ 78 (156)
.+.+...+.+++| ++||+..++...+..+|..+ +.+...+ .+|+..|++.++.+++. ++..+ ..|++|+|...
T Consensus 138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~ 216 (591)
T PTZ00207 138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQ 216 (591)
T ss_pred HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccc
Confidence 3456667889986 78999999999999999975 3333333 37777777776665544 33333 35888888877
Q ss_pred hcChhhHhHHHHH
Q psy15865 79 KYLPIGLSALATS 91 (156)
Q Consensus 79 ~~~~~~a~~~l~~ 91 (156)
+++.+++++.+++
T Consensus 217 ~~~~~~~~~~~~~ 229 (591)
T PTZ00207 217 EKHLDEEEKAQRL 229 (591)
T ss_pred ccCCCHHHHHHHh
Confidence 7777775544333
No 44
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.63 E-value=9.6e-05 Score=56.52 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=56.4
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~ 74 (156)
...+....++.|+.|+++|++..++.+....+|.++++.++.. .+||+.+++.++..++..++ .+++++.|.
T Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 101 FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence 3456778899999999999999999999999999998887664 48999999999988877553 345555543
No 45
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.56 E-value=0.00031 Score=55.27 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=52.7
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESP 73 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp 73 (156)
.+....++.|+.++++|++..++...+..+|..+++.++. ..+||+.|.+.++.+++.++ .++++||.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 109 FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4566778899999999999998888888787777665543 35899999999887665543 455688865
No 46
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.55 E-value=0.00036 Score=56.99 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=51.3
Q ss_pred hhHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 6 VLVLTYVAEI-TQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~-~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
+.....+.+. .|+++|++..++....+.+|..+++.++.. .+||+.|++....+++. ++..+++||.|.
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3344455555 478999999999999998888888887664 59999999987766554 445566888763
No 47
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.55 E-value=0.00037 Score=54.24 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=54.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
.+....++.|+.|+++|++..++.+....+|..+++.++.. .+||+.+.+.++.+++. ++..+++||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 97 SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 45567789999999999999999988888888888777553 58999999888776665 44456788875
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.55 E-value=0.0004 Score=53.29 Aligned_cols=63 Identities=5% Similarity=-0.066 Sum_probs=50.6
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..+....++.|+.|+++|++..++.+....+|.++++.++.. .+||+.+++..+..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999988888777653 589999998887766554433
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.51 E-value=0.00066 Score=54.68 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=53.2
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHH-HHHHHhh----hhhhHHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLFLG----SFLHWRSAAILNLLFPILA-LCALYFIPESPHW 75 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~-~l~~~~~----~~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~ 75 (156)
..+.....+.|++|++.|++..++.+.+..+|. +.+++++ ...+||+.|++.++++++. ++..+++||+|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 137 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 345556778899999999999999888888775 3444332 2348999999988776654 5556778999865
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.38 E-value=0.001 Score=52.33 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=54.1
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
..+....++.|..|+++|++..++.+....+|.++++.++.. .+||+.+++.++.+++. ++..+++||++
T Consensus 108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677889999999999999999888888877777766543 48999999988776654 44456678875
No 51
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.35 E-value=0.00067 Score=52.59 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=47.9
Q ss_pred cchhHHHHHHhhcCcchhHHH--HHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCChHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGML--SATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESPHW 75 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~--~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~~ 75 (156)
..+....++.|+.|++.|+.. .+....+..+|..+++.++. ..+||+.|++.+++.++..+ ..+++||+|+.
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 345556677888887777643 35555555566666655543 45899999999888666544 44568998864
No 52
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.33 E-value=0.00068 Score=53.82 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=54.2
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
+....++.|+.|+++|++..++.+....+|..+++.++.. .+|++.+++.++..++..+..+.+||+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPP 201 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3445677899999999999999888888888888777653 48999999888877776666677888754
No 53
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.30 E-value=0.00019 Score=55.34 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=56.1
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHH-Hhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-FLGS----FLHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~-~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
|...+....++.|+.|+++|++..++.+.+..+|.++++ +++. ..+||+.+++.++..++. ++..++++|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 445677888999999999999999988888888888877 3433 358999999888776554 445566788764
No 54
>KOG2532|consensus
Probab=97.28 E-value=0.00044 Score=56.36 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=58.8
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH-hhccCChH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCAL-YFIPESPH 74 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~-~~lpESp~ 74 (156)
|..++....+.+.|+|+++|++..++...+..+|.+++..++.. .||+.+|++.++.+++..+++ ++.-|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 45677788888999999999999999888888888887655442 699999999999988876655 44577775
No 55
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.27 E-value=0.0012 Score=53.82 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----HHhhh---------hhhHHHHHHHHHHHHHHHHHHHhhc-cCCh
Q psy15865 8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQ----LFLGS---------FLHWRSAAILNLLFPILALCALYFI-PESP 73 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~----~~~~~---------~~~Wr~~~~~~~~~~~~~~~~~~~l-pESp 73 (156)
...+++|+.|++.||+..++...+..+|..++ +.+.. ..+||+.|++.++++++..+..+++ ++.|
T Consensus 144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p 223 (476)
T PLN00028 144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP 223 (476)
T ss_pred HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 44578999999999999998765544444443 33321 1489999999988877655444443 4444
No 56
>KOG2615|consensus
Probab=97.26 E-value=0.00029 Score=55.81 Aligned_cols=70 Identities=13% Similarity=0.293 Sum_probs=52.5
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHH-HHHHHhhccC
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH----------WRSAAILNLLFPIL-ALCALYFIPE 71 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~----------Wr~~~~~~~~~~~~-~~~~~~~lpE 71 (156)
++..+.-+|++|+.+.++|+..++.+...+.+|.++++.++.++. .-.+-++..+++.. .+.+.+|+||
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE 215 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE 215 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 466788899999999999999999999999999988888877532 22223333444444 4556789999
Q ss_pred C
Q psy15865 72 S 72 (156)
Q Consensus 72 S 72 (156)
|
T Consensus 216 T 216 (451)
T KOG2615|consen 216 T 216 (451)
T ss_pred c
Confidence 9
No 57
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.26 E-value=0.0016 Score=49.39 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=54.4
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
|...+....++.|+.|+++|++..++.+....+|..+++.++.. .+||+.+.+.+++.++..+..++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999888877664 3799999988887666544443333
No 58
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.26 E-value=0.0024 Score=50.45 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=50.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESPH 74 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~ 74 (156)
.++...++.|..|++.|++..++......+|..+++.++. ..+||+.+++.++.+++.++ ..+++||+++
T Consensus 119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4567788899999999988777766665566666655543 35899999988877666544 4456788864
No 59
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.24 E-value=0.0013 Score=50.91 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=46.2
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----h----------hhhHHHHH-HHHHHH-HHHHHHHHh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----S----------FLHWRSAA-ILNLLF-PILALCALY 67 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~----------~~~Wr~~~-~~~~~~-~~~~~~~~~ 67 (156)
..+....+++|+.|+++|+...++...+..+|..++..++ . ..+||+.+ +...+. .++.++...
T Consensus 107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 186 (366)
T TIGR00886 107 SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF 186 (366)
T ss_pred hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999988755555555544333 2 12799998 443433 334444455
Q ss_pred hccCChH
Q psy15865 68 FIPESPH 74 (156)
Q Consensus 68 ~lpESp~ 74 (156)
+.+|+|+
T Consensus 187 ~~~~~~~ 193 (366)
T TIGR00886 187 VGADTPP 193 (366)
T ss_pred hcccCCc
Confidence 6677764
No 60
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.00023 Score=56.87 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=58.6
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh--h-h---hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG--S-F---LHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~--~-~---~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
...|.+.-.+..++++++||+..++++.+..+|..+.+.+. . . .+||..|++.++.++++ ++.++.+.++|+
T Consensus 133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34567778899999999999999999999999887766554 2 2 38999999999998776 555667888886
No 61
>KOG1330|consensus
Probab=97.22 E-value=2.7e-05 Score=62.69 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=59.3
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
...++++.+++|.+|...|++..+++++...+|..++++++.. ..|||.|.+.++.+++. ++.+++++|..|
T Consensus 137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 4567889999999999999999999999999998888777654 24999999999998876 445566777654
No 62
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.21 E-value=0.0016 Score=52.11 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=52.0
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lpES 72 (156)
.+....++.|..|++.||+..++.+ ..+.+|.++++.++.. .+|+..|.+.++..++. .+..++++|+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3556778999999999999999986 5677888887777653 25999998888776654 4455667887
No 63
>PRK12382 putative transporter; Provisional
Probab=97.19 E-value=0.0012 Score=51.80 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=49.5
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+....++.|..|+++|++..++.+.+..+|.++++.++. ..+||..+.+..+..++.++....+||.+
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 445567889999999999999988888877777766654 35899988777666555544444556653
No 64
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.14 E-value=0.0014 Score=58.60 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=57.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
..++...++.++.+.+.|+.+.++.+++..+|.++++.++.. .+|++.|++..+..++.++..+++|+++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 457788899999999999999999999999999998888765 4899998666666666666667777764
No 65
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.11 E-value=0.0015 Score=51.36 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=50.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
..+....++.|..|.++|++..++.+....+|.++++.++. ..+||..+++..+.+++.++.....|+++
T Consensus 129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (399)
T PRK05122 129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP 202 (399)
T ss_pred hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34555677889999999999998887777777666665543 45899998888777665555444456543
No 66
>PRK10504 putative transporter; Provisional
Probab=97.10 E-value=0.0023 Score=51.60 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=53.5
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESP 73 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp 73 (156)
+..+....++.|..|+++|+...++......+|..+++.++.. .+||+.|.+....+++..+. ....|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 114 MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3456778889999999999999999888888888887776543 58999999988776655443 34456543
No 67
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.08 E-value=0.0034 Score=50.52 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=49.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----------FLHWRSAAILNLLFPILALC-ALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----------~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp 73 (156)
++.+++++|..|++.|+...++......+|.+++..+.. ..+|+..+++.++.+++..+ ..+++||+.
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 567789999999999999999988887777776643322 24677777777766555433 445678864
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.04 E-value=0.0036 Score=49.68 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=51.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILAL-CALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~lpES 72 (156)
.+....++.|..|+++|++..++......+|..+++.++.. .+||+.|++.++..++.. +..+++||.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 35566788999999999999999888888887777766543 599999998887765543 334556763
No 69
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.03 E-value=0.00047 Score=55.78 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=54.2
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
...+....+++|++|+++||+..++.+.+..+|.+++..+... .+||..|.+.++++++. ++.+++++++|.
T Consensus 138 ~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 138 TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 4456777899999999999999999988888888887665431 15899888877776654 334455677764
No 70
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.01 E-value=0.0054 Score=48.17 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=52.8
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp 73 (156)
..+....++.+..|++.|++..++......+|.++++.++.. .+||+.+++..+..++..+ ..++++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 345556688899999999999999888888888887766553 5899999988887665433 445567754
No 71
>TIGR00898 2A0119 cation transport protein.
Probab=96.99 E-value=0.0018 Score=52.71 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=54.7
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF--LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~--~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
.+++.+++.+|..|.+.|+...++.+....+|.++++.+... .++..++.+.++.+++..+..+++||+.
T Consensus 427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 356677889999999999999999998889999998877652 2456677777777666666667889874
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.97 E-value=0.0039 Score=49.25 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=51.1
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
+..+.+..|..|. .||...++.+....+|..+++.++.. .+|+.++.+..++.++.++..+++||+
T Consensus 324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455678899986 48888888777777888777766654 589999999988888887777777763
No 73
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.96 E-value=0.0043 Score=48.75 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=51.6
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~ 74 (156)
+....++.|..+.+.|+...+..+++..+|.++++.++.. .+||+.+.+..+.+++. ++..+++||++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 4455677888888999998888888888877777666543 58999999988776554 444567899764
No 74
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.93 E-value=0.0034 Score=52.66 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=40.9
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHH----HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHhhccCC
Q psy15865 8 VLTYVAEITQPHLRGMLSATASMTTIF----GTVSQLFLGSFLHWRSAAILNLLFPILALC--ALYFIPES 72 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~----G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~--~~~~lpES 72 (156)
....++|..|.+.|+....+......+ |.+++..+....+|||.+++..+...+.++ ++|+-|.+
T Consensus 151 ~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 151 AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 445689999999998877665544433 333333333335899999999887555433 33444543
No 75
>PRK03699 putative transporter; Provisional
Probab=96.89 E-value=0.006 Score=48.17 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=46.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..+....++.|+.|.+.|+...+.....+.+|..+++.+.. ..+||+.|.+.+++.++.++..
