Query psy15872
Match_columns 96
No_of_seqs 163 out of 1101
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:46:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1e_A Water soluble analogue 99.8 1.2E-19 4.2E-24 117.6 7.0 74 5-78 4-84 (103)
2 3ldc_A Calcium-gated potassium 99.8 1E-19 3.5E-24 114.0 6.3 66 13-78 7-72 (82)
3 3ouf_A Potassium channel prote 99.8 1.2E-19 4.1E-24 117.0 6.0 72 7-78 5-76 (97)
4 2q67_A Potassium channel prote 99.8 1.1E-19 3.6E-24 120.3 5.5 70 9-78 24-93 (114)
5 3vou_A ION transport 2 domain 99.8 4.3E-19 1.5E-23 121.2 5.6 72 7-78 25-96 (148)
6 3eff_K Voltage-gated potassium 99.8 9.6E-19 3.3E-23 118.1 7.0 74 5-78 4-84 (139)
7 2a9h_A Voltage-gated potassium 99.7 2.1E-18 7.3E-23 119.6 6.8 74 5-78 48-128 (155)
8 4h33_A LMO2059 protein; bilaye 99.7 2.2E-18 7.5E-23 117.0 5.9 57 22-78 29-87 (137)
9 2ih3_C Voltage-gated potassium 99.7 3.9E-18 1.3E-22 113.6 6.7 74 5-78 25-105 (122)
10 3um7_A Potassium channel subfa 99.6 2.1E-16 7.1E-21 120.2 6.5 64 15-78 205-274 (309)
11 3ukm_A Potassium channel subfa 99.6 3.5E-16 1.2E-20 117.6 6.6 64 15-78 181-252 (280)
12 3pjs_K KCSA, voltage-gated pot 99.6 1.8E-17 6.1E-22 115.3 -1.3 63 16-78 42-111 (166)
13 3um7_A Potassium channel subfa 99.6 6.4E-16 2.2E-20 117.5 6.5 72 7-78 30-159 (309)
14 3ukm_A Potassium channel subfa 99.6 1.2E-15 4.1E-20 114.7 6.4 71 8-78 12-137 (280)
15 1orq_C Potassium channel; volt 99.6 3.3E-15 1.1E-19 106.3 6.7 63 16-78 140-209 (223)
16 1lnq_A MTHK channels, potassiu 99.5 7.3E-16 2.5E-20 115.0 -1.6 63 16-78 27-89 (336)
17 4gx0_A TRKA domain protein; me 99.5 4.6E-14 1.6E-18 111.7 6.7 67 12-78 23-95 (565)
18 1xl4_A Inward rectifier potass 99.4 1.3E-13 4.3E-18 104.1 6.2 57 22-78 63-126 (301)
19 3beh_A MLL3241 protein; transm 99.4 2.6E-13 9E-18 101.8 6.6 63 16-78 136-205 (355)
20 2qks_A KIR3.1-prokaryotic KIR 99.4 6.1E-13 2.1E-17 101.3 6.7 46 33-78 77-122 (321)
21 1p7b_A Integral membrane chann 99.4 5.5E-13 1.9E-17 102.0 5.7 46 33-78 95-140 (333)
22 2r9r_B Paddle chimera voltage 99.1 8.7E-11 3E-15 93.6 6.7 58 20-78 355-419 (514)
23 3sya_A G protein-activated inw 99.0 4E-10 1.4E-14 86.6 7.1 46 33-78 90-137 (340)
24 3spc_A Inward-rectifier K+ cha 99.0 6.9E-10 2.4E-14 85.3 6.3 46 33-78 93-140 (343)
25 3rvy_A ION transport protein; 98.4 2E-07 6.7E-12 68.1 3.3 45 33-77 179-229 (285)
26 4dxw_A Navrh, ION transport pr 94.8 0.032 1.1E-06 39.0 4.2 40 33-72 164-207 (229)
27 3kg2_A Glutamate receptor 2; I 93.5 0.1 3.5E-06 41.9 5.1 43 35-78 564-606 (823)
28 3pjz_A Potassium uptake protei 55.0 32 0.0011 27.1 6.3 50 22-72 412-467 (494)
29 2jo1_A Phospholemman; FXYD1, N 20.7 1.3E+02 0.0046 17.8 3.6 20 59-78 18-37 (72)
No 1
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.80 E-value=1.2e-19 Score=117.61 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 5 DIEINAHSDRCQHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+++.....+..++.++++++.+++..|+| ++.||+||+++|+|||||||++|.++.||+++++++++|+.++.
