BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15872
         (96 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
           Ion Channel K2p1 (Twik-1)
 pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
           Ion Channel K2p1 (Twik-1)
 pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
           Ion Channel K2p1 (Twik-1)
 pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
           Ion Channel K2p1 (Twik-1)
          Length = 280

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 19  YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           +  I A VF+  E+ W+FL+  YFCF++LSTIG GD VPG+ + +   ++
Sbjct: 185 FFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFREL 234



 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 32  EWSFLDGAYFCFVTLSTIGFGDLVP----GKSFQRTDTQI--------------DIVIEI 73
            W F    +F    LST G+G  VP    GK+F    + I               I + +
Sbjct: 91  NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150

Query: 74  SVRPTLGVRPRYATGDQ 90
           + RP L    R+    Q
Sbjct: 151 TRRPVLYFHIRWGFSKQ 167


>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
           Channel Traak (K2p4.1)
 pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
           Channel Traak (K2p4.1)
 pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
           Complex Structure
 pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
           Complex Structure
          Length = 309

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 26  VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPG 57
           VF   E+WS L+  YF  VTL+T+GFGD V G
Sbjct: 216 VFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAG 247


>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
 pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
          Length = 97

 Score = 33.5 bits (75), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVR 82
          G   ++  E    +D  YF  VTL+T+GFGD  P   F +  T + I I I +    G  
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL--VFGFI 78

Query: 83 PRYATGDQEETALT 96
           + A   Q  + L+
Sbjct: 79 HKLAVNVQLPSILS 92


>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
 pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
          Length = 97

 Score = 32.3 bits (72), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVR 82
          G   ++  E    +D  YF  VTL+T+G+GD  P   F +  T + I I I +    G  
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL--VFGFI 78

Query: 83 PRYATGDQEETALT 96
           + A   Q  + L+
Sbjct: 79 HKLAVNVQLPSILS 92


>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
 pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
          Length = 97

 Score = 31.2 bits (69), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVR 82
          G   ++  E    +D  YF  VTL+T+G+G+  P   F +  T + I I I +    G  
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL--VFGFI 78

Query: 83 PRYATGDQEETALT 96
           + A   Q  + L+
Sbjct: 79 HKLAVNVQLPSILS 92


>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
 pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
          Length = 97

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVR 82
          G   ++  E    +D  +F  VTL+T+G+GD  P   F +  T + I I I +    G  
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL--VFGFI 78

Query: 83 PRYATGDQEETALT 96
           + A   Q  + L+
Sbjct: 79 HKLAVNVQLPSILS 92


>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
 pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
          Length = 97

 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
          G   ++  E    +D  YF  VTL+T+G+G+  P   F +  T + I I I +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73


>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
 pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
          Length = 97

 Score = 30.4 bits (67), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETAL 95
          +D  +F  VTL+T+G+GD  P   F +  T + I I I +    G   + A   Q  + L
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL--VFGFIHKLAVNVQLPSIL 91

Query: 96 T 96
          +
Sbjct: 92 S 92


>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
 pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
          Length = 148

 Score = 29.6 bits (65), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
          LD  YF  VTL+T+G G+  P   F +  T + I I I +
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93


>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
 pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
          Length = 97

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 23 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
          G   ++  E    +D  YF  VTL+T+G GD  P   F +  T + I I I +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73


>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 28.9 bits (63), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
           Highlights A Mechanism Of Channel Opening At The
           Bundle-Crossing Gate
          Length = 301

 Score = 28.9 bits (63), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 28.9 bits (63), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
           Channel From Magnetospirillum Magnetotacticum
 pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
           Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 28.9 bits (63), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 28.9 bits (63), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 28.9 bits (63), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           SF D  +F   T++TIG+G L+P
Sbjct: 82  SFTDAFFFSVQTMATIGYGKLIP 104


>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
 pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
          Length = 114

 Score = 28.5 bits (62), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36  LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETAL 95
           +D  YF  VTL+T+G G+  P   F +  T + I I I +    G   + A   Q  + L
Sbjct: 51  IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL--VFGFIHKLAVNVQLPSIL 108

Query: 96  T 96
           +
Sbjct: 109 S 109


>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
 pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
          Length = 114

 Score = 28.5 bits (62), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36  LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETAL 95
           +D  YF  VTL+T+G G+  P   F +  T + I I I +    G   + A   Q  + L
Sbjct: 51  IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL--VFGFIHKLAVNVQLPSIL 108

Query: 96  T 96
           +
Sbjct: 109 S 109


>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
          Length = 333

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 35  FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEIS 74
           F+   +F   TL+T+G+GD+ P   +      ++I + +S
Sbjct: 97  FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMS 136


>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
 pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
 pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
          Length = 333

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 35  FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEIS 74
           F+   +F   TL+T+G+GD+ P   +      ++I + +S
Sbjct: 97  FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMS 136


>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double
          Mutants
 pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double
          Mutants
          Length = 114

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
          +D  YF  VTL+T+G G+  P   F +  T + I I I +
Sbjct: 51 IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90


>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
 pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
          Length = 114

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
          +D  YF  VTL+T+G G+  P   F +  T + I I I +
Sbjct: 51 IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90