T Consensus 112 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 112 TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 44566778899999999999888877777777666654432 3589999998888766654443
No 76
>PRK11043 putative transporter; Provisional
Probab=96.86 E-value=0.0061 Score=48.05 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=47.6
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+....++.|..+++.++...+.......+|..+++.++. ..+||+.+++..++.++..+..++++|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344567889999988887777666656666656555543 35999999998888777665555666654
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.84 E-value=0.0036 Score=55.82 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=52.3
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------------hHHHHHHHHHHH-HHHHHHHHhh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------HWRSAAILNLLF-PILALCALYF 68 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------------~Wr~~~~~~~~~-~~~~~~~~~~ 68 (156)
...++...++.|++|.+.|+++.++.+.+..+|.++++.++..+ .|++.+.+..+. .++.+++.++
T Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1146)
T PRK08633 119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYR 198 (1146)
T ss_pred hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhc
Confidence 34567778999999999999999999999988888887776532 244444444333 4444555667
Q ss_pred ccCChHH
Q psy15865 69 IPESPHW 75 (156)
Q Consensus 69 lpESp~~ 75 (156)
+||+|.+
T Consensus 199 ~~~~~~~ 205 (1146)
T PRK08633 199 LPKVPAA 205 (1146)
T ss_pred CcCCCCC
Confidence 8998765
No 78
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.74 E-value=0.011 Score=48.49 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=54.6
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH---HHHHHHHHHhhccCChHHHHHh
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLL---FPILALCALYFIPESPHWLISK 79 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~---~~~~~~~~~~~lpESp~~l~~~ 79 (156)
....|+..+.|+++|+++.+++..+..+|.+++..++.. ++||..+.+..+ ...+.++.-+++|-.++-+.-+
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 677899999999999999999999999999998877654 478776665543 3334455667888555544443
No 79
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.71 E-value=0.0069 Score=49.69 Aligned_cols=56 Identities=11% Similarity=-0.058 Sum_probs=40.7
Q ss_pred CccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLL 57 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~ 57 (156)
|...+....+++|..|++. |+...+++.++..+|.++++.++. ..+||+.|++..+
T Consensus 120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3456778899999998874 466666677777777766665544 4699999998754
No 80
>PRK10054 putative transporter; Provisional
Probab=96.70 E-value=0.0055 Score=48.57 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=51.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHH-HHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALC-ALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~-~~~~lpES 72 (156)
.++...++.|..|++.|++..++......+|..+++.++.. .+||..|.+.++..++.++ ..+++||.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788999999999999888888888888887776654 4899999988877666533 34456655
No 81
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.67 E-value=0.0093 Score=46.91 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=48.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
.+.....+.|..|++.||+..++......+|..+++.+... .+|+..+.+.++..++.++..+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445667899999999999999888888877665544332 48999999888877776555544433
No 82
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.67 E-value=0.0078 Score=45.64 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=56.0
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
+...+....++.|..|+++|++..++.+....+|..+++.+... .+|+..+.+.++..++..+..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 34567788899999999999999999999999999888877654 489999999998888776655443
No 83
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.67 E-value=0.0094 Score=47.67 Aligned_cols=68 Identities=7% Similarity=0.011 Sum_probs=49.5
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------------------------------hhHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------------------------------LHWRSAAIL 54 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------------------------------~~Wr~~~~~ 54 (156)
.+....++.+..|++.|++..++.+.+..+|..+++.++.. .+||+++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~ 191 (410)
T TIGR00885 112 ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMI 191 (410)
T ss_pred HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999998888888888887766432 259999988
Q ss_pred HHHHHHHHHHHH--hhccCC
Q psy15865 55 NLLFPILALCAL--YFIPES 72 (156)
Q Consensus 55 ~~~~~~~~~~~~--~~lpES 72 (156)
.+++.++..+.. ..+||.
T Consensus 192 ~a~~~~~~~~~~~~~~~p~~ 211 (410)
T TIGR00885 192 IGAVVLAVALLIMLTKMPAL 211 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 887766544333 236663
No 84
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.60 E-value=0.0099 Score=46.94 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=44.5
Q ss_pred hhHHHHHHhhcCcchh--HHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHH-HHHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILAL-CALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~R--g~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~-~~~~~lpESp 73 (156)
+....++.++.+++.| +...+..+.+..+|.++++.++. ..+||..|++.++.+++.. +...++||+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 3445566776666555 34446666666677777666654 4599999999888766553 3455678875
No 85
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.59 E-value=0.008 Score=48.62 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=45.4
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
+....++.++.+ +.|++..++.+.+..+|..+++.++. ..+||+.|++.++..++.++..
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~ 190 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG 190 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 445567788886 78999999999888888777765543 3589999999988776554433
No 86
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.55 E-value=0.0089 Score=48.37 Aligned_cols=62 Identities=5% Similarity=-0.065 Sum_probs=50.1
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILALC 64 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~~~ 64 (156)
+..+....++.|..|++++|...++.+....+|.++++.++.. . +|+..|.+.++..++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 4456677888999999999999999999999999999877663 2 599999888877655443
No 87
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.53 E-value=0.0088 Score=45.94 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=47.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHH-Hhhhh---hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-FLGSF---LHWRSAAILNLLFPILALCA-LYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~-~~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~lpESp 73 (156)
+....++.|+.| ++|++..++...+..+|.+++. +.... .+||+.|++.++++++..+. .++++|.|
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred HhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 445567788887 5799999999998888876543 33322 47999999998887765444 44555544
No 88
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.51 E-value=0.0039 Score=49.37 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=52.1
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp 73 (156)
++..+++.|..|++.|+...++..+...+|.++++.+... .+|++.|++.++.+++..+. .+++||+.
T Consensus 402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 4555677999999999999999999999998888766543 37998888888776665444 45567754
No 89
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.38 E-value=0.0095 Score=45.76 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=48.4
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA 62 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~ 62 (156)
+..+..+.++.|..|+++|++..++.+....+|..+++.+... .+|+..+.+.++..++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 3445667789999999999999999998888998888776553 58999988887776654
No 90
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.35 E-value=0.02 Score=44.07 Aligned_cols=63 Identities=5% Similarity=0.076 Sum_probs=50.4
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCAL 66 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~ 66 (156)
..+....+++|..|++.||+..++.+....+|..+++.+... .+ |+..+.+.++..++..+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999998888888888776553 35 9988888887766654443
No 91
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.33 E-value=0.014 Score=47.72 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=48.6
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-h-------------hHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-L-------------HWRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-~-------------~Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
.++...+.+|..|.+.|++..++.+....+|.++++.+... . ++...+++.++.+++..+..+++|
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lp 489 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP 489 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEec
Confidence 34566788999999999999999888877888777655432 1 234455666666555555557789
Q ss_pred CCh
Q psy15865 71 ESP 73 (156)
Q Consensus 71 ESp 73 (156)
|+.
T Consensus 490 Et~ 492 (502)
T TIGR00887 490 ETK 492 (502)
T ss_pred cCC
Confidence 974
No 92
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.29 E-value=0.013 Score=46.12 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=50.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
..+..+.++.|..|++.||+..++.+....+|..+++.+.... +|...+.......++..+..+++.+.
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677889999999999999999888889988888776542 56666666666655555554444333
No 93
>PRK12382 putative transporter; Provisional
Probab=96.24 E-value=0.025 Score=44.41 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=48.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.+.....+.|..|+++||+..++.+....+|..+++.+... .+|+..+.+.++..++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 45556678899999999999999988888888887766553 489999999888776654443
No 94
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.11 E-value=0.033 Score=42.87 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=51.1
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF--------------------LHWRSAAILNLLFPILAL 63 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~--------------------~~Wr~~~~~~~~~~~~~~ 63 (156)
.-+.+..|++++.+++.+.+..++.+.++.+|.+++++++.. ..|++++++.+...++..
T Consensus 27 lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 27 LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999999999999999999999999999888652 369999886655544333
Q ss_pred HHH--hhccCC
Q psy15865 64 CAL--YFIPES 72 (156)
Q Consensus 64 ~~~--~~lpES 72 (156)
+.+ .-+||.
T Consensus 107 i~~~~~~~p~~ 117 (310)
T TIGR01272 107 IIFAFLPLPEL 117 (310)
T ss_pred HHHHHccCCCC
Confidence 333 335664
No 95
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.02 E-value=0.035 Score=45.65 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=41.5
Q ss_pred ccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL 61 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~ 61 (156)
...+....++.|+.|++. |+...+++.++..+|.++++.++.+ .+||+.|++..+..++
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 345666788999998653 3345566677777888777766553 5899999998765444
No 96
>PRK10133 L-fucose transporter; Provisional
Probab=95.94 E-value=0.045 Score=44.16 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.4
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
...+....++.|+.+.+.|+...++.+.++.+|.+++++++
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888887777777677888888888888877653
No 97
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.93 E-value=0.036 Score=42.86 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=48.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
.+....++.|..|. +++...++......+|..+++.++.. .+|+..+.+.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 45566788899886 45688888777777788777766543 48999999988887777666665554
No 98
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.92 E-value=0.029 Score=45.82 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=47.1
Q ss_pred CccchhHHHHHHhhcCcch---hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHL---RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
|...+....+++|..|.+. |+...++......+|.++++.++.. .+||+.|.+.++..++.++.+
T Consensus 117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3455777889999998754 7777788788888888887777553 489999998876544443333
No 99
>PRK09952 shikimate transporter; Provisional
Probab=95.91 E-value=0.037 Score=44.49 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=47.5
Q ss_pred chhHHHHHHhhcCcchhHHHHHHH-HHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATA-SMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
.+....++.|..|.+.|+...++. .++..+|..+++.+... .+|+.++....+.+++.++..+.++|+.
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 445677889999999998777763 44444565555555433 1488888888888777766666677643
No 100
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.87 E-value=0.063 Score=42.21 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=44.1
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----SFLHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~~~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
+..|..+.+.++...+....+..+|.+++.... ...+||..|++.++..++..+..++++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456777778888877777777788888877543 3469999999999887765555444443
No 101
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.75 E-value=0.043 Score=43.41 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=41.8
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~ 64 (156)
..+..+.++.++.| ++|++..++...+..+|..++..++.. .+||..+.+..++.++.++
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 114 IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34566778889887 789999999887776776666655442 3899987766665554433
No 102
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.75 E-value=0.019 Score=45.66 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=43.5
Q ss_pred hHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 7 LVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
....|+.|..|.+.|+...+. +++...+|..+++.+... .+||..|.+.++..++. ++.++++++.|
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 344677899999988876443 455566677666655543 48999999877775554 34444444444
No 103
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.61 E-value=0.065 Score=42.05 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=47.0
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYF 68 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~ 68 (156)
..+....++.|..|++.++...+.....+.+|.++++.++.. .+|++.|.+.+...++..+..++
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 356667778899988887777777667778888888777654 47888888877777665544433
No 104
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.39 E-value=0.071 Score=43.80 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=49.2
Q ss_pred hHHHHHHhhcCcchh--HHHHHHHHHHHHHHHHHHHHhhhhh-------------------hHHHHHHHHHHHHHHH-HH
Q psy15865 7 LVLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGSFL-------------------HWRSAAILNLLFPILA-LC 64 (156)
Q Consensus 7 ~~~~~i~E~~~~~~R--g~~~~~~~~~~~~G~~l~~~~~~~~-------------------~Wr~~~~~~~~~~~~~-~~ 64 (156)
...++++|.+|+++| +...++.+.+..+|.++++.++... +-|..|.+.++..++. ++
T Consensus 134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~ 213 (477)
T TIGR01301 134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI 213 (477)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 345688999999865 5677888888888998888876542 4577888887765554 45
Q ss_pred HHhhccCCh
Q psy15865 65 ALYFIPESP 73 (156)
Q Consensus 65 ~~~~lpESp 73 (156)
..++++|.|
T Consensus 214 t~~~v~E~~ 222 (477)
T TIGR01301 214 ALSAVKENP 222 (477)
T ss_pred HeeeeeccC
Confidence 556789976
No 105
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.39 E-value=0.061 Score=44.34 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=43.6
Q ss_pred ccchhHHHHHHhhcCcc--hhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL 61 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~ 61 (156)
...+....+++|..|++ .|....++......+|.++++.+..+ .+||+.|.++++..++
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 34466678999999875 68777777777777788887777654 4899999987654333
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=95.31 E-value=0.031 Score=43.86 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=48.2
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..+....++.+..|++.||+..++......+|..+++.++.. .+|+..|.+.++..++..+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 328 LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 345556677888999999998888877777888777777653 489999999988877765543
No 107
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.31 E-value=0.068 Score=41.37 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=39.3
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPIL 61 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~ 61 (156)
+..+.++.|..+ ++|++..++.+....+|..+++.++.. .+||+.|.+..+..++
T Consensus 106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 106 VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 345567788886 689999999888888888777655432 1399988776655443
No 108
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.059 Score=43.23 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HHHhhhhhh---HHHHHHHHHHHHHH-HHHHHhhccCC
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS----QLFLGSFLH---WRSAAILNLLFPIL-ALCALYFIPES 72 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l----~~~~~~~~~---Wr~~~~~~~~~~~~-~~~~~~~lpES 72 (156)
.|+++++...+++.+.|++.+|.+.++.. .-.+|..+ ++.+....+ ||....+-.++.++ ..+.++.+-+.
T Consensus 118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 118 AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999987 55566555 444444456 99888877777555 45566677777
Q ss_pred hHH
Q psy15865 73 PHW 75 (156)
Q Consensus 73 p~~ 75 (156)
|..
T Consensus 197 p~~ 199 (417)
T COG2223 197 PEH 199 (417)
T ss_pred hhh
Confidence 765
No 109
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.27 E-value=0.15 Score=41.83 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=45.9
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HHHhhh------------------hhhHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS----QLFLGS------------------FLHWRSAAILNLLFP 59 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l----~~~~~~------------------~~~Wr~~~~~~~~~~ 59 (156)
|+.++.....+++++|+++||++.++......+|..+ .+.+.. ..+||...++-.++.