T Consensus 4 ~~r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~ 83 (103)
T 2k1e_A 4 HEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFA 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 34445555666778888999999999986 99999999999999999999999999999999999999999986
Q ss_pred h
Q psy15872 78 T 78 (96)
Q Consensus 78 ~ 78 (96)
.
T Consensus 84 ~ 84 (103)
T 2k1e_A 84 L 84 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.79 E-value=1e-19 Score=114.04 Aligned_cols=66 Identities=27% Similarity=0.292 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 13 DRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 13 ~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+..++.++..|+..|+..|+|++.||+||+++|+|||||||++|.++.||++++.+++.|+.++..
T Consensus 7 ~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~ 72 (82)
T 3ldc_A 7 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAV 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999999999999999999999999999999999988765
No 3
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.79 E-value=1.2e-19 Score=117.01 Aligned_cols=72 Identities=25% Similarity=0.281 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 7 EINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 7 ~~~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+.+...+..++.+++.|+..|+..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~ 76 (97)
T 3ouf_A 5 KEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFG 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 344445555677888899999999999999999999999999999999999999999999999999988765
No 4
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.79 E-value=1.1e-19 Score=120.26 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 9 NAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 9 ~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+...+..++.+++.|+.+|+..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 24 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~ 93 (114)
T 2q67_A 24 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFG 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHH
Confidence 3444555667788899999999999999999999999999999999999999999999999999998765
No 5
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.76 E-value=4.3e-19 Score=121.22 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 7 EINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 7 ~~~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+.+...+..++.+++.|+..|...|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~ 96 (148)
T 3vou_A 25 KEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFG 96 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 344555565677888899999999999999999999999999999999999999999999999999988764
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.76 E-value=9.6e-19 Score=118.11 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
..+.+...+..+++++++++.+++..|+ |++.||+||+++|+|||||||++|.++.||+++++++++|+.++.
T Consensus 4 ~~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~ 83 (139)
T 3eff_K 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFG 83 (139)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 3444555666677888899999999998 999999999999999999999999999999999999999998876
Q ss_pred h
Q psy15872 78 T 78 (96)
Q Consensus 78 ~ 78 (96)
.
T Consensus 84 ~ 84 (139)
T 3eff_K 84 L 84 (139)
T ss_dssp H
T ss_pred H
Confidence 5
No 7
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.74 E-value=2.1e-18 Score=119.59 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 5 DIEINAHSDRCQHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+.+.....+..+++++++++.+++..|++ ++.||+||+++|+|||||||++|.|+.||+++++++++|+.++.
T Consensus 48 ~~~~~~~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a 127 (155)
T 2a9h_A 48 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYG 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 34445555555677788899999999987 89999999999999999999999999999999999999998875
Q ss_pred h
Q psy15872 78 T 78 (96)
Q Consensus 78 ~ 78 (96)
.
T Consensus 128 ~ 128 (155)
T 2a9h_A 128 L 128 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.74 E-value=2.2e-18 Score=116.95 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=48.9
Q ss_pred HHhHHHHhhh--cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 22 IGAGVFAAWE--EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 22 ~ga~~~~~~e--~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+++..+...| .|++.||+||+++|+|||||||++|.|+.||+++++.+++|+.++..
T Consensus 29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~ 87 (137)
T 4h33_A 29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM 87 (137)
T ss_dssp HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 3443344444 49999999999999999999999999999999999999999988765
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.74 E-value=3.9e-18 Score=113.62 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872 5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77 (96)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~ 77 (96)
+.+........++.++.+++.+++..|+ |++.||+||+++|+|||||||++|.|+.||++++++++.|+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~ 104 (122)
T 2ih3_C 25 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFG 104 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3344444445556677788888988887 899999999999999999999999999999999999999999876
Q ss_pred h
Q psy15872 78 T 78 (96)
Q Consensus 78 ~ 78 (96)
.
T Consensus 105 ~ 105 (122)
T 2ih3_C 105 L 105 (122)
T ss_dssp H
T ss_pred H
Confidence 5
No 10
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=120.17 Aligned_cols=64 Identities=30% Similarity=0.461 Sum_probs=58.5
Q ss_pred HHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhH------HHHHHHHHHHHHHhh
Q psy15872 15 CQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT------DTQIDIVIEISVRPT 78 (96)
Q Consensus 15 ~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~------~~~~~~~~gi~~i~~ 78 (96)
++++++++|+.+|+..|+|++.||+||+++|+|||||||++|.++.||. ++++++++|+.++..
