Query psy15872
Match_columns 96
No_of_seqs 163 out of 1101
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:45:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07885 Ion_trans_2: Ion chan 99.7 4.9E-17 1.1E-21 101.3 4.9 63 16-78 3-68 (79)
2 KOG4404|consensus 99.5 4.1E-15 9E-20 114.7 4.7 62 17-78 169-238 (350)
3 KOG1419|consensus 99.4 2.2E-13 4.8E-18 111.0 7.7 73 5-78 230-313 (654)
4 KOG3713|consensus 99.4 1.7E-13 3.8E-18 109.9 6.0 46 33-78 376-421 (477)
5 KOG1545|consensus 99.3 1.1E-12 2.4E-17 103.4 2.9 78 16-93 364-454 (507)
6 PRK10537 voltage-gated potassi 99.3 6.1E-12 1.3E-16 99.2 6.8 61 16-76 144-210 (393)
7 KOG1418|consensus 99.2 3.9E-12 8.5E-17 96.2 3.4 46 33-78 114-159 (433)
8 KOG4404|consensus 99.2 9.8E-12 2.1E-16 96.2 5.4 70 8-77 8-123 (350)
9 KOG1418|consensus 99.1 4.7E-12 1E-16 95.8 -1.6 64 16-79 224-295 (433)
10 KOG1420|consensus 99.0 9.3E-10 2E-14 91.4 5.3 78 16-93 257-355 (1103)
11 PLN03192 Voltage-dependent pot 98.9 1.8E-09 3.8E-14 91.0 6.6 44 35-78 251-294 (823)
12 KOG4390|consensus 98.8 1.1E-09 2.4E-14 87.5 1.9 61 17-77 333-399 (632)
13 PF01007 IRK: Inward rectifier 98.2 3.3E-06 7.2E-11 65.7 5.4 58 33-90 83-144 (336)
14 KOG3684|consensus 98.1 2.3E-06 5E-11 69.1 4.0 62 17-78 262-331 (489)
15 KOG3193|consensus 98.0 1.5E-05 3.2E-10 66.6 5.6 46 33-78 216-261 (1087)
16 KOG0498|consensus 97.9 8.9E-06 1.9E-10 68.9 2.9 44 35-78 295-338 (727)
17 KOG0501|consensus 97.6 4.6E-05 9.9E-10 64.0 3.0 45 34-78 423-467 (971)
18 PF00520 Ion_trans: Ion transp 96.0 0.025 5.4E-07 38.1 5.8 41 33-73 144-189 (200)
19 KOG3827|consensus 95.0 0.13 2.9E-06 41.2 7.3 42 34-75 112-155 (400)
20 KOG0500|consensus 94.2 0.086 1.9E-06 43.5 4.7 42 36-78 185-226 (536)
21 KOG0499|consensus 87.0 1 2.2E-05 38.5 4.3 45 32-77 401-445 (815)
22 PF00060 Lig_chan: Ligand-gate 77.7 4.7 0.0001 26.3 4.0 43 34-77 44-86 (148)
23 PF07077 DUF1345: Protein of u 76.7 1.5 3.2E-05 31.5 1.4 46 33-78 131-176 (180)
24 PRK05482 potassium-transportin 71.5 19 0.00041 30.4 6.8 40 33-72 450-491 (559)
25 TIGR00933 2a38 potassium uptak 71.1 8.7 0.00019 30.2 4.6 39 34-72 231-271 (390)
26 TIGR00933 2a38 potassium uptak 68.4 13 0.00029 29.1 5.1 41 32-72 346-389 (390)
27 COG0168 TrkG Trk-type K+ trans 66.6 23 0.0005 29.2 6.3 67 6-72 393-470 (499)
28 PF02386 TrkH: Cation transpor 58.4 17 0.00036 28.1 3.9 55 18-72 277-338 (354)
29 KOG3491|consensus 53.6 16 0.00034 22.1 2.4 23 9-31 37-59 (65)
30 COG1226 Kch Kef-type K+ transp 49.8 2.5 5.4E-05 28.1 -1.7 38 33-70 116-153 (212)
31 PRK10750 potassium transporter 48.6 66 0.0014 26.4 6.1 50 22-72 410-465 (483)
32 KOG3676|consensus 44.4 55 0.0012 28.8 5.2 50 10-59 545-613 (782)
33 TIGR00934 2a38euk potassium up 38.6 1.1E+02 0.0024 27.1 6.2 64 9-72 702-784 (800)
34 PF05753 TRAP_beta: Translocon 38.3 25 0.00055 25.2 2.0 42 47-88 127-179 (181)
35 PF04694 Corona_3: Coronavirus 30.5 23 0.00049 21.0 0.6 22 34-55 16-46 (60)