T Consensus 142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 3456778888999999999999999985444455543 332211 124777777766666
Q ss_pred HHHHH-HHhhccCCh
Q psy15865 60 ILALC-ALYFIPESP 73 (156)
Q Consensus 60 ~~~~~-~~~~lpESp 73 (156)
++..+ .++++++-|
T Consensus 222 iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 222 AIATIAAWSGMNDIA 236 (462)
T ss_pred HHHHHHHHHhCCCcc
Confidence 55543 344455544
No 110
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.05 E-value=0.077 Score=42.11 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.4
Q ss_pred HHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHH-HHHhhccCCh
Q psy15865 10 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGS-----------FLHWRSAAILNLLFPILAL-CALYFIPESP 73 (156)
Q Consensus 10 ~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----------~~~Wr~~~~~~~~~~~~~~-~~~~~lpESp 73 (156)
++..|.+ +.++|++..++.+.+..+|.+++..+.. ..+||+++.+.++.+++.. +..++++|.+
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4556777 4688999999888888887766544321 2479999998888876654 4456678875
No 111
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=95.00 E-value=0.13 Score=41.46 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHHHHH-HHHHhhh----hhhHHHHHHHHHHHHHHHHHHHh
Q psy15865 9 LTYVAEITQPHLRGMLSATASMTTIFGTV-SQLFLGS----FLHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~-l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
.++..|..|++.||+..++.+....+|.. +++.+.. ..+|+..|++....+++..+...
T Consensus 369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999998766656543 3444433 35899999888877776655443
No 112
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=94.95 E-value=0.12 Score=40.50 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=36.3
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----SFLHWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~~~~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
.+....++.++. +.|++..+...++..+|..+++.++ ...+||..|++.++..++..+..++.||.
T Consensus 112 ~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 112 VPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred ccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 334444555553 3345444444444445555555444 44699999988776554444444455664
No 113
>PRK10489 enterobactin exporter EntS; Provisional
Probab=94.88 E-value=0.11 Score=41.13 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=46.3
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH-HHHHHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL-ALCALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~-~~~~~~~lpESp 73 (156)
+....++.|..|++.||+..++......+|..+++.+... .+++..+.+.+...++ ..+....+||..
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445688999999999999999887777777777766553 4666666655554333 344445556643
No 114
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=94.85 E-value=0.16 Score=41.41 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=45.4
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA 62 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~ 62 (156)
..++...++++.+|++.||++.+++.+...+|..++..+... .+|...+...++..++.
T Consensus 398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (475)
T TIGR00924 398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLV 460 (475)
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 356778889999999999999999999999999998766543 25666666666554443
No 115
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=94.48 E-value=0.31 Score=38.57 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=29.9
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHH-HHHHHhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLFLG 43 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~-~l~~~~~ 43 (156)
+....++.+..|+++|++..++.+....+|. ++++.++
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999998888886 4666554
No 116
>PRK11010 ampG muropeptide transporter; Validated
Probab=94.33 E-value=0.17 Score=41.49 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=50.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
.+...++..+.++.+.++...++.+....+|.+++..+.+. .+|+..|.+..+.+++.++...+++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566778899999999998888888888887655444332 489999999988888876666555543
No 117
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.28 E-value=0.16 Score=41.16 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=40.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLF 58 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~ 58 (156)
.+..+.+++|..|++.||+..++......+|..+++.++.. .+|+..+.+.+..
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 35567788999999999999998877778888887776553 4788776554433
No 118
>KOG0252|consensus
Probab=94.07 E-value=0.034 Score=45.42 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=55.9
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---------LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---------~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
..++..++-+|.+|.+.|+...++.....-+|.+++.....+ .+-|..+++.....++..+..+++|||-
T Consensus 423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 344556677999999999999999888888888887655432 3678888888888888888888999973
No 119
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.01 E-value=0.15 Score=40.03 Aligned_cols=54 Identities=4% Similarity=-0.162 Sum_probs=33.9
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPI 60 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~ 60 (156)
.+....+..+. .++|++..+....+.++|.++++.++. ..+||..|.+..+..+
T Consensus 112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~ 169 (382)
T TIGR00902 112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA 169 (382)
T ss_pred hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34445555554 355666666666666666666665544 3699999888765533
No 120
>KOG2816|consensus
Probab=93.91 E-value=0.18 Score=41.30 Aligned_cols=71 Identities=30% Similarity=0.281 Sum_probs=54.8
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
+.+..+..|+++++..+.|....++....+..|..+++.++.. .+.-.+|.++.+..++. ...++++|||-
T Consensus 128 ~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4566788899999999999999999888777777777777654 46777788887776665 44567899984
No 121
>KOG0569|consensus
Probab=93.89 E-value=0.41 Score=39.50 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=44.0
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPES 72 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpES 72 (156)
|.-|+.+.+.+|.+|...|..+.++......+..++...... .+|= +.|++-.+++++. ...++++|||
T Consensus 384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 345677889999999999998887755444443333222211 1233 5666667776655 4456679998
No 122
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=93.82 E-value=0.44 Score=37.67 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=47.2
Q ss_pred ccchhHHHHHHhhcC-cchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 3 APLVLVLTYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
+..+.......+..+ ++.||+..++.+....++..+++.+..+ . +|...+.+..+.+++. .+...+.||++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 308 GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444555556667764 5788998888777777776666655543 2 4788888877776654 34456678875
No 123
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=93.80 E-value=0.38 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.354 Sum_probs=45.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~~~~ 65 (156)
..+.+..|+.+.+|++.|++..+++. +..++|..++..++++ ..|...+.+.++..++..+.
T Consensus 318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999999999864 4567888888888764 24666666666665544333
No 124
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.68 E-value=0.22 Score=39.90 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=44.6
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865 9 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~ 65 (156)
..++.|..|++.||...++.+....+|..+++.+... .+|+..|.+.++.+++..+.
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~ 419 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL 419 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999998888888887655443 47998888887776665443
No 125
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.22 E-value=0.47 Score=37.27 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=44.4
Q ss_pred hhHHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQP-HLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 6 ~~~~~~i~E~~~~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~ 65 (156)
+....++.+..++ +.+|+..++.+....+|..+++.++.. .+|+..|.+.++..++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 322 VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3444566677766 889999999888889998888877654 47888888887766665443
No 126
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.21 E-value=0.11 Score=42.33 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=42.0
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHHHH---HHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMTTI---FGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~---~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
.+-.++.|..+ +.+....+.....|. +|.+++..++.. .+||..|++.++..++.++..++++|.+
T Consensus 140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 34457788887 444333333333333 566666655543 5899999999888777666667788863
No 127
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=93.08 E-value=0.53 Score=38.77 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=33.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
..|+...++.+.+|++.||+..+++.+...+|.+++..+.
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999888888887765554
No 128
>PRK12307 putative sialic acid transporter; Provisional
Probab=92.97 E-value=0.44 Score=37.69 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=32.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
.+..+.++.|..|++.||+..++......+|..+++.+...
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~ 379 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW 379 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence 34567788999999999999998877777788777776543
No 129
>PRK03633 putative MFS family transporter protein; Provisional
Probab=92.80 E-value=0.59 Score=36.60 Aligned_cols=40 Identities=30% Similarity=0.188 Sum_probs=32.5
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
+.....+.+..++++|++..+..+.++.+|..+++.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567788899999999999999999999888877654
No 130
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=92.74 E-value=0.64 Score=37.93 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=45.7
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------------hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------HWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------------~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
+....+++++.+|++.+|...++.+....+|..++..++... -|.+ ..++.++.++.+.+.+++|+
T Consensus 369 ~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~-i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 369 FMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL-ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH-HHHHHHHHHHHHHHHHhCCC
Confidence 344578899999999999999998888899888888765531 2332 23333444444555557887
No 131
>KOG3764|consensus
Probab=92.68 E-value=0.098 Score=42.09 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred cchhHHHHHHhhcCcch-hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 4 PLVLVLTYVAEITQPHL-RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
..+....++++..|.+. |+.+++..-.+.++|.++++.++.+ .|.+.+|++.++.+++...+.+++
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 34566778888888855 7999999988999999998888764 499999999999988876666555
No 132
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=92.55 E-value=0.36 Score=37.96 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=36.0
Q ss_pred hhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hccCChH
Q psy15865 6 VLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY-FIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~-~lpESp~ 74 (156)
+....++.+..+.+. .|.......+++.+|..++..+. ..+||.+|++.++.+++..+..+ ..||.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (396)
T TIGR00882 118 GAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPS 188 (396)
T ss_pred hhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 334445555433221 13333333444445554444332 24999999999888776644443 3566543
No 133
>PRK03545 putative arabinose transporter; Provisional
Probab=92.41 E-value=1.1 Score=35.27 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=41.8
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
+....++.+..| +.|++..++......+|..+++.++. ..+++..+.+.++..++.++..
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 344566777766 57888887776666666666666544 4689999999888777655443
No 134
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.40 E-value=0.83 Score=37.58 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=54.3
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
+|+..+..-.+.+|+.|+.+.+..-+++.+.--...++++++... . +-|+.+....++.++.+++++++++
T Consensus 394 ~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 394 MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 467788889999999999999999999888777777777766443 2 4677777777777776666666655
No 135
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=92.32 E-value=0.89 Score=35.95 Aligned_cols=59 Identities=5% Similarity=0.055 Sum_probs=43.9
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 10 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
..+.|..| ++||...++.+....+|..+++.++.. .+|...+++.++..++..+..+|+
T Consensus 338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34567655 589999999998888888887766543 488888888888777766655553
No 136
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=92.26 E-value=0.48 Score=37.37 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=41.6
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-hh-hHHHHHHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-FL-HWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-~~-~Wr~~~~~~~~~~~~~~~~~ 66 (156)
++....+.+|..|++.||+..++......+|..+++.+.. .. +-...|.+-+++.++..+..
T Consensus 298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999999999988877777766554443 22 44455555555555544433
No 137
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=92.19 E-value=0.64 Score=41.73 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=44.7
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
..+...+++.+.+|.+.||+..++.++...+|.+++..++.. .++...+++.+...++. ++..+++|++-
T Consensus 339 ~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1146)
T PRK08633 339 FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDSL 414 (1146)
T ss_pred hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345567788999999999999998888877777666555443 24555555554443332 23334456554
No 138
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=92.05 E-value=0.44 Score=38.13 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=36.2
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHH-HHH-HHHHHHHhhhh---hh-HHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMT-TIF-GTVSQLFLGSF---LH-WRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~-~~~-G~~l~~~~~~~---~~-Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
....++.|++|++.|+...++.... ..+ |.. .+.+... .+ |...++..++..++.++..++++
T Consensus 356 ~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 356 ISGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4556789999999999999876433 222 332 3332222 13 55555555555555555444443
No 139
>KOG0255|consensus
Probab=91.82 E-value=0.66 Score=38.09 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=48.6
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHH-HH-HHHHHHHHHHHHHhhccCChH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH--WRSA-AI-LNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--Wr~~-~~-~~~~~~~~~~~~~~~lpESp~ 74 (156)
.+...+.+.+|..|...|....+...+...+|.++++.+-.... +..+ +. ...+..+..++...++||+..
T Consensus 423 ~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 423 AFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 34456788899999999999999999999999999887765321 1111 11 223333344455578999853
No 140
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=91.76 E-value=0.26 Score=39.16 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=42.1
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------h-HHHHHHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------H-WRSAAILNLLFPILALCA 65 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------~-Wr~~~~~~~~~~~~~~~~ 65 (156)
+....++.+..|++.||+..++.+....+|..+++.++... + -...+....+.+++..+.
T Consensus 316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999989988887776542 1 134444444444444433
No 141
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=91.65 E-value=0.24 Score=39.76 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHHHH-HHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865 10 TYVAEITQPHLRGMLSATASMTTIFG-TVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPES 72 (156)
Q Consensus 10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G-~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpES 72 (156)
..+.|.+|++.||...++.+....+| .++++.+.. ..+|...+.+.....++. ....+.+||.
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35679999999999999886654444 445544433 247888877766654444 4444566774
No 142
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=91.49 E-value=0.63 Score=36.79 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=35.7
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
....++.+..|.+.++...++..++..++..++..+....+|+.+|.+.++.+++.++..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 327 LLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 344455666666666554444333333333334344445799999999998887765554
No 143
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=91.47 E-value=0.4 Score=37.28 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=34.4
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
..+..+.++.|..|++.||+..++.+....+|..+++.+...
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999887778888887777654
No 144
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=91.39 E-value=1.3 Score=36.83 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=39.4
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPI 60 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~ 60 (156)
+...+.+.+..|++.||+..+++++....|..++.++.+. .+-+..+.++++..+
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ll 384 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALL 384 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3445677899999999999999887777666666666543 466766666655433
No 145
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.30 E-value=0.16 Score=39.16 Aligned_cols=57 Identities=5% Similarity=0.013 Sum_probs=37.9
Q ss_pred cchhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPI 60 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~ 60 (156)
..+....++.|..|++.|++..++ .++...+|..+++.++.. .+ |+..++.....++
T Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 345677788999999999987776 445555666566555443 34 8777666655443
No 146
>PRK09528 lacY galactoside permease; Reviewed
Probab=91.05 E-value=0.31 Score=38.70 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhh-ccCC
Q psy15865 20 LRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYF-IPES 72 (156)
Q Consensus 20 ~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~-lpES 72 (156)
.+|...+..+.+..+|..+++.++.. .+|+.+|++.++.+++.++..++ .+|.
