RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15872
         (96 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
          {Archaeon Methanothermobacter thermautotrophicus
          [TaxId: 145262]}
          Length = 80

 Score = 52.8 bits (127), Expect = 2e-11
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
            I  G   F   E  S+    Y+ FVT++T+G+GD  P        T   IV+ I  
Sbjct: 11 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGT 68


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 30.0 bits (67), Expect = 0.018
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 21  CIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
            +G    A      F+   +F   TL+T+G+GD+ P   +      ++I + +S 
Sbjct: 48  QLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSG 102


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 28.4 bits (63), Expect = 0.073
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 31  EEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
              SF D  +F   T++TIG+G L+P      T   ++ +  +  
Sbjct: 57  RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLG 101


>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
          C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 27.9 bits (61), Expect = 0.13
 Identities = 7/54 (12%), Positives = 15/54 (27%)

Query: 3  SYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 56
             + +  H+D               A+   + L         +S +G G+   
Sbjct: 43 IQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLGESQA 96


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
          coelicolor [TaxId: 1902]}
          Length = 103

 Score = 27.2 bits (60), Expect = 0.19
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
           ++    ++   T +T+G+GDL P   + R    + +V  I+ 
Sbjct: 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITS 81


>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 24.1 bits (52), Expect = 2.0
 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 6/29 (20%)

Query: 15 CQHGYICIGAGVFAAWEEWSFLDGAYFCF 43
           +HG++           + +F +  Y+ F
Sbjct: 70 LKHGFLR------HTVNKITFSEQCYYVF 92


>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus
           [TaxId: 274]}
          Length = 156

 Score = 23.5 bits (50), Expect = 4.9
 Identities = 4/35 (11%), Positives = 8/35 (22%), Gaps = 6/35 (17%)

Query: 7   EINAHSDRCQHGYICI------GAGVFAAWEEWSF 35
            + A+S  C H    +                  +
Sbjct: 79  GVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVY 113


>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
           {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
          Length = 418

 Score = 23.6 bits (49), Expect = 6.4
 Identities = 9/66 (13%), Positives = 22/66 (33%)

Query: 1   MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSF 60
           + S +   N+ S         + + +       +   G YF     S++     +  ++ 
Sbjct: 296 LKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETD 355

Query: 61  QRTDTQ 66
            R D +
Sbjct: 356 ARKDYR 361


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0381    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,273
Number of extensions: 15472
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 13
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)