Query psy15865
Match_columns 156
No_of_seqs 131 out of 1490
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:20:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.5 1.1E-13 3.9E-18 109.6 9.8 90 2-91 141-242 (491)
2 3o7q_A L-fucose-proton symport 98.2 9.4E-06 3.2E-10 62.8 8.8 72 3-74 133-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 98.1 1.3E-06 4.4E-11 67.9 3.2 73 3-75 135-213 (451)
4 2gfp_A EMRD, multidrug resista 97.9 6.3E-06 2.2E-10 62.8 3.7 72 4-75 105-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 97.7 7.4E-05 2.5E-09 58.8 6.1 64 3-66 124-193 (491)
6 4gc0_A D-xylose-proton symport 97.4 0.00046 1.6E-08 54.2 7.3 68 5-72 388-466 (491)
7 2xut_A Proton/peptide symporte 97.2 0.001 3.6E-08 52.7 8.0 66 2-67 124-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 96.7 0.0065 2.2E-07 46.8 8.2 65 4-68 363-432 (451)
9 2cfq_A Lactose permease; trans 96.0 0.0064 2.2E-07 47.0 4.2 69 6-74 331-405 (417)
10 4aps_A DI-OR tripeptide H+ sym 95.8 0.01 3.5E-07 46.5 4.9 69 4-72 403-475 (491)
11 2xut_A Proton/peptide symporte 94.2 0.034 1.2E-06 43.9 3.6 41 5-45 423-463 (524)
12 3o7q_A L-fucose-proton symport 89.6 0.67 2.3E-05 35.2 5.8 65 2-68 362-431 (438)
13 2cfq_A Lactose permease; trans 87.7 0.025 8.5E-07 43.7 -3.5 53 20-72 135-191 (417)
14 2gfp_A EMRD, multidrug resista 85.4 0.37 1.3E-05 36.0 2.1 51 3-54 307-361 (375)
15 2fyu_K Ubiquinol-cytochrome C 55.1 24 0.00083 19.3 4.3 36 16-51 6-41 (56)
16 1v54_G Cytochrome C oxidase po 28.3 71 0.0024 19.0 3.4 21 46-66 14-34 (85)
17 3arc_T Photosystem II reaction 27.2 60 0.002 15.5 2.6 6 69-74 23-28 (32)
18 3mk7_C Cytochrome C oxidase, C 22.7 2.1E+02 0.0073 20.9 5.9 21 47-67 57-77 (311)
19 3qww_A SET and MYND domain-con 21.9 91 0.0031 24.2 3.9 26 77-102 393-418 (433)
20 2y69_G Cytochrome C oxidase po 20.9 1.2E+02 0.0039 18.6 3.4 20 47-66 27-46 (97)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.49 E-value=1.1e-13 Score=109.59 Aligned_cols=90 Identities=28% Similarity=0.466 Sum_probs=79.9
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------------LHWRSAAILNLLFPILALCALYFI 69 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------------~~Wr~~~~~~~~~~~~~~~~~~~l 69 (156)
|+..+++++|++|++|++.|++..++.+.++.+|.++++++++. ..||+++.+..+++++.++.++++
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV 220 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC
Confidence 56788999999999999999999999999999999998887653 379999999999999999999999
Q ss_pred cCChHHHHHhcChhhHhHHHHH
Q psy15865 70 PESPHWLISKYLPIGLSALATS 91 (156)
Q Consensus 70 pESp~~l~~~~~~~~a~~~l~~ 91 (156)
||||+|+..+++.+++.+.+++
T Consensus 221 peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 221 PESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHH
T ss_pred CCChHHHHHcCchhHHHHhHHH
Confidence 9999999999999995544443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.15 E-value=9.4e-06 Score=62.82 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=56.7
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh------------------------------HHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH------------------------------WRSAA 52 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~------------------------------Wr~~~ 52 (156)
...+....++.|+.|+++|++..++.+.+..+|.++++.++.... ||+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 212 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH
Confidence 445678889999999999999999999999999999988876543 99999
Q ss_pred HHHHHHHHHHHHHH--hhccCChH
Q psy15865 53 ILNLLFPILALCAL--YFIPESPH 74 (156)
Q Consensus 53 ~~~~~~~~~~~~~~--~~lpESp~ 74 (156)
++.++..++..+.. ...||+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 213 MIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc
Confidence 87776655543333 34688765
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.11 E-value=1.3e-06 Score=67.91 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=60.8
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILA-LCALYFIPESPHW 75 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~-~~~~~~lpESp~~ 75 (156)
...+....++.|++|+++|++..++.+.+..+|.++++.++.. .+ ||+.|++.++++++. ++..+++||+|+.