36 PRK10750 potassium transporter 30.5 1.6E+02 0.0034 24.2 5.6 32 19-51 192-223 (483)
37 PF06624 RAMP4: Ribosome assoc 28.0 28 0.0006 21.0 0.6 22 9-30 37-58 (63)
38 PLN02351 cytochromes b561 fami 27.2 87 0.0019 23.7 3.3 43 50-93 190-232 (242)
39 KOG1052|consensus 26.0 1.6E+02 0.0036 24.4 5.1 42 34-76 381-422 (656)
40 KOG4440|consensus 23.2 1.6E+02 0.0035 26.0 4.5 38 33-70 612-649 (993)
41 PF02386 TrkH: Cation transpor 23.1 82 0.0018 24.2 2.6 47 31-77 50-103 (354)
No 1
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.68 E-value=4.9e-17 Score=101.26 Aligned_cols=63 Identities=38% Similarity=0.604 Sum_probs=52.8
Q ss_pred HHHHHHHHhHHHHh---hhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 16 QHGYICIGAGVFAA---WEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~---~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
++.++..++..+.. .|+|++.|++||+++|+|||||||+.|.++.||++++++++.|+.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~ 68 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFAL 68 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHH
Confidence 45566677777777 5679999999999999999999999999999999999999999998875
No 2
>KOG4404|consensus
Probab=99.55 E-value=4.1e-15 Score=114.71 Aligned_cols=62 Identities=37% Similarity=0.688 Sum_probs=55.0
Q ss_pred HHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCc--------chhHHHHHHHHHHHHHHhh
Q psy15872 17 HGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKS--------FQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 17 ~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~--------~g~~~~~~~~~~gi~~i~~ 78 (96)
.+.+..|+.+|+..|+|+|+||+|||++|+|||||||.++... ..+.+...++++|+.++..
T Consensus 169 ~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a 238 (350)
T KOG4404|consen 169 ILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYA 238 (350)
T ss_pred HHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHH
Confidence 5567789999999999999999999999999999999999554 4567889999999999876
No 3
>KOG1419|consensus
Probab=99.45 E-value=2.2e-13 Score=111.05 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhc-----------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHH
Q psy15872 5 DIEINAHSDRCQHGYICIGAGVFAAWEE-----------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI 73 (96)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-----------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi 73 (96)
++|+++.+-..++..+. .+++.+..|. -+|.||+||+++|+|||||||++|+|+.||+++..+.++||
T Consensus 230 ~~ELiTt~YIGFL~LIf-sSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligi 308 (654)
T KOG1419|consen 230 SKELITTWYIGFLVLIF-SSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGI 308 (654)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHH
Confidence 57788888777666664 4444445553 48999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy15872 74 SVRPT 78 (96)
Q Consensus 74 ~~i~~ 78 (96)
+|+..