T Consensus 138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 138 RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 34444444444444555555444332 48999999988887766555544 3443
No 147
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=90.81 E-value=0.018 Score=46.07 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=41.7
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
.+....+..|..|.+.|+...++.....-+|.++++.+... .+ +-......++..+...+.++++|||
T Consensus 367 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 367 GPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 34555788999999999998887665555555554444322 22 3333333333344445556789998
No 148
>PRK10504 putative transporter; Provisional
Probab=90.73 E-value=1.2 Score=35.85 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=31.3
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
.+....++.+..|++.||...++.++...+|..++..++.
T Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778999999999999988888888877766654
No 149
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=90.66 E-value=0.26 Score=37.76 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=35.1
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSA 51 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~ 51 (156)
+....++.|..|++.||+..++.+....+|..+++.+... .+|+..
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 4445678999999999999999988888888877766543 356543
No 150
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=90.37 E-value=1.3 Score=35.84 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHh-hh---------------hhhHHHHHHHHHHHHHHHHHHH
Q psy15865 9 LTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFL-GS---------------FLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~-~~---------------~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..++.|..|++.||...++......+ |..+++.+ +. ..+|+..|++..+..++.++..
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999998766554 53343222 21 2359998888766666554443
No 151
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=89.47 E-value=1 Score=40.64 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=38.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLF 58 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~ 58 (156)
.+...+++.+.+|++.||++.++.++...+|..++.++... .++...+++.++.
T Consensus 352 ~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 352 IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34566788999999999999999888888877777666443 2445555444443
No 152
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=88.95 E-value=4.3 Score=32.78 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=34.6
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
..+...++++|.+|+++|++..++.-+...+|.+++.++...
T Consensus 106 s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 106 SGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred hHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999888888899988777653
No 153
>KOG0253|consensus
Probab=88.03 E-value=0.16 Score=40.87 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=50.7
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL--HWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~--~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
.+.+.++++|.-|+.|...|+...+......-+|.+++++++.-. +=-.+..+-...+++..+..+++|=
T Consensus 449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 466778899999999999999999998888888999998887421 2223344445555555555666663
No 154
>KOG3626|consensus
Probab=87.97 E-value=1.5 Score=38.05 Aligned_cols=68 Identities=18% Similarity=0.391 Sum_probs=52.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------hHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------------HWRSAAILNLLFPIL 61 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------------~Wr~~~~~~~~~~~~ 61 (156)
++....|+=|....++-..+.++......+|+++|++++.+. .|..-|++++...++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 455667888888888889999998888888998888887641 688888888888777
Q ss_pred HHHHHhhccCC
Q psy15865 62 ALCALYFIPES 72 (156)
Q Consensus 62 ~~~~~~~lpES 72 (156)
..+.+++.|..
T Consensus 335 ~a~p~f~fPk~ 345 (735)
T KOG3626|consen 335 SAVPLFFFPKE 345 (735)
T ss_pred HHHHHHhCccc
Confidence 65555555544
No 155
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=87.19 E-value=3.6 Score=32.25 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=39.1
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~ 65 (156)
...+....|+.+. |++.|+...+++. +.+.+|..+++.+++. .++ ..+++.++.+++.++.
T Consensus 309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 3456677788887 9999988888764 4666777777766654 355 3345555554444433
No 156
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=87.08 E-value=6.3 Score=31.91 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=44.6
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------------HWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~------------~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
..++++|++|+..-|..-++......+|..++..++..+ +--+..+++.+..++.+.+.+++|+..+
T Consensus 339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 345779999999999988888777777777776665431 1223344444555555666677888654
No 157
>KOG2325|consensus
Probab=87.04 E-value=3.1 Score=34.46 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=47.5
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------hHHHHHHHHHHHHHHHHH-
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------HWRSAAILNLLFPILALC- 64 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------~Wr~~~~~~~~~~~~~~~- 64 (156)
++.++.-.|+++.+..+.|.++.+....+..+|.++|+.++..+ -+-.+-++..+..++.++
T Consensus 145 ~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~ 224 (488)
T KOG2325|consen 145 GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI 224 (488)
T ss_pred ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence 66778888999999888888888887777777777776664321 133444555555555433
Q ss_pred HHhhccCChH
Q psy15865 65 ALYFIPESPH 74 (156)
Q Consensus 65 ~~~~lpESp~ 74 (156)
+.+++.|.++
T Consensus 225 i~~~f~E~~~ 234 (488)
T KOG2325|consen 225 ILFFFKEVYR 234 (488)
T ss_pred HHhheeeccc
Confidence 3345677654
No 158
>PF13347 MFS_2: MFS/sugar transport protein
Probab=86.38 E-value=1.6 Score=34.84 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=44.2
Q ss_pred HHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHH-HHhhccC
Q psy15865 10 TYVAEITQP-HLRGMLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILALC-ALYFIPE 71 (156)
Q Consensus 10 ~~i~E~~~~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~~~~~~~~~~~~~~-~~~~lpE 71 (156)
++..|++++ ++|.+..+.-+.+..+|.++...+... .+|++...+.++..++..+ ..+..+|
T Consensus 126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 356788875 689999998888888888654444321 1799999988888766544 4556788
No 159
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=86.33 E-value=0.76 Score=37.45 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS---FLHWRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~---~~~Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
++.|+. ++.||...++...+..+|..++..+.. ..+|+..|++.++..++..+..++++
T Consensus 372 ~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 372 IVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 334543 468999998887777778877765533 23699999888877777666665554
No 160
>PRK03699 putative transporter; Provisional
Probab=86.28 E-value=2.1 Score=33.71 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=41.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
++....+..|..|.+ ++...+.......+|..+++.+... .+|+..+++..+..++.+++...+
T Consensus 312 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 312 YTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 344555667777643 5556666666667777777666543 589998888887766665544433
No 161
>KOG3762|consensus
Probab=85.27 E-value=2.1 Score=36.04 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=46.4
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
|..+.++..|++..+|++.|..+.++.+ ++.++|-=+++++++. ++=|..|...++.+++.++++.
T Consensus 474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999888753 4445555555555553 5667777777777776655543
No 162
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=84.89 E-value=5.4 Score=32.83 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
..+....++...+|++.+|..++++.+...+|..++..++
T Consensus 396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999988888888887665
No 163
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=84.78 E-value=4.2 Score=32.54 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=46.5
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----h-hhHHHHHHHHHHHHHHHHHHHh
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----F-LHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~-~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
...+..|.++.+.+|++ -+..++++.+..++|..+++.+.- . .+||..+.+=+.++++.+++++
T Consensus 115 v~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 115 VINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred HHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 34566788889999855 456677777777777777665543 2 3799999998999888877653
No 164
>PRK09669 putative symporter YagG; Provisional
Probab=84.69 E-value=6.4 Score=31.56 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=38.9
Q ss_pred HHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhh-----h------hhhHHHHHHHHHHHHHHHHHH-HhhccC
Q psy15865 10 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLG-----S------FLHWRSAAILNLLFPILALCA-LYFIPE 71 (156)
Q Consensus 10 ~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~-----~------~~~Wr~~~~~~~~~~~~~~~~-~~~lpE 71 (156)
++.+|++ +.++|++..+.-..+..+|.+++..+. . ..+|+..+.+.++.+++.++. ++..+|
T Consensus 132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 4668888 447899887777666666666554322 1 137888887777766554433 334444
No 165
>KOG0254|consensus
Probab=84.66 E-value=3.3 Score=34.12 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=38.1
Q ss_pred chhHHHHHHhhcCcchhHHHHHHH-HHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHH-HH-HHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATA-SMTTIFGTVSQLFLGSFLHW---RSAAILNLLFPIL-AL-CALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~~~W---r~~~~~~~~~~~~-~~-~~~~~lpES 72 (156)
.++...+.+|+.|.+.|+...++. .+.|....++....-....+ ...|..-...+.+ .. ...+++||+
T Consensus 413 g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 413 GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred ccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 345556889999999999988774 44444444443322222222 2333333333333 33 456778997
No 166
>PRK10054 putative transporter; Provisional
Probab=84.63 E-value=3 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=39.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp 73 (156)
+....++.+..|++.|+.+.+..+. ..+|..+++.++.. .+-...+++..+...+.++ ....+.|.|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 4555678899999999988775543 33566666655443 4555566665444333333 333344444
No 167
>PRK11462 putative transporter; Provisional
Probab=83.42 E-value=7.1 Score=31.75 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHhhcC-cchhHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy15865 10 TYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILAL-CALYFIPES 72 (156)
Q Consensus 10 ~~i~E~~~-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~~~~~~~~~~~~~-~~~~~lpES 72 (156)
++..|+++ .++|+.+.+.-+.+..+|.++++.+... .+|+....+.++++++.. +.++..+|.
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 35688887 5889999999888888887666544221 257877766666655443 333345664
No 168
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=83.36 E-value=3.3 Score=34.16 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=49.0
Q ss_pred hhHHHHHHhhcCcc--hhHHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 6 VLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 6 ~~~~~~i~E~~~~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
.+=++++++..+.+ ..|..+++.+++..+.+++..+..+.+ +-.+.+.+.+++.++. ++.++.+|.++
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34466788888854 449999999999999999988655442 3456777888887765 44456678765
No 169
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=83.19 E-value=4.7 Score=32.42 Aligned_cols=57 Identities=11% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 12 VAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 12 i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
..|..|. .+|...++.+....+|.++++.+... .+|+..|.+.++..++..+...+.
T Consensus 386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 3466654 89999999988888888887766442 248888888887777665544433
No 170
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=82.97 E-value=8.4 Score=27.64 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=41.4
Q ss_pred ccchhHHHHHHhhcCc-chhHHHHHHHHH-HHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQP-HLRGMLSATASM-TTIFGTVSQLFLGSF------LHWRSAAILNLLFPIL 61 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~-~~Rg~~~~~~~~-~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~ 61 (156)
...+....++.|+.|. ..|+...+.... ...+|.++++.++.. .+||..+.+.......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 110 GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3556778899999998 678888777766 566777777655432 3799876666665543
No 171
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=82.90 E-value=15 Score=30.75 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=43.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~ 64 (156)
.|.-.+++.|+.|+++-..+.++.++...+..++++.+++. .|-.+.|++.++..++..+
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788999999999989998888888877777766654 4667777777765444333
No 172
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=82.78 E-value=1.5 Score=34.97 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHH
Q psy15865 10 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFP 59 (156)
Q Consensus 10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~ 59 (156)
+...|..|++.|+...++.+....+|.++++.+... . +|+..+.+..+..
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 344678899999999999988888888888766543 2 5888777665543
No 173
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=81.59 E-value=10 Score=23.59 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=37.2
Q ss_pred chhHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 5 ~~~~~~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.+..|..+.|.. ....-|+..+.+.+++.+|.+++..+......|..+.++.+.+++.++.+
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 456677777764 44555666666666666666665544444455566666666666655444
No 174
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=81.10 E-value=7.9 Score=30.61 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=28.5
Q ss_pred cchhHHHHHHhhcC-------cchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 4 PLVLVLTYVAEITQ-------PHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 4 ~~~~~~~~i~E~~~-------~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
..+....+++|..+ .+.+|...++.+....+|..++..+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 328 VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777764 556788888888877777777665543
No 175
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=80.36 E-value=4.3 Score=32.47 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865 30 MTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 30 ~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
+++.+|.+++..++....|+. |++.++..++.++..+++||+|+
T Consensus 141 lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 141 IGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence 455556655554433334554 44555555555455667899873
No 176
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=79.76 E-value=9.2 Score=21.88 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 34 FGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 34 ~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+|++.+++.+...+......++.+.+++...+...+|..+
T Consensus 17 vgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 17 VGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444455555556888888888888888776666666543
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=79.44 E-value=11 Score=30.34 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=44.9
Q ss_pred hHHHHHHhhcC--cchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 7 LVLTYVAEITQ--PHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 7 ~~~~~i~E~~~--~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
....++.+.++ ++.++...++++..+.+|+.++.+++.. .++....+++++..++.+...
T Consensus 317 ~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 317 ALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred hhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 34445555555 5788888999888888888888887764 588999899888877765544
No 178
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=79.01 E-value=20 Score=29.60 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=44.4
Q ss_pred hHHHHHHhhcCcchh--------------------------HHHHHHHHHHHHHHHHHHHHhhhh------------hhH
Q psy15865 7 LVLTYVAEITQPHLR--------------------------GMLSATASMTTIFGTVSQLFLGSF------------LHW 48 (156)
Q Consensus 7 ~~~~~i~E~~~~~~R--------------------------g~~~~~~~~~~~~G~~l~~~~~~~------------~~W 48 (156)
.-..|+-|+++++.+ ++.++.-.....+|.++..++... .+-
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~ 225 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI 225 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence 344577888888887 777776544444566555544332 235
Q ss_pred HHHHHHHHHHHH-HHHHHHhhccCChH
Q psy15865 49 RSAAILNLLFPI-LALCALYFIPESPH 74 (156)
Q Consensus 49 r~~~~~~~~~~~-~~~~~~~~lpESp~ 74 (156)
|+.+.+.++.-+ ..+..++++||.|+
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 888888877744 45667778898875
No 179
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=78.69 E-value=7.4 Score=30.44 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=32.3
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL 46 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~ 46 (156)
..+....+..|..| +.+|...++.+....+|..++..++...