>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
 pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
 pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
          Channel Pore
 pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
          Channel Pore
 pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
          Complex
 pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
          Complex
 pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
          Complex
 pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
          Complex
 pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
 pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
 pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
          COMPLEX
 pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
          COMPLEX
 pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
 pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
          Length = 96

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETAL 95
          +D  YF  VTL+T+G G+  P   F +  T + I I I +    G   + A   Q  + L
Sbjct: 33 IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL--VFGFIHKLAVNVQLPSIL 90

Query: 96 T 96
          +
Sbjct: 91 S 91


>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
 pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
 pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
 pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
          Length = 110

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36  LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETAL 95
           +D  YF  VTL+T+G G+  P   F +  T + I I I +    G   + A   Q  + L
Sbjct: 51  IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL--VFGFIHKLAVNVQLPSIL 108

Query: 96  T 96
           +
Sbjct: 109 S 109


>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
 pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
          Length = 336

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 27 FAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 56
          F   E W+     Y+ FVT++T+G+GD  P
Sbjct: 40 FIEGESWTV--SLYWTFVTIATVGYGDYSP 67


>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
 pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
 pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
 pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
          Length = 340

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 27 FAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 56
          F   E W+     Y+ FVT++T+G+GD  P
Sbjct: 40 FIEGESWTV--SLYWTFVTIATVGYGDYSP 67


>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
          Module In A Closed State In Lipid Membranes, Tetragonal
          Crystal Form
 pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
          Domain In A Closed State In Lipid Membranes
 pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
          Domain In A Closed State In Lipid Membranes
          Length = 137

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 26 VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEIS 74
          VF   E  ++ D  ++  VT +T+G+GD+VP     R    I ++  I+
Sbjct: 35 VFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIA 83


>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
 pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
 pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
 pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
 pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
 pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
          Length = 565

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 33 WSFLDGAYFCFVTLSTIGFGDL 54
          +SF+ G Y+    ++T+GFGD+
Sbjct: 50 YSFMAGIYWTITVMTTLGFGDI 71


>pdb|4GX5|A Chain A, Gsuk Channel
 pdb|4GX5|B Chain B, Gsuk Channel
 pdb|4GX5|C Chain C, Gsuk Channel
 pdb|4GX5|D Chain D, Gsuk Channel
          Length = 565

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 33 WSFLDGAYFCFVTLSTIGFGDL 54
          +SF+ G Y+    ++T+GFGD+
Sbjct: 50 YSFMAGIYWTITVMTTLGFGDI 71


>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
 pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
          Length = 241

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78
           S  D  ++  VT +T+G+GD+VP        T I  VI I+V  T
Sbjct: 177 SVFDALWWAVVTATTVGYGDVVPA-------TPIGKVIGIAVMLT 214


>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
           In Complex With An Fab
          Length = 223

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78
           S  D  ++  VT +T+G+GD+VP        T I  VI I+V  T
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPA-------TPIGKVIGIAVMLT 202


>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
 pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
 pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
           With A 27mer Dna
 pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
           With A 27mer Dna
          Length = 240

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 49  IGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRP 83
           +  G  + GKSF+R   Q D++I+  ++ T   RP
Sbjct: 185 VLLGKPIQGKSFRRRVEQADLLIDTGLKRTERGRP 219


>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
           Chimera
 pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
           Chimera
          Length = 321

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 38  GAYFCFV-TLSTIGFGDLVPGKSFQRTDTQIDIVIEIS 74
           GA+F  V TL+T+G+GD+ P   +      ++I + +S
Sbjct: 81  GAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMS 118


>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
 pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
          Length = 514

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           S  D  ++  V+++T+G+GD+VP
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVP 397


>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
           (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
           Beta Subunit
 pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
           (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
           Beta Subunit
          Length = 514

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           S  D  ++  V+++T+G+GD+VP
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVP 397


>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
 pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
 pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
 pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
 pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
 pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
 pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
 pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
 pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
 pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
          Length = 91

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 31 EEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI 73
          E W+     Y+ FVT++T+G+GD  P        T   IV+ I
Sbjct: 34 ESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 74


>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
           Channel Kv1.2
          Length = 499

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           S  D  ++  V+++T+G+GD+VP
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVP 382


>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
           Complex
          Length = 499

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 34  SFLDGAYFCFVTLSTIGFGDLVP 56
           S  D  ++  V+++T+G+GD+VP
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVP 382


>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
          Length = 82

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 31 EEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI 73
          E W+     Y+ FVT++T+G+GD  P        T   IV+ I
Sbjct: 27 ESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67


>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
          100 Mm K+
 pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
          100 Mm K+ And Further Soaked In 100 Mm Na+
          Length = 82

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 31 EEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI 73
          E W+     Y+ FVT++T+G+GD  P        T   IV+ I
Sbjct: 27 ESWTV--SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67


>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
          100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
          Length = 82

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 31 EEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI 73
          E W+     Y+ FVT++T+G+GD  P        T   IV+ I
Sbjct: 27 ESWTV--SLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGI 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,070,832
Number of Sequences: 62578
Number of extensions: 111878
Number of successful extensions: 177
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 43
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)