T Consensus 309 SFFAL 313 (654)
T KOG1419|consen 309 SFFAL 313 (654)
T ss_pred HHHhc
Confidence 99975
No 4
>KOG3713|consensus
Probab=99.43 E-value=1.7e-13 Score=109.87 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=42.7
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
-|.+-++||+++|||||||||++|.|..||+.+...++.||..+.+
T Consensus 376 tSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAl 421 (477)
T KOG3713|consen 376 TSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLAL 421 (477)
T ss_pred ccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhc
Confidence 5778899999999999999999999999999999999999888765
No 5
>KOG1545|consensus
Probab=99.30 E-value=1.1e-12 Score=103.36 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=55.8
Q ss_pred HHHHHHHHhHHHHhh----h---c----CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh--hccc
Q psy15872 16 QHGYICIGAGVFAAW----E---E----WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT--LGVR 82 (96)
Q Consensus 16 l~~~l~~ga~~~~~~----e---~----~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~--~~~~ 82 (96)
++.++.+|..+|..- | + -+..||+||++||||||||||++|.|..||+...+.++.|+.=+.. --.-
T Consensus 364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 455566666655432 2 1 5889999999999999999999999999999998888888655433 1224
Q ss_pred cccCCcccccc
Q psy15872 83 PRYATGDQEET 93 (96)
Q Consensus 83 ~~~~~~~~~~~ 93 (96)
+|++..+..||
T Consensus 444 sNFnyFYhrEt 454 (507)
T KOG1545|consen 444 SNFNYFYHRET 454 (507)
T ss_pred ecccceeeccc
Confidence 45555544444
No 6
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.29 E-value=6.1e-12 Score=99.18 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=51.2
Q ss_pred HHHHHHHHhHHHHhhhc------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHH
Q psy15872 16 QHGYICIGAGVFAAWEE------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVR 76 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i 76 (96)
+...+..+...++..|+ +++.||+||+++|+||+||||++|.++.||++++..++.|+.++
T Consensus 144 ~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf 210 (393)
T PRK10537 144 ITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVF 210 (393)
T ss_pred HHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455556665555554 79999999999999999999999999999999999999998765
No 7
>KOG1418|consensus
Probab=99.25 E-value=3.9e-12 Score=96.16 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=44.5
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
|++.+|+||+.+++||||||++.|.|+.||+++++|+++||.++.+
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li 159 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLL 159 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999998854
No 8
>KOG4404|consensus
Probab=99.24 E-value=9.8e-12 Score=96.16 Aligned_cols=70 Identities=26% Similarity=0.477 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh----------------------------------------------cCChhhhhhh
Q psy15872 8 INAHSDRCQHGYICIGAGVFAAWE----------------------------------------------EWSFLDGAYF 41 (96)
Q Consensus 8 ~~~~~~~~l~~~l~~ga~~~~~~e----------------------------------------------~~s~~da~Yf 41 (96)
+.+.+.+|.+.|+++||.+|..+| .|+|.-|+||
T Consensus 8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYF 87 (350)
T KOG4404|consen 8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYF 87 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEE
Confidence 455667788999999999999986 2899999999
Q ss_pred eeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 42 CFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 42 ~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+.+.+||||||...|.|+.||+|+|+|.++|+..-+
T Consensus 88 a~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~l 123 (350)
T KOG4404|consen 88 ATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTL 123 (350)
T ss_pred EEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHH
Confidence 999999999999999999999999999999987754
No 9
>KOG1418|consensus
Probab=99.12 E-value=4.7e-12 Score=95.76 Aligned_cols=64 Identities=33% Similarity=0.662 Sum_probs=56.1
Q ss_pred HHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchh--------HHHHHHHHHHHHHHhhh
Q psy15872 16 QHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQR--------TDTQIDIVIEISVRPTL 79 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~--------~~~~~~~~~gi~~i~~~ 79 (96)
+++|+..|+.++..+|+|++++++||+++|+|||||||++|.++.++ ........+|.....+.
T Consensus 224 ~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 295 (433)
T KOG1418|consen 224 SLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALV 295 (433)
T ss_pred eEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHH
Confidence 46678889999999999999999999999999999999999999877 56777788888777663
No 10
>KOG1420|consensus
Probab=98.95 E-value=9.3e-10 Score=91.35 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHHHhhhc-------------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh----
Q psy15872 16 QHGYICIGAGVFAAWEE-------------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT---- 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~-------------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~---- 78 (96)
++...+.++...+.+|+ .+|+|++||-.+||+||||||++-.|..||+|..++++.|++.+.-
T Consensus 257 fisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpe 336 (1103)
T KOG1420|consen 257 FISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPE 336 (1103)
T ss_pred HHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHH
Confidence 44455567777777775 4789999999999999999999999999999999999999988753
Q ss_pred ----hccccccCCcccccc
Q psy15872 79 ----LGVRPRYATGDQEET 93 (96)
Q Consensus 79 ----~~~~~~~~~~~~~~~ 93 (96)
.|-|.||..+++.|.
T Consensus 337 iielignr~kyggeyk~eh 355 (1103)
T KOG1420|consen 337 IIELIGNRKKYGGEYKAEH 355 (1103)
T ss_pred HHHHHccccccCceeehhc
Confidence 799999999987664
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.94 E-value=1.8e-09 Score=91.02 Aligned_cols=44 Identities=16% Similarity=0.443 Sum_probs=40.0
Q ss_pred hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.++..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~ 294 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAY 294 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999888643
No 12
>KOG4390|consensus
Probab=98.84 E-value=1.1e-09 Score=87.51 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=49.7
Q ss_pred HHHHHHHhHHHHhhhc------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 17 HGYICIGAGVFAAWEE------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 17 ~~~l~~ga~~~~~~e~------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
...+++++++|+.-.+ -+...|+||+++||||.||||++|.|-.||++..+..+-|+.++.