T Consensus 316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556667788886 5789999999888889998888776654
No 180
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=77.78 E-value=19 Score=28.24 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=44.9
Q ss_pred CccchhHHHHHHhhcCcch---hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHL---RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
|+.=+.+..+++|-.+.+. |...-..+..+..+|.+++..+..+ .+|.+.|.++.+..++.++.+
T Consensus 48 G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 48 GGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 3445677888888887653 4444456677777888888766554 479999999888777665554
No 181
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=77.52 E-value=14 Score=30.08 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=50.4
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhc
Q psy15865 9 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESPHWLISKY 80 (156)
Q Consensus 9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~ 80 (156)
+.|+--..++++-.++.+..-....+|.+++.+++.. .+.+.++.++.....+.++..+++|-.++-+.-++
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 4566556677777777777777777777777777664 36788888887776777777778888766444443
No 182
>PRK10429 melibiose:sodium symporter; Provisional
Probab=77.21 E-value=16 Score=29.73 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865 10 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGS-----------FLHWRSAAILNLLFPILA-LCALYFIPES 72 (156)
Q Consensus 10 ~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----------~~~Wr~~~~~~~~~~~~~-~~~~~~lpES 72 (156)
.++.|++ +.++|.++.+.-..+..+|.++...+.. ..+|++...+.++..++. ++.++..+|-
T Consensus 129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 4668988 5789999888766666665444332211 125777766666665543 3344446774
No 183
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=76.95 E-value=18 Score=28.63 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=34.7
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL 61 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~ 61 (156)
.+....++.+..|. .+++..++......+|..+++.++.. .+++..+..+++..++
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 323 PVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred hHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 34455577888874 45555555555666666666666553 4778877777665443
No 184
>KOG3810|consensus
Probab=76.58 E-value=7.4 Score=31.23 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=50.9
Q ss_pred HHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhcCh
Q psy15865 9 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESPHWLISKYLP 82 (156)
Q Consensus 9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~~~ 82 (156)
+.|+-+..+++++.+..+..-.....|.++++.++.. ++...+-.++.....+..+.-+|+|.-+|-+.-+.+.
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 4566667788999888888777777777777777654 3566666666666555566666777777655544443
Q ss_pred h
Q psy15865 83 I 83 (156)
Q Consensus 83 ~ 83 (156)
+
T Consensus 196 ~ 196 (433)
T KOG3810|consen 196 D 196 (433)
T ss_pred c
Confidence 3
No 185
>PRK09848 glucuronide transporter; Provisional
Probab=75.63 E-value=20 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=26.0
Q ss_pred chhHHHHHHhhcCcc-------hhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 5 LVLVLTYVAEITQPH-------LRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~-------~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
.+.....++|..+.. .+|...++.++...+|..++..+.
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667776543 458888888888777777765543
No 186
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=74.32 E-value=1 Score=37.71 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
.++....|+=|..+++.-+.+.++......+|+.+|++++.
T Consensus 158 l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~ 198 (539)
T PF03137_consen 158 LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGS 198 (539)
T ss_dssp -----------------------------------------
T ss_pred CccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHH
Confidence 46778889999999999999999999999999999888875
No 187
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=73.36 E-value=5.9 Score=32.03 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=38.5
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
|+.++.++..+.|-.++++|...++...++-++|.+++.+++..
T Consensus 350 Ga~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 350 GASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55677778888998999999999999999999999999888764
No 188
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=72.65 E-value=30 Score=28.74 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=32.1
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHH-HHHHHHHHHHhhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMT-TIFGTVSQLFLGS 44 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~-~~~G~~l~~~~~~ 44 (156)
..|+....+++.+|++.||..++++.+. ..+|..++..++.
T Consensus 394 ~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 394 IDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999999998764 3677777655543
No 189
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=72.21 E-value=9.9 Score=29.80 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=34.9
Q ss_pred HHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHH
Q psy15865 10 TYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILAL 63 (156)
Q Consensus 10 ~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~ 63 (156)
.++.+..+.+.++...+. .+....+|..+++.++. ..+|+..|.+.++..++..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 355666777777664444 45566666666665544 3588999988887765543
No 190
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=72.16 E-value=9.4 Score=30.91 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=41.0
Q ss_pred HHHhhcC--cchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccC
Q psy15865 11 YVAEITQ--PHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPE 71 (156)
Q Consensus 11 ~i~E~~~--~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpE 71 (156)
.++|... +..||...+.......+|.+++..+++. .+++..|.+..++..+..+. .++.+|
T Consensus 110 ~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 110 LVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 4566652 2337888888777888888888877664 47888888887776655443 444454
No 191
>PRK09669 putative symporter YagG; Provisional
Probab=71.54 E-value=22 Score=28.45 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=22.7
Q ss_pred cchhHHHHHHhhcC-------cchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 4 PLVLVLTYVAEITQ-------PHLRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 4 ~~~~~~~~i~E~~~-------~~~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
..+....+++|..+ .+..|...++...+..+|..++..++
T Consensus 336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777764 23345566666655556655554443
No 192
>KOG2504|consensus
Probab=71.38 E-value=5.7 Score=33.05 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy15865 8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~ 64 (156)
+.+.+..++ .++|+.+.++...+.++|.++-+.+.-. .+||..+++...+.+-.++
T Consensus 156 aiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~ 215 (509)
T KOG2504|consen 156 AVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV 215 (509)
T ss_pred hhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344445444 5889999999999999988776655443 5999999888877654433
No 193
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=70.60 E-value=15 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHHHHHH-----HHH-HHHHHhhccCChHHHHHhcChhhHhHHHHHH
Q psy15865 49 RSAAILNLLF-----PIL-ALCALYFIPESPHWLISKYLPIGLSALATSA 92 (156)
Q Consensus 49 r~~~~~~~~~-----~~~-~~~~~~~lpESp~~l~~~~~~~~a~~~l~~a 92 (156)
|+++++..++ .++ .+++++.+|+-|.........+.+...++..
T Consensus 37 Rl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~ 86 (118)
T PRK10697 37 RIIVVLSIFFGLFVFTLVAYIILSFALDPMPDNMAFGEQQPSSSELLDEV 86 (118)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhccCCcccccccccCCCHHHHHHHH
Confidence 6655544432 233 2445567888885433333333433333333
No 194
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=69.95 E-value=22 Score=26.71 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=39.2
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
.....+| ++||.+.++.-.+.+++..+-..+... -.-..++++...+.++.++..+++..-
T Consensus 120 t~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 120 TCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 3356677 589999999887777766554443322 245667777777777666665555333
No 195
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=69.89 E-value=25 Score=29.09 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHHhhcCc-chhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHHHh-hccCC
Q psy15865 11 YVAEITQP-HLRGMLSATASMTTIFGTVSQLFLGS-----------FLHWRSAAILNLLFPILALCALY-FIPES 72 (156)
Q Consensus 11 ~i~E~~~~-~~Rg~~~~~~~~~~~~G~~l~~~~~~-----------~~~Wr~~~~~~~~~~~~~~~~~~-~lpES 72 (156)
+..|+++. ++|..+.+.-+.+..+|.++...+.. ..+|+..-.+-++.++++++..+ -..|-
T Consensus 136 l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 136 LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44677754 88999999999999998777654432 24788887777777666655443 34443
No 196
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.60 E-value=8.2 Score=19.35 Aligned_cols=28 Identities=11% Similarity=-0.193 Sum_probs=17.7
Q ss_pred HHHHhcChhhHhHHHHHHHHHHHHhhCC
Q psy15865 75 WLISKYLPIGLSALATSAKNMLLFSYGT 102 (156)
Q Consensus 75 ~l~~~~~~~~a~~~l~~a~~~l~~~~~~ 102 (156)
.+..+|+.++|..+.+++..+.+++.|.
T Consensus 11 ~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 11 AYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 3567899999999999998888777664
No 197
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=69.57 E-value=29 Score=27.11 Aligned_cols=60 Identities=18% Similarity=0.025 Sum_probs=33.1
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
+....++.+. ++.++++..++.. ....+|..+++.+++. .++. .+++.++.+++.++...
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~~~ 376 (382)
T PRK11128 312 LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFIRP 376 (382)
T ss_pred HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHH
Confidence 4445566675 4555677666654 4445565666665553 3553 45555555555444443
No 198
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=69.33 E-value=23 Score=28.82 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=46.6
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----------------------hhHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----------------------LHWRSAAILNLLFPIL 61 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------------------~~Wr~~~~~~~~~~~~ 61 (156)
-+.+..|+....+++.-...+.+.|.+..+|.+++++++.. ..|+.++...+...++
T Consensus 122 etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvl 201 (422)
T COG0738 122 ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVL 201 (422)
T ss_pred HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34556788888888777777788888999988888877542 1477777776666555
Q ss_pred HHHHHh--hccCCh
Q psy15865 62 ALCALY--FIPESP 73 (156)
Q Consensus 62 ~~~~~~--~lpESp 73 (156)
+.+... .+|+-+
T Consensus 202 l~v~~~~~k~p~~~ 215 (422)
T COG0738 202 LAVLILLSKLPDLQ 215 (422)
T ss_pred HHHHHHhccCCcCC
Confidence 444332 345544
No 199
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=69.32 E-value=33 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.323 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy15865 50 SAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~lp 70 (156)
|-+++....+++.+++.+++.
T Consensus 41 WQLviNt~ttIitFlmvfLIQ 61 (132)
T PF04120_consen 41 WQLVINTATTIITFLMVFLIQ 61 (132)
T ss_pred HHHHHccHHHHHHHHHHHHHH
Confidence 334666666777666665543
No 200
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=69.31 E-value=10 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.021 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865 47 HWRSAAILNLLFPILALCALYFIPES 72 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~lpES 72 (156)
-|.++|+++.++++..++....++-+
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~~~ 48 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLGNW 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 58999999999998887776555443
No 201
>PRK10091 MFS transport protein AraJ; Provisional
Probab=68.79 E-value=29 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=29.4
Q ss_pred HHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHH
Q psy15865 12 VAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILAL 63 (156)
Q Consensus 12 i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~ 63 (156)
+.+..+.+.++... .+..+.+|..+++.++.. .+|+..+.+..+.+++..
T Consensus 315 ~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 315 LQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM 369 (382)
T ss_pred HHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence 34444555555442 344556666666655443 478888888876655543
No 202
>KOG2532|consensus
Probab=66.82 E-value=13 Score=30.63 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=39.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHhh
Q psy15865 17 QPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAILNLLFPILALCALYF 68 (156)
Q Consensus 17 ~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~~~~~~~~~~~~~~~~ 68 (156)
.+++-+.++++.+...++..++++.+... -.||++|++.++..++..+.+.+
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 56777888888888888888887766443 38999999999987776554433
No 203
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=66.80 E-value=33 Score=27.04 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=34.2
Q ss_pred hhHHHHHHhhcCcch-hHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q psy15865 6 VLVLTYVAEITQPHL-RGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLF 58 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~ 58 (156)
+.....+.|..|.+. +|+..++.++...+|..++..+... ..+...+...++.
T Consensus 312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345556678766655 7999888888888887777665443 2455555444444
No 204
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=66.55 E-value=22 Score=20.30 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=25.1
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy15865 15 ITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSA 51 (156)
Q Consensus 15 ~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~ 51 (156)
+..+++...+..........|..-+..+.++..||.+
T Consensus 5 ~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklI 41 (56)
T PF08997_consen 5 LIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLI 41 (56)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhh
Confidence 4455666666666666667777777777778889974
No 205
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=65.46 E-value=33 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=31.9
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy15865 15 ITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA 62 (156)
Q Consensus 15 ~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~ 62 (156)
..+++.||+..++.++...+|..++..+... .+|....+...+.+++.
T Consensus 336 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 336 FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 3445889999999888888888777766553 35555555544444443
No 206
>PRK10429 melibiose:sodium symporter; Provisional
Probab=65.40 E-value=39 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=22.3
Q ss_pred chhHHHHHHhhcC-------cchhHHHHHHHHHHHHHHHHHHHHh
Q psy15865 5 LVLVLTYVAEITQ-------PHLRGMLSATASMTTIFGTVSQLFL 42 (156)
Q Consensus 5 ~~~~~~~i~E~~~-------~~~Rg~~~~~~~~~~~~G~~l~~~~ 42 (156)
.+....+++|..+ .+..|...+...+..-+|..++..+
T Consensus 342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888855 3344556666666655665555443
No 207
>PRK15075 citrate-proton symporter; Provisional
Probab=64.52 E-value=18 Score=28.93 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.9
Q ss_pred hHHHHHHhhcCcchhHHHHHHH
Q psy15865 7 LVLTYVAEITQPHLRGMLSATA 28 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~ 28 (156)
....++.|..|++.|+...++.