T Consensus 205 ~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~ 274 (309)
T 3um7_A 205 GCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFAS 274 (309)
T ss_dssp HHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999984 999999999988765
No 11
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=117.64 Aligned_cols=64 Identities=34% Similarity=0.755 Sum_probs=57.9
Q ss_pred HHHHHHHHHhHHHHhhh-cCChhhhhhheeeeeeceecCCcccCCcc-------hhHHHHHHHHHHHHHHhh
Q psy15872 15 CQHGYICIGAGVFAAWE-EWSFLDGAYFCFVTLSTIGFGDLVPGKSF-------QRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 15 ~l~~~l~~ga~~~~~~e-~~s~~da~Yf~~vTltTVGyGDi~P~t~~-------g~~~~~~~~~~gi~~i~~ 78 (96)
.+++++++|+.+|+..| +|++.||+||+++|+|||||||++|.++. +|+++++++++|+.++..
T Consensus 181 ~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~ 252 (280)
T 3ukm_A 181 TVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLV 252 (280)
T ss_dssp HHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence 34667889999999998 89999999999999999999999999996 599999999999998754
No 12
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.62 E-value=1.8e-17 Score=115.26 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 16 QHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+++++++++.+++..|+ |++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 42 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~ 111 (166)
T 3pjs_K 42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 111 (166)
T ss_dssp STTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888 9999999999999999999999999999999999999999998875
No 13
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=117.48 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhh-------------------------------------------------------
Q psy15872 7 EINAHSDRCQHGYICIGAGVFAAWE------------------------------------------------------- 31 (96)
Q Consensus 7 ~~~~~~~~~l~~~l~~ga~~~~~~e------------------------------------------------------- 31 (96)
......++|.+.|+++||.+|..+|
T Consensus 30 ~~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~ 109 (309)
T 3um7_A 30 TTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQS 109 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCC
Confidence 3445568888999999999998875
Q ss_pred ---cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 32 ---EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 32 ---~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++..
T Consensus 110 ~~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~ 159 (309)
T 3um7_A 110 SHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGI 159 (309)
T ss_dssp ---CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHH
Confidence 17899999999999999999999999999999999999999988754
No 14
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=114.71 Aligned_cols=71 Identities=28% Similarity=0.349 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh-------------------------------------------------------c
Q psy15872 8 INAHSDRCQHGYICIGAGVFAAWE-------------------------------------------------------E 32 (96)
Q Consensus 8 ~~~~~~~~l~~~l~~ga~~~~~~e-------------------------------------------------------~ 32 (96)
+.+...++.+.|+++||.+|..+| +
T Consensus 12 ~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~ 91 (280)
T 3ukm_A 12 MFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWN 91 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCC
Confidence 345556667899999999998776 2
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
|++.||+||+++|+|||||||+.|.|+.||+++++++++|+.+...
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~ 137 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLL 137 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988653
No 15
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.57 E-value=3.3e-15 Score=106.25 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=56.3
Q ss_pred HHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 16 QHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
++.++.+++..++..|+ +++.||+||+++|+|||||||+.|.|+.||++++..++.|+.++..
T Consensus 140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~ 209 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 45556678888888887 8999999999999999999999999999999999999999988764
No 16
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.50 E-value=7.3e-16 Score=115.05 Aligned_cols=63 Identities=29% Similarity=0.361 Sum_probs=57.6
Q ss_pred HHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 16 QHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+++++++|+.+|+..|+|+|.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 27 ~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~ 89 (336)
T 1lnq_A 27 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAV 89 (336)
T ss_dssp TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999999999999999999999999999888754
No 17
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.48 E-value=4.6e-14 Score=111.74 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhHHHHh----hhc--CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 12 SDRCQHGYICIGAGVFAA----WEE--WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 12 ~~~~l~~~l~~ga~~~~~----~e~--~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.+..+++++++++.+|+. .|+ |+|.||+||+++|+|||||||+.|.++.||+++++++++|+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~ 95 (565)
T 4gx0_A 23 YCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDI 95 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 333345555566666655 566 9999999999999999999999999999999999999999877643
No 18
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.44 E-value=1.3e-13 Score=104.12 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 22 IGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 22 ~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+.+.+|...++ +++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 63 ~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~ 126 (301)
T 1xl4_A 63 LFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAV 126 (301)
T ss_dssp HHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444665542 7999999999999999999999999999999999999999988764
No 19
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.41 E-value=2.6e-13 Score=101.82 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 16 QHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 16 l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
++..+.+++.+++..|++ ++.||+||+++|+|||||||++|.++.||+++.+.++.|+.++..