T Consensus 333 MAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIA 399 (632)
T KOG4390|consen 333 MAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIA 399 (632)
T ss_pred HHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEe
Confidence 4555666666665433 477899999999999999999999999999999988888876654
No 13
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.17 E-value=3.3e-06 Score=65.75 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=42.6
Q ss_pred CChhhhhhheeeeeeceecCC--cccCCcchhHHHHHHHHHHHHHHhh-hcc-ccccCCccc
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGD--LVPGKSFQRTDTQIDIVIEISVRPT-LGV-RPRYATGDQ 90 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGD--i~P~t~~g~~~~~~~~~~gi~~i~~-~~~-~~~~~~~~~ 90 (96)
.+|.+|++|++.|+||||||. +.|..+.+.++..+++++|+.+... .|+ -.|.+++.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 489999999999999999999 5678889999999999999877654 343 455555543
No 14
>KOG3684|consensus
Probab=98.14 E-value=2.3e-06 Score=69.07 Aligned_cols=62 Identities=18% Similarity=0.336 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHHhhhc--------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 17 HGYICIGAGVFAAWEE--------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 17 ~~~l~~ga~~~~~~e~--------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+.+.++.+.++..-|. .++.+++|+-.+|+-+|||||++|.|..||..++.-.++|-...+.
T Consensus 262 l~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal 331 (489)
T KOG3684|consen 262 LSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL 331 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH
Confidence 4455566666666553 4589999999999999999999999999999999999999777654
No 15
>KOG3193|consensus
Probab=97.96 E-value=1.5e-05 Score=66.59 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=40.3
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.+.+.++||.++|++||||||-+|.-+..++...+.+-+.+.++..
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~ 261 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPK 261 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHH
Confidence 6889999999999999999999999999998888777777666653
No 16
>KOG0498|consensus
Probab=97.87 E-value=8.9e-06 Score=68.87 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=41.2
Q ss_pred hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
|.-|+||++.|+||+||||..|.++.-++|+++++++|+.+.+.
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~ 338 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAY 338 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 46689999999999999999999999999999999999998875
No 17
>KOG0501|consensus
Probab=97.60 E-value=4.6e-05 Score=63.98 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=39.6
Q ss_pred ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 34 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 34 s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
-|..++||++.+|||||||++.|.|+.-|+|....+++|-.+..+
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAt 467 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYAT 467 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999998888888666543
No 18
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.03 E-value=0.025 Score=38.07 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=33.2
Q ss_pred CChhhhhhheeeeeeceecCCcccC-----CcchhHHHHHHHHHHH
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPG-----KSFQRTDTQIDIVIEI 73 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~-----t~~g~~~~~~~~~~gi 73 (96)
.++..++|+.+.++|+.|+||..|. +..+.++...+.+++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVS 189 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHH
Confidence 4789999999999999999999997 7777777755454443
No 19
>KOG3827|consensus
Probab=94.99 E-value=0.13 Score=41.19 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=32.9
Q ss_pred ChhhhhhheeeeeeceecCCcccCCc--chhHHHHHHHHHHHHH
Q psy15872 34 SFLDGAYFCFVTLSTIGFGDLVPGKS--FQRTDTQIDIVIEISV 75 (96)
Q Consensus 34 s~~da~Yf~~vTltTVGyGDi~P~t~--~g~~~~~~~~~~gi~~ 75 (96)
++..||-|++-|-||||||--++... .+-+..+++.++|..+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii 155 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVII 155 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHH
Confidence 67889999999999999999988664 4555556667766554
No 20
>KOG0500|consensus
Probab=94.24 E-value=0.086 Score=43.54 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=37.2
Q ss_pred hhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 36 ~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.-++|||..|+||+| --..|.++.-..|...-.++|+.++++
T Consensus 185 ~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAt 226 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFAT 226 (536)
T ss_pred HHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhh
Confidence 348999999999999 677899999999999999999888776
No 21
>KOG0499|consensus
Probab=87.05 E-value=1 Score=38.54 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.8
Q ss_pred cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 32 EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 32 ~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+..|.-|+||++-|++||| |..-|.+-.--+|...--+.|+..++
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFs 445 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFS 445 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999 89889887766666555556655543
No 22
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=77.67 E-value=4.7 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.1
Q ss_pred ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 34 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 34 s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+..+++|+.+.++.. +-++..|.+..+|++.+...+..+.+..