T Consensus 351 ~~~~~~~e~~p~~~rg~~~g~~ 372 (434)
T PRK15075 351 AMVVALTEVMPAEVRTAGFSLA 372 (434)
T ss_pred hHHHHHHHHCCCCccchheeHH
Confidence 4456789999999999987764
No 208
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=64.35 E-value=22 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChHHH
Q psy15865 47 HWRSAAILNLLFPILALCALYFIPESPHWL 76 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l 76 (156)
++|+++++...++++.++..+|+++.-+++
T Consensus 531 ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 531 AYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 799999999999999999999998876554
No 209
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=63.43 E-value=27 Score=21.14 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 27 TASMTTIFGTVSQLFLGSFL-HWRSAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 27 ~~~~~~~~G~~l~~~~~~~~-~Wr~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+.+....++.+++.++|+.. +-+..+.+-++-.++.++ ..+|.=|
T Consensus 12 l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l--v~vP~Wp 57 (76)
T PF06645_consen 12 LMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL--VVVPPWP 57 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--heeCCcH
Confidence 44555566667777777653 455555544443333322 2356544
No 210
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=62.01 E-value=41 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHH-----H-HHHHHhhccCChHHH
Q psy15865 47 HWRSAAILNLLFPI-----L-ALCALYFIPESPHWL 76 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~-----~-~~~~~~~lpESp~~l 76 (156)
-.|++|++..+++. + .++++++||+-|.-+
T Consensus 30 ~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~~ 65 (121)
T TIGR02978 30 LVRILVVSALLFGGGFFVLVAYIALWLLLDKKPINL 65 (121)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcccc
Confidence 45777776655422 2 234556788888543
No 211
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=61.98 E-value=57 Score=28.21 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=38.9
Q ss_pred CccchhHHHHHHhhcCcchhH---HHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRG---MLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg---~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
|+.-+...++..|-...+.+. ..-.++.++..+|.+++..+..+ .+|...|.++++..++.++.+
T Consensus 100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 455567777888877654433 33334444555566655444222 158888888888766655543
No 212
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.58 E-value=4.2 Score=27.27 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15865 49 RSAAILNLLFPILALCAL 66 (156)
Q Consensus 49 r~~~~~~~~~~~~~~~~~ 66 (156)
||++++.++.+++++++.
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 556666655555544443
No 213
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=59.46 E-value=18 Score=29.55 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=50.7
Q ss_pred CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
+|+..+.+-.|.++..|+.+-++.-+++.++--...++++++-.. -+=|.-+....++..+.++...++|+
T Consensus 355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 477888899999999999999998888888777777776655332 24566555555555555555566665
No 214
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=57.90 E-value=22 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHH---H-HHHHHhhccCCh
Q psy15865 47 HWRSAAILNLLFPI---L-ALCALYFIPESP 73 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~---~-~~~~~~~lpESp 73 (156)
-+|..|.+..++.. + .+++.+.+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 46888887776532 2 234456678865
No 215
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=57.80 E-value=56 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=24.2
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHH-HHHHHHHHHHhh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMT-TIFGTVSQLFLG 43 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~-~~~G~~l~~~~~ 43 (156)
.+....+..|..| +.||+..++.+.. +..|.+.++.++
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677776 5788888875544 445666666665
No 216
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=56.90 E-value=20 Score=23.19 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865 46 LHWRSAAILNLLFPILA-LCALYFIPESP 73 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~-~~~~~~lpESp 73 (156)
.+|+.+++++...++++ .+++.+.||+.
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 48999999988776554 55566788875
No 217
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=55.68 E-value=70 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhh
Q psy15865 8 VLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGS 44 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~ 44 (156)
...++.|..| +.||...++.. ....+|.+++..++.
T Consensus 308 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 308 AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566665 78888877653 345567777766643
No 218
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=54.34 E-value=20 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=28.6
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
.......+..|+++||...++......+|..++..+..
T Consensus 368 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 368 PLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788899999988888888888877766544
No 219
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=53.99 E-value=14 Score=28.18 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHHHHHHHHh
Q psy15865 19 HLRGMLSATASMTTIFGTVSQLFLGSF---------LHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 19 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~---------~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
+.|+..+.+...++.+|.+++.+...+ -+|++++.+.+++.++-++.+.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888876544221 3799999999888666555443
No 220
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=52.99 E-value=93 Score=23.14 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=28.1
Q ss_pred HhhhhhhHHHHHHHHHHH-HHHH-HHHHhhccCChHHHHHhcChhhHhHHHHHHHHHHHHhhC
Q psy15865 41 FLGSFLHWRSAAILNLLF-PILA-LCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYG 101 (156)
Q Consensus 41 ~~~~~~~Wr~~~~~~~~~-~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~a~~~l~~~~~ 101 (156)
++++.+++-|.+++.+++ ++++ ++.+-.--|...|--..|+... |..++..+++
T Consensus 44 ~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGA-------a~avL~~lr~ 99 (224)
T PF13829_consen 44 LIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGA-------AGAVLDNLRR 99 (224)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch-------HHHHHHhhcC
Confidence 334444544555555555 3333 2223334566666666777777 4555555554
No 221
>KOG2504|consensus
Probab=51.77 E-value=8.6 Score=32.02 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=48.4
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
....+..+.|+.+...-....++..++.+++.++++-++..+ +|...|+++++..++....++.+|
T Consensus 406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 344456778888888877788888888888888877665542 588899998888777665555544
No 222
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=51.42 E-value=20 Score=29.27 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=27.3
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
+.....+.+..|++.+|...++.++...+|..++..+..
T Consensus 370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 370 LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888887777777777777665544
No 223
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=50.65 E-value=1.3e+02 Score=25.03 Aligned_cols=38 Identities=11% Similarity=-0.065 Sum_probs=32.0
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
+-..+..|++..++-.|.-+++.++.++|.+++..+..
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999876544
No 224
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=49.34 E-value=1.4e+02 Score=25.19 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-h-------------HHHHHHHHHHHHHHHHHHHh----hccC
Q psy15865 10 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-H-------------WRSAAILNLLFPILALCALY----FIPE 71 (156)
Q Consensus 10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-~-------------Wr~~~~~~~~~~~~~~~~~~----~lpE 71 (156)
.+..|++..++-.|..+++.++..++.+++..+..+. . -+.++.+....+++.++... .+.+
T Consensus 171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~ 250 (509)
T COG3202 171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLT 250 (509)
T ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3557888889999999999999999888876665432 2 33344444444444433333 3577
Q ss_pred ChHHHHH
Q psy15865 72 SPHWLIS 78 (156)
Q Consensus 72 Sp~~l~~ 78 (156)
.|+++..
T Consensus 251 ~~~f~~~ 257 (509)
T COG3202 251 DPLFYLR 257 (509)
T ss_pred CcchhHH
Confidence 7877643
No 225
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=49.27 E-value=67 Score=26.17 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred chhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~ 65 (156)
...+.=|+.+..|++...+.-.+ .++...+|..+.+.+++. .|.+..+++.+...++..++
T Consensus 330 lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 330 LVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 34556699999999988766655 477777777776666553 47887777766665554333
No 226
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=47.81 E-value=83 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHhhcCcchh-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy15865 10 TYVAEITQPHLR-GMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNL 56 (156)
Q Consensus 10 ~~i~E~~~~~~R-g~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~ 56 (156)
.+..+..|.+.| |...++..+...+|..++.++....++.....+..
T Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 313 AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 344556665444 55555666666667777666665556554333333
No 227
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=47.58 E-value=1e+02 Score=22.05 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---ccCChHHHHHhcCh----hhHhHHHHHHHHHHHHhhCCC
Q psy15865 47 HWRSAAILNLLFPILALCALYF---IPESPHWLISKYLP----IGLSALATSAKNMLLFSYGTT 103 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~---lpESp~~l~~~~~~----~~a~~~l~~a~~~l~~~~~~~ 103 (156)
+....+++..+.+++.++.++. -+..++.+-..|-. +.....+.+++.-++++....
T Consensus 28 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~~~ 91 (199)
T PF10112_consen 28 GFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEKAI 91 (199)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554333322 23333444444322 122355666666666555543
No 228
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=47.11 E-value=46 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=21.6
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRS 50 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~ 50 (156)
+...-++.|+-...+|..+. . ..+|.++.++++..+.||.
T Consensus 9 sf~sef~~dW~a~Dmrv~if---k--llL~WlvlsLl~I~lAWk~ 48 (92)
T PF15128_consen 9 SFLSEFVDDWEANDMRVQIF---K--LLLGWLVLSLLAIHLAWKV 48 (92)
T ss_pred HHHHHHHHHHHhccHHHHHH---H--HHHHHHHHHHHHHHHHHHH
Confidence 34444566666667765322 1 2345555566666666664
No 229
>PF15050 SCIMP: SCIMP protein
Probab=46.92 E-value=83 Score=21.01 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=9.8
Q ss_pred hHHHHHhcChhh
Q psy15865 73 PHWLISKYLPIG 84 (156)
Q Consensus 73 p~~l~~~~~~~~ 84 (156)
-||+.++|+.-+
T Consensus 31 cR~~lRqGkkwe 42 (133)
T PF15050_consen 31 CRWQLRQGKKWE 42 (133)
T ss_pred HHHHHHccccce
Confidence 479999998877
No 230
>KOG0055|consensus
Probab=46.32 E-value=1.4e+02 Score=28.03 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=22.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy15865 37 VSQLFLGSFLHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 37 ~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
+++..++++.+||..+.+.++.+++.+....
T Consensus 797 ~~~iiiaf~~~W~lalv~la~~Pll~~~~~~ 827 (1228)
T KOG0055|consen 797 IIGIIIAFIYGWRLALVVLATFPLLILSGYL 827 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778999998888887777655543
No 231
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=45.69 E-value=25 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865 47 HWRSAAILNLLFPILALCALYFIP 70 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~lp 70 (156)
.|.++|+++++++++.++.+...|
T Consensus 29 ww~~~f~~~i~~~~~y~~~yp~~~ 52 (285)
T TIGR00782 29 WWLWTFYATIVWGFGYLVAYPAWP 52 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 699999999999999888776665
No 232
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=43.19 E-value=21 Score=29.25 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy15865 8 VLTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFLGSF----LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~ 64 (156)
.-+-..|..|++--|.+.++...+..+ |..++.+.-.. .+|-..|++..+.+++..+
T Consensus 367 iGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 367 IGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence 334458999999999999888777666 65554433222 4898888887777666533
No 233
>PRK03612 spermidine synthase; Provisional
Probab=42.65 E-value=1.3e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy15865 21 RGMLSATASMTTIFGTVSQLFL 42 (156)
Q Consensus 21 Rg~~~~~~~~~~~~G~~l~~~~ 42 (156)
-|++.+...++..+|.++..++
T Consensus 147 ~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 147 VATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred hhhhHhHHhHHHHHHHHHHHHH
Confidence 3455555555555555554333
No 234
>KOG0637|consensus
Probab=42.55 E-value=8.2 Score=31.87 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHhhcCcchhHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy15865 8 VLTYVAEITQPHLRGM-LSATASMTTIFGTVSQLFLGSFLHWRSAAILN 55 (156)
Q Consensus 8 ~~~~i~E~~~~~~Rg~-~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~ 55 (156)
+-++++|.+.+..+.+ +.+.+..+.++|..+++.++.+.+|+-.|-+.
T Consensus 163 ~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~~~Ft 211 (498)
T KOG0637|consen 163 CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKIFPFT 211 (498)
T ss_pred HHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceEEeehH
Confidence 3458888887766666 88999999999999999998766665444433
No 235
>KOG2563|consensus
Probab=42.28 E-value=67 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=23.4
Q ss_pred HhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 13 AEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 13 ~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
.-|+++.+|..+.++-.++-.+|..++.++.-
T Consensus 166 ~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 166 AVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 34579999999888877776677777666643
No 236
>KOG1278|consensus
Probab=40.69 E-value=65 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=19.5
Q ss_pred hhcCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy15865 14 EITQPHLRGMLSATASMTTIFGTVSQLFL 42 (156)
Q Consensus 14 E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~ 42 (156)
-+..+..||.+++...+.+.++.+++.-+
T Consensus 354 GflSPs~RGsLmT~~~~l~v~~G~~agY~ 382 (628)
T KOG1278|consen 354 GFLSPSSRGSLMTAMVLLFVFMGFVAGYV 382 (628)
T ss_pred ccCCccccccHHHHHHHHHHHHHHhhhhh
Confidence 44577889988887776666655554433
No 237
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=40.56 E-value=1.5e+02 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=27.0
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 15 ITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 15 ~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
-+|+++|..+.+++.+...+|.++...+...
T Consensus 593 ~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~ 623 (654)
T TIGR00926 593 QAPPNMKSVLQALWLLTVAIGNLIVVVIAEF 623 (654)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999999998888664
No 238
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=40.04 E-value=1e+02 Score=19.85 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhhh--------hHHHHHHHHHHHHH
Q psy15865 31 TTIFGTVSQLFLGSFL--------HWRSAAILNLLFPI 60 (156)
Q Consensus 31 ~~~~G~~l~~~~~~~~--------~Wr~~~~~~~~~~~ 60 (156)
...+.++++..++.++ .|-.+|++.++...
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 3333445555555543 35555555544433
No 239
>KOG3764|consensus
Probab=38.90 E-value=44 Score=27.45 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy15865 20 LRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC 64 (156)
Q Consensus 20 ~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~ 64 (156)
.-|...++.+..+++|+.+++.+++. ++.+|...+.++..++...