T Consensus 135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 3567788899999999999999999999999999888877653 46 999999999887665 4455778999864
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.92 E-value=6.3e-06 Score=62.76 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=60.0
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChHH
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPHW 75 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~~ 75 (156)
..+....++.|+.|+++|++..++.+.+..+|.++++.++.. .+||+.+.+.++..++..+ ..+++||+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 456778899999999999999999999999999998887664 4899999998888776655 55678998764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.66 E-value=7.4e-05 Score=58.82 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=49.9
Q ss_pred ccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
+..+....+++|++|++. |+...++.+....+|.++++.++.. .+||+.|++.++..++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999988 7777777888888888888777654 589999999877766554443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.38 E-value=0.00046 Score=54.19 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=46.2
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIPES 72 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lpES 72 (156)
.++.++|.+|+.|.+.|+...++......+|.+++..+... .++...+++.+..+++. ++.++++|||
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677899999999999999998777666666665433211 23444555655555554 4455789998
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.25 E-value=0.001 Score=52.69 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=51.6
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHH---HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSAT---ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
|...+....++.|++|++.|+...+. .+.+..+|.++++.++.. .+||+.|++.++..++.++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 124 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999876666 788888888888877654 4899999998888666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.73 E-value=0.0065 Score=46.79 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=51.0
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFLGSF----LHWRSAAILNLLFPILALCALYF 68 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~ 68 (156)
..+....++.|..|++.||...++.+....+ |..+++.+... .+|+..+++.++..++..+..++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455668899999999999999999888888 88888777554 37899988888877766555444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.96 E-value=0.0064 Score=47.04 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=48.0
Q ss_pred hhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865 6 VLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESPH 74 (156)
Q Consensus 6 ~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~ 74 (156)
+....++.|..|.+.||...++ .+....+|..+++.++.. .++...|.+.++.+++..+. .++.+|.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 3456799999999999998777 466666777776666543 47888888877776665544 344566543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.84 E-value=0.01 Score=46.48 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=48.5
Q ss_pred cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHH-hhccCC
Q psy15865 4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCAL-YFIPES 72 (156)
Q Consensus 4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~~~~~~~~~~~~~~~~-~~lpES 72 (156)
..+....++.|..|++.||...++......+|..+++.+.... ++...+.+.++.+++..+.. ++.++.
T Consensus 403 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 403 ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999988886543 45556666666655544433 334443
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.21 E-value=0.034 Score=43.85 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=34.0
Q ss_pred chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865 5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF 45 (156)
Q Consensus 5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~ 45 (156)
.+....++.|..|++.||+..++..+...+|..+++.+...
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678999999999999999999999999888877553
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=89.58 E-value=0.67 Score=35.23 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=41.9
Q ss_pred CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHHhh
Q psy15865 2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCALYF 68 (156)
Q Consensus 2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~~~ 68 (156)
++..+....+..|..|++ |+...++.. ...+|..+++.+... .+ ++..+++..+..++.+++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999876 777777665 344677776666543 35 888777766555444444333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=87.67 E-value=0.025 Score=43.67 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhc-cCC
Q psy15865 20 LRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYFI-PES 72 (156)
Q Consensus 20 ~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~l-pES 72 (156)
.|+...+....+..+|..+++.++.. .+||+.|++.++++++.++..++. ||+
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34443444444445555555544432 479999998887766555554444 454
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=85.45 E-value=0.37 Score=36.00 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=38.3
Q ss_pred ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHH
Q psy15865 3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAIL 54 (156)
Q Consensus 3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~ 54 (156)
...+....++.|..| +.||+..++.+....+|..+++.+... .+|+..+.+
T Consensus 307 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 307 MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 345667788999998 899999999998888888887666543 245555544
No 15
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=55.15 E-value=24 Score=19.33 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=23.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy15865 16 TQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSA 51 (156)
Q Consensus 16 ~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~ 51 (156)
..++....+..........|...+..+.++.+||.+
T Consensus 6 ~g~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~I 41 (56)
T 2fyu_K 6 LGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (56)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccHhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHH
Confidence 345555566666666666677666667777788864
No 16
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=28.34 E-value=71 Score=19.04 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy15865 46 LHWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 46 ~~Wr~~~~~~~~~~~~~~~~~ 66 (156)
.-||-+.++.++|++++..+-
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n 34 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLN 34 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999988765543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.15 E-value=60 Score=15.55 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=3.9
Q ss_pred ccCChH
Q psy15865 69 IPESPH 74 (156)
Q Consensus 69 lpESp~ 74 (156)
..|.|+
T Consensus 23 FRePPr 28 (32)
T 3arc_T 23 FREPPR 28 (32)
T ss_dssp TSCCCC
T ss_pred hcCCCC
Confidence 467775
No 18
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=22.68 E-value=2.1e+02 Score=20.86 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q psy15865 47 HWRSAAILNLLFPILALCALY 67 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~~ 67 (156)
-|-++|++++++++..++++.
T Consensus 57 ww~~~f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 57 WWFLLFIGTLVFGILYLVLYP 77 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 589999999998888777654
No 19
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=21.87 E-value=91 Score=24.17 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=23.5
Q ss_pred HHhcChhhHhHHHHHHHHHHHHhhCC
Q psy15865 77 ISKYLPIGLSALATSAKNMLLFSYGT 102 (156)
Q Consensus 77 ~~~~~~~~a~~~l~~a~~~l~~~~~~ 102 (156)
..+|++++|...+++|.++....+|.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999998885
No 20
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.88 E-value=1.2e+02 Score=18.59 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15865 47 HWRSAAILNLLFPILALCAL 66 (156)
Q Consensus 47 ~Wr~~~~~~~~~~~~~~~~~ 66 (156)
-||-+.++.++|++++..+-
T Consensus 27 ~WkkiS~~va~P~v~l~~~n 46 (97)
T 2y69_G 27 TWRFLTFGLALPSVALCTLN 46 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 59999999999988765543
Done!