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~ 86 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIA 86 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 367789999888777 6688999999999999887777666554
No 23
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=76.71 E-value=1.5 Score=31.46 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=40.5
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.+|.|=+||+++.=+|-.=-|..+.+..-|-..+...++...|-..
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ 176 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTV 176 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999899999999999999999999999887777543
No 24
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=71.51 E-value=19 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred CChhhhhhheeeeeeceec--CCcccCCcchhHHHHHHHHHH
Q psy15872 33 WSFLDGAYFCFVTLSTIGF--GDLVPGKSFQRTDTQIDIVIE 72 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGy--GDi~P~t~~g~~~~~~~~~~g 72 (96)
..+.|.+|=..-...|+|. |++.|.++.+|+..++.+++|
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 6889999988888888885 678899999999988888777
No 25
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=71.14 E-value=8.7 Score=30.16 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=30.1
Q ss_pred Chhhhhhheeeeeeceec--CCcccCCcchhHHHHHHHHHH
Q psy15872 34 SFLDGAYFCFVTLSTIGF--GDLVPGKSFQRTDTQIDIVIE 72 (96)
Q Consensus 34 s~~da~Yf~~vTltTVGy--GDi~P~t~~g~~~~~~~~~~g 72 (96)
+..++.++...+.+|.|| +|..--++..+++.++.+++|
T Consensus 231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 368889999999999999 454445567777777777777
No 26
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=68.42 E-value=13 Score=29.10 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=31.8
Q ss_pred cCChhhhhhheeeeeeceecCCcc--c-CCcchhHHHHHHHHHH
Q psy15872 32 EWSFLDGAYFCFVTLSTIGFGDLV--P-GKSFQRTDTQIDIVIE 72 (96)
Q Consensus 32 ~~s~~da~Yf~~vTltTVGyGDi~--P-~t~~g~~~~~~~~~~g 72 (96)
+.++.|+++=++-.+.|||.+--. | .++.+|+..++.+++|
T Consensus 346 ~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 346 GYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 789999999999999999975432 4 6778888777666554
No 27
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=66.56 E-value=23 Score=29.17 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=42.3
Q ss_pred HHHHHHHHHHH---HHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecC--CcccCCcch------hHHHHHHHHHH
Q psy15872 6 IEINAHSDRCQ---HGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFG--DLVPGKSFQ------RTDTQIDIVIE 72 (96)
Q Consensus 6 ~~~~~~~~~~l---~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyG--Di~P~t~~g------~~~~~~~~~~g 72 (96)
++.+...++-+ .+.+++++......|..++.|+++=.+.++.|||.| -..|.++.+ |+.-++.+++|
T Consensus 393 ~~~i~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 393 EDTIRKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 34444444443 334445555555555457999999999999999974 443335555 77666666666
No 28
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=58.36 E-value=17 Score=28.05 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHhhhcCC-hhhhhhheeeeeeceec--CCccc-CCcc---hhHHHHHHHHHH
Q psy15872 18 GYICIGAGVFAAWEEWS-FLDGAYFCFVTLSTIGF--GDLVP-GKSF---QRTDTQIDIVIE 72 (96)
Q Consensus 18 ~~l~~ga~~~~~~e~~s-~~da~Yf~~vTltTVGy--GDi~P-~t~~---g~~~~~~~~~~g 72 (96)
..+.+++......+... +.|+++=++-.++|||. |...| .+.. +|+..++.+++|
T Consensus 277 ~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 277 IIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp HHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 33444555555545433 68999999999999986 44223 3333 888877777766
No 29
>KOG3491|consensus
Probab=53.56 E-value=16 Score=22.14 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhh
Q psy15872 9 NAHSDRCQHGYICIGAGVFAAWE 31 (96)
Q Consensus 9 ~~~~~~~l~~~l~~ga~~~~~~e 31 (96)
..|+++.+++++..|+.+|....