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP 448 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999888775 4778877777777666533
No 240
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=38.58 E-value=1.3e+02 Score=20.58 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=17.1
Q ss_pred HHhhcCcchhHHHHHHHHHHHH
Q psy15865 12 VAEITQPHLRGMLSATASMTTI 33 (156)
Q Consensus 12 i~E~~~~~~Rg~~~~~~~~~~~ 33 (156)
+.|++|+..|......+.....
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 5799999999988877664443
No 241
>COG4291 Predicted membrane protein [Function unknown]
Probab=38.39 E-value=1.6e+02 Score=21.67 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH--HHHHHHHHH-HhhccCChHHHHHhcChhh
Q psy15865 32 TIFGTVSQLFLGSFLHWRSAAILNL--LFPILALCA-LYFIPESPHWLISKYLPIG 84 (156)
Q Consensus 32 ~~~G~~l~~~~~~~~~Wr~~~~~~~--~~~~~~~~~-~~~lpESp~~l~~~~~~~~ 84 (156)
..+|..++..+.+.+.|-.-..+++ +++...++. .....=||+++-++-+.++
T Consensus 27 a~lg~vlall~~~~~~~~~a~~igan~ff~~yl~L~~~~lp~~tp~~l~a~Ar~~D 82 (228)
T COG4291 27 AALGGVLALLLALALSRPLAILIGANLFFLAYLLLAVLRLPRLTPSYLKAHARRED 82 (228)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHhHHHHHHHHHHHHHHhcccCCHHHHHHhccccC
Confidence 3455666666655544433222322 233322222 3344678999988765544
No 242
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=37.68 E-value=81 Score=21.86 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=11.4
Q ss_pred hHHHHHHhhcCcchhHHHHHH
Q psy15865 7 LVLTYVAEITQPHLRGMLSAT 27 (156)
Q Consensus 7 ~~~~~i~E~~~~~~Rg~~~~~ 27 (156)
....|+.+...++.|++..++
T Consensus 109 aqg~ylt~~s~~~~~~~~~~i 129 (156)
T PF05978_consen 109 AQGTYLTSYSTEETIGRNTGI 129 (156)
T ss_pred hhhHHHHHcCCHHHHhhHHHH
Confidence 334455566666666555544
No 243
>PRK11043 putative transporter; Provisional
Probab=35.73 E-value=1.3e+02 Score=23.51 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=22.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
+....+..|..| +.||+..++.......+..++..+..
T Consensus 315 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 315 PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556665 57898888877655544444444433
No 244
>PHA03048 IMV membrane protein; Provisional
Probab=35.46 E-value=1.2e+02 Score=19.16 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy15865 46 LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..||.+..++.+.++++++..
T Consensus 41 ~~wRalsii~FIlgivl~lG~ 61 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGM 61 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 379999999998887765543
No 245
>PHA03239 envelope glycoprotein M; Provisional
Probab=34.89 E-value=2.6e+02 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=17.3
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG 43 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~ 43 (156)
++.+.++.|..-.+.- =.+.+..+|.++++...
T Consensus 276 ~iiyliv~E~vL~~Yv-----~vl~G~~lG~lia~~iL 308 (429)
T PHA03239 276 GIIYLMMAELTVAHYV-----HVLIGPHLGMIIACAIA 308 (429)
T ss_pred HHHHHHHHHHHHHHHh-----hhcccchHHHHHHHHHH
Confidence 4455566776644431 13455566666665443
No 246
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=34.69 E-value=39 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy15865 46 LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.+||...++.++.+++.+.+.
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 379999999998888765554
No 247
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=34.21 E-value=2.4e+02 Score=22.89 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=38.4
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH---HHhhhh-----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQ---LFLGSF-----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~---~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
|+.++...+++..-+...+.. ..+..+..++|++++ +++.++ -+|+.....-....+.+.+.-
T Consensus 311 G~~F~laL~li~~rs~~a~~A--a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIA--AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred chHHHHHHHHHHhhcCChHHH--HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 567778888887777654432 233444456666654 333332 279988877777766665544
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=34.05 E-value=67 Score=16.53 Aligned_cols=20 Identities=15% Similarity=-0.150 Sum_probs=13.5
Q ss_pred HHHHHhcChhhHhHHHHHHH
Q psy15865 74 HWLISKYLPIGLSALATSAK 93 (156)
Q Consensus 74 ~~l~~~~~~~~a~~~l~~a~ 93 (156)
+.+...|+.++|.+.++++.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45678899999655555544
No 249
>PHA03242 envelope glycoprotein M; Provisional
Probab=34.02 E-value=2.7e+02 Score=22.95 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHhhCCCCC
Q psy15865 85 LSALATSAKNMLLFSYGTTLG 105 (156)
Q Consensus 85 a~~~l~~a~~~l~~~~~~~~~ 105 (156)
...+-+++++.+++.++..+.
T Consensus 362 v~~~~~~~~~~~~r~r~~~~~ 382 (428)
T PHA03242 362 VRDARHRARSYIRRVRSSMRN 382 (428)
T ss_pred HHHHHHHHHHHHHHhhCcCCC
Confidence 334455677777777765443
No 250
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=32.86 E-value=31 Score=28.80 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=38.0
Q ss_pred cchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHH
Q psy15865 4 PLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~ 65 (156)
.=+....+++|..|+.. |-..-++..++..+|.++++++.. ..+|+..|.++++=-.+.++.
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 33556678888886633 222334455555667777666654 358999998887754444333
No 251
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=32.24 E-value=1.7e+02 Score=20.18 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.8
Q ss_pred HHhhcCcchhHHHHHHHHHHHH
Q psy15865 12 VAEITQPHLRGMLSATASMTTI 33 (156)
Q Consensus 12 i~E~~~~~~Rg~~~~~~~~~~~ 33 (156)
+.|++|+..|..+...+.....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 5799999999988776654433
No 252
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=32.11 E-value=2.1e+02 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.6
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
.++...++.-.+|+...+..++++-+....|+.++..++.
T Consensus 412 SpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred CHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 4667778888899999999999999999999988766655
No 253
>KOG2513|consensus
Probab=31.03 E-value=2.5e+02 Score=24.30 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=10.8
Q ss_pred HHhhccCChHHHHH
Q psy15865 65 ALYFIPESPHWLIS 78 (156)
Q Consensus 65 ~~~~lpESp~~l~~ 78 (156)
+...+||+|+|...
T Consensus 589 is~vipe~p~wva~ 602 (647)
T KOG2513|consen 589 ISSVIPESPRWVAA 602 (647)
T ss_pred HHHhcCCChHHHHH
Confidence 44568999999864
No 254
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=30.83 E-value=62 Score=26.43 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=31.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
+.+.+|..+..++++|..++.+..++..+|..+|..+++.
T Consensus 391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788889888888888888888888776653
No 255
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=30.07 E-value=66 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=8.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHH
Q psy15865 35 GTVSQLFLGSFLHWRSAAILN 55 (156)
Q Consensus 35 G~~l~~~~~~~~~Wr~~~~~~ 55 (156)
|..++..++...+|..+++.+
T Consensus 8 g~~l~l~~~~~~~~~~p~~~p 28 (140)
T PF11168_consen 8 GVTLGLFLSKLFGWPLPFFAP 28 (140)
T ss_pred HHHHHHHHHHHHCCCchHHHH
Confidence 333444444444444443333
No 256
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=29.26 E-value=1.6e+02 Score=24.50 Aligned_cols=18 Identities=17% Similarity=0.901 Sum_probs=13.1
Q ss_pred HHHHHHhhccCChHHHHH
Q psy15865 61 LALCALYFIPESPHWLIS 78 (156)
Q Consensus 61 ~~~~~~~~lpESp~~l~~ 78 (156)
+...+-+|.||-|.|...
T Consensus 114 i~~y~~~WfP~vP~Wv~a 131 (462)
T COG1113 114 IGIYLQFWFPDVPQWVFA 131 (462)
T ss_pred HHHHHHHhcCCCcHHHHH
Confidence 345556788999999754
No 257
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=28.89 E-value=1.5e+02 Score=22.79 Aligned_cols=12 Identities=50% Similarity=1.370 Sum_probs=9.5
Q ss_pred HhhccCChHHHH
Q psy15865 66 LYFIPESPHWLI 77 (156)
Q Consensus 66 ~~~lpESp~~l~ 77 (156)
...+||||.|..
T Consensus 105 ~~~lp~TP~~~i 116 (320)
T PF03845_consen 105 TYLLPETPIWVI 116 (320)
T ss_pred HHhcCcCCHHHH
Confidence 457899998865
No 258
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.81 E-value=1.8e+02 Score=19.07 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.5
Q ss_pred hHHHH--HhcChhh
Q psy15865 73 PHWLI--SKYLPIG 84 (156)
Q Consensus 73 p~~l~--~~~~~~~ 84 (156)
++|+. ++||.|.
T Consensus 67 g~~l~rlKRGrPe~ 80 (111)
T TIGR03750 67 GKLLARLKRGKPEG 80 (111)
T ss_pred HHHHHHHHcCCCch
Confidence 34443 3455544
No 259
>PHA02898 virion envelope protein; Provisional
Probab=26.98 E-value=1.7e+02 Score=18.41 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy15865 46 LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
..||.+..++.+.++++++..
T Consensus 42 ~~wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 42 SALRSISIISFILAIILILGI 62 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999888776544
No 260
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.34 E-value=2.2e+02 Score=19.52 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=22.0
Q ss_pred hHHHHHhcChhhHhHHHHHHHHHHHHhh
Q psy15865 73 PHWLISKYLPIGLSALATSAKNMLLFSY 100 (156)
Q Consensus 73 p~~l~~~~~~~~a~~~l~~a~~~l~~~~ 100 (156)
-+-++.+.+..+|.+.|.+....+++.+
T Consensus 31 Y~~yv~rs~R~~a~A~L~~~a~~~Er~y 58 (139)
T COG4968 31 YQNYVLRSRRSAAKAALLENAQFMERYY 58 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888899888888877888777
No 261
>KOG4112|consensus
Probab=26.11 E-value=1.8e+02 Score=18.52 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy15865 24 LSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 24 ~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
+=-+.+...++|.+++.+++++
T Consensus 24 aEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 24 AERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888888875
No 262
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=26.10 E-value=1.6e+02 Score=24.76 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred hhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHH
Q psy15865 14 EITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAI 53 (156)
Q Consensus 14 E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~ 53 (156)
-...+..||...+...+.+.++..++..++.. ..|+...+
T Consensus 288 g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~ 334 (521)
T PF02990_consen 288 GFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSI 334 (521)
T ss_pred hhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhh
Confidence 44566778888877666666655554444332 26875443
No 263
>PHA03237 envelope glycoprotein M; Provisional
Probab=26.08 E-value=3.7e+02 Score=22.11 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=12.8
Q ss_pred hHhHHHHHHHHHHHHhhCCCC
Q psy15865 84 GLSALATSAKNMLLFSYGTTL 104 (156)
Q Consensus 84 ~a~~~l~~a~~~l~~~~~~~~ 104 (156)
....+-+++++.+++.++..+
T Consensus 364 ~v~~~~~~~~~~~~r~r~~~~ 384 (424)
T PHA03237 364 RVKTVQQKVKRYLNRVRGGRR 384 (424)
T ss_pred HHHHHHHHHHHHHHHhhcCCC
Confidence 334445567777777776444
No 264
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.78 E-value=3e+02 Score=20.98 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=5.2
Q ss_pred CcchhHHHHHH
Q psy15865 17 QPHLRGMLSAT 27 (156)
Q Consensus 17 ~~~~Rg~~~~~ 27 (156)
++..|.++.++
T Consensus 8 ~~~er~k~~~~ 18 (301)
T PF14362_consen 8 SPAERNKYAGI 18 (301)
T ss_pred ChHHHHHHHHH
Confidence 44555554443
No 265
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=25.59 E-value=2.5e+02 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=19.7
Q ss_pred CccchhHHHHHHhhcCcchhHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSA 26 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~ 26 (156)
|++...+.+.+....|+++|.++.-
T Consensus 11 s~DN~~vi~~~~~~lp~~~r~kal~ 35 (183)
T PF03741_consen 11 SIDNAFVIAMIFRKLPPEQRRKALF 35 (183)
T ss_pred HhhHHHHHHHHHhCCCHHHhhhhHH
Confidence 5677788888999999988876653
No 266
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=24.98 E-value=4e+02 Score=22.06 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-ChHHHH
Q psy15865 49 RSAAILNLLFPILALCALYFIPE-SPHWLI 77 (156)
Q Consensus 49 r~~~~~~~~~~~~~~~~~~~lpE-Sp~~l~ 77 (156)
|..+.+..+..++..+..++.|. |+-|+.
T Consensus 89 k~~~~~f~~i~i~~~~~L~~i~~~s~~~~~ 118 (438)
T COG2270 89 KKFFGFFTAIGIISTFLLWFIPPGSYLLLL 118 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 34445556667777777888888 776653
No 267
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=24.54 E-value=98 Score=19.48 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy15865 47 HWRSAAILNLLFPILALCALYF 68 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~ 68 (156)
-||+-.+.-.+.+++-++.+||
T Consensus 15 pWrls~I~d~Fwgi~~fI~lFF 36 (91)
T PF10961_consen 15 PWRLSRITDFFWGIINFIVLFF 36 (91)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 4777777776666665554433
No 268
>KOG2615|consensus
Probab=24.35 E-value=1e+02 Score=25.32 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=32.3
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
+....++.-.-|...||.+.++.+...+++-.+++++++
T Consensus 371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 371 TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence 445567788889999999999998888888888888874
No 269
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.78 E-value=2e+02 Score=18.08 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15865 47 HWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.||.+..++.+.++++++..