T Consensus 136 ~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~ 205 (355)
T 3beh_A 136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL 205 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 345566777788888874 899999999999999999999999999999999999999888754
No 20
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.38 E-value=6.1e-13 Score=101.28 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=43.3
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+++.||+||+++|+|||||||++|.+..||++++++++.|+.++..
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~ 122 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999888754
No 21
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.37 E-value=5.5e-13 Score=102.05 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=43.3
Q ss_pred CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~ 140 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 140 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999988754
No 22
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.12 E-value=8.7e-11 Score=93.63 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=48.0
Q ss_pred HHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 20 ICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 20 l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.++|+.++ ..|+ .++.||+||+++|+|||||||+.|.++.||+++++.++.|+.++.+
T Consensus 355 ~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l 419 (514)
T 2r9r_B 355 ILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 419 (514)
T ss_dssp HHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHH
Confidence 33444444 4465 4899999999999999999999999999999999999999877654
No 23
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.04 E-value=4e-10 Score=86.60 Aligned_cols=46 Identities=24% Similarity=0.152 Sum_probs=42.2
Q ss_pred CChhhhhhheeeeeeceecCCcccC--CcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPG--KSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~--t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.++.|++||+++|+|||||||+.|. ++.|++++.+++++|+.+...
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~ 137 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAF 137 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999997 688999999999999988765
No 24
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.98 E-value=6.9e-10 Score=85.34 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=42.0
Q ss_pred CChhhhhhheeeeeeceecCCcccC--CcchhHHHHHHHHHHHHHHhh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVPG--KSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P~--t~~g~~~~~~~~~~gi~~i~~ 78 (96)
.++.|++||+++|+|||||||+.|. ++.|+++..+++++|+.++..
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~ 140 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSF 140 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999974 899999999999999988765
No 25
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.36 E-value=2e-07 Score=68.13 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=35.9
Q ss_pred CChhhhhhheeeeeeceecC-Ccc-cCCcch----hHHHHHHHHHHHHHHh
Q psy15872 33 WSFLDGAYFCFVTLSTIGFG-DLV-PGKSFQ----RTDTQIDIVIEISVRP 77 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyG-Di~-P~t~~g----~~~~~~~~~~gi~~i~ 77 (96)
-++.||+|+.++++||+||| |+. |.++.| +.+....++.|+.++.
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~ln 229 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMIN 229 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHH
Confidence 58899999999999999999 996 877765 6666666666666554
No 26
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=94.79 E-value=0.032 Score=38.95 Aligned_cols=40 Identities=10% Similarity=-0.132 Sum_probs=28.4
Q ss_pred CChhhhhhheeeeeeceecCCccc----CCcchhHHHHHHHHHH
Q psy15872 33 WSFLDGAYFCFVTLSTIGFGDLVP----GKSFQRTDTQIDIVIE 72 (96)
Q Consensus 33 ~s~~da~Yf~~vTltTVGyGDi~P----~t~~g~~~~~~~~~~g 72 (96)
.++.+|+|..+.++|+.|++|+.. .++++.++-..+.+++
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~ 207 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIIC 207 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 478999999999999999999733 3445555444444444
No 27
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=93.48 E-value=0.1 Score=41.89 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=32.0
Q ss_pred hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872 35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~ 78 (96)
+.+++|+++.+++..| ++..|.+..+|++.....++++.+...
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~ 606 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISS 606 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHH
Confidence 6689999999999999 789999999999998888887777643
No 28
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=55.05 E-value=32 Score=27.14 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=35.7
Q ss_pred HHhHHHHhhhcCChhhhhhheeeeeeceec--CCcc----cCCcchhHHHHHHHHHH
Q psy15872 22 IGAGVFAAWEEWSFLDGAYFCFVTLSTIGF--GDLV----PGKSFQRTDTQIDIVIE 72 (96)
Q Consensus 22 ~ga~~~~~~e~~s~~da~Yf~~vTltTVGy--GDi~----P~t~~g~~~~~~~~~~g 72 (96)
+++.+.. ..+.++.|++.=+..+++|||- |..- ..++.+|...++.+++|
T Consensus 412 ~~~~~l~-~~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 412 VCMLGLI-ATGMDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG 467 (494)
T ss_dssp HHHHHHH-HHSSCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHH
Confidence 3444443 3568999999988899999985 5322 35678898887777777
No 29
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.74 E-value=1.3e+02 Score=17.78 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHHHHHHHhh
Q psy15872 59 SFQRTDTQIDIVIEISVRPT 78 (96)
Q Consensus 59 ~~g~~~~~~~~~~gi~~i~~ 78 (96)
..|.+++.+..++||.++.-
T Consensus 18 iGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHc
Confidence 34677888888888877765
Done!