T Consensus 37 vgPwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 37 VGPWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred cchHHHHHHHHHhhcHHHHHHHH
Confidence 46889999999999999987654
No 30
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=49.77 E-value=2.5 Score=28.09 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=28.7
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHH
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIV 70 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~ 70 (96)
....+..|+...+++++|+++++|.+..+.......+.
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~ 153 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAAL 153 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHh
Confidence 45567778888999999999999988777765444333
No 31
>PRK10750 potassium transporter; Provisional
Probab=48.62 E-value=66 Score=26.42 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=35.7
Q ss_pred HHhHHHHhhhcCChhhhhhheeeeeeceec--CCc----ccCCcchhHHHHHHHHHH
Q psy15872 22 IGAGVFAAWEEWSFLDGAYFCFVTLSTIGF--GDL----VPGKSFQRTDTQIDIVIE 72 (96)
Q Consensus 22 ~ga~~~~~~e~~s~~da~Yf~~vTltTVGy--GDi----~P~t~~g~~~~~~~~~~g 72 (96)
+++... ..++.+..+|+-=+..+++++|. |.. ...++.+|...++.+++|
T Consensus 410 ~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 410 VSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred HHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 333333 56778899999877788888876 433 346688898887777766
No 32
>KOG3676|consensus
Probab=44.36 E-value=55 Score=28.80 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhc-----------------CChhhhhhheeeee--eceecCCcccCCc
Q psy15872 10 AHSDRCQHGYICIGAGVFAAWEE-----------------WSFLDGAYFCFVTL--STIGFGDLVPGKS 59 (96)
Q Consensus 10 ~~~~~~l~~~l~~ga~~~~~~e~-----------------~s~~da~Yf~~vTl--tTVGyGDi~P~t~ 59 (96)
+..+.-+++.+.++.+.+...++ .+..|++.-.+.|+ .|+|+||..-..+
T Consensus 545 RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~ 613 (782)
T KOG3676|consen 545 RFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACEN 613 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhccc
Confidence 33444445555556666655543 24566655555555 7899999866444
No 33
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=38.61 E-value=1.1e+02 Score=27.07 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhc----------CChhhhhhheeeeeeceecCCccc---------CCcchhHHHHHHH
Q psy15872 9 NAHSDRCQHGYICIGAGVFAAWEE----------WSFLDGAYFCFVTLSTIGFGDLVP---------GKSFQRTDTQIDI 69 (96)
Q Consensus 9 ~~~~~~~l~~~l~~ga~~~~~~e~----------~s~~da~Yf~~vTltTVGyGDi~P---------~t~~g~~~~~~~~ 69 (96)
+...++-.+.++.++.++....|+ .++++.++=.+--+.|||+---+| -++.||++.++.+
T Consensus 702 irrqLs~dlw~I~l~~flI~I~E~~~l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM 781 (800)
T TIGR00934 702 LRRQLSFDLWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAML 781 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHH
Confidence 334444346677777777777775 356666666667788888744333 3566776555544
Q ss_pred HHH
Q psy15872 70 VIE 72 (96)
Q Consensus 70 ~~g 72 (96)
+.|
T Consensus 782 ~~G 784 (800)
T TIGR00934 782 IRG 784 (800)
T ss_pred Hcc
Confidence 433
No 34
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.27 E-value=25 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.5
Q ss_pred eceecCCcccCCcchhHH-----------HHHHHHHHHHHHhhhccccccCCc
Q psy15872 47 STIGFGDLVPGKSFQRTD-----------TQIDIVIEISVRPTLGVRPRYATG 88 (96)
Q Consensus 47 tTVGyGDi~P~t~~g~~~-----------~~~~~~~gi~~i~~~~~~~~~~~~ 88 (96)
++.|.|+|.+..+..|-+ .+....+++.+......++||.+.
T Consensus 127 s~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~~~~~~~p~ll~~~sKsky~~~ 179 (181)
T PF05753_consen 127 SPPGEGDILAERDYDKKFSSHVMDWGAFAIMTLPVLLIPYLLWYSSKSKYEKS 179 (181)
T ss_pred cCCCcceEEeccccchhhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 788999999976665554 344444445555557778888876
No 35
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=30.48 E-value=23 Score=21.02 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=15.0
Q ss_pred Chhhhhhheee---------eeeceecCCcc
Q psy15872 34 SFLDGAYFCFV---------TLSTIGFGDLV 55 (96)
Q Consensus 34 s~~da~Yf~~v---------TltTVGyGDi~ 55 (96)
+=.|+.||+++ -+--|||||-.