T Consensus 44 ~wRalSii~FIlG~vl~lGi 63 (91)
T PHA02680 44 VWRALSVTCFIVGAVLLLGL 63 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 69999999988887765543
No 270
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.77 E-value=1.3e+02 Score=16.18 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=7.9
Q ss_pred HHHHhcChhh
Q psy15865 75 WLISKYLPIG 84 (156)
Q Consensus 75 ~l~~~~~~~~ 84 (156)
|.+++|++++
T Consensus 23 Wavk~GQfdD 32 (45)
T PF03597_consen 23 WAVKSGQFDD 32 (45)
T ss_pred HHHccCCCCC
Confidence 6788888876
No 271
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=23.73 E-value=1.1e+02 Score=15.14 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhccCChH
Q psy15865 52 AILNLLFPILALCALYFIPESPH 74 (156)
Q Consensus 52 ~~~~~~~~~~~~~~~~~lpESp~ 74 (156)
|++.+..+++.+.+ +..|.||
T Consensus 8 fll~~tlgiiFFAI--fFRepPr 28 (31)
T PRK11875 8 LILTLALVTLFFAI--AFRDPPK 28 (31)
T ss_pred HHHHHHHHHHHHhh--hccCCCC
Confidence 33333444443333 3356665
No 272
>PTZ00207 hypothetical protein; Provisional
Probab=23.45 E-value=4.3e+02 Score=22.74 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=49.8
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--HHhhhhh----------------hHHHHHHHHHHHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQ--LFLGSFL----------------HWRSAAILNLLFPILAL 63 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~--~~~~~~~----------------~Wr~~~~~~~~~~~~~~ 63 (156)
|..+++.+..++|++. ++-|..--+..+...+|.++- .+.+..+ =.|..|++.+..+++.+
T Consensus 467 G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~ 545 (591)
T PTZ00207 467 GFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAF 545 (591)
T ss_pred hHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHH
Confidence 5667888999999999 888888877777778877764 2333321 16788888877777665
Q ss_pred HHHhh-ccCChHHH
Q psy15865 64 CALYF-IPESPHWL 76 (156)
Q Consensus 64 ~~~~~-lpESp~~l 76 (156)
+.... .-++.+++
T Consensus 546 ~~s~~l~~R~r~~y 559 (591)
T PTZ00207 546 ITSTYVHLQYRRLC 559 (591)
T ss_pred HHHhheeeehHHHH
Confidence 54333 23444443
No 273
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=23.23 E-value=2.4e+02 Score=21.85 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=8.6
Q ss_pred HhhccCChHHHH
Q psy15865 66 LYFIPESPHWLI 77 (156)
Q Consensus 66 ~~~lpESp~~l~ 77 (156)
.+.+||+|.|..
T Consensus 107 ~~~l~~tp~~~~ 118 (359)
T TIGR00912 107 TYLLPRTPIIVI 118 (359)
T ss_pred HHhcCCCCHHHH
Confidence 356899997753
No 274
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=23.16 E-value=1.6e+02 Score=17.63 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=6.5
Q ss_pred HHHHhhccCCh
Q psy15865 63 LCALYFIPESP 73 (156)
Q Consensus 63 ~~~~~~lpESp 73 (156)
++..+.+|+.|
T Consensus 54 iia~~imP~~~ 64 (70)
T COG1983 54 IIAALIMPSEE 64 (70)
T ss_pred HHHHHHCCCCc
Confidence 34455677765
No 275
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=22.75 E-value=3.5e+02 Score=20.57 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=23.4
Q ss_pred hhHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy15865 6 VLVLTYVAEI-TQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAI 53 (156)
Q Consensus 6 ~~~~~~i~E~-~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~ 53 (156)
+..+.+..|. .+...-|...++..++..++.++...+.-..+.|....
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVA 69 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH
Confidence 4445555555 24444455555555555555555444443334444333
No 276
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.1e+02 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15865 48 WRSAAILNLLFPILA 62 (156)
Q Consensus 48 Wr~~~~~~~~~~~~~ 62 (156)
|.|.|++...+..++
T Consensus 11 WKw~f~iLLAln~l~ 25 (197)
T COG4698 11 WKWLFFILLALNTLL 25 (197)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888776664443
No 277
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.41 E-value=2.1e+02 Score=18.03 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15865 47 HWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.||.+..++.+.++++.+..
T Consensus 43 ~wRalSii~FI~giil~lG~ 62 (92)
T PF05767_consen 43 TWRALSIICFILGIILTLGI 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988776644
No 278
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=22.27 E-value=2.1e+02 Score=22.90 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh--------------hhhHHHHHHHHHHHHHHH
Q psy15865 21 RGMLSATASMTTIFGTVSQLFLGS--------------FLHWRSAAILNLLFPILA 62 (156)
Q Consensus 21 Rg~~~~~~~~~~~~G~~l~~~~~~--------------~~~Wr~~~~~~~~~~~~~ 62 (156)
|..+.-++-....+|+.++..+.. .+.|+..++++.+..++.
T Consensus 39 RT~~tllvHs~LPlgY~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~s~~~~~~~ 94 (358)
T PF10272_consen 39 RTSATLLVHSCLPLGYFIGMCFFAPEDDLSRFPELPDFPLFWKLFLWASVLLPLLA 94 (358)
T ss_pred HhHHHHHHHHHHHHHHHhheeEeecccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 444444556666667766543321 137888888877664444
No 279
>PF12854 PPR_1: PPR repeat
Probab=22.22 E-value=88 Score=15.29 Aligned_cols=14 Identities=7% Similarity=-0.384 Sum_probs=9.3
Q ss_pred HHHhcChhhHhHHH
Q psy15865 76 LISKYLPIGLSALA 89 (156)
Q Consensus 76 l~~~~~~~~a~~~l 89 (156)
+-+.|+.++|..++
T Consensus 17 ~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 17 YCKAGRVDEAFELF 30 (34)
T ss_pred HHHCCCHHHHHHHH
Confidence 45788999954444
No 280
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=21.93 E-value=1e+02 Score=19.23 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy15865 46 LHWRSAAILNLLFPILALCA 65 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~~~~ 65 (156)
--||-+.++.++|++++..+
T Consensus 14 ~~WkkiS~~va~P~v~l~~~ 33 (86)
T cd00925 14 ELWKKISFYVALPAVALCML 33 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 35999999999998765443
No 281
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=21.70 E-value=4.2e+02 Score=21.08 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 25 SATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 25 ~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
.+.......+|-+++..+....+.|..+.+..+.+.+..+...+.+.
T Consensus 275 ~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~ 321 (410)
T TIGR00885 275 NIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG 321 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444555667777766665567776666666665555444444443
No 282
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.38 E-value=2.4e+02 Score=18.14 Aligned_cols=28 Identities=4% Similarity=-0.162 Sum_probs=12.5
Q ss_pred HHHHHhcChhhHhHHHHHHHHHHHHhhC
Q psy15865 74 HWLISKYLPIGLSALATSAKNMLLFSYG 101 (156)
Q Consensus 74 ~~l~~~~~~~~a~~~l~~a~~~l~~~~~ 101 (156)
++.-.+.+.++...-+.+...-+..+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444444433333333
No 283
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=21.18 E-value=2.1e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCh
Q psy15865 50 SAAILNLLFPILALCALYFIPESP 73 (156)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~lpESp 73 (156)
+.+++.+..+++.....+.+|+.|
T Consensus 160 ~~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 160 LIFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc
Confidence 344555555555444556789887
No 284
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=21.10 E-value=5.2e+02 Score=21.92 Aligned_cols=33 Identities=9% Similarity=0.246 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy15865 21 RGMLSATASMTTIFGTVSQLFLGSFLHWRSAAI 53 (156)
Q Consensus 21 Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~ 53 (156)
.|...+.+..++.+..+.+.++.-.++.|..+.
T Consensus 64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~ 96 (511)
T TIGR00806 64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLV 96 (511)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 566677777777777766666655444443333
No 285
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=20.98 E-value=3.5e+02 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=20.2
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHH
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSAT 27 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~ 27 (156)
|++...+.+.+.+-.|.++|.++..+
T Consensus 8 S~DN~~via~~~~~LP~~~r~~al~~ 33 (215)
T TIGR03716 8 SADNALVLAVMVKHLPEKQRKKALFY 33 (215)
T ss_pred HhhHHHHHHHHHhhCCHHHHHHHHHH
Confidence 56777888888899999888776543
No 286
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.94 E-value=1.7e+02 Score=22.74 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy15865 37 VSQLFLGSFLHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 37 ~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
..++..+.+..|-+.-++..+++|++.++..
T Consensus 250 AAtaA~aaF~Pcgiaalvllil~vvliiLYi 280 (295)
T TIGR01478 250 AASAATSTFLPYGIAALVLIILTVVLIILYI 280 (295)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3344444455677766666666666655544
No 287
>PRK15021 microcin C ABC transporter permease; Provisional
Probab=20.82 E-value=4.2e+02 Score=21.02 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHHH
Q psy15865 31 TTIFGTVSQLFLGSFLHW------RSAAILNLLFPILA 62 (156)
Q Consensus 31 ~~~~G~~l~~~~~~~~~W------r~~~~~~~~~~~~~ 62 (156)
...+|.++|.+.++.-+| |..-.+.++|.+++
T Consensus 154 s~iiGi~lG~iag~~gg~~D~~i~~i~~i~~siP~~~l 191 (341)
T PRK15021 154 SSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFL 191 (341)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhHHHHH
Confidence 334455555555544333 45555666665544
No 288
>KOG4040|consensus
Probab=20.55 E-value=1.5e+02 Score=20.83 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChHHH
Q psy15865 47 HWRSAAILNLLFPILALCALYFIPESPHWL 76 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l 76 (156)
+|..+++....+.-..+++++|.-|-|+|.
T Consensus 127 ~w~~~~mcl~g~~~~~l~~~y~~d~~p~yk 156 (186)
T KOG4040|consen 127 TWNSIVMCLRGLVPMALLAWYFTDEHPRYK 156 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 688766655444444456667788877664
No 289
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=20.47 E-value=4.3e+02 Score=22.56 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.3
Q ss_pred HhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 13 AEITQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 13 ~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
..+..+++++.+.+...++.++|+++++.+..
T Consensus 144 LT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFl 175 (544)
T PF13000_consen 144 LTMLSPENVGYASTCQTVGQTAGYFLSFTVFL 175 (544)
T ss_pred hhhcChhhcchHHHHHHhHhhhhHHHHHHHHH
Confidence 44567889999999999999999999876643
No 290
>KOG4686|consensus
Probab=20.46 E-value=4.2e+02 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.0
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
.++-+.|.+.-|+.-+..|....+|..+.++++.+
T Consensus 376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 45566677788888888888888888887777654
No 291
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.45 E-value=2.9e+02 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15865 42 LGSFLHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 42 ~~~~~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
++...+| |++.+..++.++.+..+
T Consensus 103 lGla~g~-Wl~~iG~~~~i~~~~G~ 126 (137)
T PF12270_consen 103 LGLAFGW-WLILIGAVLLIVAVVGW 126 (137)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444577 88888877766655543
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=20.32 E-value=95 Score=14.03 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHhcChhhHhHH
Q psy15865 76 LISKYLPIGLSAL 88 (156)
Q Consensus 76 l~~~~~~~~a~~~ 88 (156)
+...|+.++|..+
T Consensus 11 ~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 11 LLAQGDPDEAERL 23 (26)
T ss_pred HHHcCCHHHHHHH
Confidence 4567888885443
No 293
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=20.31 E-value=2.3e+02 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865 44 SFLHWRSAAILNLLFPILALCALYFIPE 71 (156)
Q Consensus 44 ~~~~Wr~~~~~~~~~~~~~~~~~~~lpE 71 (156)
.+-+|.++++++.+++++.+++.+++|+
T Consensus 19 Lw~~k~~Ii~~t~~~~~~~~~~s~~~~~ 46 (342)
T PRK11638 19 LWAGKLWIIGMALLFALIALGYSFLARQ 46 (342)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3457777777777777777666666554
No 294
>KOG1237|consensus
Probab=20.27 E-value=1.4e+02 Score=25.43 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865 16 TQPHLRGMLSATASMTTIFGTVSQLFLGS 44 (156)
Q Consensus 16 ~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~ 44 (156)
+|+++|....+++.+..++|.+++.++..
T Consensus 487 aP~sMkS~~~al~l~t~a~G~~lss~Lv~ 515 (571)
T KOG1237|consen 487 APESMKSVATALWLLTVAVGNYLSSVLVS 515 (571)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998877753
No 295
>PTZ00370 STEVOR; Provisional
Probab=20.24 E-value=1.7e+02 Score=22.68 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=17.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy15865 37 VSQLFLGSFLHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 37 ~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
..++..+.+..|-+.-++..+++|++.++..
T Consensus 246 AAtaAsaaF~Pygiaalvllil~vvliilYi 276 (296)
T PTZ00370 246 AASAASSAFYPYGIAALVLLILAVVLIILYI 276 (296)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3333444455676666666666666655544
Done!