RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15872
(96 letters)
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the
two membrane helix type ion channels found in bacteria.
Length = 74
Score = 49.1 bits (118), Expect = 2e-09
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 19 YICIGAGVFAAWEE---WSFLDGAYFCFVTLSTIGFGDLVPG 57
+ G ++ EE W FLD YF FVTL+TIG+GD+VP
Sbjct: 6 VLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPL 47
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 35.8 bits (83), Expect = 0.001
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 40 YFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78
YF VT+ST+G+GD+VP R T I++ I+V T
Sbjct: 174 YFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFAT 212
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
Length = 559
Score = 28.5 bits (64), Expect = 0.49
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 66 QIDIVIEIS----VRPTLGVRPRYATG 88
++D+VIE S VRP +GVR + T
Sbjct: 119 ELDLVIEASQRLGVRPVIGVRAKLRTK 145
>gnl|CDD|184154 PRK13573, PRK13573, anthranilate synthase component I; Provisional.
Length = 503
Score = 27.0 bits (60), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 72 EISVRPTLGVRPRYATGDQEE 92
E+++RP G RPR AT +++
Sbjct: 307 EVTIRPIAGTRPRGATPEEDR 327
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis)
[Amino acid transport and metabolism].
Length = 652
Score = 26.5 bits (59), Expect = 2.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Query: 65 TQIDIVIEIS----VRPTLGVRPRYAT 87
+++D+V+E + V+P LGVR R A+
Sbjct: 197 SELDLVLEEAKQLGVKPRLGVRARLAS 223
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic. Two
alternative pathways can convert arginine to putrescine.
One is decarboxylation by this enzyme followed by
removal of the urea moeity by agmatinase. In the other,
the ureohydrolase (arginase) acts first, followed by
ornithine decarboxylase. This pathway leads to
spermidine biosynthesis, hence the gene symbol speA. A
distinct biodegradative form is also pyridoxal
phosphate-dependent but is not similar in sequence
[Central intermediary metabolism, Polyamine
biosynthesis].
Length = 624
Score = 26.1 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 66 QIDIVIEIS----VRPTLGVRPRYAT 87
++D+VI+ + V+P LG+R R A+
Sbjct: 175 ELDLVIDEAKKLGVKPKLGLRARLAS 200
>gnl|CDD|235427 PRK05354, PRK05354, arginine decarboxylase; Provisional.
Length = 634
Score = 25.8 bits (58), Expect = 3.4
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 67 IDIVIEIS----VRPTLGVRPRYAT 87
+++++E + V+P LGVR R A+
Sbjct: 183 LELILEEAKELGVKPRLGVRARLAS 207
>gnl|CDD|220302 pfam09591, DUF2463, Protein of unknown function (DUF2463). This
protein is found in eukaryotic, parasitic microsporidia.
Its function is unknown.
Length = 210
Score = 25.5 bits (56), Expect = 4.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 31 EEWSFLDGAYFCFVT-----------LSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
++W D F + LST DLVPG TDT I+I+I++ +
Sbjct: 83 DKWENNDDPLFYSIILPSFFVPPTYLLSTSC--DLVPG-QIGFTDTGINILIDLLI 135
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Arginine Decarboxylase. This
subfamily includes plants and biosynthetic prokaryotic
arginine decarboxylases (ADC, EC 4.1.1.19). ADC is
involved in the biosynthesis of putrescine, which is the
precursor of aliphatic polyamines in many organisms. It
catalyzes the decarboxylation of L-arginine to agmatine,
which is then hydrolyzed to putrescine by agmatinase.
ADC is homologous to eukaryotic ornithine decarboxylase
(ODC) and diaminopimelate decarboxylase (DapDC), which
are fold type III PLP-dependent enzymes that contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. Homodimer formation and the presence
of both PLP and Mg2+ cofactors may be required for
catalytic activity. Prokaryotic ADCs (biodegradative),
which are fold type I PLP-dependent enzymes, are not
included in this family.
Length = 409
Score = 25.2 bits (56), Expect = 6.5
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Query: 67 IDIVIEIS----VRPTLGVRPRYAT 87
+D+++E++ V+P LGVR + A+
Sbjct: 124 LDLILELAKKLGVKPLLGVRIKLAS 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.440
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,933,295
Number of extensions: 399688
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 13
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)