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl 46 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTL 46 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHH
Confidence 44678899874 23358999953
No 36
>PRK10750 potassium transporter; Provisional
Probab=30.47 E-value=1.6e+02 Score=24.25 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=24.6
Q ss_pred HHHHHhHHHHhhhcCChhhhhhheeeeeeceec
Q psy15872 19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGF 51 (96)
Q Consensus 19 ~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGy 51 (96)
+.+++...+ ...+.+++||+..++.+++|=||
T Consensus 192 lT~~~~~ll-~~~Gm~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 192 LTVACALAL-WFAGMDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred HHHHHHHHH-HHcCCcHHHHHHHHHHHHhccCc
Confidence 333444443 45789999999999999999998
No 37
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=27.99 E-value=28 Score=21.04 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhh
Q psy15872 9 NAHSDRCQHGYICIGAGVFAAW 30 (96)
Q Consensus 9 ~~~~~~~l~~~l~~ga~~~~~~ 30 (96)
+-|+++.+++|+++|+.+|..+
T Consensus 37 Vgp~~L~l~iFVV~Gs~ifqii 58 (63)
T PF06624_consen 37 VGPWLLGLFIFVVCGSAIFQII 58 (63)
T ss_pred cCHHHHhhhheeeEcHHHHHHH
Confidence 4577888999999999988654
No 38
>PLN02351 cytochromes b561 family protein
Probab=27.23 E-value=87 Score=23.73 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=32.6
Q ss_pred ecCCcccCCcchhHHHHHHHHHHHHHHhhhccccccCCcccccc
Q psy15872 50 GFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEET 93 (96)
Q Consensus 50 GyGDi~P~t~~g~~~~~~~~~~gi~~i~~~~~~~~~~~~~~~~~ 93 (96)
+|.+..|+.-..+...+...++|..++... ++++|.+..+|.+
T Consensus 190 ~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~-~~p~~kr~~~~~~ 232 (242)
T PLN02351 190 NVSKHGSESMVVNGLGLGLALLSGIVILAA-VLPKYQSHSSKLV 232 (242)
T ss_pred ccccCCchhhhHHHHHHHHHHHHHHHHHhh-cCccccCCCccCC
Confidence 688888998888888888788776665554 5688887777643
No 39
>KOG1052|consensus
Probab=25.95 E-value=1.6e+02 Score=24.36 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=28.9
Q ss_pred ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHH
Q psy15872 34 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVR 76 (96)
Q Consensus 34 s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i 76 (96)
+...++|+++.++..-|- |..|.+..+|++.....++.+.++
T Consensus 381 ~~~~~~~~~~~~~~~q~~-~~~p~~~~~Rll~~~w~~~~lil~ 422 (656)
T KOG1052|consen 381 SLLNCLWLTVGSLLQQGS-DEIPRSLSTRLLLGAWWLFVLILI 422 (656)
T ss_pred ecccchhhhhHHHhccCC-CccccchhhhHHHHHHHHHHHHHH
Confidence 334455666666666664 499999999998877777666443
No 40
>KOG4440|consensus
Probab=23.18 E-value=1.6e+02 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHH
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIV 70 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~ 70 (96)
.++..|+||+--.+.--|-|+-.|.+-..|++.|.++-
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaG 649 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAG 649 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhh
Confidence 57889999998778888999999999999988776543
No 41
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=23.14 E-value=82 Score=24.21 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=24.5
Q ss_pred hcCChhhhhhheeeeeeceec---CC-cccCCc--chhHHHHHHHHHH-HHHHh
Q psy15872 31 EEWSFLDGAYFCFVTLSTIGF---GD-LVPGKS--FQRTDTQIDIVIE-ISVRP 77 (96)
Q Consensus 31 e~~s~~da~Yf~~vTltTVGy---GD-i~P~t~--~g~~~~~~~~~~g-i~~i~ 77 (96)
.+.+++||++.++.+++|-|+ +| +.|-++ .-....++.+++| ++|..
T Consensus 50 ~g~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~~ 103 (354)
T PF02386_consen 50 GGMPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFPL 103 (354)
T ss_dssp HT--SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HHH
T ss_pred cCCcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHHH
Confidence 357899999999999999998 22 334332 4445555555544 34433
Done!